Diff of the two buildlogs: -- --- b1/build.log 2020-07-03 00:33:39.104933340 +0000 +++ b2/build.log 2020-07-03 05:41:59.691825679 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Jul 2 11:36:49 -12 2020 -I: pbuilder-time-stamp: 1593733009 +I: Current time: Fri Jul 3 14:37:51 +14 2020 +I: pbuilder-time-stamp: 1593736671 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Thu Mar 7 18:59:52 2019 -12 +gpgv: Signature made Fri Mar 8 20:59:52 2019 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -30,136 +30,170 @@ dpkg-source: info: applying 20_set_potentials_path.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3993/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/14943/tmp/hooks/D01_modify_environment starting +debug: Running on cbxi4pro0. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/14943/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/14943/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=5' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.0.3(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='c54013960f024adcac526b4533352757' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3993' - PS1='# ' - PS2='> ' + INVOCATION_ID=1e906da3428449f49eeed9564b9ba0e3 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=14943 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.TGylDHAAwN/pbuilderrc_Gg2V --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.TGylDHAAwN/b1 --logfile b1/build.log lammps_0~20181211.gitad1b1897d+dfsg1-2.dsc' - SUDO_GID='114' - SUDO_UID='109' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:8000/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.TGylDHAAwN/pbuilderrc_QqVU --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.TGylDHAAwN/b2 --logfile b2/build.log lammps_0~20181211.gitad1b1897d+dfsg1-2.dsc' + SUDO_GID=115 + SUDO_UID=111 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:8000/ I: uname -a - Linux ff64a 4.19.0-9-arm64 #1 SMP Debian 4.19.118-2+deb10u1 (2020-06-07) aarch64 GNU/Linux + Linux i-capture-the-hostname 4.19.0-9-armmp #1 SMP Debian 4.19.118-2+deb10u1 (2020-06-07) armv7l GNU/Linux I: ls -l /bin total 3328 - -rwxr-xr-x 1 root root 767656 Apr 17 2019 bash - -rwxr-xr-x 3 root root 26052 Jul 10 2019 bunzip2 - -rwxr-xr-x 3 root root 26052 Jul 10 2019 bzcat - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep - -rwxr-xr-x 3 root root 26052 Jul 10 2019 bzip2 - -rwxr-xr-x 1 root root 9636 Jul 10 2019 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore - -rwxr-xr-x 1 root root 22432 Feb 28 2019 cat - -rwxr-xr-x 1 root root 38868 Feb 28 2019 chgrp - -rwxr-xr-x 1 root root 38836 Feb 28 2019 chmod - -rwxr-xr-x 1 root root 42972 Feb 28 2019 chown - -rwxr-xr-x 1 root root 88376 Feb 28 2019 cp - -rwxr-xr-x 1 root root 75516 Jan 17 2019 dash - -rwxr-xr-x 1 root root 71648 Feb 28 2019 date - -rwxr-xr-x 1 root root 51212 Feb 28 2019 dd - -rwxr-xr-x 1 root root 55672 Feb 28 2019 df - -rwxr-xr-x 1 root root 88444 Feb 28 2019 dir - -rwxr-xr-x 1 root root 54872 Jan 9 2019 dmesg - lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname - -rwxr-xr-x 1 root root 22364 Feb 28 2019 echo - -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep - -rwxr-xr-x 1 root root 18260 Feb 28 2019 false - -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep - -rwxr-xr-x 1 root root 47356 Jan 9 2019 findmnt - -rwsr-xr-x 1 root root 21980 Apr 22 07:38 fusermount - -rwxr-xr-x 1 root root 124508 Jan 7 2019 grep - -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip - -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe - -rwxr-xr-x 1 root root 64232 Jan 5 2019 gzip - -rwxr-xr-x 1 root root 13784 Sep 26 2018 hostname - -rwxr-xr-x 1 root root 43044 Feb 28 2019 ln - -rwxr-xr-x 1 root root 34932 Jul 26 2018 login - -rwxr-xr-x 1 root root 88444 Feb 28 2019 ls - -rwxr-xr-x 1 root root 67036 Jan 9 2019 lsblk - -rwxr-xr-x 1 root root 47168 Feb 28 2019 mkdir - -rwxr-xr-x 1 root root 43040 Feb 28 2019 mknod - -rwxr-xr-x 1 root root 26552 Feb 28 2019 mktemp - -rwxr-xr-x 1 root root 26024 Jan 9 2019 more - -rwsr-xr-x 1 root root 34268 Jan 9 2019 mount - -rwxr-xr-x 1 root root 9688 Jan 9 2019 mountpoint - -rwxr-xr-x 1 root root 84284 Feb 28 2019 mv - lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 22416 Feb 28 2019 pwd - lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash - -rwxr-xr-x 1 root root 26504 Feb 28 2019 readlink - -rwxr-xr-x 1 root root 42968 Feb 28 2019 rm - -rwxr-xr-x 1 root root 26496 Feb 28 2019 rmdir - -rwxr-xr-x 1 root root 14136 Jan 21 2019 run-parts - -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jul 1 20:25 sh -> dash - -rwxr-xr-x 1 root root 22384 Feb 28 2019 sleep - -rwxr-xr-x 1 root root 51124 Feb 28 2019 stty - -rwsr-xr-x 1 root root 42472 Jan 9 2019 su - -rwxr-xr-x 1 root root 22392 Feb 28 2019 sync - -rwxr-xr-x 1 root root 283324 Apr 23 2019 tar - -rwxr-xr-x 1 root root 9808 Jan 21 2019 tempfile - -rwxr-xr-x 1 root root 63464 Feb 28 2019 touch - -rwxr-xr-x 1 root root 18260 Feb 28 2019 true - -rwxr-xr-x 1 root root 9636 Apr 22 07:38 ulockmgr_server - -rwsr-xr-x 1 root root 21976 Jan 9 2019 umount - -rwxr-xr-x 1 root root 22380 Feb 28 2019 uname - -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress - -rwxr-xr-x 1 root root 88444 Feb 28 2019 vdir - -rwxr-xr-x 1 root root 21980 Jan 9 2019 wdctl - -rwxr-xr-x 1 root root 946 Jan 21 2019 which - lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat - -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp - -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff - -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep - -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep - -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce - -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep - -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless - -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore - -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew -I: user script /srv/workspace/pbuilder/3993/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 767656 Apr 18 2019 bash + -rwxr-xr-x 3 root root 26052 Jul 11 2019 bunzip2 + -rwxr-xr-x 3 root root 26052 Jul 11 2019 bzcat + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep + -rwxr-xr-x 3 root root 26052 Jul 11 2019 bzip2 + -rwxr-xr-x 1 root root 9636 Jul 11 2019 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore + -rwxr-xr-x 1 root root 22432 Mar 1 2019 cat + -rwxr-xr-x 1 root root 38868 Mar 1 2019 chgrp + -rwxr-xr-x 1 root root 38836 Mar 1 2019 chmod + -rwxr-xr-x 1 root root 42972 Mar 1 2019 chown + -rwxr-xr-x 1 root root 88376 Mar 1 2019 cp + -rwxr-xr-x 1 root root 75516 Jan 18 2019 dash + -rwxr-xr-x 1 root root 71648 Mar 1 2019 date + -rwxr-xr-x 1 root root 51212 Mar 1 2019 dd + -rwxr-xr-x 1 root root 55672 Mar 1 2019 df + -rwxr-xr-x 1 root root 88444 Mar 1 2019 dir + -rwxr-xr-x 1 root root 54872 Jan 10 2019 dmesg + lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname + -rwxr-xr-x 1 root root 22364 Mar 1 2019 echo + -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep + -rwxr-xr-x 1 root root 18260 Mar 1 2019 false + -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep + -rwxr-xr-x 1 root root 47356 Jan 10 2019 findmnt + -rwsr-xr-x 1 root root 21980 Apr 23 09:38 fusermount + -rwxr-xr-x 1 root root 124508 Jan 8 2019 grep + -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip + -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe + -rwxr-xr-x 1 root root 64232 Jan 6 2019 gzip + -rwxr-xr-x 1 root root 13784 Sep 27 2018 hostname + -rwxr-xr-x 1 root root 43044 Mar 1 2019 ln + -rwxr-xr-x 1 root root 34932 Jul 27 2018 login + -rwxr-xr-x 1 root root 88444 Mar 1 2019 ls + -rwxr-xr-x 1 root root 67036 Jan 10 2019 lsblk + -rwxr-xr-x 1 root root 47168 Mar 1 2019 mkdir + -rwxr-xr-x 1 root root 43040 Mar 1 2019 mknod + -rwxr-xr-x 1 root root 26552 Mar 1 2019 mktemp + -rwxr-xr-x 1 root root 26024 Jan 10 2019 more + -rwsr-xr-x 1 root root 34268 Jan 10 2019 mount + -rwxr-xr-x 1 root root 9688 Jan 10 2019 mountpoint + -rwxr-xr-x 1 root root 84284 Mar 1 2019 mv + lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 22416 Mar 1 2019 pwd + lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash + -rwxr-xr-x 1 root root 26504 Mar 1 2019 readlink + -rwxr-xr-x 1 root root 42968 Mar 1 2019 rm + -rwxr-xr-x 1 root root 26496 Mar 1 2019 rmdir + -rwxr-xr-x 1 root root 14136 Jan 22 2019 run-parts + -rwxr-xr-x 1 root root 76012 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Jul 3 14:40 sh -> bash + lrwxrwxrwx 1 root root 4 Jul 2 22:27 sh.distrib -> dash + -rwxr-xr-x 1 root root 22384 Mar 1 2019 sleep + -rwxr-xr-x 1 root root 51124 Mar 1 2019 stty + -rwsr-xr-x 1 root root 42472 Jan 10 2019 su + -rwxr-xr-x 1 root root 22392 Mar 1 2019 sync + -rwxr-xr-x 1 root root 283324 Apr 24 2019 tar + -rwxr-xr-x 1 root root 9808 Jan 22 2019 tempfile + -rwxr-xr-x 1 root root 63464 Mar 1 2019 touch + -rwxr-xr-x 1 root root 18260 Mar 1 2019 true + -rwxr-xr-x 1 root root 9636 Apr 23 09:38 ulockmgr_server + -rwsr-xr-x 1 root root 21976 Jan 10 2019 umount + -rwxr-xr-x 1 root root 22380 Mar 1 2019 uname + -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress + -rwxr-xr-x 1 root root 88444 Mar 1 2019 vdir + -rwxr-xr-x 1 root root 21980 Jan 10 2019 wdctl + -rwxr-xr-x 1 root root 946 Jan 22 2019 which + lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat + -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp + -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff + -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep + -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep + -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce + -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep + -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless + -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore + -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew +I: user script /srv/workspace/pbuilder/14943/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -790,7 +824,7 @@ Get: 560 http://deb.debian.org/debian buster/main armhf texlive-latex-base all 2018.20190227-2 [984 kB] Get: 561 http://deb.debian.org/debian buster/main armhf texlive-latex-recommended all 2018.20190227-2 [15.2 MB] Get: 562 http://deb.debian.org/debian buster/main armhf voro++-dev armhf 0.4.6+dfsg1-3 [131 kB] -Fetched 350 MB in 54s (6531 kB/s) +Fetched 350 MB in 1min 7s (5237 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18932 files and directories currently installed.) @@ -3099,7 +3133,7 @@ fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/lammps-0~20181211.gitad1b1897d+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/lammps-0~20181211.gitad1b1897d+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package lammps dpkg-buildpackage: info: source version 0~20181211.gitad1b1897d+dfsg1-2 dpkg-buildpackage: info: source distribution unstable @@ -5122,11 +5156,11 @@ Converting write_dump.txt ... Converting write_restart.txt ... PAGES: 2442 - BYTES: 16533353 + BYTES: 16533354 make[2]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/doc' make[1]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1' dh_auto_build -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build -Nlammps-doc -Nlammps-data - cd debian/build && make -j5 "INSTALL=install --strip-program=true" + cd debian/build && make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' /usr/bin/cmake -S"/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" -B"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/progress.marks" @@ -5136,15 +5170,12 @@ make -f CMakeFiles/gpu.dir/build.make CMakeFiles/gpu.dir/depend make -f CMakeFiles/meam.dir/build.make CMakeFiles/meam.dir/depend make -f CMakeFiles/awpmd.dir/build.make CMakeFiles/awpmd.dir/depend -make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/depend make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/h5md.dir/DependInfo.cmake" --color= make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' -cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/awpmd.dir/DependInfo.cmake" --color= -make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/meam.dir/DependInfo.cmake" --color= make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' -cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/atc.dir/DependInfo.cmake" --color= +cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/awpmd.dir/DependInfo.cmake" --color= make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/gpu.dir/DependInfo.cmake" --color= Scanning dependencies of target meam @@ -5154,13 +5185,13 @@ Scanning dependencies of target awpmd make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make -f CMakeFiles/awpmd.dir/build.make CMakeFiles/awpmd.dir/build -Scanning dependencies of target h5md make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' +Scanning dependencies of target h5md make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make -f CMakeFiles/h5md.dir/build.make CMakeFiles/h5md.dir/build -make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' [ 0%] Building Fortran object CMakeFiles/meam.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam/meam_data.F.o /usr/bin/gfortran -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam/meam_data.F" -o "CMakeFiles/meam.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam/meam_data.F.o" +make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' [ 0%] Building CXX object CMakeFiles/awpmd.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/src/logexc.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/awpmd.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/src/logexc.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/src/logexc.cpp" [ 0%] Building C object CMakeFiles/h5md.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/src/ch5md.c.o @@ -5179,40 +5210,28 @@ /usr/bin/ar qc libh5md.a "CMakeFiles/h5md.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/src/ch5md.c.o" /usr/bin/ranlib libh5md.a make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' -[ 0%] Building Fortran object CMakeFiles/meam.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam/meam_dens_init.F.o -/usr/bin/gfortran -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam/meam_dens_init.F" -o "CMakeFiles/meam.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam/meam_dens_init.F.o" [ 0%] Built target h5md -make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/depend -make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' -cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/poems.dir/DependInfo.cmake" --color= -Scanning dependencies of target poems -make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' -make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/build +make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/depend make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' -[ 0%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/body.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/body.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/body.cpp" +cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/atc.dir/DependInfo.cmake" --color= +[ 0%] Building Fortran object CMakeFiles/meam.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam/meam_dens_init.F.o +/usr/bin/gfortran -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam/meam_dens_init.F" -o "CMakeFiles/meam.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam/meam_dens_init.F.o" [ 0%] Building CXX object CMakeFiles/awpmd.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG 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-I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/awpmd.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd.cpp" [ 0%] Building Fortran object CMakeFiles/meam.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam/meam_force.F.o /usr/bin/gfortran -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Coupling.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Coupling.cpp" -[ 0%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/body23joint.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" 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-I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/body23joint.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/body23joint.cpp" Scanning dependencies of target gpu make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make -f CMakeFiles/gpu.dir/build.make CMakeFiles/gpu.dir/build make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' [ 0%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_answer.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam/meam_setup_done.F" -o "CMakeFiles/meam.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam/meam_setup_done.F.o" -[ 0%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/colmatmap.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Coupling.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Coupling.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -5221,16 +5240,14 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 0%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/colmatrix.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam/meam_setup_param.F" -o "CMakeFiles/meam.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam/meam_setup_param.F.o" -[ 1%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/eulerparameters.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/eulerparameters.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/eulerparameters.cpp" [ 1%] Linking Fortran static library libmeam.a /usr/bin/cmake -P CMakeFiles/meam.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/meam.dir/link.txt --verbose=1 @@ -5238,15 +5255,15 @@ /usr/bin/ranlib libmeam.a make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' [ 1%] Built target meam -make -f CMakeFiles/ocl_get_devices.dir/build.make CMakeFiles/ocl_get_devices.dir/depend +make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/depend make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' -cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/ocl_get_devices.dir/DependInfo.cmake" --color= -Scanning dependencies of target ocl_get_devices +cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/poems.dir/DependInfo.cmake" --color= +Scanning dependencies of target poems make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' -make -f CMakeFiles/ocl_get_devices.dir/build.make CMakeFiles/ocl_get_devices.dir/build +make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/build make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' -[ 1%] Building CXX object CMakeFiles/ocl_get_devices.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DUCL_OPENCL -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/ocl_get_devices.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp" +[ 1%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/body.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/body.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/body.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -5255,73 +5272,50 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ +[ 1%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/body23joint.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/eulerparameters.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/eulerparameters.cpp" In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_device.h:35, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp:25: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.cpp:16: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ +[ 1%] Building CXX object CMakeFiles/awpmd.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/awpmd.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.cpp" [ 1%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/fastmatrixops.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/fastmatrixops.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/fastmatrixops.cpp" -In file included from /usr/include/c++/8/vector:69, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_device.h:28, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp:25: -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ucl_opencl::OCLProperties&}; _Tp = ucl_opencl::OCLProperties; _Alloc = std::allocator]': -/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 - vector<_Tp, _Alloc>:: - ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/8/vector:64, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_device.h:28, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp:25: -/usr/include/c++/8/bits/stl_vector.h: In member function 'void ucl_opencl::UCL_Device::add_properties(cl_device_id)': -/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - _M_realloc_insert(end(), __x); - ^~~~~~~~~~~~~~~~~ -[ 1%] Linking CXX executable ocl_get_devices -/usr/bin/cmake -E cmake_link_script CMakeFiles/ocl_get_devices.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -rdynamic "CMakeFiles/ocl_get_devices.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp.o" -o ocl_get_devices -lOpenCL -make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' -[ 1%] Built target ocl_get_devices [ 1%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/fixedpoint.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.cpp" +In file included from /usr/include/c++/8/vector:69, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd.h:145, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.h:65, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.cpp:1: +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 + vector<_Tp, _Alloc>:: + ^~~~~~~~~~~~~~~~~~~ +[ 1%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" 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[with _Args = {const Vector_Nt&}; _Tp = Vector_Nt; _Alloc = std::allocator >]': +/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 [ 2%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/joint.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/awpmd.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.cpp" -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.cpp:16: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -[ 2%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/mat4x4.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/mat4x4.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/mat4x4.cpp" -[ 2%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/mat6x6.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -5332,22 +5326,10 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 2%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/onfunctions.cpp.o -In file included from /usr/include/c++/8/vector:69, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd.h:145, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.h:65, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.cpp:1: -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 - vector<_Tp, _Alloc>:: - ^~~~~~~~~~~~~~~~~~~ -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/mat3x3.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/mat3x3.cpp" +[ 2%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/mat4x4.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/mat4x4.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/mat4x4.cpp" In file included from /usr/include/c++/8/vector:69, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, @@ -5391,8 +5373,6 @@ /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ -[ 2%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingEnergy.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingEnergy.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingEnergy.cpp" In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, @@ -5410,8 +5390,6 @@ /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 2%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/poemsobject.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/poemsobject.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/poemsobject.cpp" /usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, @@ -5426,14 +5404,8 @@ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 2%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/poemstreenode.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" 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[with _Args = {WavePacket}; _Tp = WavePacket; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc: In member function 'int AWPMD_split::add_split(Vector_3&, Vector_3&, double&, double&, Vector_2&, double, double, int)': @@ -5450,14 +5422,16 @@ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ -[ 3%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/rigidbody.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dipole.cpp" -[ 3%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/solver.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/solver.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/solver.cpp" +[ 2%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/norm.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/norm.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/norm.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -5468,35 +5442,73 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 3%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/sphericaljoint.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/onsolver.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/onsolver.cpp" +[ 3%] Linking CXX static library libawpmd.a /usr/bin/cmake -P CMakeFiles/awpmd.dir/cmake_clean_target.cmake -[ 4%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingMass.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingMass.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingMass.cpp" /usr/bin/cmake -E cmake_link_script CMakeFiles/awpmd.dir/link.txt --verbose=1 /usr/bin/ar qc libawpmd.a 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.cpp" -[ 4%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/virtualcolmatrix.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/virtualcolmatrix.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/virtualcolmatrix.cpp" +[ 3%] Built target awpmd +make -f CMakeFiles/ocl_get_devices.dir/build.make CMakeFiles/ocl_get_devices.dir/depend +make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' +cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/ocl_get_devices.dir/DependInfo.cmake" --color= +Scanning dependencies of target ocl_get_devices +make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' +make -f CMakeFiles/ocl_get_devices.dir/build.make CMakeFiles/ocl_get_devices.dir/build +make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' +[ 3%] Building CXX object CMakeFiles/ocl_get_devices.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DUCL_OPENCL -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/ocl_get_devices.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp" +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_device.h:35, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp:25: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +[ 3%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingEnergy.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/particle.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/particle.cpp" +In file included from /usr/include/c++/8/vector:69, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_device.h:28, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp:25: +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ucl_opencl::OCLProperties&}; _Tp = ucl_opencl::OCLProperties; _Alloc = std::allocator]': +/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 + vector<_Tp, _Alloc>:: + ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/8/vector:64, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_device.h:28, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp:25: +/usr/include/c++/8/bits/stl_vector.h: In member function 'void ucl_opencl::UCL_Device::add_properties(cl_device_id)': +/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + _M_realloc_insert(end(), __x); + ^~~~~~~~~~~~~~~~~ +[ 3%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/poemsobject.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/poemstreenode.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/poemstreenode.cpp" +[ 3%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/point.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/point.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/point.cpp" +[ 3%] Linking CXX executable ocl_get_devices +/usr/bin/cmake -E cmake_link_script CMakeFiles/ocl_get_devices.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -rdynamic "CMakeFiles/ocl_get_devices.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp.o" -o ocl_get_devices -lOpenCL +[ 4%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/prismaticjoint.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/prismaticjoint.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/prismaticjoint.cpp" +make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/rigidbody.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/rigidbody.cpp" +[ 4%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/rowmatrix.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/rowmatrix.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/rowmatrix.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, @@ -5507,10 +5519,338 @@ /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ +[ 4%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/solver.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/solver.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/solver.cpp" +[ 4%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/sphericaljoint.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/sphericaljoint.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/sphericaljoint.cpp" +[ 4%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/system.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/vect6.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/vect6.cpp" +[ 4%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/virtualcolmatrix.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.cpp" +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_ellipsoid.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_ellipsoid.cpp:16: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.cpp:16: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +[ 4%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingMass.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_beck.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_beck.cpp" +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_beck.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_beck.cpp:24: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +[ 5%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_beck_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_beck_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_beck_ext.cpp" +[ 5%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born.cpp" +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_beck.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_beck_ext.cpp:20: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +[ 5%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long.cpp" +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born.cpp:24: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +[ 5%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_cs.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_cs.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_cs.cpp" +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long.cpp:24: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_cs.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_cs.cpp:24: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +[ 6%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_cs_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf.cpp" +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_cs.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_cs_ext.cpp:20: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_ext.cpp:20: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf.cpp:24: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +[ 6%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_cs.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_cs_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_cs_ext.cpp" +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_cs.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_cs.cpp:24: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_cs.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_cs_ext.cpp:20: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +[ 6%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_ext.cpp" +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_ext.cpp:20: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +[ 6%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck.cpp" +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_ext.cpp:20: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +[ 6%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul.cpp" +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck.cpp:24: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +[ 6%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_ext.cpp" +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul.cpp:24: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_ext.cpp:20: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +[ 6%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long.cpp" +[ 6%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long_ext.cpp" +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long.cpp:24: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +[ 6%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_ext.cpp" +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long_ext.cpp:20: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_ext.cpp:20: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +[ 6%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long.cpp" +[ 6%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid.cpp" +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long.cpp:24: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long_ext.cpp:20: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid.cpp:24: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, @@ -5543,6 +5883,8 @@ /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ +[ 7%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.cpp" +[ 7%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_ellipsoid.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_ellipsoid.cpp:16: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ +[ 7%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_debye.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_debye.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.cpp:16: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul.cpp:24: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_debye.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_debye.cpp:24: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +[ 7%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.cpp" +[ 7%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_debye_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" 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-I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_debye_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_debye_ext.cpp" +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_debye.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_debye_ext.cpp:20: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +[ 7%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_dsf.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_dsf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_dsf.cpp" +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_dsf.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_dsf.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ @@ -5638,8 +6018,6 @@ /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ -[ 5%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_beck.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_beck.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_beck.cpp" In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, @@ -5672,107 +6050,145 @@ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +[ 7%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_dsf_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_dsf_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_dsf_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_beck.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_beck.cpp:24: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -[ 5%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_beck_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_beck_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_beck_ext.cpp" -[ 5%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born.cpp" -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_beck.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_beck_ext.cpp:20: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -[ 5%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.cpp" -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born.cpp:24: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_dsf.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_dsf_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 5%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long.cpp:24: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 5%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferKernel.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferKernel.cpp" +[ 7%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_cs.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_cs.cpp:24: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 5%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp" -[ 6%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_cs_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_cs.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_cs.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_cs.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_cs_ext.cpp:20: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_cs.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_cs.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 6%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_cs_ext.cpp" +In file included from /usr/include/c++/8/vector:69, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:5, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.cpp:2: +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': +/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 + vector<_Tp, _Alloc>:: + ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': +/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + _M_realloc_insert(end(), std::forward<_Args>(__args)...); + ^~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/8/algorithm:62, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.cpp:2: +/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': +/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + __unguarded_linear_insert(_RandomAccessIterator __last, + ^~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': +/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + __insertion_sort(_RandomAccessIterator __first, + ^~~~~~~~~~~~~~~~ +/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +In file included from /usr/include/c++/8/bits/stl_algo.h:61, + from /usr/include/c++/8/algorithm:62, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.cpp:2: +/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': +/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, + ^~~~~~~~~~~~~ +In file included from /usr/include/c++/8/algorithm:62, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.cpp:2: +/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': +/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + __introsort_loop(_RandomAccessIterator __first, + ^~~~~~~~~~~~~~~~ +/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + std::__introsort_loop(__cut, __last, __depth_limit, __comp); + ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': +/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + std::__introsort_loop(__first, __last, + ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + std::__lg(__last - __first) * 2, + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __comp); + ~~~~~~~ +/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + std::__insertion_sort(__first, __last, __comp); + ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_ext.cpp:20: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_cs.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_cs_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 6%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf.cpp" In file included from /usr/include/c++/8/vector:69, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, @@ -5819,17 +6235,6 @@ /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf.cpp:24: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, @@ -5848,6 +6253,8 @@ /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 7%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_ext.cpp" /usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, @@ -5862,6 +6269,17 @@ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_ext.cpp:20: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, @@ -5869,8 +6287,7 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.h:6, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.h:5, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp:2: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, @@ -5888,8 +6305,7 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.h:6, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.h:5, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp:2: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, @@ -5901,8 +6317,7 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.h:6, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.h:5, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp:2: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, @@ -5912,6 +6327,8 @@ /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 7%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomToMoleculeTransfer.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomToMoleculeTransfer.cpp" -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_cs.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_cs.cpp:24: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_cs.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_cs_ext.cpp:20: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -[ 6%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.cpp" -[ 6%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_ext.cpp" -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_ext.cpp:20: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -[ 6%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_ext.cpp" +[ 7%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_ext.cpp:20: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.cpp:16: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/c++/8/vector:69, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.cpp:2: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.h:6, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.cpp:2: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ -[ 6%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck.cpp" -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': +/usr/include/c++/8/bits/vector.tcc: In member function 'void ATC_matrix::SparseMatrix::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]': /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ +[ 7%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomToMoleculeTransfer.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomToMoleculeTransfer.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomToMoleculeTransfer.cpp" In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.cpp:2: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.h:6, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.h:5, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, @@ -6021,7 +6394,9 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.cpp:2: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.h:6, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.h:5, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, @@ -6031,64 +6406,10 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantity.h:7, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferOperator.h:6, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomToMoleculeTransfer.h:9, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomToMoleculeTransfer.cpp:2: -/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': -/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - __unguarded_linear_insert(_RandomAccessIterator __last, - ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/8/algorithm:62, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.cpp:2: -/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': -/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - __introsort_loop(_RandomAccessIterator __first, - ^~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - std::__introsort_loop(__cut, __last, __depth_limit, __comp); - ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': -/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - __insertion_sort(_RandomAccessIterator __first, - ^~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -In file included from /usr/include/c++/8/bits/stl_algo.h:61, - from /usr/include/c++/8/algorithm:62, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantity.h:7, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferOperator.h:6, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomToMoleculeTransfer.h:9, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomToMoleculeTransfer.cpp:2: -/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': -/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, - ^~~~~~~~~~~~~ -In file included from /usr/include/c++/8/algorithm:62, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantity.h:7, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferOperator.h:6, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomToMoleculeTransfer.h:9, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomToMoleculeTransfer.cpp:2: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.h:6, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.h:5, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, @@ -6098,20 +6419,8 @@ /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': -/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - std::__introsort_loop(__first, __last, - ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - std::__lg(__last - __first) * 2, - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __comp); - ~~~~~~~ -/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - std::__insertion_sort(__first, __last, __comp); - ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +[ 7%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj.cpp" /usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, @@ -6131,26 +6440,51 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck.cpp:24: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dipole.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ +In file included from /usr/include/c++/8/vector:69, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_device.h:28, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:28, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.cpp:16: +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ucl_opencl::OCLProperties&}; _Tp = ucl_opencl::OCLProperties; _Alloc = std::allocator]': +/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 + vector<_Tp, _Alloc>:: + ^~~~~~~~~~~~~~~~~~~ +[ 7%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.cpp" +In file included from /usr/include/c++/8/vector:64, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_device.h:28, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:28, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.cpp:16: +/usr/include/c++/8/bits/stl_vector.h: In member function 'void ucl_opencl::UCL_Device::add_properties(cl_device_id)': +/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + _M_realloc_insert(end(), __x); + ^~~~~~~~~~~~~~~~~ +[ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_ext.cpp" In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.h:6, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.cpp:2: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantity.h:7, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferOperator.h:6, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomToMoleculeTransfer.h:9, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomToMoleculeTransfer.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 6%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul.cpp" /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, @@ -6162,9 +6496,12 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.h:6, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.cpp:2: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantity.h:7, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferOperator.h:6, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomToMoleculeTransfer.h:9, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomToMoleculeTransfer.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, @@ -6174,9 +6511,12 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.h:6, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.cpp:2: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantity.h:7, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferOperator.h:6, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomToMoleculeTransfer.h:9, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomToMoleculeTransfer.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, @@ -6200,42 +6540,96 @@ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +[ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul.cpp:24: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dipole.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 6%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/BodyForce.cpp.o +[ 8%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/BodyForce.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/BodyForce.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/BodyForce.cpp" -In file included from /usr/include/c++/8/vector:69, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:5, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.h:6, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.cpp:2: -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': -/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 - vector<_Tp, _Alloc>:: - ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/vector.tcc: In member function 'void ATC_matrix::SparseMatrix::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]': -/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - _M_realloc_insert(end(), std::forward<_Args>(__args)...); - ^~~~~~~~~~~~~~~~~ -[ 6%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_ext.cpp:20: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dipole.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf.cpp:24: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +[ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf_ext.cpp" +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dipole.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf_ext.cpp:20: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +[ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_long_lj.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_long_lj.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_long_lj.cpp" +[ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_long_lj_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_long_lj_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_long_lj_ext.cpp" +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dipole.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_long_lj.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_long_lj_ext.cpp:20: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dipole.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_long_lj.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_long_lj.cpp:24: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +[ 8%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/CBLattice.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/CBLattice.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/CBLattice.cpp" +[ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd.cpp" +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dpd.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd.cpp:24: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +[ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd_ext.cpp" +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dpd.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ @@ -6310,135 +6704,140 @@ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 6%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_alloy_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_alloy_ext.cpp" +In file included from /usr/include/c++/8/vector:69, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/CBLattice.h:5, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/CBLattice.cpp:1: +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 + vector<_Tp, _Alloc>:: + ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + _M_realloc_insert(end(), std::forward<_Args>(__args)...); + ^~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long.cpp:24: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 6%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long_ext.cpp" -[ 6%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long_ext.cpp:20: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_alloy_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 6%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/CauchyBorn.cpp.o +[ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ChargeRegulator.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ChargeRegulator.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_ext.cpp:20: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 7%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ConcentrationRegulator.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ConcentrationRegulator.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ConcentrationRegulator.cpp" -[ 7%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long.cpp" -In file included from /usr/include/c++/8/vector:69, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/CBLattice.h:5, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/CBLattice.cpp:1: -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 - vector<_Tp, _Alloc>:: - ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - _M_realloc_insert(end(), std::forward<_Args>(__args)...); - ^~~~~~~~~~~~~~~~~ +[ 9%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ChargeRegulator.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ChargeRegulator.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ChargeRegulator.cpp" +[ 9%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_fs_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_fs_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_fs_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long.cpp:24: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_fs_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 7%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long_ext.cpp" -[ 7%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElasticTimeIntegrator.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElasticTimeIntegrator.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElasticTimeIntegrator.cpp" +[ 9%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long_ext.cpp:20: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid.cpp" +[ 9%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss_ext.cpp" +[ 9%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid.cpp:24: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid_ext.cpp:20: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_ellipsoid.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne.cpp:27: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 8%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronChargeDensity.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronChargeDensity.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronChargeDensity.cpp" -[ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne_ext.cpp" +[ 9%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ConcentrationRegulator.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ConcentrationRegulator.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ConcentrationRegulator.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul.cpp:24: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_ellipsoid.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne_ext.cpp:20: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +[ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj.cpp" +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ @@ -6451,6 +6850,8 @@ /usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree, double> >, std::_Select1st, double> > >, std::less, std::allocator, double> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator, double> > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96.cpp" In file included from /usr/include/c++/8/map:61, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.h:6, @@ -6506,6 +6907,154 @@ /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': +/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + std::__introsort_loop(__first, __last, + ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + std::__lg(__last - __first) * 2, + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __comp); + ~~~~~~~ +/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + std::__insertion_sort(__first, __last, __comp); + ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +[ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96_ext.cpp" +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96.cpp:24: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96_ext.cpp:20: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +[ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long.cpp" +[ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElasticTimeIntegrator.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElasticTimeIntegrator.cpp" +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long.cpp:24: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long_ext.cpp:20: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +[ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul.cpp" +[ 10%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronChargeDensity.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye.cpp" +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul.cpp:24: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye.cpp:24: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +[ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye_ext.cpp" +[ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_ext.cpp" +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye_ext.cpp:20: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_ext.cpp:20: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +[ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long.cpp" +[ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long_ext.cpp" +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long.cpp:24: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +[ 10%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronDragPower.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronDragPower.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronDragPower.cpp" +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long_ext.cpp:20: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, @@ -6570,75 +7119,74 @@ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': -/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - std::__introsort_loop(__first, __last, - ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - std::__lg(__last - __first) * 2, - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __comp); - ~~~~~~~ -/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - std::__insertion_sort(__first, __last, __comp); - ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_debye.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_debye.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_debye.cpp:24: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_debye_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_debye_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_debye_ext.cpp" -[ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_dsf.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronFlux.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronFlux.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronFlux.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_debye.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_debye_ext.cpp:20: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 8%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronFlux.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_cubic_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_cubic_ext.cpp" +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_cubic.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_cubic.cpp:24: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +[ 11%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronHeatCapacity.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronHeatCapacity.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronHeatCapacity.cpp" -[ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_dsf_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_dsf_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_dsf_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_dsf.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_dsf.cpp:24: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_cubic.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_cubic_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_ext.cpp" +[ 11%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_dsf.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_dsf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_dsf.cpp" +[ 11%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_dsf_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_dsf_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_dsf_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_dsf.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_dsf_ext.cpp:20: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_dsf.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_dsf.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ @@ -6648,134 +7196,205 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_ext.cpp:20: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_dsf.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_dsf_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 8%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronHeatFlux.cpp.o +[ 11%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronHeatFlux.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronHeatFlux.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronHeatFlux.cpp" -[ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT 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"CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand.cpp" +[ 11%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_coul_long.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_coul_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_coul_long.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long.cpp:24: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ +[ 11%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronPhononExchange.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronPhononExchange.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronPhononExchange.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_cs.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_cs.cpp:24: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_coul_long.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_coul_long.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_cs_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_cs_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_cs_ext.cpp" -[ 8%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronPhononExchange.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_coul_long_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_coul_long_ext.cpp" +[ 11%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_cs.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_cs_ext.cpp:20: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_coul_long.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_coul_long_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_ext.cpp" -[ 8%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModel.cpp.o +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_ext.cpp:20: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +[ 11%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_ext.cpp" +[ 11%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_gromacs.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModel.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModel.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModel.cpp" -[ 8%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.cpp.o +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_ext.cpp:20: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_gromacs.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_gromacs.cpp:24: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +[ 11%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_gromacs_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_gromacs_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_gromacs_ext.cpp" +[ 11%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_ext.cpp:20: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_gromacs.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_gromacs_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.cpp" +[ 11%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk.cpp" +[ 11%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.cpp:16: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 8%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp" -[ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dipole.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj.cpp:24: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 8%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.cpp" -In file included from /usr/include/c++/8/vector:69, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_device.h:28, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:28, +[ 11%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long.cpp" +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.cpp:16: -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ucl_opencl::OCLProperties&}; _Tp = ucl_opencl::OCLProperties; _Alloc = std::allocator]': -/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 - vector<_Tp, _Alloc>:: - ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/8/vector:64, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_device.h:28, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:28, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long.cpp:24: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +[ 11%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long_ext.cpp" +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.cpp:16: -/usr/include/c++/8/bits/stl_vector.h: In member function 'void ucl_opencl::UCL_Device::add_properties(cl_device_id)': -/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - _M_realloc_insert(end(), __x); - ^~~~~~~~~~~~~~~~~ -[ 9%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_ext.cpp" + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long_ext.cpp:20: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +[ 11%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie.cpp" +[ 12%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie_ext.cpp" +[ 12%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dipole.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_ext.cpp:20: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie.cpp:24: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ +[ 12%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse.cpp" +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse.cpp:24: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +[ 12%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse_ext.cpp" In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, @@ -6840,10 +7459,21 @@ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 9%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Element.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Element.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Element.cpp" -[ 9%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf.cpp" +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse_ext.cpp:20: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +[ 12%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor.cpp" +[ 12%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor_shared.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor_shared.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor_shared.cpp" In file included from /usr/include/c++/8/vector:69, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.cpp:2: @@ -6857,13 +7487,45 @@ _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_device.h:35, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_kernel.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor_shared.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor_shared.cpp:17: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor.cpp:18: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +[ 12%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm.cpp" +[ 12%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.cpp" +In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dipole.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf.cpp:24: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm.cpp:25: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +[ 12%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm_ext.cpp" +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm.h:20, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ @@ -6875,8 +7537,8 @@ /usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree, double> >, std::_Select1st, double> > >, std::less, std::allocator, double> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator, double> > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 9%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf_ext.cpp" +[ 12%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_re_squared.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_re_squared.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_re_squared.cpp" In file included from /usr/include/c++/8/map:61, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModel.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelElectrostatic.h:7, @@ -6884,8 +7546,6 @@ /usr/include/c++/8/bits/stl_map.h: In member function 'void ATC::ExtrinsicModelElectrostatic::add_charged_surface(const string&, double)': /usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, double> >, std::_Select1st, double> > >, std::less, std::allocator, double> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator, double> > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, -[ 10%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.cpp" In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, @@ -6903,6 +7563,17 @@ __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_ellipsoid.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_re_squared.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_re_squared.cpp:27: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, @@ -6947,19 +7618,19 @@ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +[ 12%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_re_squared_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_re_squared_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_re_squared_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dipole.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf_ext.cpp:20: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_ellipsoid.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_re_squared.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_re_squared_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_long_lj.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_long_lj.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_long_lj.cpp" In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, @@ -7021,64 +7692,105 @@ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 10%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Interpolate.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Interpolate.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Interpolate.cpp" +[ 12%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_soft.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_soft.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_soft.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dipole.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_long_lj.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_long_lj.cpp:24: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_soft.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_soft.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 10%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Mesh.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Mesh.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Mesh.cpp" -[ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_long_lj_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Element.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Element.cpp" +[ 13%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dipole.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_long_lj.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_long_lj_ext.cpp:20: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_soft.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_soft_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd.cpp" +[ 13%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw.cpp" +[ 13%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dpd.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd.cpp:24: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dpd.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd_ext.cpp:20: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw_ext.cpp:20: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +[ 13%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Interpolate.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Interpolate.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Interpolate.cpp" +[ 13%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table.cpp" +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table.cpp:24: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +[ 13%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Mesh.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Mesh.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Mesh.cpp" +[ 14%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table_ext.cpp" +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table_ext.cpp:20: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +[ 14%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff.cpp" +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam.cpp" In file included from /usr/include/c++/8/vector:69, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Element.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Mesh.cpp:2: @@ -7087,38 +7799,59 @@ vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 +/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + _M_realloc_insert(end(), std::forward<_Args>(__args)...); + ^~~~~~~~~~~~~~~~~ +[ 14%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam.cpp:24: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ +[ 14%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.cpp" In file included from /usr/include/c++/8/vector:69, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:17, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.h:5, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.cpp:1: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.h:4, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.cpp:1: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/vector.tcc: In member function 'void ATC_matrix::SparseMatrix::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]': +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ +[ 14%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod.cpp" +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod.cpp:24: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.h:5, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.cpp:1: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.h:9, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, @@ -7133,9 +7866,9 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.h:5, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.cpp:1: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.h:9, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.cpp:1: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, @@ -7144,9 +7877,9 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.h:5, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.cpp:1: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.h:9, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, @@ -7170,28 +7903,6 @@ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 -/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - _M_realloc_insert(end(), std::forward<_Args>(__args)...); - ^~~~~~~~~~~~~~~~~ -[ 10%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldManager.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Function.cpp" -In file included from /usr/include/c++/8/vector:69, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.h:4, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.cpp:1: -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': -/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 - vector<_Tp, _Alloc>:: - ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': -/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - _M_realloc_insert(end(), std::forward<_Args>(__args)...); - ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Element.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Mesh.cpp:2: @@ -7215,13 +7926,44 @@ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ +[ 14%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod_ext.cpp" +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod_ext.cpp:20: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +[ 14%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldManager.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldManager.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldManager.cpp" +[ 14%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl.cpp" +In file included from /usr/include/c++/8/vector:69, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:17, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.h:5, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.cpp:1: +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': +/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 + vector<_Tp, _Alloc>:: + ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/8/bits/vector.tcc: In member function 'void ATC_matrix::SparseMatrix::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]': +/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + _M_realloc_insert(end(), std::forward<_Args>(__args)...); + ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.h:9, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.cpp:1: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.h:5, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, @@ -7231,14 +7973,25 @@ __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl.cpp:24: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.h:9, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.cpp:1: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.h:5, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.cpp:1: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, @@ -7247,9 +8000,9 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.h:9, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.cpp:1: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.h:5, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, @@ -7273,49 +8026,40 @@ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_alloy_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_alloy_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_alloy_ext.cpp" -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_alloy_ext.cpp:20: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -[ 10%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FundamentalAtomicQuantity.cpp.o +[ 14%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Function.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Function.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Function.cpp" +[ 14%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FundamentalAtomicQuantity.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_ext.cpp:20: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_fs_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_fs_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_fs_ext.cpp" +[ 14%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm.cpp" +[ 14%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/GhostManager.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/GhostManager.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/GhostManager.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_fs_ext.cpp:20: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm.h:21, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm.cpp:26: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ +[ 14%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ImplicitSolveOperator.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ImplicitSolveOperator.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ImplicitSolveOperator.cpp" In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, @@ -7344,8 +8088,6 @@ /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ -[ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss.cpp" In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, @@ -7376,19 +8118,8 @@ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss.cpp:24: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -[ 10%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ImplicitSolveOperator.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ImplicitSolveOperator.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ImplicitSolveOperator.cpp" +[ 14%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm_ext.cpp" In file included from /usr/include/c++/8/vector:69, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldManager.h:6, @@ -7402,20 +8133,29 @@ /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ -[ 10%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/InterscaleOperators.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/InterscaleOperators.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/InterscaleOperators.cpp" -[ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO 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-I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" 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"CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss_ext.cpp" -[ 10%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss_ext.cpp:20: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm.h:21, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm_ext.cpp:22: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +[ 14%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta.cpp" +[ 14%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/InterscaleOperators.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/InterscaleOperators.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/InterscaleOperators.cpp" +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ @@ -7430,66 +8170,36 @@ /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ -[ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne.cpp" /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_ellipsoid.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne.cpp:27: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -In file included from /usr/include/c++/8/vector:69, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:17, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.h:4, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp:1: -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Node&}; _Tp = Node; _Alloc = std::allocator]': -/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 - vector<_Tp, _Alloc>:: - ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator]': -/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.h:4, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp:1: -/usr/include/c++/8/bits/stl_algo.h: In function '_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val]': -/usr/include/c++/8/bits/stl_algo.h:112:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - __find_if(_RandomAccessIterator __first, _RandomAccessIterator __last, - ^~~~~~~~~ -/usr/include/c++/8/bits/stl_algo.h:112:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': -/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ImplicitSolveOperator.h:5, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ImplicitSolveOperator.cpp:2: +/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': +/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': -/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': +/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.h:4, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp:1: -/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = Node; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': -/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ImplicitSolveOperator.h:5, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ImplicitSolveOperator.cpp:2: +/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': +/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, @@ -7497,27 +8207,33 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.h:4, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp:1: -/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': -/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - __heap_select(_RandomAccessIterator __first, - ^~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': -/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ImplicitSolveOperator.h:5, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ImplicitSolveOperator.cpp:2: +/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': +/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - std::__heap_select(__first, __middle, __last, __comp); - ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': +/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + std::__introsort_loop(__first, __last, + ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + std::__lg(__last - __first) * 2, + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __comp); + ~~~~~~~ +/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + std::__insertion_sort(__first, __last, __comp); + ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +[ 14%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta_ext.cpp" In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, @@ -7537,55 +8253,6 @@ /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_algo.h: In constructor 'KD_Tree::KD_Tree(std::vector*, std::vector > >*, int)': -/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - std::__introsort_loop(__first, __last, - ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - std::__lg(__last - __first) * 2, - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __comp); - ~~~~~~~ -/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - std::__insertion_sort(__first, __last, __comp); - ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_algo.h:161:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - return __find_if(__first, __last, __pred, - ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ - std::__iterator_category(__first)); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/8/vector:64, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:17, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.h:4, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp:1: -/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - _M_realloc_insert(end(), __x); - ^~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/8/algorithm:62, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.h:4, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp:1: -/usr/include/c++/8/bits/stl_algo.h:161:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - return __find_if(__first, __last, __pred, - ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ - std::__iterator_category(__first)); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/8/vector:64, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:17, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.h:4, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp:1: -/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - _M_realloc_insert(end(), __x); - ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, std::pair)>]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, @@ -7651,53 +8318,79 @@ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta_ext.cpp:20: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ +[ 14%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa.cpp" +[ 14%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" 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-DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KernelFunction.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KernelFunction.cpp" +In file included from /usr/include/CL/cl.h:32, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa.cpp:24: +/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) + #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") + ^ In file included from /usr/include/c++/8/vector:69, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:17, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp:1: -/usr/include/c++/8/bits/vector.tcc: In static member function 'static KD_Tree* KD_Tree::create_KD_tree(int, int, const DENS_MAT*, int, const ATC_matrix::Array2D&)': -/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - _M_realloc_insert(end(), std::forward<_Args>(__args)...); - ^~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/8/vector:64, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:17, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.h:4, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp:1: -/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - _M_realloc_insert(end(), __x); - ^~~~~~~~~~~~~~~~~ -[ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne_ext.cpp" +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Node&}; _Tp = Node; _Alloc = std::allocator]': +/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 + vector<_Tp, _Alloc>:: + ^~~~~~~~~~~~~~~~~~~ +[ 14%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid.cpp" +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator]': +/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ImplicitSolveOperator.h:5, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ImplicitSolveOperator.cpp:2: -/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': -/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.h:4, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp:1: +/usr/include/c++/8/bits/stl_algo.h: In function '_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val]': +/usr/include/c++/8/bits/stl_algo.h:112:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + __find_if(_RandomAccessIterator __first, _RandomAccessIterator __last, + ^~~~~~~~~ +/usr/include/c++/8/bits/stl_algo.h:112:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': +/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': -/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': +/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ImplicitSolveOperator.h:5, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ImplicitSolveOperator.cpp:2: -/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': -/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.h:4, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp:1: +/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = Node; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': +/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, @@ -7705,143 +8398,151 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ImplicitSolveOperator.h:5, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ImplicitSolveOperator.cpp:2: -/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': -/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.h:4, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp:1: +/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': +/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + __heap_select(_RandomAccessIterator __first, + ^~~~~~~~~~~~~ +/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': +/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': -/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + std::__heap_select(__first, __middle, __last, __comp); + ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/8/bits/stl_algo.h: In constructor 'KD_Tree::KD_Tree(std::vector*, std::vector > >*, int)': +/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ -/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_ellipsoid.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne_ext.cpp:20: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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-I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96.cpp" +/usr/include/c++/8/bits/stl_algo.h:161:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + return __find_if(__first, __last, __pred, + ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ + std::__iterator_category(__first)); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/8/vector:64, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:17, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.h:4, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp:1: +/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + _M_realloc_insert(end(), __x); + ^~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/8/algorithm:62, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.h:4, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp:1: +/usr/include/c++/8/bits/stl_algo.h:161:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + return __find_if(__first, __last, __pred, + ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ + std::__iterator_category(__first)); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/8/vector:64, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:17, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.h:4, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp:1: +/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + _M_realloc_insert(end(), __x); + ^~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/8/vector:69, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:17, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.h:4, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp:1: +/usr/include/c++/8/bits/vector.tcc: In static member function 'static KD_Tree* KD_Tree::create_KD_tree(int, int, const DENS_MAT*, int, const ATC_matrix::Array2D&)': +/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + _M_realloc_insert(end(), std::forward<_Args>(__args)...); + ^~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/8/vector:64, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:17, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.h:4, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp:1: +/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + _M_realloc_insert(end(), __x); + ^~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj.cpp:24: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 11%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KinetoThermostat.cpp.o +[ 14%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KinetoThermostat.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.cpp" +[ 15%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96.cpp:24: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 11%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" 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CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96_ext.cpp:20: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long.cpp:24: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -[ 11%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Kinetostat.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Kinetostat.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Kinetostat.cpp" -[ 11%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long_ext.cpp" -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long_ext.cpp:20: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -[ 11%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul.cpp" -[ 11%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye.cpp" -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul.cpp:24: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ +[ 16%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_zbl.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_zbl.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_zbl.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye.cpp:24: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_zbl.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_zbl.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 12%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.cpp" -[ 12%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye_ext.cpp" In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, @@ -7859,6 +8560,14 @@ __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +In file included from /usr/include/c++/8/vector:69, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:5, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.cpp:2: +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': +/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 + vector<_Tp, _Alloc>:: + ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, @@ -7872,6 +8581,26 @@ /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': +/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + _M_realloc_insert(end(), std::forward<_Args>(__args)...); + ^~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/8/algorithm:62, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.cpp:2: +/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': +/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + __unguarded_linear_insert(_RandomAccessIterator __last, + ^~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': +/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + __insertion_sort(_RandomAccessIterator __first, + ^~~~~~~~~~~~~~~~ +/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, @@ -7889,6 +8618,34 @@ /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/8/bits/stl_algo.h:61, + from /usr/include/c++/8/algorithm:62, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.cpp:2: +/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': +/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, + ^~~~~~~~~~~~~ +In file included from /usr/include/c++/8/algorithm:62, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.cpp:2: +/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': +/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + __introsort_loop(_RandomAccessIterator __first, + ^~~~~~~~~~~~~~~~ +/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + std::__introsort_loop(__cut, __last, __depth_limit, __comp); + ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, @@ -7903,94 +8660,58 @@ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 12%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_ext.cpp" -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye_ext.cpp:20: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_ext.cpp:20: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -[ 12%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long.cpp" -[ 12%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long_ext.cpp" -[ 12%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LinearSolver.cpp.o +/usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': +/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + std::__introsort_loop(__first, __last, + ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + std::__lg(__last - __first) * 2, + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __comp); + ~~~~~~~ +/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + std::__insertion_sort(__first, __last, __comp); + ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +[ 16%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_zbl_ext.cpp.o +/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MPI_Wrappers.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MPI_Wrappers.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long.cpp:24: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long_ext.cpp:20: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_zbl.h:19, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_zbl_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ -[ 12%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm.cpp" -In file included from /usr/include/c++/8/vector:69, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:5, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.cpp:2: -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': -/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 - vector<_Tp, _Alloc>:: - ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Material.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Material.cpp" In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.cpp:2: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.h:6, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Kinetostat.h:4, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Kinetostat.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm.cpp:24: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, @@ -8002,21 +8723,21 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.cpp:2: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.h:6, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Kinetostat.h:4, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Kinetostat.cpp:1: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ -[ 12%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm_ext.cpp" In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.cpp:2: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.h:6, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Kinetostat.h:4, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Kinetostat.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, @@ -8040,45 +8761,8 @@ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm_ext.cpp:20: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -[ 12%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_cubic.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MPI_Wrappers.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MPI_Wrappers.cpp" -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_cubic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_cubic.cpp:24: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_cubic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_cubic_ext.cpp:20: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ +[ 16%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.cpp" In file included from /usr/include/c++/8/vector:69, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LinearSolver.h:5, @@ -8124,23 +8808,6 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.h:6, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Kinetostat.h:4, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Kinetostat.cpp:1: -/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': -/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - __unguarded_linear_insert(_RandomAccessIterator __last, - ^~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': -/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - __insertion_sort(_RandomAccessIterator __first, - ^~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -In file included from /usr/include/c++/8/algorithm:62, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LinearSolver.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LinearSolver.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': @@ -8152,36 +8819,6 @@ /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/8/bits/stl_algo.h:61, - from /usr/include/c++/8/algorithm:62, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.h:6, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Kinetostat.h:4, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Kinetostat.cpp:1: -/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': -/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, - ^~~~~~~~~~~~~ -In file included from /usr/include/c++/8/algorithm:62, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.h:6, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Kinetostat.h:4, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Kinetostat.cpp:1: -/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': -/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - __introsort_loop(_RandomAccessIterator __first, - ^~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - std::__introsort_loop(__cut, __last, __depth_limit, __comp); - ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, @@ -8196,284 +8833,16 @@ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': -/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - std::__introsort_loop(__first, __last, - ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - std::__lg(__last - __first) * 2, - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __comp); - ~~~~~~~ -/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - std::__insertion_sort(__first, __last, __comp); - ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 13%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_dsf.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_dsf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_dsf.cpp" -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_dsf.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_dsf.cpp:24: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -[ 13%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Material.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand.cpp" -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_dsf.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_dsf_ext.cpp:20: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -[ 13%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_coul_long.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_coul_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_coul_long.cpp" -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand.cpp:24: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -[ 13%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_coul_long_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_coul_long_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_coul_long_ext.cpp" -[ 13%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.cpp" -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_coul_long.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_coul_long.cpp:24: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_coul_long.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_coul_long_ext.cpp:20: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -[ 13%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_ext.cpp" -[ 13%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl 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CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_gromacs.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_gromacs.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_gromacs.cpp" -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_ext.cpp:20: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_ext.cpp:20: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -[ 13%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MeshReader.cpp.o +[ 16%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MeshReader.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MeshReader.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MeshReader.cpp" -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_gromacs.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_gromacs.cpp:24: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -[ 13%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_gromacs_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_gromacs_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_gromacs_ext.cpp" -[ 13%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk.cpp" -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_gromacs.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_gromacs_ext.cpp:20: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk.cpp:24: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -[ 13%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_ext.cpp" -[ 13%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long.cpp" -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_ext.cpp:20: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long.cpp:24: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -[ 13%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long_ext.cpp" -[ 13%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie.cpp" -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long_ext.cpp:20: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie.cpp:24: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -[ 14%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie_ext.cpp" -[ 14%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse.cpp" -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie_ext.cpp:20: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -[ 14%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MoleculeSet.cpp.o +[ 16%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MoleculeSet.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MoleculeSet.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MoleculeSet.cpp" -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse.cpp:24: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -[ 14%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse_ext.cpp" -[ 14%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/NonLinearSolver.cpp.o +[ 16%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/NonLinearSolver.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/NonLinearSolver.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/NonLinearSolver.cpp" -[ 14%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor.cpp" -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse_ext.cpp:20: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor.cpp:18: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -[ 14%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor_shared.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor_shared.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor_shared.cpp" -[ 14%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm.cpp" -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_device.h:35, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_kernel.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor_shared.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor_shared.cpp:17: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm.cpp:25: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ +[ 16%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/OutputManager.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/OutputManager.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/OutputManager.cpp" +[ 16%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PaqAtcUtility.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PaqAtcUtility.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PaqAtcUtility.cpp" In file included from /usr/include/c++/8/vector:69, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/NonLinearSolver.h:5, @@ -8497,8 +8866,6 @@ /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 14%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm_ext.cpp" /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, @@ -8546,41 +8913,14 @@ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm.h:20, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm_ext.cpp:20: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -[ 14%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/OutputManager.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/OutputManager.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/OutputManager.cpp" -[ 14%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PaqAtcUtility.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_re_squared.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_re_squared.cpp" -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_ellipsoid.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_re_squared.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_re_squared.cpp:27: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -[ 14%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ParSparseMatrix.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ParSparseMatrix.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ParSparseMatrix.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/OutputManager.cpp: In member function 'void ATC::OutputManager::read_restart_file(std::__cxx11::string, ATC::RESTART_LIST*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/OutputManager.cpp:164:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&myVal,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 16%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ParDiagonalMatrix.cpp.o 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ParDiagonalMatrix.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ParDiagonalMatrix.cpp" +[ 16%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ParSparseMatrix.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ParSparseMatrix.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ParSparseMatrix.cpp" In file included from /usr/include/c++/8/vector:69, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/OutputManager.h:4, @@ -8589,21 +8929,10 @@ /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ -[ 14%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_re_squared_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp" -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_ellipsoid.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_re_squared.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_re_squared_ext.cpp:20: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ +[ 16%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerPairQuantity.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerPairQuantity.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerPairQuantity.cpp" In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, @@ -8668,32 +8997,6 @@ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 14%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_soft.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_soft.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_soft.cpp" -[ 14%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_soft_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_soft_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_soft_ext.cpp" -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_soft.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_soft.cpp:24: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_soft.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_soft_ext.cpp:20: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ In file included from /usr/include/c++/8/vector:69, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:17, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.h:3, @@ -8719,64 +9022,10 @@ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ -[ 14%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw.cpp" -[ 14%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerPairQuantity.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" 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-DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw_ext.cpp" -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw.cpp:24: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw_ext.cpp:20: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -[ 14%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.cpp.o +[ 16%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.cpp" -[ 14%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table.cpp" -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table.cpp:24: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -[ 15%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table_ext.cpp" -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table_ext.cpp:20: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -[ 15%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff.cpp" +[ 17%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.cpp" In file included from /usr/include/c++/8/vector:69, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, @@ -8851,54 +9100,17 @@ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff.cpp:24: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -[ 15%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_ext.cpp" -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_ext.cpp:20: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -[ 16%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.cpp" -[ 16%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" 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-I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod.cpp" -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod.cpp:24: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -[ 16%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod_ext.cpp" +[ 17%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PolynomialSolver.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PolynomialSolver.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PolynomialSolver.cpp" +[ 17%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PrescribedDataManager.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PrescribedDataManager.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PrescribedDataManager.cpp" In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.h:7, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.cpp:1: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.h:5, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, @@ -8914,8 +9126,8 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.h:7, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.cpp:1: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.h:5, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.cpp:1: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, @@ -8925,8 +9137,8 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.h:7, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.cpp:1: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.h:5, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, @@ -8950,20 +9162,12 @@ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod_ext.cpp:20: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ In file included from /usr/include/c++/8/vector:69, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.h:5, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.cpp:1: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:17, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.h:5, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.cpp:1: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: @@ -8972,42 +9176,13 @@ /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ -[ 16%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl.cpp" -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl.cpp:24: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -In file included from /usr/include/c++/8/vector:69, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:5, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantity.h:7, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp:2: -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': -/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 - vector<_Tp, _Alloc>:: - ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': -/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - _M_realloc_insert(end(), std::forward<_Args>(__args)...); - ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantity.h:7, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp:2: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.h:7, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, @@ -9022,11 +9197,9 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantity.h:7, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp:2: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.h:7, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.cpp:1: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, @@ -9035,11 +9208,9 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantity.h:7, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp:2: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.h:7, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, @@ -9063,32 +9234,44 @@ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 16%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PolynomialSolver.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PrescribedDataManager.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PrescribedDataManager.cpp" -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl_ext.cpp:20: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -[ 16%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm.cpp" +[ 17%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Quadrature.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Quadrature.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Quadrature.cpp" +In file included from /usr/include/c++/8/vector:69, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.h:5, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.cpp:1: +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': +/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 + vector<_Tp, _Alloc>:: + ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/8/bits/vector.tcc: In member function 'void ATC_matrix::SparseMatrix::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]': +/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + _M_realloc_insert(end(), std::forward<_Args>(__args)...); + ^~~~~~~~~~~~~~~~~ +[ 17%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/SchrodingerSolver.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG 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-I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/SchrodingerSolver.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/SchrodingerSolver.cpp" +In file included from /usr/include/c++/8/vector:69, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:5, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantity.h:7, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp:2: +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': +/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 + vector<_Tp, _Alloc>:: + ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': +/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + _M_realloc_insert(end(), std::forward<_Args>(__args)...); + ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.h:5, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.cpp:1: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantity.h:7, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, @@ -9103,9 +9286,11 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.h:5, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.cpp:1: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantity.h:7, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, @@ -9114,9 +9299,11 @@ from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.h:5, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.cpp:1: + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantity.h:7, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, + from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, @@ -9140,132 +9327,14 @@ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm.h:21, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm.cpp:26: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -In file included from /usr/include/c++/8/vector:69, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:17, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.h:5, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.cpp:1: -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': -/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 - vector<_Tp, _Alloc>:: - ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/vector.tcc: In member function 'void ATC_matrix::SparseMatrix::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]': -/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - _M_realloc_insert(end(), std::forward<_Args>(__args)...); - ^~~~~~~~~~~~~~~~~ -[ 16%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm_ext.cpp" -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm.h:21, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm_ext.cpp:22: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -[ 16%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Quadrature.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Quadrature.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Quadrature.cpp" -[ 16%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/SchrodingerSolver.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" 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-DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/SpeciesTimeIntegrator.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/SpeciesTimeIntegrator.cpp" -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta.cpp:24: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta_ext.cpp:20: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -[ 16%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa.cpp" -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa.cpp:24: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -[ 16%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid.cpp" -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid.cpp:24: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -[ 16%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid_ext.cpp" -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid_ext.cpp:20: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -[ 16%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" 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Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -[ 16%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ThermalTimeIntegrator.cpp.o +[ 17%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ThermalTimeIntegrator.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Thermostat.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Thermostat.cpp" In file included from /usr/include/c++/8/vector:69, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:17, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, @@ -9276,8 +9345,6 @@ /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ -[ 17%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_zbl.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_zbl.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_zbl.cpp" /usr/include/c++/8/bits/vector.tcc: In member function 'void ATC_matrix::SparseMatrix::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]': /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); @@ -9326,17 +9393,6 @@ /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_zbl.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_zbl.cpp:24: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ /usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, @@ -9351,34 +9407,10 @@ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 17%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_zbl_ext.cpp.o -/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_zbl_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_zbl_ext.cpp" -In file included from /usr/include/CL/cl.h:32, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_zbl.h:19, - from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_zbl_ext.cpp:20: -/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) - #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") - ^ -[ 17%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Thermostat.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferLibrary.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferLibrary.cpp" In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, @@ -9443,16 +9475,14 @@ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +[ 17%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferLibrary.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferLibrary.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferLibrary.cpp" [ 17%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferOperator.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationDiffusion.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationDiffusion.cpp" In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, @@ -9465,13 +9495,11 @@ /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 18%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationElectronContinuity.cpp.o /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationElectronContinuity.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationElectronContinuity.cpp" In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, @@ -9516,6 +9544,10 @@ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +[ 18%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationChargeDiffusion.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationChargeDiffusion.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationChargeDiffusion.cpp" +[ 18%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationDiffusion.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationDiffusion.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationDiffusion.cpp" In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, @@ -9583,14 +9615,12 @@ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +[ 18%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationElectronContinuity.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationElectronContinuity.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationElectronContinuity.cpp" [ 18%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationElectronMomentum.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationElectronMomentum.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationElectronMomentum.cpp" [ 18%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationElectronTemperature.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_deprecated.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_deprecated.cpp" +[ 18%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_hybrid.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_hybrid.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_hybrid.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_hybrid.cpp: In member function 'virtual void LAMMPS_NS::AngleHybrid::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_hybrid.cpp:338:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nstyles,sizeof(int),1,fp); @@ -9716,12 +9744,18 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_hybrid.cpp:350:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(keywords[m],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 18%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_zero.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_zero.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_zero.cpp" [ 18%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/atom_vec.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/atom_vec.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_zero.cpp: In member function 'virtual void LAMMPS_NS::AngleZero::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_zero.cpp:133:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&theta0[1],sizeof(double),atom->nangletypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 18%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/atom_vec_atomic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/atom_vec_atomic.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/atom_vec_atomic.cpp" [ 19%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/atom_vec_body.cpp.o @@ -9752,8 +9786,6 @@ /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/citeme.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/citeme.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/bond_hybrid.cpp: In member function 'virtual void LAMMPS_NS::BondHybrid::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/bond_hybrid.cpp:339:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nstyles,sizeof(int),1,fp); @@ -9764,12 +9796,14 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/bond_hybrid.cpp:351:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(keywords[m],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 19%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/citeme.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/citeme.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/citeme.cpp" +[ 20%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/comm.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/comm.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/comm.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/bond_zero.cpp: In member function 'virtual void LAMMPS_NS::BondZero::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/bond_zero.cpp:131:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 20%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/comm.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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[ 20%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/comm_brick.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/dump.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/dump.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/dihedral_hybrid.cpp: In member function 'virtual void LAMMPS_NS::DihedralHybrid::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/dihedral_hybrid.cpp:323:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nstyles,sizeof(int),1,fp); @@ -9942,6 +9972,10 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/dihedral_hybrid.cpp:335:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(keywords[m],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 25%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/domain.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/domain.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/domain.cpp" +[ 25%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/dump.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/dump_atom.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/dump_atom.cpp" [ 25%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/dump_cfg.cpp.o @@ -9982,36 +10016,36 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_chunk.cpp:1057:33: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] if (fileend > 0) ftruncate(fileno(fp),fileend); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ -[ 26%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_histo_weight.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_histo_weight.cpp" -[ 26%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_time.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_time.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_time.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_correlate.cpp: In member function 'virtual void LAMMPS_NS::FixAveCorrelate::end_of_step()': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_correlate.cpp:537:33: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] if (fileend > 0) ftruncate(fileno(fp),fileend); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_histo_weight.cpp: In member function 'virtual void LAMMPS_NS::FixAveHistoWeight::end_of_step()': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_histo_weight.cpp:499:33: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] - if (fileend > 0) ftruncate(fileno(fp),fileend); - ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ +[ 26%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_histo_weight.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_histo_weight.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_histo_weight.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_histo.cpp: In member function 'virtual void LAMMPS_NS::FixAveHisto::end_of_step()': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_histo.cpp:828:33: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] if (fileend > 0) ftruncate(fileno(fp),fileend); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_time.cpp: In member function 'void LAMMPS_NS::FixAveTime::invoke_scalar(LAMMPS_NS::bigint)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_time.cpp:700:33: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] - if (fileend > 0) ftruncate(fileno(fp),fileend); - ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_time.cpp: In member function 'void LAMMPS_NS::FixAveTime::invoke_vector(LAMMPS_NS::bigint)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_time.cpp:911:33: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_histo_weight.cpp: In member function 'virtual void LAMMPS_NS::FixAveHistoWeight::end_of_step()': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_histo_weight.cpp:499:33: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] if (fileend > 0) ftruncate(fileno(fp),fileend); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ +[ 26%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_time.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_aveforce.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_aveforce.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_aveforce.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_balance.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_balance.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_balance.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_box_relax.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" 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-I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_box_relax.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_box_relax.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_time.cpp: In member function 'void LAMMPS_NS::FixAveTime::invoke_scalar(LAMMPS_NS::bigint)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_time.cpp:700:33: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] + if (fileend > 0) ftruncate(fileno(fp),fileend); + ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_time.cpp: In member function 'void LAMMPS_NS::FixAveTime::invoke_vector(LAMMPS_NS::bigint)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_time.cpp:911:33: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] + if (fileend > 0) ftruncate(fileno(fp),fileend); + ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 27%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_controller.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_controller.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_controller.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_deform.cpp.o @@ -10142,8 +10176,6 @@ /usr/bin/c++ 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/image.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/image.cpp" [ 31%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance_group.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance_group.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/group.cpp: In member function 'void LAMMPS_NS::Group::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/group.cpp:730:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&ngroup,sizeof(int),1,fp); @@ -10154,6 +10186,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/group.cpp:746:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(names[i],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 31%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance_group.cpp.o +/usr/bin/c++ -DFFT_FFTW 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance_neigh.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance_neigh.cpp" [ 31%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance_store.cpp.o @@ -10230,10 +10264,6 @@ /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/neigh_list.cpp" -[ 34%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/neigh_request.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/neigh_request.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/neigh_request.cpp" -[ 34%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/neighbor.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/neighbor.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/neighbor.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/modify.cpp: In member function 'int LAMMPS_NS::Modify::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/modify.cpp:1368:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nfix_restart_global,sizeof(int),1,fp); @@ -10274,6 +10304,10 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/modify.cpp:1439:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ +[ 34%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/neigh_request.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/neigh_request.cpp" +[ 34%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/neighbor.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair.cpp" [ 34%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_copy.cpp.o @@ -10451,8 +10485,6 @@ ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 39%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF 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-I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp: In member function 'virtual void LAMMPS_NS::PairBorn::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:334:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -10488,8 +10520,12 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:377:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 39%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp.o 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-I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulDSF::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:366:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -10528,8 +10564,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:411:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 39%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulWolf::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:365:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -10568,8 +10602,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:410:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 39%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck.cpp: In member function 'virtual void LAMMPS_NS::PairBuck::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck.cpp:312:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -10599,8 +10631,14 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck.cpp:351:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 39%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp" [ 39%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_cut.cpp.o /usr/bin/c++ -DFFT_FFTW 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_debye.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_debye.cpp" +[ 39%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_dsf.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_dsf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_dsf.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairBuckCoulCut::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp:366:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -10636,8 +10674,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp:409:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 39%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_debye.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_debye.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_debye.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairCoulCut::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_cut.cpp:249:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -10655,10 +10691,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_cut.cpp:278:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 39%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_dsf.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_dsf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_dsf.cpp" -[ 39%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_streitz.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_streitz.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_streitz.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_debye.cpp: In member function 'virtual void LAMMPS_NS::PairCoulDebye::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_debye.cpp:153:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); @@ -10672,6 +10704,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_debye.cpp:156:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 39%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_streitz.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_streitz.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_streitz.cpp" [ 39%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_wolf.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_wolf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_wolf.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairCoulDSF::read_restart(FILE*)': @@ -10693,6 +10727,8 @@ ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 39%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_deprecated.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairCoulWolf::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_wolf.cpp:254:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -10710,8 +10746,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_wolf.cpp:281:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 39%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG 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-I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd.cpp" [ 40%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd_tstat.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd_tstat.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd_tstat.cpp" [ 40%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_gauss.cpp.o @@ -10742,6 +10776,10 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd.cpp:356:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 40%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid.cpp" +[ 40%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid_overlay.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid_overlay.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid_overlay.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd_tstat.cpp: In member function 'virtual void LAMMPS_NS::PairDPDTstat::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd_tstat.cpp:234:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -10768,8 +10806,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd_tstat.cpp:271:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 40%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_gauss.cpp: In member function 'virtual void LAMMPS_NS::PairGauss::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_gauss.cpp:285:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -10793,8 +10829,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_gauss.cpp:320:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 40%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid_overlay.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid_overlay.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid_overlay.cpp" [ 40%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulCut::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_cut.cpp:357:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -10933,8 +10969,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_cut.cpp:398:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 40%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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"CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_debye.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulDebye::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_debye.cpp:174:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); @@ -10985,8 +11019,6 @@ ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 40%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulWolf::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp:375:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -11019,6 +11051,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp:417:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 40%] Building CXX object 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp" [ 40%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp: In member function 'virtual void LAMMPS_NS::PairLJExpand::read_restart(FILE*)': @@ -11050,6 +11084,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp:367:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp: In member function 'virtual void LAMMPS_NS::PairLJGromacs::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp:345:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -11079,10 +11115,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp:385:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp: In member function 'virtual void LAMMPS_NS::PairLJGromacsCoulGromacs::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp:383:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -11112,30 +11144,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp:422:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 41%] Building CXX object 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_mie_cut.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_mie_cut.cpp" -[ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp" -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp: In member function 'virtual void LAMMPS_NS::PairLJSmoothLinear::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp:287:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp:291:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&epsilon[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp:292:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&sigma[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp:293:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp: In member function 'virtual void LAMMPS_NS::PairLJSmoothLinear::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp:320:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_global,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp:321:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&mix_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp: In member function 'virtual void LAMMPS_NS::PairLJSmooth::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp:356:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -11165,10 +11175,32 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp:396:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_mie_cut.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_mie_cut.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_mie_cut.cpp" +[ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp: In member function 'virtual void LAMMPS_NS::PairLJSmoothLinear::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp:287:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp:291:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&epsilon[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp:292:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&sigma[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp:293:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp: In member function 'virtual void LAMMPS_NS::PairLJSmoothLinear::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp:320:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_global,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp:321:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&mix_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_soft.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_soft.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_soft.cpp" -[ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_mie_cut.cpp: In member function 'virtual void LAMMPS_NS::PairMIECut::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_mie_cut.cpp:633:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -11201,6 +11233,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_mie_cut.cpp:675:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp: In member function 'virtual void LAMMPS_NS::PairMorse::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp:269:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -11288,8 +11322,6 @@ ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zbl.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zbl.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zbl.cpp" -[ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zero.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zero.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zero.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_ufm.cpp: In member function 'virtual void LAMMPS_NS::PairUFM::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_ufm.cpp:290:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -11336,8 +11368,14 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_yukawa.cpp:291:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zero.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zero.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zero.cpp" [ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/procmap.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/random_mars.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/random_mars.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zero.cpp: In member function 'virtual void LAMMPS_NS::PairZero::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zero.cpp:176:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -11352,10 +11390,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zero.cpp:206:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&coeffflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/python.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/python.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/python.cpp" -[ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/random_mars.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/random_park.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/random_park.cpp" [ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/rcb.cpp.o @@ -11366,6 +11400,8 @@ /usr/bin/c++ -DFFT_FFTW 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_dump.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_dump.cpp" [ 42%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp" +[ 42%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/reader.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" 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-I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/reader.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/reader.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp: In member function 'void LAMMPS_NS::ReadRestart::command(int, char**)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp:304:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&flag,sizeof(int),1,fp); @@ -11413,12 +11449,10 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp:1296:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(vec,sizeof(double),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 42%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/reader.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/reader.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/reader.cpp" -[ 42%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/reader_xyz.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/variable.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/variable.cpp" [ 43%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/velocity.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/velocity.cpp" -[ 44%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/verlet.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/verlet.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/verlet.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/variable.cpp: In member function 'int LAMMPS_NS::Variable::next(int, char**)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/variable.cpp:681:13: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fp,"%d",&nextindex); ~~~~~~^~~~~~~~~~~~~~~~~~~~ +[ 44%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/verlet.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/verlet.cpp" [ 44%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_coeff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_data.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_data.cpp" [ 44%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_dump.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_dump.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_dump.cpp" -[ 44%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_restart.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_restart.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_restart.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_coeff.cpp: In member function 'void LAMMPS_NS::WriteCoeff::command(int, char**)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_coeff.cpp:115:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(str,256,one); // coeff @@ -11501,9 +11533,11 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_coeff.cpp:168:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(str,256,one); ~~~~~^~~~~~~~~~~~~ +[ 44%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_restart.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_restart.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_restart.cpp" [ 44%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/compute_erotate_asphere.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/compute_temp_asphere.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/compute_temp_asphere.cpp" [ 44%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/fix_nh_asphere.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/fix_nh_asphere.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/fix_nh_asphere.cpp" @@ -11567,8 +11601,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_gayberne.cpp:517:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 45%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/body_nparticle.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/body_nparticle.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/body_nparticle.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_resquared.cpp: In member function 'virtual void LAMMPS_NS::PairRESquared::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_resquared.cpp:445:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setwell[i],sizeof(int),1,fp); @@ -11595,6 +11627,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_resquared.cpp:487:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 45%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/body_nparticle.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/body_nparticle.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/body_nparticle.cpp" [ 45%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/body_rounded_polygon.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/bond_class2.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/bond_class2.cpp" -[ 46%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/angle_class2.cpp: In member function 'virtual void LAMMPS_NS::AngleClass2::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/angle_class2.cpp:376:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); @@ -11663,8 +11695,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/angle_class2.cpp:388:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ba_r2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 46%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" 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-o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp" +[ 46%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/bond_class2.cpp: In member function 'virtual void LAMMPS_NS::BondClass2::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/bond_class2.cpp:187:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); @@ -11678,6 +11710,10 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/bond_class2.cpp:190:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k4[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 46%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp.o +/usr/bin/c++ -DFFT_FFTW 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp" +[ 46%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp: In member function 'virtual void LAMMPS_NS::DihedralClass2::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:840:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k1[1],sizeof(double),atom->ndihedraltypes,fp); @@ -11775,10 +11811,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:878:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&bb13t_r30[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 46%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp: In member function 'virtual void LAMMPS_NS::ImproperClass2::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp:609:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k0[1],sizeof(double),atom->nimpropertypes,fp); @@ -11804,8 +11836,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp:617:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&aa_theta0_3[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 46%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp:310:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -11832,6 +11862,12 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp:348:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 46%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp" +[ 46%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp" +[ 46%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/fix_wall_colloid.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/fix_wall_colloid.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/fix_wall_colloid.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulCut::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:364:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -11864,8 +11900,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:405:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 46%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/fix_wall_colloid.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/fix_wall_colloid.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/fix_wall_colloid.cpp" +[ 46%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulLong::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:406:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -11901,16 +11937,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:449:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 46%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp" [ 47%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian_poly.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp: In member function 'virtual void LAMMPS_NS::PairBrownian::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp:610:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -11955,6 +11983,12 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp:660:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&flagVF,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 47%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_colloid.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_colloid.cpp: In member function 'virtual void LAMMPS_NS::PairColloid::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_colloid.cpp:401:31: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (comm->me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -11984,8 +12018,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_colloid.cpp:441:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 47%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU_poly.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" 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-I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU_poly.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU_poly.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate.cpp: In member function 'virtual void LAMMPS_NS::PairLubricate::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate.cpp:690:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -12024,6 +12056,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate.cpp:736:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&flagVF,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 47%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU_poly.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU_poly.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU_poly.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp: In member function 'virtual void LAMMPS_NS::PairLubricateU::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp:1917:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -12079,8 +12113,6 @@ /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp" [ 47%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp" -[ 48%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/fix_freeze.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/fix_freeze.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/fix_freeze.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutDipoleCut::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:441:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -12165,6 +12197,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp:390:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ewald_order,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 48%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/fix_freeze.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/fix_freeze.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/fix_freeze.cpp" [ 48%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/fix_pour.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/ewald.cpp" [ 48%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/ewald_disp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fft3d_wrap.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fft3d_wrap.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp: In member function 'virtual void LAMMPS_NS::PairGranHookeHistory::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp:542:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -12208,12 +12238,18 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp:573:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dampflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 48%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fft3d.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fft3d.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fft3d.cpp" +[ 48%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fft3d_wrap.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/gridcomm.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/gridcomm.cpp" [ 48%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/msm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/msm_cg.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/msm_cg.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp: In member function 'virtual void LAMMPS_NS::FixTuneKspace::init()': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp:103:23: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(old_acc_str,"%g",old_acc); @@ -12301,8 +12337,6 @@ ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 49%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/msm_cg.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/msm_cg.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/msm_cg.cpp" [ 49%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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"CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_long.cpp" [ 49%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_msm.cpp.o @@ -12353,6 +12387,10 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_long.cpp:476:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 49%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_msm.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_msm.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_msm.cpp" +[ 49%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairBuckCoulLong::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:404:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -12391,10 +12429,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:449:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 49%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_msm.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp" [ 49%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_msm.cpp.o @@ -12504,8 +12538,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:875:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 49%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmfswCoulLong::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:900:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -12544,8 +12576,12 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:945:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 49%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLong::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:800:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -12581,14 +12617,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:843:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 49%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp.o 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp" [ 49%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_tip4p_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_tip4p_long.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTIP4PLong::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:537:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&typeO,sizeof(int),1,fp); @@ -12626,6 +12656,10 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:549:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 50%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp.o +/usr/bin/c++ 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp" +[ 50%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_tip4p_long.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_tip4p_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_tip4p_long.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJLongCoulLong::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:360:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -12661,6 +12695,24 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:403:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ewald_order,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 50%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_tip4p_long.cpp: In member function 'virtual void LAMMPS_NS::PairTIP4PLong::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_tip4p_long.cpp:476:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&typeO,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_tip4p_long.cpp:477:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&typeH,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_tip4p_long.cpp:478:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&typeB,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_tip4p_long.cpp:479:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&typeA,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_tip4p_long.cpp:480:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&qdist,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJLongTIP4PLong::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1549:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&typeO,sizeof(int),1,fp); @@ -12695,26 +12747,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1560:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 50%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm.cpp" [ 50%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_cg.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_cg.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_cg.cpp" -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_tip4p_long.cpp: In member function 'virtual void LAMMPS_NS::PairTIP4PLong::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_tip4p_long.cpp:476:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&typeO,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_tip4p_long.cpp:477:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&typeH,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_tip4p_long.cpp:478:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&typeB,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_tip4p_long.cpp:479:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&typeA,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_tip4p_long.cpp:480:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&qdist,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_disp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_disp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_disp.cpp" [ 50%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_disp_tip4p.cpp.o @@ -12726,13 +12760,15 @@ [ 50%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/remap.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/remap.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/remap.cpp" [ 50%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/remap_wrap.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/remap_wrap.cpp" [ 50%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/fix_qeq_comb.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/fix_qeq_comb.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/fix_qeq_comb.cpp" [ 50%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_adp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp" +[ 50%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo_morse.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo_morse.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo_morse.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_adp.cpp: In member function 'void LAMMPS_NS::PairADP::read_file(char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_adp.cpp:564:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); @@ -12756,8 +12792,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_adp.cpp:928:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ -[ 50%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo_morse.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo_morse.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo_morse.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp: In member function 'void LAMMPS_NS::PairAIREBO::read_file(char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3385:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); @@ -13160,10 +13194,6 @@ ~~~~~^~~~~~~~~~~~~~ [ 51%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_atm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_atm.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_atm.cpp" -[ 51%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp" -[ 51%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_atm.cpp: In member function 'virtual void LAMMPS_NS::PairATM::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_atm.cpp:313:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -13178,8 +13208,10 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_atm.cpp:342:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_triple,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 51%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp: In member function 'void LAMMPS_NS::PairBOP::read_table(char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:4982:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); // skip first comment line @@ -13289,6 +13321,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5232:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ +[ 51%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp: In member function 'void LAMMPS_NS::PairComb3::read_lib()': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:326:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); @@ -13346,6 +13380,10 @@ ~~~~~^~~~~~~~~~~~~ [ 51%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_cd.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_cd.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam.cpp: In member function 'virtual void LAMMPS_NS::PairEAM::read_file(char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam.cpp:470:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); @@ -13360,8 +13398,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam.cpp:788:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ -[ 51%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_alloy.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_alloy.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_alloy.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_alloy.cpp: In member function 'virtual void LAMMPS_NS::PairEAMAlloy::read_file(char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_alloy.cpp:140:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); @@ -13381,14 +13417,17 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_alloy.cpp:192:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ -[ 51%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_cd.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_cd.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_cd.cpp" [ 51%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_fs.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_gw.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_gw.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_fs.cpp: In member function 'virtual void LAMMPS_NS::PairEAMFS::read_file(char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_fs.cpp:140:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ +[ 51%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_gw_zbl.cpp.o /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_fs.cpp:141:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ @@ -13404,10 +13443,7 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_fs.cpp:194:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ -[ 51%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eim.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eim.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eim.cpp" -[ 51%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_gw.cpp.o -/usr/bin/c++ -DFFT_FFTW 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_gw_zbl.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_gw_zbl.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eim.cpp: In member function 'int LAMMPS_NS::PairEIM::grabpair(FILE*, int, int)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eim.cpp:971:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); @@ -13415,8 +13451,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eim.cpp:975:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ -[ 51%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_gw_zbl.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_tersoff.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_tersoff.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_polymorphic.cpp: In member function 'virtual void LAMMPS_NS::PairPolymorphic::read_file(char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_polymorphic.cpp:580:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); @@ -13552,6 +13582,10 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_polymorphic.cpp:882:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ +[ 52%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_sw.cpp.o +/usr/bin/c++ 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/compute_msd_nongauss.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/compute_msd_nongauss.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC/pair_dsmc.cpp: In member function 'virtual void LAMMPS_NS::PairDSMC::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC/pair_dsmc.cpp:350:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -13602,10 +13640,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC/pair_dsmc.cpp:387:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 53%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM/pair_meam.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM/pair_meam.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM/pair_meam.cpp" -[ 53%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/compute_msd_nongauss.cpp.o -/usr/bin/c++ -DFFT_FFTW 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/compute_ti.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/compute_ti.cpp" [ 53%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/dump_xtc.cpp.o @@ -13634,10 +13668,6 @@ /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/xdr_compat.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/xdr_compat.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut.cpp: In member function 'virtual void LAMMPS_NS::PairNMCut::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut.cpp:323:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -13670,8 +13700,52 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut.cpp:364:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 54%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairNMCutCoulCut::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:374:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:378:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&e0[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:379:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&r0[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:380:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&nn[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:381:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&mm[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:382:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_lj[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:383:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_coul[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairNMCutCoulCut::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:415:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_lj_global,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:416:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_coul_global,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:417:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&offset_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:418:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&mix_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:419:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&tail_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 54%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/xdr_compat.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_charmm.cpp" +[ 54%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairNMCutCoulLong::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:421:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -13713,46 +13787,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:468:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairNMCutCoulCut::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:374:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:378:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&e0[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:379:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&r0[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:380:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&nn[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:381:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&mm[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:382:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_lj[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:383:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_coul[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairNMCutCoulCut::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:415:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_lj_global,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:416:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_coul_global,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:417:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&offset_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:418:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&mix_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:419:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&tail_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 54%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine.cpp" [ 54%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_delta.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_delta.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_delta.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_charmm.cpp: In member function 'virtual void LAMMPS_NS::AngleCharmm::read_restart(FILE*)': @@ -13768,20 +13802,18 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_charmm.cpp:252:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&r_ub[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 54%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_periodic.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_periodic.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_periodic.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine.cpp: In member function 'virtual void LAMMPS_NS::AngleCosine::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine.cpp:197:27: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (comm->me == 0) fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 54%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_periodic.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_angle.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_angle.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_periodic.cpp: In member function 'virtual void LAMMPS_NS::AngleCosinePeriodic::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_periodic.cpp:250:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); @@ -13806,13 +13838,19 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_harmonic.cpp:220:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 54%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_angle.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_bond.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_bond.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_table.cpp: In member function 'virtual void LAMMPS_NS::AngleTable::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_table.cpp:292:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabstyle,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 54%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_full.cpp.o /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_table.cpp:293:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tablength,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_full.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_full.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_table.cpp: In member function 'void LAMMPS_NS::AngleTable::read_table(LAMMPS_NS::AngleTable::Table*, char*, char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_table.cpp:385:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section @@ -13832,20 +13870,12 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_table.cpp:405:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ -[ 54%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_bond.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene_expand.cpp" -[ 55%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_gromos.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_gromos.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_gromos.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene.cpp: In member function 'virtual void LAMMPS_NS::BondFENE::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene.cpp:220:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); @@ -13859,6 +13889,10 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene.cpp:223:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 55%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene_expand.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_harmonic.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_harmonic.cpp" [ 55%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_morse.cpp.o @@ -13879,9 +13913,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene_expand.cpp:233:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&shift[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 55%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_nonlinear.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_nonlinear.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_nonlinear.cpp" -[ 55%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_quartic.cpp.o /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_gromos.cpp: In member function 'virtual void LAMMPS_NS::BondGromos::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_gromos.cpp:172:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); @@ -13889,9 +13920,10 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_gromos.cpp:173:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 55%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_nonlinear.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_harmonic.cpp: In member function 'virtual void LAMMPS_NS::BondHarmonic::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_harmonic.cpp:172:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); @@ -13899,6 +13931,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_harmonic.cpp:173:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 55%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_morse.cpp: In member function 'virtual void LAMMPS_NS::BondMorse::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_morse.cpp:176:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&d0[1],sizeof(double),atom->nbondtypes,fp); @@ -13921,8 +13955,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_nonlinear.cpp:173:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&lamda[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 55%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_quartic.cpp: In member function 'virtual void LAMMPS_NS::BondQuartic::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_quartic.cpp:281:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); @@ -13939,8 +13971,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_quartic.cpp:285:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&u0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 55%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_harmonic.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_harmonic.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_harmonic.cpp" +[ 55%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp: In member function 'virtual void LAMMPS_NS::BondTable::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp:236:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabstyle,sizeof(int),1,fp); @@ -13964,8 +13996,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp:335:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ -[ 55%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_helix.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" 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+/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_harmonic.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_harmonic.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmm.cpp: In member function 'virtual void LAMMPS_NS::DihedralCharmm::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmm.cpp:429:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->ndihedraltypes,fp); @@ -13982,8 +14014,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmm.cpp:433:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&weightflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 55%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp" +[ 55%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_helix.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_helix.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_helix.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp: In member function 'virtual void LAMMPS_NS::DihedralCharmmfsw::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp:472:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->ndihedraltypes,fp); @@ -14000,16 +14032,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp:476:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&weightflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_helix.cpp: In member function 'virtual void LAMMPS_NS::DihedralHelix::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_helix.cpp:325:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&aphi[1],sizeof(double),atom->ndihedraltypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_helix.cpp:326:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&bphi[1],sizeof(double),atom->ndihedraltypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_helix.cpp:327:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cphi[1],sizeof(double),atom->ndihedraltypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 55%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_harmonic.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_harmonic.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_helix.cpp: In member function 'virtual void LAMMPS_NS::DihedralHelix::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_helix.cpp:325:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&aphi[1],sizeof(double),atom->ndihedraltypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_helix.cpp:326:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&bphi[1],sizeof(double),atom->ndihedraltypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_helix.cpp:327:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cphi[1],sizeof(double),atom->ndihedraltypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp: In member function 'virtual void LAMMPS_NS::DihedralMultiHarmonic::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp:320:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a1[1],sizeof(double),atom->ndihedraltypes,fp); @@ -14044,8 +14074,10 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp:324:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a5[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 56%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_umbrella.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_umbrella.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_umbrella.cpp" +[ 56%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_cvff.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_cvff.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_cvff.cpp" +[ 56%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_harmonic.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_harmonic.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_harmonic.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_opls.cpp: In member function 'virtual void LAMMPS_NS::DihedralOPLS::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_opls.cpp:335:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k1[1],sizeof(double),atom->ndihedraltypes,fp); @@ -14059,6 +14091,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_opls.cpp:338:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k4[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 56%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_umbrella.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_umbrella.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_umbrella.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_cvff.cpp: In member function 'virtual void LAMMPS_NS::ImproperCvff::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_cvff.cpp:339:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nimpropertypes,fp); @@ -14076,12 +14110,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_harmonic.cpp:281:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&chi[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 56%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_hbond_dreiding_lj.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_hbond_dreiding_morse.cpp" -[ 56%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_umbrella.cpp: In member function 'virtual void LAMMPS_NS::ImproperUmbrella::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_umbrella.cpp:321:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&kw[1],sizeof(double),atom->nimpropertypes,fp); @@ -14092,6 +14120,12 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_umbrella.cpp:323:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&C[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 56%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_hbond_dreiding_lj.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/atom_vec_peri.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/atom_vec_peri.cpp" -[ 56%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/compute_damage_atom.cpp.o -/usr/bin/c++ 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/compute_damage_atom.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/compute_damage_atom.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmfswCoulCharmmfsh::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:437:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:441:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&epsilon[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:442:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&sigma[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:443:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&eps14[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:444:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&sigma14[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmfswCoulCharmmfsh::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:474:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_lj_inner,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:475:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_lj,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:476:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_coul,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:477:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&offset_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:478:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&mix_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTIP4PCut::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:621:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -14183,38 +14247,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:673:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmfswCoulCharmmfsh::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:437:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:441:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&epsilon[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:442:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&sigma[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:443:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&eps14[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:444:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&sigma14[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmfswCoulCharmmfsh::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:474:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_lj_inner,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:475:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_lj,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:476:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_coul,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:477:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&offset_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:478:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&mix_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp: In member function 'virtual void LAMMPS_NS::PairTIP4PCut::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:480:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -14238,6 +14270,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:513:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 56%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/compute_damage_atom.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/compute_damage_atom.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/compute_damage_atom.cpp" [ 56%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/compute_dilatation_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/compute_dilatation_atom.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/compute_dilatation_atom.cpp" [ 56%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/compute_plasticity_atom.cpp.o @@ -14250,8 +14284,6 @@ /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_ves.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_ves.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_eps.cpp: In member function 'virtual void LAMMPS_NS::PairPeriEPS::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_eps.cpp:570:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -14274,22 +14306,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_eps.cpp:579:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&m_yieldstress[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_pmb.cpp: In member function 'virtual void LAMMPS_NS::PairPeriPMB::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_pmb.cpp:424:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_pmb.cpp:428:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&kspring[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_pmb.cpp:429:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&s00[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_pmb.cpp:430:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&alpha[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_pmb.cpp:431:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_lps.cpp: In member function 'virtual void LAMMPS_NS::PairPeriLPS::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_lps.cpp:495:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -14309,6 +14325,30 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_lps.cpp:503:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_pmb.cpp: In member function 'virtual void LAMMPS_NS::PairPeriPMB::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_pmb.cpp:424:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_pmb.cpp:428:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&kspring[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_pmb.cpp:429:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&s00[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_pmb.cpp:430:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&alpha[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_pmb.cpp:431:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 57%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_ves.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_ves.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_ves.cpp" +[ 57%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/compute_event_displace.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_event.cpp" +[ 57%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_event_hyper.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_event_hyper.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_event_hyper.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_ves.cpp: In member function 'virtual void LAMMPS_NS::PairPeriVES::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_ves.cpp:552:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -14334,12 +14374,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_ves.cpp:562:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&m_taubi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 57%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/compute_event_displace.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/compute_event_displace.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/compute_event_displace.cpp" -[ 57%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_event.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp" [ 61%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS/compute_pressure_bocs.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS/fix_bocs.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS/fix_bocs.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp: In member function 'virtual void LAMMPS_NS::PairAWPMDCut::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp:604:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -14483,8 +14519,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp:633:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 61%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS/fix_bocs.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS/fix_bocs.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS/fix_bocs.cpp" [ 61%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/bond_oxdna2_fene.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_excv.cpp" -[ 62%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_stk.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_stk.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_stk.cpp" -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp: In member function 'virtual void LAMMPS_NS::PairOxdna2Dh::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:458:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:463:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&kappa_dh[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:464:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&qeff_dh_pf[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:465:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&b_dh[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:466:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_dh_ast[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:467:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_dh_c[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp: In member function 'virtual void LAMMPS_NS::PairOxdna2Dh::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:500:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&offset_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:501:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&mix_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:502:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&tail_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdna2Coaxstk::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:833:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -14668,14 +14671,43 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:939:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp: In member function 'virtual void LAMMPS_NS::PairOxdna2Dh::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:458:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:463:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&kappa_dh[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:464:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&qeff_dh_pf[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:465:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&b_dh[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:466:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_dh_ast[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:467:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_dh_c[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp: In member function 'virtual void LAMMPS_NS::PairOxdna2Dh::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:500:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&offset_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:501:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&mix_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:502:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&tail_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 62%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_stk.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaCoaxstk::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:992:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -14860,6 +14892,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:782:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 62%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaHbond::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:979:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -15115,8 +15149,6 @@ ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 62%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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"CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/atom_vec_edpd.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/atom_vec_edpd.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaXstk::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:951:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -15248,6 +15280,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:1075:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 62%] Building CXX object 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/fix_edpd_source.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/fix_edpd_source.cpp" [ 62%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/fix_mvv_dpd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/fix_tdpd_source.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/fix_tdpd_source.cpp" [ 63%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_edpd.cpp.o @@ -15272,10 +15306,6 @@ /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp" [ 63%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd_rhosum.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/angle_sdk.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/angle_sdk.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_edpd.cpp: In member function 'virtual void LAMMPS_NS::PairEDPD::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_edpd.cpp:458:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -15317,6 +15347,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_edpd.cpp:515:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 63%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp: In member function 'virtual void LAMMPS_NS::PairMDPD::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp:353:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -15349,6 +15381,12 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp:394:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 63%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/angle_sdk.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/angle_sdk.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/angle_sdk.cpp" +[ 63%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp" +[ 63%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp: In member function 'virtual void LAMMPS_NS::PairTDPD::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp:401:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -15390,8 +15428,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp:452:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 63%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" 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-I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/angle_sdk.cpp: In member function 'virtual void LAMMPS_NS::AngleSDK::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/angle_sdk.cpp:336:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); @@ -15402,14 +15438,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/angle_sdk.cpp:338:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&repscale[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 63%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp" [ 63%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_msm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/compute_xrd.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/compute_xrd.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp: In member function 'virtual void LAMMPS_NS::PairLJSDK::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:385:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -15477,16 +15507,16 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:521:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 63%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/compute_saed.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/compute_saed.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/compute_saed.cpp" +[ 63%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/compute_xrd.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/compute_dpd_atom.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/compute_dpd_atom.cpp" -[ 64%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_dpd_energy.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP 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-I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_dpd_energy.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_dpd_energy.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp: In member function 'void LAMMPS_NS::FixSAEDVTK::invoke_vector(LAMMPS_NS::bigint)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp:434:26: warning: '%s' directive output may be truncated writing up to 127 bytes into a region of size 98 [-Wformat-truncation=] snprintf(str,128,"Cannot open fix saed/vtk file %s",nName); @@ -15500,6 +15530,8 @@ ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 64%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/compute_dpd_atom.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/compute_dpd_atom.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/compute_dpd_atom.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp: In member function 'void LAMMPS_NS::FixSAEDVTK::options(int, char**)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp:561:28: warning: '%s' directive output may be truncated writing up to 127 bytes into a region of size 98 [-Wformat-truncation=] snprintf(str,128,"Cannot open fix saed/vtk file %s",nName); @@ -15513,6 +15545,8 @@ ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 64%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_dpd_energy.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_dpd_energy.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_dpd_energy.cpp" [ 64%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_cv.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/nbin_ssa.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/nbin_ssa.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table.cpp: In member function 'void LAMMPS_NS::FixEOStable::read_table(LAMMPS_NS::FixEOStable::Table*, LAMMPS_NS::FixEOStable::Table*, char*, char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table.cpp:216:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section @@ -15563,6 +15595,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp:474:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ +[ 64%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/nbin_ssa.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/nbin_ssa.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/nbin_ssa.cpp" [ 64%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/npair_half_bin_newton_ssa.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_exp6_rx.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_exp6_rx.cpp" +[ 65%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp: In member function 'virtual void LAMMPS_NS::PairDPDfdt::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp:382:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -15599,10 +15637,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp:420:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 64%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_exp6_rx.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_exp6_rx.cpp" -[ 65%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp: In member function 'virtual void LAMMPS_NS::PairDPDfdtEnergy::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp:483:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -15629,10 +15663,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp:522:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 65%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp" -[ 65%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_table_rx.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_table_rx.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_table_rx.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_exp6_rx.cpp: In member function 'virtual void LAMMPS_NS::PairExp6rx::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_exp6_rx.cpp:974:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -15653,6 +15683,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_exp6_rx.cpp:1007:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 65%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp: In member function 'void LAMMPS_NS::PairMultiLucy::read_table(LAMMPS_NS::PairMultiLucy::Table*, char*, char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:366:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section @@ -15679,8 +15711,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:710:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tablength,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 65%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/compute_temp_drude.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/compute_temp_drude.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/compute_temp_drude.cpp" +[ 65%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_table_rx.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_table_rx.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_table_rx.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp: In member function 'void LAMMPS_NS::PairMultiLucyRX::read_table(LAMMPS_NS::PairMultiLucyRX::Table*, char*, char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:511:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section @@ -15707,6 +15739,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:855:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tablength,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 65%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/compute_temp_drude.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/compute_temp_drude.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/compute_temp_drude.cpp" [ 65%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/fix_drude.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/fix_langevin_drude.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/fix_langevin_drude.cpp" [ 65%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp" -[ 65%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTholeLong::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:495:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -15764,6 +15796,14 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:548:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 65%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/compute_ke_eff.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/compute_ke_eff.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp: In member function 'virtual void LAMMPS_NS::PairThole::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp:316:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -15790,12 +15830,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp:355:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 65%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/atom_vec_electron.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/atom_vec_electron.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/atom_vec_electron.cpp" -[ 65%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/compute_ke_atom_eff.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/pair_eff_cut.cpp: In member function 'virtual void LAMMPS_NS::PairEffCut::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/pair_eff_cut.cpp:970:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -15871,6 +15903,12 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp:316:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 66%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp" +[ 67%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairCoulLongSoft::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp:301:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -15894,58 +15932,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp:337:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 66%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp.o 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp" -[ 67%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp" -[ 67%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp" -[ 67%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp" -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulCutSoft::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:381:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:385:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&epsilon[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:386:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&sigma[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:387:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&lambda[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:388:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_lj[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:389:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_coul[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulCutSoft::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:424:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&nlambda,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:425:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&alphalj,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:426:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&alphac,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:428:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_lj_global,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:429:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_coul_global,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:430:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&offset_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:431:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&mix_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:432:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&tail_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulLongSoft::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:843:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -15990,41 +15976,54 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:894:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutSoft::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:657:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulCutSoft::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:381:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:661:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:385:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:662:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:386:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:663:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:387:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&lambda[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:664:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutSoft::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:697:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:388:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_lj[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:389:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_coul[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulCutSoft::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:424:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&nlambda,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:698:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:425:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&alphalj,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:700:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_global,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:701:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:426:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&alphac,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:428:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_lj_global,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:429:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_coul_global,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:430:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:702:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:431:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:703:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:432:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 67%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp" +[ 67%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLongSoft::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:799:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -16068,10 +16067,43 @@ ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 67%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutSoft::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:657:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:661:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&epsilon[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:662:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&sigma[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:663:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&lambda[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:664:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutSoft::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:697:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&nlambda,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:698:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&alphalj,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:700:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_global,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:701:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&offset_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:702:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&mix_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:703:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&tail_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 67%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_morse_soft.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_morse_soft.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_morse_soft.cpp" -[ 67%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTIP4PLongSoft::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:525:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&typeO,sizeof(int),1,fp); @@ -16103,10 +16135,10 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:535:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 67%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp" [ 67%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD/dump_h5md.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD/dump_h5md.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD/dump_h5md.cpp" -[ 67%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB/fix_lb_fluid.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB/fix_lb_fluid.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB/fix_lb_fluid.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_morse_soft.cpp: In member function 'virtual void LAMMPS_NS::PairMorseSoft::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_morse_soft.cpp:317:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -16126,6 +16158,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_morse_soft.cpp:325:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 67%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB/fix_lb_fluid.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB/fix_lb_fluid.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB/fix_lb_fluid.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairTIP4PLongSoft::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp:462:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&typeO,sizeof(int),1,fp); @@ -16180,14 +16214,14 @@ /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC/meam_dens_init.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC/meam_dens_init.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD/manifold_thylakoid.cpp: In member function 'virtual void LAMMPS_NS::user_manifold::manifold_thylakoid::checkup()': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD/manifold_thylakoid.cpp:62:20: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] fprintf(screen,"I have %ld parts. They are:\n", parts.size()); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~ +[ 68%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC/meam_dens_final.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp" [ 69%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_splinetab.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp: In member function 'void potdata::readpot(const char*, const char*, double)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:187:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); @@ -16253,10 +16283,12 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:123:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ +[ 69%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/pair_mgpt.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_dipole.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_dipole.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift.cpp: In member function 'virtual void LAMMPS_NS::AngleCosineShift::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift.cpp:228:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); @@ -16270,6 +16302,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift.cpp:231:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 69%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_dipole.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_dipole.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_dipole.cpp" [ 70%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp: In member function 'virtual void LAMMPS_NS::AngleCosineShiftExp::read_restart(FILE*)': @@ -16288,6 +16322,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp:264:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 70%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier_simple.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier_simple.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier_simple.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_dipole.cpp: In member function 'virtual void LAMMPS_NS::AngleDipole::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_dipole.cpp:209:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); @@ -16295,12 +16331,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_dipole.cpp:210:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&gamma0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 70%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier_simple.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier_simple.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier_simple.cpp" -[ 70%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_quartic.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_quartic.cpp" -[ 70%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier.cpp: In member function 'virtual void LAMMPS_NS::AngleFourier::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier.cpp:235:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); @@ -16314,6 +16344,20 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier.cpp:238:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&C2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 70%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_quartic.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_quartic.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_quartic.cpp" +[ 70%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier_simple.cpp: In member function 'virtual void LAMMPS_NS::AngleFourierSimple::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier_simple.cpp:241:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&k[1],sizeof(double),atom->nangletypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier_simple.cpp:242:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&C[1],sizeof(double),atom->nangletypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier_simple.cpp:243:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&N[1],sizeof(double),atom->nangletypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 70%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift_cut.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift_cut.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift_cut.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_quartic.cpp: In member function 'virtual void LAMMPS_NS::AngleQuartic::read_restart(FILE*)': @@ -16329,16 +16373,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_quartic.cpp:239:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier_simple.cpp: In member function 'virtual void LAMMPS_NS::AngleFourierSimple::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier_simple.cpp:241:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&k[1],sizeof(double),atom->nangletypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier_simple.cpp:242:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&C[1],sizeof(double),atom->nangletypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier_simple.cpp:243:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&N[1],sizeof(double),atom->nangletypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp: In member function 'virtual void LAMMPS_NS::BondHarmonicShift::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp:181:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); @@ -16353,8 +16387,6 @@ /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_ackland_atom.cpp" [ 70%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_basal_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_cnp_atom.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_cnp_atom.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift_cut.cpp: In member function 'virtual void LAMMPS_NS::BondHarmonicShiftCut::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift_cut.cpp:183:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); @@ -16365,6 +16397,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift_cut.cpp:185:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&r1[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 70%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_cnp_atom.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_cnp_atom.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_cnp_atom.cpp" [ 70%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_entropy_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_fourier.cpp: In member function 'virtual void LAMMPS_NS::DihedralFourier::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_fourier.cpp:371:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&nterms[1],sizeof(int),atom->ndihedraltypes,fp); @@ -16423,6 +16455,10 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_nharmonic.cpp:332:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(a[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 71%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp.o 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp" +[ 71%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_quadratic.cpp: In member function 'virtual void LAMMPS_NS::DihedralQuadratic::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_quadratic.cpp:327:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->ndihedraltypes,fp); @@ -16430,10 +16466,10 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_quadratic.cpp:328:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&phi0[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 71%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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"CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table.cpp" [ 71%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp" +[ 71%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_addtorque.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_addtorque.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_addtorque.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp: In member function 'virtual void LAMMPS_NS::DihedralSpherical::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp:759:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&nterms[1],sizeof(int),atom->ndihedraltypes,fp); @@ -16468,10 +16504,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp:788:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(theta2_offset[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 71%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_addtorque.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_addtorque.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_addtorque.cpp" -[ 71%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ave_correlate_long.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ave_correlate_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ave_correlate_long.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table.cpp: In member function 'virtual void LAMMPS_NS::DihedralTable::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table.cpp:1026:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabstyle,sizeof(int),1,fp); @@ -16539,6 +16571,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1164:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ +[ 71%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ave_correlate_long.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ave_correlate_long.cpp" [ 71%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_bond_react.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_wall_ees.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_wall_ees.cpp" -[ 72%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_wall_region_ees.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_wall_region_ees.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_wall_region_ees.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp: In constructor 'LAMMPS_NS::FixTTMMod::FixTTMMod(LAMMPS_NS::LAMMPS*, int, char**)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:123:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); @@ -16710,12 +16742,12 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:229:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ +[ 72%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_wall_region_ees.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_distance.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_distance.cpp" -[ 72%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_fourier.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_fourier.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_fourier.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_cossq.cpp: In member function 'virtual void LAMMPS_NS::ImproperCossq::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_cossq.cpp:307:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nimpropertypes,fp); @@ -16723,6 +16755,10 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_cossq.cpp:308:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&chi[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 72%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_fourier.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_fourier.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_fourier.cpp" +[ 72%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_ring.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_ring.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_ring.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_distance.cpp: In member function 'virtual void LAMMPS_NS::ImproperDistance::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_distance.cpp:253:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nimpropertypes,fp); @@ -16730,10 +16766,10 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_distance.cpp:254:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&chi[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 72%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_ring.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_ring.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_ring.cpp" [ 73%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_agni.cpp.o /usr/bin/c++ 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_agni.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_agni.cpp" +[ 73%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_buck_mdf.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_buck_mdf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_buck_mdf.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_fourier.cpp: In member function 'virtual void LAMMPS_NS::ImproperFourier::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_fourier.cpp:332:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nimpropertypes,fp); @@ -16750,10 +16786,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_fourier.cpp:336:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&all[1],sizeof(int),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 73%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_buck_mdf.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_ring.cpp: In member function 'virtual void LAMMPS_NS::ImproperRing::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_ring.cpp:332:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nimpropertypes,fp); @@ -16761,6 +16793,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_ring.cpp:333:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&chi[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 73%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp.o 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_shield.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_shield.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_buck_mdf.cpp: In member function 'virtual void LAMMPS_NS::PairBuckMDF::read_restart(FILE*)': @@ -16814,8 +16848,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp:319:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 73%] Building CXX object 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_edip_multi.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_edip_multi.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_shield.cpp: In member function 'virtual void LAMMPS_NS::PairCoulShield::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_shield.cpp:305:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigmae[i][j],sizeof(double),1,fp); @@ -16833,12 +16865,12 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_shield.cpp:334:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 73%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_edip_multi.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_edip_multi.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_edip_multi.cpp" [ 73%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_extep.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" 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/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_gauss_cut.cpp: In member function 'virtual void LAMMPS_NS::PairGaussCut::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_gauss_cut.cpp:309:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -16865,12 +16897,16 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_gauss_cut.cpp:347:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 73%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_ilp_graphene_hbn.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_ilp_graphene_hbn.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_ilp_graphene_hbn.cpp" [ 73%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_kolmogorov_crespi_full.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_list.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_list.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp: In member function 'virtual void LAMMPS_NS::PairLJ_AB_MDF::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp:314:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -16891,8 +16927,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp:348:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 73%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_list.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_list.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_list.cpp" [ 73%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp" [ 73%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp.o @@ -16939,6 +16973,26 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:880:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp: In member function 'virtual void LAMMPS_NS::PairLJMDF::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:314:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:318:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&epsilon[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:319:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&sigma[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:320:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_inner[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:321:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp: In member function 'virtual void LAMMPS_NS::PairLJMDF::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:348:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&mix_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp: In member function 'virtual void LAMMPS_NS::PairLJSFDipoleSF::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:490:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -16968,28 +17022,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:529:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp: In member function 'virtual void LAMMPS_NS::PairLJMDF::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:314:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:318:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&epsilon[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:319:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&sigma[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:320:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_inner[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:321:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp: In member function 'virtual void LAMMPS_NS::PairLJMDF::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:348:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&mix_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 74%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_spline.cpp: In member function 'void LAMMPS_NS::PairMEAMSpline::read_file(const char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_spline.cpp:449:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); @@ -17016,8 +17048,14 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_spline.cpp:669:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ +[ 74%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp" [ 74%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_momb.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_srp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_srp.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp: In member function 'void LAMMPS_NS::PairMEAMSWSpline::read_file(const char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp:475:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); @@ -17035,10 +17073,29 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp:623:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ -[ 74%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_srp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_srp.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp: In member function 'virtual void LAMMPS_NS::PairMorseSmoothLinear::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:278:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:282:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&d0[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:283:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&alpha[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:284:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&r0[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:285:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut[i][j],sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp: In member function 'virtual void LAMMPS_NS::PairMorseSmoothLinear::read_restart_settings(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:312:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&cut_global,sizeof(double),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:313:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&mix_flag,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_momb.cpp: In member function 'virtual void LAMMPS_NS::PairMomb::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_momb.cpp:312:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -17106,29 +17163,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_srp.cpp:742:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&exclude,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp: In member function 'virtual void LAMMPS_NS::PairMorseSmoothLinear::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:278:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:282:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&d0[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:283:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&alpha[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:284:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&r0[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:285:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut[i][j],sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp: In member function 'virtual void LAMMPS_NS::PairMorseSmoothLinear::read_restart_settings(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:312:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&cut_global,sizeof(double),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:313:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&mix_flag,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 74%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_tersoff_table.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_tersoff_table.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_tersoff_table.cpp" [ 74%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/temper_grem.cpp.o @@ -17141,18 +17175,6 @@ /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp" [ 74%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/improper_inversion_harmonic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/improper_inversion_harmonic.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/improper_inversion_harmonic.cpp" -[ 74%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp" -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp: In member function 'virtual void LAMMPS_NS::AngleCosineBuck6d::read_restart(FILE*)': -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp:337:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&k[1],sizeof(double),atom->nangletypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp:338:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&multiplicity[1],sizeof(int),atom->nangletypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp:339:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&th0[1],sizeof(double),atom->nangletypes,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp: In member function 'virtual void LAMMPS_NS::AngleClass2P6::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:389:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); @@ -17193,8 +17215,18 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:403:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ba_r2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 74%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp" +[ 74%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp" +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp: In member function 'virtual void LAMMPS_NS::AngleCosineBuck6d::read_restart(FILE*)': +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp:337:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&k[1],sizeof(double),atom->nangletypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp:338:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&multiplicity[1],sizeof(int),atom->nangletypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp:339:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&th0[1],sizeof(double),atom->nangletypes,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/improper_inversion_harmonic.cpp: In member function 'virtual void LAMMPS_NS::ImproperInversionHarmonic::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/improper_inversion_harmonic.cpp:320:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&kw[1],sizeof(double),atom->nimpropertypes,fp); @@ -17202,8 +17234,12 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/improper_inversion_harmonic.cpp:321:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&w0[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 74%] Building CXX object 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE/molfile_interface.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE/molfile_interface.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairBuck6dCoulGaussDSF::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:420:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -17245,10 +17281,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:467:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 75%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE/molfile_interface.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE/molfile_interface.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE/molfile_interface.cpp" -[ 75%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE/reader_molfile.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE/reader_molfile.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE/reader_molfile.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp: In member function 'virtual void LAMMPS_NS::PairBuck6dCoulGaussLong::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:453:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -17293,6 +17325,8 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:502:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 75%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE/reader_molfile.cpp.o +/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE/reader_molfile.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE/reader_molfile.cpp" [ 75%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF/dump_netcdf.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF/dump_netcdf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF/dump_netcdf.cpp" [ 75%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF/dump_netcdf_mpiio.cpp.o @@ -17730,9 +17764,9 @@ /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/npair_half_bin_newtoff_omp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/npair_half_bin_newtoff_omp.cpp" [ 86%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/npair_half_bin_newtoff_ghost_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_cd_omp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_cd_omp.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp: In member function 'virtual void LAMMPS_NS::PairEAMAlloyOMP::read_file(char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp:139:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); @@ -17921,8 +17957,6 @@ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp:187:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ -[ 92%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_cd_omp.cpp.o -/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_cd_omp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_cd_omp.cpp" [ 92%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp: In member function 'virtual void LAMMPS_NS::PairEAMFSOMP::read_file(char*)': @@ -18219,7 +18253,7 @@ Created orthogonal box = (0 0 -0.278569) to (111.428 77.1994 0.278569) 1 by 1 by 1 MPI processor grid Created 8141 atoms - Time spent = 0.00624489 secs + Time spent = 0.0234574 secs 302 atoms in group lower 302 atoms in group upper 604 atoms in group boundary @@ -18279,20 +18313,20 @@ 4600 0.086766447 -3.0437627 0 -2.9634443 -1.0208785 9361.9925 4800 0.088195149 -3.0328502 0 -2.9512093 -1.0272063 9395.6122 5000 0.089415266 -3.0228825 0 -2.9401122 -1.0215336 9436.1637 -Loop time of 53.3056 on 1 procs for 5000 steps with 8141 atoms +Loop time of 161.424 on 1 procs for 5000 steps with 8141 atoms -Performance: 24312.628 tau/day, 93.799 timesteps/s -98.0% CPU use with 1 MPI tasks x 1 OpenMP threads +Performance: 8028.535 tau/day, 30.974 timesteps/s +66.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- -Pair | 40.174 | 40.174 | 40.174 | 0.0 | 75.36 -Neigh | 1.4552 | 1.4552 | 1.4552 | 0.0 | 2.73 -Comm | 0.053455 | 0.053455 | 0.053455 | 0.0 | 0.10 -Output | 0.0089107 | 0.0089107 | 0.0089107 | 0.0 | 0.02 -Modify | 9.4947 | 9.4947 | 9.4947 | 0.0 | 17.81 -Other | | 2.12 | | | 3.98 +Pair | 111.44 | 111.44 | 111.44 | 0.0 | 69.03 +Neigh | 3.3684 | 3.3684 | 3.3684 | 0.0 | 2.09 +Comm | 0.3815 | 0.3815 | 0.3815 | 0.0 | 0.24 +Output | 0.0544 | 0.0544 | 0.0544 | 0.0 | 0.03 +Modify | 32.078 | 32.078 | 32.078 | 0.0 | 19.87 +Other | | 14.11 | | | 8.74 Nlocal: 8141 ave 8141 max 8141 min Histogram: 1 0 0 0 0 0 0 0 0 0 @@ -18305,7 +18339,7 @@ Ave neighs/atom = 8.76907 Neighbor list builds = 100 Dangerous builds = 0 -Total wall time: 0:00:53 +Total wall time: 0:02:41 rm -rf test make[1]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1' dh_auto_test -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build -Nlammps @@ -18315,7 +18349,7 @@ dh_testroot -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_prep -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_auto_install -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build - cd debian/build && make -j5 install DESTDIR=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd debian/build && make -j4 install DESTDIR=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' /usr/bin/cmake -S"/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" -B"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/progress.marks" @@ -18324,65 +18358,65 @@ make -f CMakeFiles/h5md.dir/build.make CMakeFiles/h5md.dir/depend make -f CMakeFiles/gpu.dir/build.make CMakeFiles/gpu.dir/depend make -f CMakeFiles/meam.dir/build.make CMakeFiles/meam.dir/depend -make -f CMakeFiles/awpmd.dir/build.make CMakeFiles/awpmd.dir/depend -make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/depend make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/h5md.dir/DependInfo.cmake" --color= -make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' -cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/awpmd.dir/DependInfo.cmake" --color= +make -f CMakeFiles/awpmd.dir/build.make CMakeFiles/awpmd.dir/depend make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/meam.dir/DependInfo.cmake" --color= +make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' +cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/awpmd.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' +make -f CMakeFiles/awpmd.dir/build.make CMakeFiles/awpmd.dir/build make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make -f CMakeFiles/meam.dir/build.make CMakeFiles/meam.dir/build -make -f CMakeFiles/awpmd.dir/build.make CMakeFiles/awpmd.dir/build -make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' -make[3]: Nothing to be done for 'CMakeFiles/meam.dir/build'. make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' +make -f CMakeFiles/h5md.dir/build.make CMakeFiles/h5md.dir/build +make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' +cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/gpu.dir/DependInfo.cmake" --color= make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make[3]: Nothing to be done for 'CMakeFiles/awpmd.dir/build'. make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' +make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' +make[3]: Nothing to be done for 'CMakeFiles/meam.dir/build'. make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' -make -f CMakeFiles/h5md.dir/build.make CMakeFiles/h5md.dir/build make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make[3]: Nothing to be done for 'CMakeFiles/h5md.dir/build'. make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' [ 1%] Built target meam -make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/depend [ 2%] Built target awpmd +make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/depend +make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/depend +[ 2%] Built target h5md make -f CMakeFiles/ocl_get_devices.dir/build.make CMakeFiles/ocl_get_devices.dir/depend make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' -cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/poems.dir/DependInfo.cmake" --color= -make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/ocl_get_devices.dir/DependInfo.cmake" --color= -[ 2%] Built target h5md make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' -cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/atc.dir/DependInfo.cmake" --color= +cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/poems.dir/DependInfo.cmake" --color= make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' -cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/gpu.dir/DependInfo.cmake" --color= +cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/atc.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make -f CMakeFiles/ocl_get_devices.dir/build.make CMakeFiles/ocl_get_devices.dir/build +make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/build -make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make[3]: Nothing to be done for 'CMakeFiles/ocl_get_devices.dir/build'. make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' +[ 2%] Built target ocl_get_devices make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make[3]: Nothing to be done for 'CMakeFiles/poems.dir/build'. make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' -make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/build -[ 2%] Built target ocl_get_devices +make -f CMakeFiles/gpu.dir/build.make CMakeFiles/gpu.dir/build [ 5%] Built target poems make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' -make -f CMakeFiles/gpu.dir/build.make CMakeFiles/gpu.dir/build +make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/build make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make[3]: Nothing to be done for 'CMakeFiles/atc.dir/build'. make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' -[ 10%] Built target atc make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make[3]: Nothing to be done for 'CMakeFiles/gpu.dir/build'. make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' +[ 10%] Built target atc [ 18%] Built target gpu make -f CMakeFiles/lmp.dir/build.make CMakeFiles/lmp.dir/depend make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' @@ -18406,150 +18440,150 @@ -- Set runtime path of "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/bin/lmp" to "" -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/man/man1/lmp.1 -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Si_2.meam.spline +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Mo_Chen_PRM2017.snapparam +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ta4.mgpt.parmin +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/V6.1.mgpt.parmin +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ta06A.snapparam +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CC.KC-full +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Al_prb.agni -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/SiC.edip +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/SiC_1990.tersoff +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ni.meam +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CdZnTe_v1.bop.table +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Cu_mishin1.eam.alloy +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/SiO.1997.vashishta +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.smtbq.TiO2 -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/README.reax --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/BNCH.ILP --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/NiAlH_jea.eam.fs --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Cu_u3.eam --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/SiO.1990.vashishta --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Si.tersoff.mod +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/SiC.tersoff +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Si.sw +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.reax.cho +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.eim +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CuH.bop.table +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/AlFe_mm.eam.fs +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.reax.ZnOH +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/W_zhou.eam.alloy +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.smtbq.Al2O3 +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Cu_u6.eam +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ni_smf7.eam +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ta06A.snap -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/SiC_Erhart-Albe.tersoff --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/lib.comb3 --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Cu_smf7.eam --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ta06A.snapcoeff --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/SiC_1994.tersoff --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.reax.lg --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/SiO.tersoff --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/MOH.nb3b.harmonic --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.comb3 +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Si.edip +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/AlO.eam.alloy -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Si_1.meam.spline --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.comb --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/AlCu.bop.table --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/BN.extep --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CH.airebo-m --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ni.meam --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Mo5.2.mgpt.README --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/TiO.meam.spline --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ta6.8x.mgpt.README +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/BNC.tersoff +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/W_2940_2017_2.snapcoeff +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CH.KC -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/InP.vashishta -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/W_2940_2017_2_He_JW2013.snap --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/AlSiMgCuFe.meam --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CuTa_eam.poly --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CH.airebo --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CH.KC --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CdZnTe_v1.bop.table --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/FeP_mm.eam.fs +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CuNi.eam.alloy +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CC.KC +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CH_taper.KC +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CuTa.eam.alloy -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ti.meam.sw.spline --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/AlFe_mm.eam.fs --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Pt_u3.eam --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.reax.mattsson --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Mo_Chen_PRM2017.snap +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/README +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/SiC.vashishta +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Au_u3.eam +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/FeCr.cdeam +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/TiO.meam.spline +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.reax.lg +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.comb3 +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Al_jpc.agni +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Mg_mm.eam.fs +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/BNCH.ILP -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/W_2940_2017_2.snapparam --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ta06A.snap --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.reax.AuO --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Si.sw --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Al_mm.eam.fs --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ta6.8x.mgpt.potin --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/W_2940_2017_2.snapcoeff --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Cu.meam --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/SiC.tersoff --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.eim --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ta4.mgpt.README --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/AlO.eam.alloy --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/GaAs.bop.table --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.reax.rdx --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ta4.mgpt.parmin --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ni_smf7.eam --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Mo5.2.mgpt.parmin -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ta6.8x.mgpt.parmin --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/library.meam +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/SiCGe.tersoff +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.reax.Fe_O_C_H +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/WL.meam +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Pd_u3.eam +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/V6.1.mgpt.potin +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Pt_u3.eam +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ci-reaxFF_ZBL.dat +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CdTe.bop.table +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/AlSiMgCuFe.meam +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CdTeSe.bop.table +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/AlCu.adp +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/AlCu.bop.table +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/BN.extep -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ge.tersoff +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/SiO.tersoff +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Si.tersoff.modc +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/library.meam +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Si.b.meam.sw.spline +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Cu_smf7.eam +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CCu_v2.bop.table +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.smtbq.Al +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/W_He_JW2013.table +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CdTeZnSeHgS0.sw +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Cu.meam +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/GaN.tersoff +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Cu_zhou.eam.alloy +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CH.airebo +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/lib.comb3 -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Si.tersoff --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/charmm36.cmap --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Cu_mishin1.eam.alloy --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/V6.1.mgpt.README --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/C.lcbop --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CdTe.bop.table +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.reax.mattsson +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CuTa_eam.poly +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.ci-reax.CH +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/VFe_mm.eam.fs +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Cu_u3.eam +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/SiO.1990.vashishta +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CdZnTe_v2.bop.table +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ni.adp +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Fe_mm.eam.fs +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CuZr_mm.eam.fs +-- Installing: 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Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.reax.V_O_C_H +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ni_u3.eam +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ti.meam.spline +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/W_2940_2017_2.snap +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CoAl.eam.alloy -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/SiC_1989.tersoff +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.reax.AuO +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/MOH.nb3b.harmonic -- Installing: 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Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/charmm22.cmap --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.ci-reax.CH --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CdTeSe.bop.table --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/V6.1.mgpt.parmin --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CdTe.sw --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Si.tersoff.modc --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.reax.AB -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/SiC.tersoff.zbl --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/He_He_JW2013.table --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ni_u3.eam --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CuNi.eam.alloy --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CuZr_mm.eam.fs --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Al_jpc.agni --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.smtbq.Al --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/AlO.streitz --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ag_u3.eam +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/V6.1.mgpt.README +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/SiO.1994.vashishta +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Si.tersoff.mod +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/FeP_mm.eam.fs +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/SiC_1994.tersoff +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/NiAlH_jea.eam.alloy -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ta4.mgpt.potin --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/FeCr.cdeam --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CCu_v2.bop.table --- Installing: 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Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/AlO.streitz +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.comb +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Mo5.2.mgpt.parmin -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Al_zhou.eam.alloy --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Zr_mm.eam.fs --- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ni.adp +-- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/GaN_sw.poly -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.reax.budzien --- Installing: 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+/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/eim/in.eim +/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/eim/data.eim.gz find /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/ -type f -print0 | xargs -0 sed -i 's/https:\/\/cdn\.mathjax\.org\/mathjax\/latest/\/usr\/share\/javascript\/mathjax/g' rm -rf /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps-doc/doc/doc2 make[1]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1' @@ -19918,171 +19952,173 @@ dh_makeshlibs -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_shlibdeps -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dpkg-shlibdeps: warning: debian/lammps/usr/bin/lmp contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersPython-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingMorphological-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersReebGraph-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOPLY-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingContextOpenGL-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersParallelMPI-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libXt.so.6 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libX11.so.6 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libfreetype.so.6 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkTestingIOSQL-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkInfovisBoostGraphAlgorithms-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOParallel-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingCore-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersGeometry-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersProgrammable-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkTestingGenericBridge-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libexpat.so.1 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkInteractionStyle-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkViewsContext2D-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersTexture-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkftgl-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersGeneric-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingColor-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkWrappingJava-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkGeovisCore-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingVolumeOpenGL-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOFFMPEG-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersStatistics-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libhdf5_serial.so.103 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersGeneral-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkInteractionWidgets-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOMovie-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingCore-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkCommonTransforms-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOParallelExodus-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libXext.so.6 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOImage-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkParallelMPI-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkCommonMath-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersVerdict-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersParallelFlowPaths-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingGeneral-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkParallelMPI4Py-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkxdmf2-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingLOD-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersHybrid-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersAMR-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOGeoJSON-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOPostgreSQL-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkChartsCore-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libjsoncpp.so.1 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOEnSight-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingParallel-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOMySQL-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingAnnotation-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkWrappingJava-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libogg.so.0 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtksys-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOXMLParser-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersSMP-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libGL.so.1 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOExodus-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libgl2ps.so.1.4 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkDICOMParser-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingMatplotlib-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkCommonColor-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOInfovis-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libsqlite3.so.0 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIONetCDF-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libGLU.so.1 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOGeoJSON-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkParallelCore-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOParallelLSDyna-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingSources-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOVPIC-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkalglib-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingFourier-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOGeometry-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOSQL-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingFreeTypeFontConfig-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkVPIC-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkverdict-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkViewsInfovis-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersModeling-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkViewsGeovis-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkexoIIc-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOXdmf2-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersAMR-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingParallelLIC-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkTestingRendering-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libsz.so.2 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOMPIImage-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingFourier-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOExport-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersHybrid-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingFreeType-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libtheoradec.so.1 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersSelection-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersParallelImaging-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingLIC-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOGDAL-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOVideo-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOLSDyna-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkxdmf2-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtksys-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingMath-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libfreetype.so.6 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersExtraction-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersHyperTree-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOPostgreSQL-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingHybrid-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libproj.so.13 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkCommonMisc-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOGeometry-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersParallelImaging-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkViewsContext2D-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingMorphological-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkParallelCore-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingCore-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkWrappingPython27Core-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkChartsCore-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOMINC-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOAMR-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingLabel-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkftgl-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersSelection-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libXext.so.6 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkCommonMisc-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingGL2PS-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOExodus-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingFreeTypeFontConfig-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingParallelLIC-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingLOD-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkTestingGenericBridge-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingVolume-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libSM.so.6 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkInfovisCore-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libxml2.so.2 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersCore-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkInteractionStyle-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libexpat.so.1 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkCommonTransforms-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersProgrammable-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkLocalExample-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOParallelNetCDF-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOMPIImage-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingStencil-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkCommonSystem-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersParallelGeometry-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersPython-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOParallelLSDyna-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkViewsCore-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkTestingIOSQL-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkInfovisBoostGraphAlgorithms-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersGeneric-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersReebGraph-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersFlowPaths-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libnetcdf_c++.so.4 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersHyperTree-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkPythonInterpreter-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersParallelFlowPaths-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOSQL-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkInfovisLayout-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingMatplotlib-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libICE.so.6 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkInteractionImage-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libX11.so.6 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libgl2ps.so.1.4 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOMovie-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libxml2.so.2 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkParallelMPI-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersParallel-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingFreeType-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersGeneral-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkInfovisCore-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkCommonMath-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOImport-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOLSDyna-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libGLU.so.1 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libtiff.so.5 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingImage-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingGL2PS-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libjsoncpp.so.1 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersSources-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOVPIC-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingExternal-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libmpi_cxx.so.40 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingContext2D-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersParallel-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersCore-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkPythonInterpreter-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingVolumeAMR-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkInfovisLayout-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libnetcdf_c++.so.4 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkmetaio-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingOpenGL-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkCommonColor-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersImaging-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libGL.so.1 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingGeneral-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libproj.so.13 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOMINC-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOFFMPEG-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersSMP-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkCommonSystem-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOParallelNetCDF-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingLIC-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkalglib-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkmetaio-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOPLY-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingStatistics-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkDomainsChemistry-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingMath-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkViewsGeovis-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkVPIC-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkInteractionWidgets-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkGeovisCore-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersTexture-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersSources-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkParallelMPI4Py-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libsz.so.2 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libhdf5_serial.so.103 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersParallelStatistics-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libICE.so.6 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkCommonComputationalGeometry-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersFlowPaths-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libtheoraenc.so.1 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOParallel-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libtiff.so.5 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOVideo-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingVolume-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersVerdict-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingHybrid-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingVolumeOpenGL-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingOpenGL-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libsqlite3.so.0 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOGDAL-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOParallelExodus-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libtheoradec.so.1 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersModeling-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersParallelGeometry-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libXt.so.6 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingAnnotation-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libmpi_cxx.so.40 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingSources-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkTestingRendering-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkCommonExecutionModel-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkInteractionImage-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingStencil-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libtheoraenc.so.1 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOXMLParser-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkexoIIc-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkDICOMParser-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOMySQL-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOImage-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOAMR-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersParallelMPI-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersStatistics-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkCommonComputationalGeometry-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkDomainsChemistry-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingLabel-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingContextOpenGL-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingVolumeAMR-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOInfovis-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingContext2D-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingColor-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkViewsInfovis-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkverdict-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIONetCDF-6.3.so.6.3 (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersGeometry-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOODBC-6.3.so.6.3 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOEnSight-6.3.so.6.3 (it uses none of the library's symbols) dh_installdeb -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_gencontrol -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_md5sums -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_builddeb -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build -dpkg-deb: building package 'lammps-doc' in '../lammps-doc_0~20181211.gitad1b1897d+dfsg1-2_all.deb'. -dpkg-deb: building package 'lammps-dbgsym' in '../lammps-dbgsym_0~20181211.gitad1b1897d+dfsg1-2_armhf.deb'. dpkg-deb: building package 'lammps' in '../lammps_0~20181211.gitad1b1897d+dfsg1-2_armhf.deb'. +dpkg-deb: building package 'lammps-dbgsym' in '../lammps-dbgsym_0~20181211.gitad1b1897d+dfsg1-2_armhf.deb'. dpkg-deb: building package 'lammps-data' in '../lammps-data_0~20181211.gitad1b1897d+dfsg1-2_all.deb'. +dpkg-deb: building package 'lammps-doc' in '../lammps-doc_0~20181211.gitad1b1897d+dfsg1-2_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../lammps_0~20181211.gitad1b1897d+dfsg1-2_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/14943/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/14943/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3993 and its subdirectories -I: Current time: Thu Jul 2 12:33:21 -12 2020 -I: pbuilder-time-stamp: 1593736401 +I: removing directory /srv/workspace/pbuilder/14943 and its subdirectories +I: Current time: Fri Jul 3 19:41:42 +14 2020 +I: pbuilder-time-stamp: 1593754902