Diff of the two buildlogs: -- --- b1/build.log 2020-06-25 05:57:39.930779459 +0000 +++ b2/build.log 2020-06-25 06:01:22.310270811 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Jun 24 17:38:40 -12 2020 -I: pbuilder-time-stamp: 1593063520 +I: Current time: Thu Jun 25 19:58:02 +14 2020 +I: pbuilder-time-stamp: 1593064682 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Wed Oct 3 01:32:13 2018 -12 +gpgv: Signature made Thu Oct 4 03:32:13 2018 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -39,136 +39,170 @@ dpkg-source: info: applying remove_copy_of_LoadHelper.pm.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/18674/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2144/tmp/hooks/D01_modify_environment starting +debug: Running on ff2b. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2144/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2144/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.0.3(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='b9e13fca3ec04031b0f14bce629078ef' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='18674' - PS1='# ' - PS2='> ' + INVOCATION_ID=51ca74f4e126410793a8230c01513cbc + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2144 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.WjUh08ONSq/pbuilderrc_GWxv --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.WjUh08ONSq/b1 --logfile b1/build.log gbrowse_2.56+dfsg-4.dsc' - SUDO_GID='115' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:8000/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.WjUh08ONSq/pbuilderrc_FF03 --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.WjUh08ONSq/b2 --logfile b2/build.log gbrowse_2.56+dfsg-4.dsc' + SUDO_GID=114 + SUDO_UID=109 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:8000/ I: uname -a - Linux p64c 4.19.0-9-arm64 #1 SMP Debian 4.19.118-2+deb10u1 (2020-06-07) aarch64 GNU/Linux + Linux i-capture-the-hostname 4.19.0-9-armmp-lpae #1 SMP Debian 4.19.118-2+deb10u1 (2020-06-07) armv7l GNU/Linux I: ls -l /bin total 3328 - -rwxr-xr-x 1 root root 767656 Apr 17 2019 bash - -rwxr-xr-x 3 root root 26052 Jul 10 2019 bunzip2 - -rwxr-xr-x 3 root root 26052 Jul 10 2019 bzcat - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep - -rwxr-xr-x 3 root root 26052 Jul 10 2019 bzip2 - -rwxr-xr-x 1 root root 9636 Jul 10 2019 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore - -rwxr-xr-x 1 root root 22432 Feb 28 2019 cat - -rwxr-xr-x 1 root root 38868 Feb 28 2019 chgrp - -rwxr-xr-x 1 root root 38836 Feb 28 2019 chmod - -rwxr-xr-x 1 root root 42972 Feb 28 2019 chown - -rwxr-xr-x 1 root root 88376 Feb 28 2019 cp - -rwxr-xr-x 1 root root 75516 Jan 17 2019 dash - -rwxr-xr-x 1 root root 71648 Feb 28 2019 date - -rwxr-xr-x 1 root root 51212 Feb 28 2019 dd - -rwxr-xr-x 1 root root 55672 Feb 28 2019 df - -rwxr-xr-x 1 root root 88444 Feb 28 2019 dir - -rwxr-xr-x 1 root root 54872 Jan 9 2019 dmesg - lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname - -rwxr-xr-x 1 root root 22364 Feb 28 2019 echo - -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep - -rwxr-xr-x 1 root root 18260 Feb 28 2019 false - -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep - -rwxr-xr-x 1 root root 47356 Jan 9 2019 findmnt - -rwsr-xr-x 1 root root 21980 Apr 22 07:38 fusermount - -rwxr-xr-x 1 root root 124508 Jan 7 2019 grep - -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip - -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe - -rwxr-xr-x 1 root root 64232 Jan 5 2019 gzip - -rwxr-xr-x 1 root root 13784 Sep 26 2018 hostname - -rwxr-xr-x 1 root root 43044 Feb 28 2019 ln - -rwxr-xr-x 1 root root 34932 Jul 26 2018 login - -rwxr-xr-x 1 root root 88444 Feb 28 2019 ls - -rwxr-xr-x 1 root root 67036 Jan 9 2019 lsblk - -rwxr-xr-x 1 root root 47168 Feb 28 2019 mkdir - -rwxr-xr-x 1 root root 43040 Feb 28 2019 mknod - -rwxr-xr-x 1 root root 26552 Feb 28 2019 mktemp - -rwxr-xr-x 1 root root 26024 Jan 9 2019 more - -rwsr-xr-x 1 root root 34268 Jan 9 2019 mount - -rwxr-xr-x 1 root root 9688 Jan 9 2019 mountpoint - -rwxr-xr-x 1 root root 84284 Feb 28 2019 mv - lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 22416 Feb 28 2019 pwd - lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash - -rwxr-xr-x 1 root root 26504 Feb 28 2019 readlink - -rwxr-xr-x 1 root root 42968 Feb 28 2019 rm - -rwxr-xr-x 1 root root 26496 Feb 28 2019 rmdir - -rwxr-xr-x 1 root root 14136 Jan 21 2019 run-parts - -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jun 23 20:30 sh -> dash - -rwxr-xr-x 1 root root 22384 Feb 28 2019 sleep - -rwxr-xr-x 1 root root 51124 Feb 28 2019 stty - -rwsr-xr-x 1 root root 42472 Jan 9 2019 su - -rwxr-xr-x 1 root root 22392 Feb 28 2019 sync - -rwxr-xr-x 1 root root 283324 Apr 23 2019 tar - -rwxr-xr-x 1 root root 9808 Jan 21 2019 tempfile - -rwxr-xr-x 1 root root 63464 Feb 28 2019 touch - -rwxr-xr-x 1 root root 18260 Feb 28 2019 true - -rwxr-xr-x 1 root root 9636 Apr 22 07:38 ulockmgr_server - -rwsr-xr-x 1 root root 21976 Jan 9 2019 umount - -rwxr-xr-x 1 root root 22380 Feb 28 2019 uname - -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress - -rwxr-xr-x 1 root root 88444 Feb 28 2019 vdir - -rwxr-xr-x 1 root root 21980 Jan 9 2019 wdctl - -rwxr-xr-x 1 root root 946 Jan 21 2019 which - lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat - -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp - -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff - -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep - -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep - -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce - -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep - -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless - -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore - -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew -I: user script /srv/workspace/pbuilder/18674/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 767656 Apr 18 2019 bash + -rwxr-xr-x 3 root root 26052 Jul 11 2019 bunzip2 + -rwxr-xr-x 3 root root 26052 Jul 11 2019 bzcat + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep + -rwxr-xr-x 3 root root 26052 Jul 11 2019 bzip2 + -rwxr-xr-x 1 root root 9636 Jul 11 2019 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore + -rwxr-xr-x 1 root root 22432 Mar 1 2019 cat + -rwxr-xr-x 1 root root 38868 Mar 1 2019 chgrp + -rwxr-xr-x 1 root root 38836 Mar 1 2019 chmod + -rwxr-xr-x 1 root root 42972 Mar 1 2019 chown + -rwxr-xr-x 1 root root 88376 Mar 1 2019 cp + -rwxr-xr-x 1 root root 75516 Jan 18 2019 dash + -rwxr-xr-x 1 root root 71648 Mar 1 2019 date + -rwxr-xr-x 1 root root 51212 Mar 1 2019 dd + -rwxr-xr-x 1 root root 55672 Mar 1 2019 df + -rwxr-xr-x 1 root root 88444 Mar 1 2019 dir + -rwxr-xr-x 1 root root 54872 Jan 10 2019 dmesg + lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname + -rwxr-xr-x 1 root root 22364 Mar 1 2019 echo + -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep + -rwxr-xr-x 1 root root 18260 Mar 1 2019 false + -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep + -rwxr-xr-x 1 root root 47356 Jan 10 2019 findmnt + -rwsr-xr-x 1 root root 21980 Apr 23 09:38 fusermount + -rwxr-xr-x 1 root root 124508 Jan 8 2019 grep + -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip + -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe + -rwxr-xr-x 1 root root 64232 Jan 6 2019 gzip + -rwxr-xr-x 1 root root 13784 Sep 27 2018 hostname + -rwxr-xr-x 1 root root 43044 Mar 1 2019 ln + -rwxr-xr-x 1 root root 34932 Jul 27 2018 login + -rwxr-xr-x 1 root root 88444 Mar 1 2019 ls + -rwxr-xr-x 1 root root 67036 Jan 10 2019 lsblk + -rwxr-xr-x 1 root root 47168 Mar 1 2019 mkdir + -rwxr-xr-x 1 root root 43040 Mar 1 2019 mknod + -rwxr-xr-x 1 root root 26552 Mar 1 2019 mktemp + -rwxr-xr-x 1 root root 26024 Jan 10 2019 more + -rwsr-xr-x 1 root root 34268 Jan 10 2019 mount + -rwxr-xr-x 1 root root 9688 Jan 10 2019 mountpoint + -rwxr-xr-x 1 root root 84284 Mar 1 2019 mv + lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 22416 Mar 1 2019 pwd + lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash + -rwxr-xr-x 1 root root 26504 Mar 1 2019 readlink + -rwxr-xr-x 1 root root 42968 Mar 1 2019 rm + -rwxr-xr-x 1 root root 26496 Mar 1 2019 rmdir + -rwxr-xr-x 1 root root 14136 Jan 22 2019 run-parts + -rwxr-xr-x 1 root root 76012 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Jun 25 19:58 sh -> bash + lrwxrwxrwx 1 root root 4 Jun 23 22:26 sh.distrib -> dash + -rwxr-xr-x 1 root root 22384 Mar 1 2019 sleep + -rwxr-xr-x 1 root root 51124 Mar 1 2019 stty + -rwsr-xr-x 1 root root 42472 Jan 10 2019 su + -rwxr-xr-x 1 root root 22392 Mar 1 2019 sync + -rwxr-xr-x 1 root root 283324 Apr 24 2019 tar + -rwxr-xr-x 1 root root 9808 Jan 22 2019 tempfile + -rwxr-xr-x 1 root root 63464 Mar 1 2019 touch + -rwxr-xr-x 1 root root 18260 Mar 1 2019 true + -rwxr-xr-x 1 root root 9636 Apr 23 09:38 ulockmgr_server + -rwsr-xr-x 1 root root 21976 Jan 10 2019 umount + -rwxr-xr-x 1 root root 22380 Mar 1 2019 uname + -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress + -rwxr-xr-x 1 root root 88444 Mar 1 2019 vdir + -rwxr-xr-x 1 root root 21980 Jan 10 2019 wdctl + -rwxr-xr-x 1 root root 946 Jan 22 2019 which + lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat + -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp + -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff + -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep + -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep + -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce + -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep + -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless + -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore + -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew +I: user script /srv/workspace/pbuilder/2144/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -390,7 +424,7 @@ Get: 136 http://deb.debian.org/debian buster/main armhf libvm-ec2-perl all 1.28-2 [768 kB] Get: 137 http://deb.debian.org/debian buster/main armhf rename all 1.10-1 [17.2 kB] Get: 138 http://deb.debian.org/debian buster/main armhf sqlite3 armhf 3.27.2-3 [810 kB] -Fetched 40.3 MB in 11s (3652 kB/s) +Fetched 40.3 MB in 5s (7696 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18932 files and directories currently installed.) @@ -984,7 +1018,7 @@ fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/gbrowse-2.56+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/gbrowse-2.56+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package gbrowse dpkg-buildpackage: info: source version 2.56+dfsg-4 dpkg-buildpackage: info: source distribution unstable @@ -1412,8 +1446,8 @@ Possible precedence issue with control flow operator at /usr/share/perl5/Bio/DB/IndexedBase.pm line 845, line 1. Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 817. Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 820. -Possible precedence issue with control flow operator at /usr/share/perl5/Bio/DB/IndexedBase.pm line 845, line 1. File::Glob::glob() will disappear in perl 5.30. Use File::Glob::bsd_glob() instead. at /usr/share/perl5/Bio/DB/GFF.pm line 2000. +Possible precedence issue with control flow operator at /usr/share/perl5/Bio/DB/IndexedBase.pm line 845, line 1. Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 817. Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 820. File::Glob::glob() will disappear in perl 5.30. Use File::Glob::bsd_glob() instead. at /usr/share/perl5/Bio/DB/GFF.pm line 2000. @@ -1427,7 +1461,7 @@ File::Glob::glob() will disappear in perl 5.30. Use File::Glob::bsd_glob() instead. at /usr/share/perl5/Bio/DB/GFF.pm line 2000. Use of uninitialized value $_[5] in pack at /usr/share/perl5/Bio/DB/IndexedBase.pm line 1044, line 2. Use of uninitialized value $_[5] in pack at /usr/share/perl5/Bio/DB/IndexedBase.pm line 1044, line 2. -cannot remove directory for /tmp/gbrowse_testing/qhoaBhsg8Q: No such file or directory at /usr/share/perl/5.28/File/Temp.pm line 778. +cannot remove directory for /tmp/gbrowse_testing/nLx2RPGSPZ: No such file or directory at t/03.render.t line 40. t/03.render.t ............. 1..150 ok 1 @@ -1601,14 +1635,12 @@ Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 820. Possible precedence issue with control flow operator at /usr/share/perl5/Bio/DB/IndexedBase.pm line 845, line 1. Possible precedence issue with control flow operator at /usr/share/perl5/Bio/DB/IndexedBase.pm line 845, line 1. -cannot remove directory for /tmp/gbrowse_testing: Directory not empty at t/04.remoteserver.t line 170. Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 817. Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 820. -Could not open database: Can't call method "seq" on an undefined value at /usr/share/perl5/Bio/DB/SeqFeature/Store/LoadHelper.pm line 173, line 21. -File::Glob::glob() will disappear in perl 5.30. Use File::Glob::bsd_glob() instead. at /usr/share/perl5/Bio/DB/GFF.pm line 2000. Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 817. Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 820. File::Glob::glob() will disappear in perl 5.30. Use File::Glob::bsd_glob() instead. at /usr/share/perl5/Bio/DB/GFF.pm line 2000. +File::Glob::glob() will disappear in perl 5.30. Use File::Glob::bsd_glob() instead. at /usr/share/perl5/Bio/DB/GFF.pm line 2000. t/04.remoteserver.t ....... 1..43 ok 1 @@ -1659,8 +1691,8 @@ Possible precedence issue with control flow operator at /usr/share/perl5/Bio/DB/IndexedBase.pm line 845, line 1. Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 817. Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 820. -File::Glob::glob() will disappear in perl 5.30. Use File::Glob::bsd_glob() instead. at /usr/share/perl5/Bio/DB/GFF.pm line 2000. Possible precedence issue with control flow operator at /usr/share/perl5/Bio/DB/IndexedBase.pm line 845, line 1. +File::Glob::glob() will disappear in perl 5.30. Use File::Glob::bsd_glob() instead. at /usr/share/perl5/Bio/DB/GFF.pm line 2000. Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 817. Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 820. File::Glob::glob() will disappear in perl 5.30. Use File::Glob::bsd_glob() instead. at /usr/share/perl5/Bio/DB/GFF.pm line 2000. @@ -1769,8 +1801,8 @@ t/08.calign.t ............. 1..6 # Running under perl version 5.028001 for linux -# Current time local: Wed Jun 24 17:52:36 2020 -# Current time GMT: Thu Jun 25 05:52:36 2020 +# Current time local: Thu Jun 25 20:00:49 2020 +# Current time GMT: Thu Jun 25 06:00:49 2020 # Using Test.pm version 1.31 ok 1 ok 2 @@ -1780,7 +1812,7 @@ ok 6 ok All tests successful. -Files=10, Tests=448, 283 wallclock secs ( 0.76 usr 0.18 sys + 168.48 cusr 24.04 csys = 193.46 CPU) +Files=10, Tests=448, 48 wallclock secs ( 0.17 usr 0.04 sys + 34.02 cusr 6.36 csys = 40.59 CPU) Result: PASS make[1]: Leaving directory '/build/gbrowse-2.56+dfsg' create-stamp debian/debhelper-build-stamp @@ -1801,596 +1833,596 @@ Use of uninitialized value in pattern match (m//) at /build/gbrowse-2.56+dfsg/install_util/GBrowseInstall.pm line 778. Building GBrowse Files found in blib/arch: installing files in blib/lib into architecture dependent library tree -Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/auto/Bio/Graphics/Browser2/CAlign/CAlign.so Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/auto/Bio/Graphics/Browser2/CAlign/CAlign.bs -Installing debian/gbrowse/man/man1/gbrowse_sync_aws_slave.pl.1p -Installing debian/gbrowse/man/man1/load_genbank.pl.1p -Installing debian/gbrowse/man/man1/gbrowse_clean.pl.1p +Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/auto/Bio/Graphics/Browser2/CAlign/CAlign.so +Installing debian/gbrowse/man/man1/gbrowse_aws_balancer.pl.1p Installing debian/gbrowse/man/man1/ucsc_genes2gff.pl.1p -Installing debian/gbrowse/man/man1/wiggle2gff3.pl.1p Installing debian/gbrowse/man/man1/make_das_conf.pl.1p -Installing debian/gbrowse/man/man1/bed2gff3.pl.1p -Installing debian/gbrowse/man/man1/gbrowse_aws_balancer.pl.1p Installing debian/gbrowse/man/man1/gbrowse_grow_cloud_vol.pl.1p +Installing debian/gbrowse/man/man1/gbrowse_clean.pl.1p +Installing debian/gbrowse/man/man1/bed2gff3.pl.1p +Installing debian/gbrowse/man/man1/wiggle2gff3.pl.1p +Installing debian/gbrowse/man/man1/gbrowse_sync_aws_slave.pl.1p +Installing debian/gbrowse/man/man1/load_genbank.pl.1p Installing debian/gbrowse/man/man1/gtf2gff3.pl.1p +Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse_gmap Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse_img -Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse_details +Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse +Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse_syn Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/das -Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse_gmap Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse_key_img Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse_login -Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse_syn +Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse_details Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbgff -Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse -Installing debian/gbrowse/etc/gbrowse/GBrowse.conf -Installing debian/gbrowse/etc/gbrowse/volvox.conf -Installing debian/gbrowse/etc/gbrowse/aws_balancer.conf -Installing debian/gbrowse/etc/gbrowse/yeast_chr1+2.conf +Installing debian/gbrowse/etc/gbrowse/pop_demo.conf Installing debian/gbrowse/etc/gbrowse/submitter_plugin.conf -Installing debian/gbrowse/etc/gbrowse/yeast_simple.conf +Installing debian/gbrowse/etc/gbrowse/yeast_chr1+2.conf Installing debian/gbrowse/etc/gbrowse/detail_select_menu.conf +Installing debian/gbrowse/etc/gbrowse/slave_preload.conf Installing debian/gbrowse/etc/gbrowse/log4perl.conf -Installing debian/gbrowse/etc/gbrowse/pop_demo.conf +Installing debian/gbrowse/etc/gbrowse/GBrowse.conf Installing debian/gbrowse/etc/gbrowse/enzymes.txt Installing debian/gbrowse/etc/gbrowse/renderfarm.conf +Installing debian/gbrowse/etc/gbrowse/aws_balancer.conf +Installing debian/gbrowse/etc/gbrowse/yeast_simple.conf +Installing debian/gbrowse/etc/gbrowse/volvox.conf Installing debian/gbrowse/etc/gbrowse/yeast_renderfarm.conf -Installing debian/gbrowse/etc/gbrowse/slave_preload.conf -Installing debian/gbrowse/etc/gbrowse/languages/ja.pm Installing debian/gbrowse/etc/gbrowse/languages/zh_cn.pm -Installing debian/gbrowse/etc/gbrowse/languages/ru.pm -Installing debian/gbrowse/etc/gbrowse/languages/POSIX.pm Installing debian/gbrowse/etc/gbrowse/languages/en.pm -Installing debian/gbrowse/etc/gbrowse/languages/is.pm -Installing debian/gbrowse/etc/gbrowse/languages/fr.pm -Installing debian/gbrowse/etc/gbrowse/languages/zh.pm -Installing debian/gbrowse/etc/gbrowse/languages/pl.pm +Installing debian/gbrowse/etc/gbrowse/languages/ru.pm Installing debian/gbrowse/etc/gbrowse/languages/es.pm Installing debian/gbrowse/etc/gbrowse/languages/it.pm +Installing debian/gbrowse/etc/gbrowse/languages/nl.pm Installing debian/gbrowse/etc/gbrowse/languages/ko.pm +Installing debian/gbrowse/etc/gbrowse/languages/pl.pm +Installing debian/gbrowse/etc/gbrowse/languages/POSIX.pm +Installing debian/gbrowse/etc/gbrowse/languages/fr.pm Installing debian/gbrowse/etc/gbrowse/languages/de.pm -Installing debian/gbrowse/etc/gbrowse/languages/nl.pm -Installing debian/gbrowse/etc/gbrowse/themes/warm_colors -Installing debian/gbrowse/etc/gbrowse/themes/solid_gray_colors -Installing debian/gbrowse/etc/gbrowse/themes/transparent_colors -Installing debian/gbrowse/etc/gbrowse/plugins/LDAPAuthenticate.pm -Installing debian/gbrowse/etc/gbrowse/plugins/test.pm -Installing debian/gbrowse/etc/gbrowse/plugins/GeneFinder.pm +Installing debian/gbrowse/etc/gbrowse/languages/zh.pm +Installing debian/gbrowse/etc/gbrowse/languages/ja.pm +Installing debian/gbrowse/etc/gbrowse/languages/is.pm +Installing debian/gbrowse/etc/gbrowse/plugins/PrimerDesigner.pm +Installing debian/gbrowse/etc/gbrowse/plugins/FilterTest.pm +Installing debian/gbrowse/etc/gbrowse/plugins/CreateBlastDB.pm +Installing debian/gbrowse/etc/gbrowse/plugins/Aligner.pm +Installing debian/gbrowse/etc/gbrowse/plugins/TrackDumper.pm Installing debian/gbrowse/etc/gbrowse/plugins/Blat.pm +Installing debian/gbrowse/etc/gbrowse/plugins/BatchDumper.pm +Installing debian/gbrowse/etc/gbrowse/plugins/AlignTwoSequences.pm Installing debian/gbrowse/etc/gbrowse/plugins/AttributeHiliter.pm -Installing debian/gbrowse/etc/gbrowse/plugins/Submitter.pm -Installing debian/gbrowse/etc/gbrowse/plugins/OligoFinder.pm Installing debian/gbrowse/etc/gbrowse/plugins/TestAuthenticator.pm -Installing debian/gbrowse/etc/gbrowse/plugins/SimpleTrackFinder.pm -Installing debian/gbrowse/etc/gbrowse/plugins/RandomGene.pm -Installing debian/gbrowse/etc/gbrowse/plugins/BatchDumper.pm -Installing debian/gbrowse/etc/gbrowse/plugins/SinWave.pm -Installing debian/gbrowse/etc/gbrowse/plugins/CMapDumper.pm -Installing debian/gbrowse/etc/gbrowse/plugins/FastaDumper.pm +Installing debian/gbrowse/etc/gbrowse/plugins/Submitter.pm Installing debian/gbrowse/etc/gbrowse/plugins/ProteinDumper.pm Installing debian/gbrowse/etc/gbrowse/plugins/FBTableDumper.pm -Installing debian/gbrowse/etc/gbrowse/plugins/CreateBlastDB.pm +Installing debian/gbrowse/etc/gbrowse/plugins/CMapDumper.pm +Installing debian/gbrowse/etc/gbrowse/plugins/GeneFinder.pm Installing debian/gbrowse/etc/gbrowse/plugins/TrackFinder.pm -Installing debian/gbrowse/etc/gbrowse/plugins/Spectrogram.pm -Installing debian/gbrowse/etc/gbrowse/plugins/FilterTest.pm -Installing debian/gbrowse/etc/gbrowse/plugins/Aligner.pm -Installing debian/gbrowse/etc/gbrowse/plugins/AlignTwoSequences.pm -Installing debian/gbrowse/etc/gbrowse/plugins/PamAuthenticate.pm Installing debian/gbrowse/etc/gbrowse/plugins/SourceTrackFinder.pm -Installing debian/gbrowse/etc/gbrowse/plugins/TrackDumper.pm Installing debian/gbrowse/etc/gbrowse/plugins/RestrictionAnnotator.pm +Installing debian/gbrowse/etc/gbrowse/plugins/test.pm +Installing debian/gbrowse/etc/gbrowse/plugins/Spectrogram.pm Installing debian/gbrowse/etc/gbrowse/plugins/SequenceDumper.pm -Installing debian/gbrowse/etc/gbrowse/plugins/PrimerDesigner.pm +Installing debian/gbrowse/etc/gbrowse/plugins/RandomGene.pm +Installing debian/gbrowse/etc/gbrowse/plugins/PamAuthenticate.pm +Installing debian/gbrowse/etc/gbrowse/plugins/SimpleTrackFinder.pm Installing debian/gbrowse/etc/gbrowse/plugins/TestFinder.pm -Installing debian/gbrowse/etc/gbrowse/synteny/rice_synteny.conf +Installing debian/gbrowse/etc/gbrowse/plugins/OligoFinder.pm +Installing debian/gbrowse/etc/gbrowse/plugins/FastaDumper.pm +Installing debian/gbrowse/etc/gbrowse/plugins/SinWave.pm +Installing debian/gbrowse/etc/gbrowse/plugins/LDAPAuthenticate.pm Installing debian/gbrowse/etc/gbrowse/synteny/oryza.synconf.disabled.conf +Installing debian/gbrowse/etc/gbrowse/synteny/rice_synteny.conf Installing debian/gbrowse/etc/gbrowse/synteny/wild_rice_synteny.conf +Installing debian/gbrowse/etc/gbrowse/themes/warm_colors +Installing debian/gbrowse/etc/gbrowse/themes/transparent_colors +Installing debian/gbrowse/etc/gbrowse/themes/solid_gray_colors +Installing debian/gbrowse/etc/gbrowse/MobyServices/text_html_renderer.pm +Installing debian/gbrowse/etc/gbrowse/MobyServices/b64_encoded_jpeg_renderer.pm Installing debian/gbrowse/etc/gbrowse/MobyServices/text_formatted_renderer.pm +Installing debian/gbrowse/etc/gbrowse/MobyServices/text_plain_renderer.pm +Installing debian/gbrowse/etc/gbrowse/MobyServices/text_xml_renderer.pm Installing debian/gbrowse/etc/gbrowse/MobyServices/GbrowseServices.PMS -Installing debian/gbrowse/etc/gbrowse/MobyServices/b64_encoded_jpeg_renderer.pm -Installing debian/gbrowse/etc/gbrowse/MobyServices/GbrowseServices.pm Installing debian/gbrowse/etc/gbrowse/MobyServices/moby.conf -Installing debian/gbrowse/etc/gbrowse/MobyServices/text_html_renderer.pm -Installing debian/gbrowse/etc/gbrowse/MobyServices/text_xml_renderer.pm +Installing debian/gbrowse/etc/gbrowse/MobyServices/GbrowseServices.pm Installing debian/gbrowse/etc/gbrowse/MobyServices/b64_encoded_gif_renderer.pm -Installing debian/gbrowse/etc/gbrowse/MobyServices/text_plain_renderer.pm -Installing debian/gbrowse/var/lib/gbrowse/databases/yeast_scaffolds/chr2.fa Installing debian/gbrowse/var/lib/gbrowse/databases/yeast_scaffolds/chr1.fa +Installing debian/gbrowse/var/lib/gbrowse/databases/yeast_scaffolds/chr2.fa Installing debian/gbrowse/var/lib/gbrowse/databases/yeast_scaffolds/chromosomes.gff3 -Installing debian/gbrowse/var/lib/gbrowse/databases/admin_uploads/README -Installing debian/gbrowse/var/lib/gbrowse/databases/pop_demo/pop_demo.gff3 -Installing debian/gbrowse/var/lib/gbrowse/databases/yeast_chr1+2/dummy.fa -Installing debian/gbrowse/var/lib/gbrowse/databases/yeast_chr1+2/yeast_chr1+2.gff3 -Installing debian/gbrowse/var/lib/gbrowse/databases/ideograms/human_cytobands.gff Installing debian/gbrowse/var/lib/gbrowse/databases/ideograms/mouse_cytobands.gff +Installing debian/gbrowse/var/lib/gbrowse/databases/ideograms/human_cytobands.gff Installing debian/gbrowse/var/lib/gbrowse/databases/ideograms/rat_cytobands.gff +Installing debian/gbrowse/var/lib/gbrowse/databases/admin_uploads/README Installing debian/gbrowse/var/lib/gbrowse/databases/gbrowse_syn/alignments/rice.aln.gz Installing debian/gbrowse/var/lib/gbrowse/databases/gbrowse_syn/wild_rice/wild_rice.gff3 Installing debian/gbrowse/var/lib/gbrowse/databases/gbrowse_syn/rice/rice.gff3 +Installing debian/gbrowse/var/lib/gbrowse/databases/yeast_chr1+2/yeast_chr1+2.gff3 +Installing debian/gbrowse/var/lib/gbrowse/databases/yeast_chr1+2/dummy.fa +Installing debian/gbrowse/var/lib/gbrowse/databases/pop_demo/pop_demo.gff3 +Installing debian/gbrowse/usr/share/gbrowse/htdocs/gbrowse_karyotype_help.html Installing debian/gbrowse/usr/share/gbrowse/htdocs/cloud_index.html -Installing debian/gbrowse/usr/share/gbrowse/htdocs/general_help.html.zh -Installing debian/gbrowse/usr/share/gbrowse/htdocs/annotation_help.html Installing debian/gbrowse/usr/share/gbrowse/htdocs/index.html +Installing debian/gbrowse/usr/share/gbrowse/htdocs/general_help.html.zh Installing debian/gbrowse/usr/share/gbrowse/htdocs/gbrowse_syn_help.html Installing debian/gbrowse/usr/share/gbrowse/htdocs/gmod_cog.jpeg -Installing debian/gbrowse/usr/share/gbrowse/htdocs/gbrowse_karyotype_help.html -Installing debian/gbrowse/usr/share/gbrowse/htdocs/vbox_index.html Installing debian/gbrowse/usr/share/gbrowse/htdocs/general_help.html -Installing debian/gbrowse/usr/share/gbrowse/htdocs/example_scripts/gbrowse_new_sessionid.pl -Installing debian/gbrowse/usr/share/gbrowse/htdocs/example_scripts/index.html -Installing debian/gbrowse/usr/share/gbrowse/htdocs/example_scripts/gbrowse_get_sessionid.pl -Installing debian/gbrowse/usr/share/gbrowse/htdocs/example_scripts/gbrowse_upload_file.pl -Installing debian/gbrowse/usr/share/gbrowse/htdocs/example_scripts/test_file.bed -Installing debian/gbrowse/usr/share/gbrowse/htdocs/example_scripts/README -Installing debian/gbrowse/usr/share/gbrowse/htdocs/example_scripts/gbrowse_upload_data.pl -Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/karyotype.js -Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/subtracktable.css -Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/overviewSelect.js -Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/controls.js -Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/subtracktable.js -Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/GBox.js -Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/ajax_upload.js -Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/ruler.js -Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/toggle.js -Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/detailSelect.js -Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/buttons.js -Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/sound.js -Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/snapshotManager.js -Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/login.js -Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/track_pan.js -Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/prototype.js -Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/controller.js -Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/balloon.js -Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/effects.js -Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/autocomplete.js -Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/menu.js -Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/box.js -Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/track.js -Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/slider.js -Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/rubber.js -Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/dragdrop.js -Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/scriptaculous.js -Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/builder.js -Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/regionSelect.js -Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/unittest.js -Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/trackFavorites.js -Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/track_configure.js -Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/x_cook.js -Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/scrollfix.js -Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/balloon.config.js -Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/tabs.js +Installing debian/gbrowse/usr/share/gbrowse/htdocs/vbox_index.html +Installing debian/gbrowse/usr/share/gbrowse/htdocs/annotation_help.html Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/subtracktable.css Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/gbrowse_transparent.css -Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/gbrowse_elements.css -Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/menulink.png +Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/gbrowse.css Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/snapshots.css -Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/gbrowse_solid.css -Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/titlebar-default.css -Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/gbrowse_warm.css Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/menulink_active.png -Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/gbrowse.css -Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/gbrowse_autocomplete.css Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/titlebar-safari.css -Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/tracks.css Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/karyotype.css -Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/dropdown.css -Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/helper.css +Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/tracks.css +Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/gbrowse_solid.css +Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/menulink.png +Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/gbrowse_elements.css +Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/gbrowse_warm.css +Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/titlebar-default.css +Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/gbrowse_autocomplete.css Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/default_theme.css -Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-left-on.png +Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/helper.css +Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/dropdown.css Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/favicon.ico -Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-left-open.png +Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-down-on.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/icon.png -Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-right-open.png -Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-down-open.png -Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/pattern2.png -Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-left.png +Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-left-on.png +Installing 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debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/elegans_core.gff3 -Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_phyloalign.fa -Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_geneproducts.gff3 +Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/HEADER.html Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_all.fa +Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/elegans_sts.gff3 +Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/elegans_deletion.gff3 Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/elegans_acceptor.gff3 -Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_trace.scf -Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/HEADER.html -Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_est_targets.gff3 -Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/dog1_1700.wig +Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_phyloalign.fa Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_array.gff3 -Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/ests.fa -Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_matches.gff3 -Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_genes.gff3 +Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_geneproducts.gff3 Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/bin/random_dna.pl -Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/bin/reformat.pl +Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/bin/expression_levels.pl Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/bin/random_feature.pl -Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/bin/make_exon.pl +Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/bin/reformat.pl Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/bin/random_segments.pl -Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/bin/expression_levels.pl -Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/conf_files/volvox_quarter.conf -Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/conf_files/volvox_final.conf -Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/conf_files/volvox.conf +Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/bin/make_exon.pl Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/conf_files/volvox_halfway.conf -Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/conf_files/volvox_Phylo.conf -Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/conf_files/elegans_extra.conf -Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/conf_files/volvox_refactored.conf +Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/conf_files/volvox_quarter.conf Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/conf_files/volvox_final_withPhylo.conf +Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/conf_files/elegans_extra.conf Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/conf_files/elegans_core.conf Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/conf_files/HEADER.html +Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/conf_files/volvox.conf +Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/conf_files/volvox_Phylo.conf +Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/conf_files/volvox_refactored.conf +Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/conf_files/volvox_final.conf +Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox3.gff +Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox4b.gff +Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox8.gff +Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox6.gff +Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_repeats.gff +Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_extra.gff +Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox9.gff +Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_acceptor.gff +Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox4a.gff +Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox1.gff +Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_expression.gff +Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox_all.gff +Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox4.gff +Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox2.gff +Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox5.gff +Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_core.gff +Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_deletion.gff +Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox7.gff +Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_sts.gff +Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/GBrowse/ConfigData.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Karyotype.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/GBrowseFeature.pm -Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/RenderPanels.pm +Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/PadAlignment.pm +Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Region.pm +Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Session.pm +Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/PluginSet.pm +Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/AuthorizedFeatureFile.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/RegionSearch.pm -Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/SendMail.pm -Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/UserDB.pm -Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/GFFhelper.pm -Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/I18n.pm -Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Action.pm +Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataBase.pm +Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Plugin.pm +Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/UserTracks.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/SubtrackTable.pm +Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Markup.pm +Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/TrackDumper.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/OptionPick.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/RemoteSet.pm -Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/AuthorizedFeatureFile.pm -Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/UserTracks.pm -Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataBase.pm -Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Plugin.pm +Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/I18n.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/CAlign.pm -Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/PadAlignment.pm -Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/ExternalData.pm -Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Realign.pm +Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/GFFhelper.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Util.pm -Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/PluginSet.pm +Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Realign.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Shellwords.pm -Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/CachedTrack.pm -Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Markup.pm -Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/TrackDumper.pm +Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/ExternalData.pm +Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Action.pm +Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataSource.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render.pm +Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/CachedTrack.pm +Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/RenderPanels.pm +Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/SendMail.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader.pm -Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataSource.pm -Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Region.pm -Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Session.pm +Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/UserDB.pm +Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/UserTracks/Database.pm +Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/UserTracks/Filesystem.pm +Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/TrackDumper/RichSeqMaker.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Plugin/AuthPlugin.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/generic.pm +Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/useq.pm +Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/archive.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/featurefile.pm -Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/gff.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/wiggle.pm -Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/bigwig.pm -Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/sam.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/bam.pm +Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/bed.pm +Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/sam.pm +Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/bigwig.pm +Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/gff.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/gff3.pm -Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/archive.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/wig2bigwig.pm -Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/useq.pm -Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/bed.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/bigbed.pm -Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/TrackDumper/RichSeqMaker.pm -Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/UserTracks/Filesystem.pm -Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/UserTracks/Database.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/Slave.pm +Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/HTML.pm +Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/SnapshotManager.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/TrackConfig.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/Login.pm -Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/SnapshotManager.pm -Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/HTML.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/Slave/Status.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/Slave/AWS_Balancer.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/HTML/TrackListing.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/HTML/TrackListing/Categories.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/Tagger.pm -Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/SeqFeature/Store/Alias.pm +Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/Tagger/mysql.pm +Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/Tagger/Tag.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/SeqFeature/Store/BedLoader.pm -Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/GFF/Aggregator/waba_alignment.pm -Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/GFF/Aggregator/match_gap.pm +Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/SeqFeature/Store/Alias.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/GFF/Aggregator/wormbase_gene.pm +Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/GFF/Aggregator/match_gap.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/GFF/Aggregator/reftranscript.pm -Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/Tagger/mysql.pm -Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/Tagger/Tag.pm -Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/GBrowse/ConfigData.pm -Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/CGI/Toggle.pm +Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/GFF/Aggregator/waba_alignment.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Legacy/Graphics/Browser.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Legacy/Graphics/Browser/I18n.pm -Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Legacy/Graphics/Browser/PageSettings.pm -Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Legacy/Graphics/Browser/Util.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Legacy/Graphics/Browser/Synteny.pm +Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Legacy/Graphics/Browser/Util.pm +Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Legacy/Graphics/Browser/PageSettings.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Legacy/DB/SyntenyBlock.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Legacy/DB/SyntenyIO.pm -Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Markup.3pm -Installing debian/gbrowse/man/man3/Legacy::Graphics::Browser.3pm -Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Render.3pm +Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/CGI/Toggle.pm +Installing debian/gbrowse/man/man3/Bio::DB::GFF::Aggregator::waba_alignment.3pm +Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::AuthorizedFeatureFile.3pm +Installing debian/gbrowse/man/man3/Bio::DB::Tagger.3pm +Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Realign.3pm Installing debian/gbrowse/man/man3/GBrowse::ConfigData.3pm +Installing debian/gbrowse/man/man3/Legacy::Graphics::Browser.3pm +Installing debian/gbrowse/man/man3/Bio::DB::GFF::Aggregator::match_gap.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Plugin.3pm -Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::PadAlignment.3pm +Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Markup.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Plugin::AuthPlugin.3pm -Installing debian/gbrowse/man/man3/Bio::DB::Tagger.3pm -Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::DataBase.3pm -Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::RemoteSet.3pm -Installing debian/gbrowse/man/man3/Bio::DB::GFF::Aggregator::waba_alignment.3pm -Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Region.3pm -Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::DataSource.3pm -Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Render::Slave::AWS_Balancer.3pm -Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::RenderPanels.3pm -Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::AuthorizedFeatureFile.3pm -Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::DataLoader::archive.3pm -Installing debian/gbrowse/man/man3/CGI::Toggle.3pm -Installing debian/gbrowse/man/man3/Bio::DB::GFF::Aggregator::reftranscript.3pm -Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::DataLoader::useq.3pm +Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Render.3pm Installing debian/gbrowse/man/man3/Bio::DB::Tagger::Tag.3pm -Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::PluginSet.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Render::Slave::Status.3pm -Installing debian/gbrowse/man/man3/Bio::DB::GFF::Aggregator::wormbase_gene.3pm +Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Util.3pm +Installing debian/gbrowse/man/man3/CGI::Toggle.3pm +Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::PluginSet.3pm +Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Render::Slave::AWS_Balancer.3pm +Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Region.3pm +Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::RenderPanels.3pm +Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::DataBase.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::RegionSearch.3pm -Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Realign.3pm +Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::DataLoader::useq.3pm +Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::GFFhelper.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::CAlign.3pm +Installing debian/gbrowse/man/man3/Bio::DB::GFF::Aggregator::wormbase_gene.3pm +Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::DataSource.3pm +Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::DataLoader::archive.3pm +Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::RemoteSet.3pm +Installing debian/gbrowse/man/man3/Bio::DB::GFF::Aggregator::reftranscript.3pm +Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::PadAlignment.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::OptionPick.3pm -Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::GFFhelper.3pm -Installing debian/gbrowse/man/man3/Bio::DB::GFF::Aggregator::match_gap.3pm -Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Util.3pm Installing debian/gbrowse/man/man3/Bio::DB::SeqFeature::Store::Alias.3pm -Installing debian/gbrowse/bin/gbrowse_aws_balancer.pl -Installing debian/gbrowse/bin/gbrowse_clean.pl +Installing debian/gbrowse/bin/gbrowse_sync_aws_slave.pl +Installing debian/gbrowse/bin/bed2gff3.pl +Installing debian/gbrowse/bin/gbrowse_syn_load_alignment_database.pl +Installing debian/gbrowse/bin/scan_gbrowse.pl Installing debian/gbrowse/bin/gtf2gff3.pl Installing debian/gbrowse/bin/gbrowse_metadb_config.pl -Installing debian/gbrowse/bin/gbrowse_slave -Installing debian/gbrowse/bin/bed2gff3.pl -Installing debian/gbrowse/bin/gbrowse_create_account.pl +Installing debian/gbrowse/bin/gbrowse_set_admin_passwd.pl Installing debian/gbrowse/bin/gbrowse_configure_slaves.pl -Installing debian/gbrowse/bin/make_das_conf.pl +Installing debian/gbrowse/bin/ucsc_genes2gff.pl +Installing debian/gbrowse/bin/gbrowse_grow_cloud_vol.pl Installing debian/gbrowse/bin/gbrowse_change_passwd.pl -Installing debian/gbrowse/bin/gbrowse_sync_aws_slave.pl +Installing debian/gbrowse/bin/make_das_conf.pl +Installing debian/gbrowse/bin/load_genbank.pl +Installing debian/gbrowse/bin/gbrowse_clean.pl +Installing debian/gbrowse/bin/gbrowse_aws_balancer.pl Installing debian/gbrowse/bin/gbrowse_import_ucsc_db.pl +Installing debian/gbrowse/bin/gbrowse_create_account.pl Installing debian/gbrowse/bin/wiggle2gff3.pl -Installing debian/gbrowse/bin/gbrowse_set_admin_passwd.pl -Installing debian/gbrowse/bin/ucsc_genes2gff.pl -Installing debian/gbrowse/bin/scan_gbrowse.pl -Installing debian/gbrowse/bin/gbrowse_grow_cloud_vol.pl Installing debian/gbrowse/bin/gbrowse_syn_load_alignments_msa.pl -Installing debian/gbrowse/bin/gbrowse_syn_load_alignment_database.pl -Installing debian/gbrowse/bin/load_genbank.pl +Installing debian/gbrowse/bin/gbrowse_slave #./Build apache_conf > debian/gbrowse/etc/gbrowse/gbrowse_apache2.conf perl Build.PL --conf=/etc/gbrowse --htdocs=/usr/share/gbrowse/htdocs --tmp=/var/cache/gbrowse --databases=/var/lib/gbrowse/databases --cgibin=/usr/lib/cgi-bin/gbrowse --www-user=www-data --registration_done=1 --persistent=/var/lib/gbrowse --installetc=y WARNING: the following files are missing in your kit: @@ -2552,10 +2584,10 @@ Use of uninitialized value $wwwuser in substitution (s///) at /build/gbrowse-2.56+dfsg/install_util/GBrowseInstall.pm line 871, line 20. Building GBrowse Files found in blib/arch: installing files in blib/lib into architecture dependent library tree -Installing debian/gbrowse/etc/default/gbrowse-aws-balancer -Installing debian/gbrowse/etc/default/gbrowse-slave Installing debian/gbrowse/etc/init.d/gbrowse-aws-balancer Installing debian/gbrowse/etc/init.d/gbrowse-slave +Installing debian/gbrowse/etc/default/gbrowse-aws-balancer +Installing debian/gbrowse/etc/default/gbrowse-slave Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/GBrowse/ConfigData.pm mv debian/gbrowse/lib/perl5/* debian/gbrowse/usr/share/perl5 # Remove arch dependant data @@ -2617,22 +2649,24 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'gbrowse-calign' in '../gbrowse-calign_2.56+dfsg-4_armhf.deb'. -dpkg-deb: building package 'gbrowse' in '../gbrowse_2.56+dfsg-4_all.deb'. dpkg-deb: building package 'gbrowse-calign-dbgsym' in '../gbrowse-calign-dbgsym_2.56+dfsg-4_armhf.deb'. +dpkg-deb: building package 'gbrowse-calign' in '../gbrowse-calign_2.56+dfsg-4_armhf.deb'. dpkg-deb: building package 'gbrowse-data' in '../gbrowse-data_2.56+dfsg-4_all.deb'. +dpkg-deb: building package 'gbrowse' in '../gbrowse_2.56+dfsg-4_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../gbrowse_2.56+dfsg-4_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/2144/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2144/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/18674 and its subdirectories -I: Current time: Wed Jun 24 17:57:34 -12 2020 -I: pbuilder-time-stamp: 1593064654 +I: removing directory /srv/workspace/pbuilder/2144 and its subdirectories +I: Current time: Thu Jun 25 20:01:18 +14 2020 +I: pbuilder-time-stamp: 1593064878