Diff of the two buildlogs: -- --- b1/build.log 2020-10-06 09:07:31.999926440 +0000 +++ b2/build.log 2020-10-06 09:18:22.784094282 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Oct 5 21:04:47 -12 2020 -I: pbuilder-time-stamp: 1601975087 +I: Current time: Tue Oct 6 23:07:45 +14 2020 +I: pbuilder-time-stamp: 1601975265 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Fri Nov 14 05:04:23 2014 -12 +gpgv: Signature made Sat Nov 15 07:04:23 2014 +14 gpgv: using RSA key 3362F7031A4992E1 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./chemfp_1.1p1-2.1.dsc @@ -26,136 +26,170 @@ dpkg-source: info: unpacking chemfp_1.1p1-2.1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/17029/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/13545/tmp/hooks/D01_modify_environment starting +debug: Running on jtk1a. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/13545/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/13545/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.0.3(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='51689f670b084e398a0c7f0340a1c443' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='17029' - PS1='# ' - PS2='> ' + INVOCATION_ID=9fb2a616c9a0468baf45418777a179d1 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=13545 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.7nIFo69lSk/pbuilderrc_QSSp --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.7nIFo69lSk/b1 --logfile b1/build.log chemfp_1.1p1-2.1.dsc' - SUDO_GID='111' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:8000/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.7nIFo69lSk/pbuilderrc_tdbE --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.7nIFo69lSk/b2 --logfile b2/build.log chemfp_1.1p1-2.1.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:8000/ I: uname -a - Linux ff4a 4.19.0-11-armmp-lpae #1 SMP Debian 4.19.146-1 (2020-09-17) armv7l GNU/Linux + Linux i-capture-the-hostname 4.19.0-11-armmp-lpae #1 SMP Debian 4.19.146-1 (2020-09-17) armv7l GNU/Linux I: ls -l /bin total 3328 - -rwxr-xr-x 1 root root 767656 Apr 17 2019 bash - -rwxr-xr-x 3 root root 26052 Jul 10 2019 bunzip2 - -rwxr-xr-x 3 root root 26052 Jul 10 2019 bzcat - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep - -rwxr-xr-x 3 root root 26052 Jul 10 2019 bzip2 - -rwxr-xr-x 1 root root 9636 Jul 10 2019 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore - -rwxr-xr-x 1 root root 22432 Feb 28 2019 cat - -rwxr-xr-x 1 root root 38868 Feb 28 2019 chgrp - -rwxr-xr-x 1 root root 38836 Feb 28 2019 chmod - -rwxr-xr-x 1 root root 42972 Feb 28 2019 chown - -rwxr-xr-x 1 root root 88376 Feb 28 2019 cp - -rwxr-xr-x 1 root root 75516 Jan 17 2019 dash - -rwxr-xr-x 1 root root 71648 Feb 28 2019 date - -rwxr-xr-x 1 root root 51212 Feb 28 2019 dd - -rwxr-xr-x 1 root root 55672 Feb 28 2019 df - -rwxr-xr-x 1 root root 88444 Feb 28 2019 dir - -rwxr-xr-x 1 root root 54872 Jan 9 2019 dmesg - lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname - -rwxr-xr-x 1 root root 22364 Feb 28 2019 echo - -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep - -rwxr-xr-x 1 root root 18260 Feb 28 2019 false - -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep - -rwxr-xr-x 1 root root 47356 Jan 9 2019 findmnt - -rwsr-xr-x 1 root root 21980 Apr 22 07:38 fusermount - -rwxr-xr-x 1 root root 124508 Jan 7 2019 grep - -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip - -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe - -rwxr-xr-x 1 root root 64232 Jan 5 2019 gzip - -rwxr-xr-x 1 root root 13784 Sep 26 2018 hostname - -rwxr-xr-x 1 root root 43044 Feb 28 2019 ln - -rwxr-xr-x 1 root root 34932 Jul 26 2018 login - -rwxr-xr-x 1 root root 88444 Feb 28 2019 ls - -rwxr-xr-x 1 root root 67036 Jan 9 2019 lsblk - -rwxr-xr-x 1 root root 47168 Feb 28 2019 mkdir - -rwxr-xr-x 1 root root 43040 Feb 28 2019 mknod - -rwxr-xr-x 1 root root 26552 Feb 28 2019 mktemp - -rwxr-xr-x 1 root root 26024 Jan 9 2019 more - -rwsr-xr-x 1 root root 34268 Jan 9 2019 mount - -rwxr-xr-x 1 root root 9688 Jan 9 2019 mountpoint - -rwxr-xr-x 1 root root 84284 Feb 28 2019 mv - lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 22416 Feb 28 2019 pwd - lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash - -rwxr-xr-x 1 root root 26504 Feb 28 2019 readlink - -rwxr-xr-x 1 root root 42968 Feb 28 2019 rm - -rwxr-xr-x 1 root root 26496 Feb 28 2019 rmdir - -rwxr-xr-x 1 root root 14136 Jan 21 2019 run-parts - -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Sep 20 20:25 sh -> dash - -rwxr-xr-x 1 root root 22384 Feb 28 2019 sleep - -rwxr-xr-x 1 root root 51124 Feb 28 2019 stty - -rwsr-xr-x 1 root root 42472 Jan 9 2019 su - -rwxr-xr-x 1 root root 22392 Feb 28 2019 sync - -rwxr-xr-x 1 root root 283324 Apr 23 2019 tar - -rwxr-xr-x 1 root root 9808 Jan 21 2019 tempfile - -rwxr-xr-x 1 root root 63464 Feb 28 2019 touch - -rwxr-xr-x 1 root root 18260 Feb 28 2019 true - -rwxr-xr-x 1 root root 9636 Apr 22 07:38 ulockmgr_server - -rwsr-xr-x 1 root root 21976 Jan 9 2019 umount - -rwxr-xr-x 1 root root 22380 Feb 28 2019 uname - -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress - -rwxr-xr-x 1 root root 88444 Feb 28 2019 vdir - -rwxr-xr-x 1 root root 21980 Jan 9 2019 wdctl - -rwxr-xr-x 1 root root 946 Jan 21 2019 which - lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat - -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp - -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff - -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep - -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep - -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce - -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep - -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless - -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore - -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew -I: user script /srv/workspace/pbuilder/17029/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 767656 Apr 18 2019 bash + -rwxr-xr-x 3 root root 26052 Jul 11 2019 bunzip2 + -rwxr-xr-x 3 root root 26052 Jul 11 2019 bzcat + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep + -rwxr-xr-x 3 root root 26052 Jul 11 2019 bzip2 + -rwxr-xr-x 1 root root 9636 Jul 11 2019 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore + -rwxr-xr-x 1 root root 22432 Mar 1 2019 cat + -rwxr-xr-x 1 root root 38868 Mar 1 2019 chgrp + -rwxr-xr-x 1 root root 38836 Mar 1 2019 chmod + -rwxr-xr-x 1 root root 42972 Mar 1 2019 chown + -rwxr-xr-x 1 root root 88376 Mar 1 2019 cp + -rwxr-xr-x 1 root root 75516 Jan 18 2019 dash + -rwxr-xr-x 1 root root 71648 Mar 1 2019 date + -rwxr-xr-x 1 root root 51212 Mar 1 2019 dd + -rwxr-xr-x 1 root root 55672 Mar 1 2019 df + -rwxr-xr-x 1 root root 88444 Mar 1 2019 dir + -rwxr-xr-x 1 root root 54872 Jan 10 2019 dmesg + lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname + -rwxr-xr-x 1 root root 22364 Mar 1 2019 echo + -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep + -rwxr-xr-x 1 root root 18260 Mar 1 2019 false + -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep + -rwxr-xr-x 1 root root 47356 Jan 10 2019 findmnt + -rwsr-xr-x 1 root root 21980 Apr 23 09:38 fusermount + -rwxr-xr-x 1 root root 124508 Jan 8 2019 grep + -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip + -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe + -rwxr-xr-x 1 root root 64232 Jan 6 2019 gzip + -rwxr-xr-x 1 root root 13784 Sep 27 2018 hostname + -rwxr-xr-x 1 root root 43044 Mar 1 2019 ln + -rwxr-xr-x 1 root root 34932 Jul 27 2018 login + -rwxr-xr-x 1 root root 88444 Mar 1 2019 ls + -rwxr-xr-x 1 root root 67036 Jan 10 2019 lsblk + -rwxr-xr-x 1 root root 47168 Mar 1 2019 mkdir + -rwxr-xr-x 1 root root 43040 Mar 1 2019 mknod + -rwxr-xr-x 1 root root 26552 Mar 1 2019 mktemp + -rwxr-xr-x 1 root root 26024 Jan 10 2019 more + -rwsr-xr-x 1 root root 34268 Jan 10 2019 mount + -rwxr-xr-x 1 root root 9688 Jan 10 2019 mountpoint + -rwxr-xr-x 1 root root 84284 Mar 1 2019 mv + lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 22416 Mar 1 2019 pwd + lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash + -rwxr-xr-x 1 root root 26504 Mar 1 2019 readlink + -rwxr-xr-x 1 root root 42968 Mar 1 2019 rm + -rwxr-xr-x 1 root root 26496 Mar 1 2019 rmdir + -rwxr-xr-x 1 root root 14136 Jan 22 2019 run-parts + -rwxr-xr-x 1 root root 76012 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Oct 6 23:09 sh -> bash + lrwxrwxrwx 1 root root 4 Sep 21 22:27 sh.distrib -> dash + -rwxr-xr-x 1 root root 22384 Mar 1 2019 sleep + -rwxr-xr-x 1 root root 51124 Mar 1 2019 stty + -rwsr-xr-x 1 root root 42472 Jan 10 2019 su + -rwxr-xr-x 1 root root 22392 Mar 1 2019 sync + -rwxr-xr-x 1 root root 283324 Apr 24 2019 tar + -rwxr-xr-x 1 root root 9808 Jan 22 2019 tempfile + -rwxr-xr-x 1 root root 63464 Mar 1 2019 touch + -rwxr-xr-x 1 root root 18260 Mar 1 2019 true + -rwxr-xr-x 1 root root 9636 Apr 23 09:38 ulockmgr_server + -rwsr-xr-x 1 root root 21976 Jan 10 2019 umount + -rwxr-xr-x 1 root root 22380 Mar 1 2019 uname + -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress + -rwxr-xr-x 1 root root 88444 Mar 1 2019 vdir + -rwxr-xr-x 1 root root 21980 Jan 10 2019 wdctl + -rwxr-xr-x 1 root root 946 Jan 22 2019 which + lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat + -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp + -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff + -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep + -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep + -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce + -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep + -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless + -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore + -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew +I: user script /srv/workspace/pbuilder/13545/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -288,7 +322,7 @@ Get: 89 http://deb.debian.org/debian buster/main armhf python-openbabel armhf 2.4.1+dfsg-3 [571 kB] Get: 90 http://deb.debian.org/debian buster/main armhf rdkit-data all 201809.1+dfsg-6 [6771 kB] Get: 91 http://deb.debian.org/debian buster/main armhf python-rdkit armhf 201809.1+dfsg-6 [2658 kB] -Fetched 85.0 MB in 8s (10.7 MB/s) +Fetched 85.0 MB in 16s (5326 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18932 files and directories currently installed.) @@ -680,7 +714,7 @@ fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/chemfp-1.1p1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/chemfp-1.1p1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package chemfp dpkg-buildpackage: info: source version 1.1p1-2.1 dpkg-buildpackage: info: source distribution unstable @@ -726,47 +760,47 @@ creating build creating build/lib.linux-armv7l-2.7 creating build/lib.linux-armv7l-2.7/chemfp -copying chemfp/fps_io.py -> build/lib.linux-armv7l-2.7/chemfp -copying chemfp/io.py -> build/lib.linux-armv7l-2.7/chemfp -copying chemfp/error_handlers.py -> build/lib.linux-armv7l-2.7/chemfp -copying chemfp/search.py -> build/lib.linux-armv7l-2.7/chemfp -copying chemfp/openbabel_patterns.py -> build/lib.linux-armv7l-2.7/chemfp -copying chemfp/Watcher.py -> build/lib.linux-armv7l-2.7/chemfp -copying chemfp/sdf_reader.py -> build/lib.linux-armv7l-2.7/chemfp +copying chemfp/slow.py -> build/lib.linux-armv7l-2.7/chemfp copying chemfp/rdkit_patterns.py -> build/lib.linux-armv7l-2.7/chemfp -copying chemfp/fps_search.py -> build/lib.linux-armv7l-2.7/chemfp -copying chemfp/pattern_fingerprinter.py -> build/lib.linux-armv7l-2.7/chemfp +copying chemfp/openbabel_patterns.py -> build/lib.linux-armv7l-2.7/chemfp copying chemfp/openeye.py -> build/lib.linux-armv7l-2.7/chemfp -copying chemfp/slow.py -> build/lib.linux-armv7l-2.7/chemfp -copying chemfp/decoders.py -> build/lib.linux-armv7l-2.7/chemfp -copying chemfp/bitops.py -> build/lib.linux-armv7l-2.7/chemfp -copying chemfp/arena.py -> build/lib.linux-armv7l-2.7/chemfp -copying chemfp/argparse.py -> build/lib.linux-armv7l-2.7/chemfp -copying chemfp/__init__.py -> build/lib.linux-armv7l-2.7/chemfp +copying chemfp/search.py -> build/lib.linux-armv7l-2.7/chemfp copying chemfp/rdkit.py -> build/lib.linux-armv7l-2.7/chemfp +copying chemfp/sdf_reader.py -> build/lib.linux-armv7l-2.7/chemfp +copying chemfp/openeye_patterns.py -> build/lib.linux-armv7l-2.7/chemfp +copying chemfp/argparse.py -> build/lib.linux-armv7l-2.7/chemfp +copying chemfp/io.py -> build/lib.linux-armv7l-2.7/chemfp +copying chemfp/arena.py -> build/lib.linux-armv7l-2.7/chemfp +copying chemfp/decoders.py -> build/lib.linux-armv7l-2.7/chemfp copying chemfp/openbabel.py -> build/lib.linux-armv7l-2.7/chemfp +copying chemfp/pattern_fingerprinter.py -> build/lib.linux-armv7l-2.7/chemfp +copying chemfp/Watcher.py -> build/lib.linux-armv7l-2.7/chemfp +copying chemfp/fps_io.py -> build/lib.linux-armv7l-2.7/chemfp +copying chemfp/__init__.py -> build/lib.linux-armv7l-2.7/chemfp +copying chemfp/bitops.py -> build/lib.linux-armv7l-2.7/chemfp +copying chemfp/fps_search.py -> build/lib.linux-armv7l-2.7/chemfp copying chemfp/encodings.py -> build/lib.linux-armv7l-2.7/chemfp -copying chemfp/openeye_patterns.py -> build/lib.linux-armv7l-2.7/chemfp +copying chemfp/error_handlers.py -> build/lib.linux-armv7l-2.7/chemfp copying chemfp/types.py -> build/lib.linux-armv7l-2.7/chemfp creating build/lib.linux-armv7l-2.7/chemfp/commandline -copying chemfp/commandline/oe2fps.py -> build/lib.linux-armv7l-2.7/chemfp/commandline -copying chemfp/commandline/__init__.py -> build/lib.linux-armv7l-2.7/chemfp/commandline -copying chemfp/commandline/simsearch.py -> build/lib.linux-armv7l-2.7/chemfp/commandline copying chemfp/commandline/ob2fps.py -> build/lib.linux-armv7l-2.7/chemfp/commandline -copying chemfp/commandline/cmdsupport.py -> build/lib.linux-armv7l-2.7/chemfp/commandline copying chemfp/commandline/rdkit2fps.py -> build/lib.linux-armv7l-2.7/chemfp/commandline -copying chemfp/commandline/sdf2fps.py -> build/lib.linux-armv7l-2.7/chemfp/commandline copying chemfp/commandline/fpsmerge.py -> build/lib.linux-armv7l-2.7/chemfp/commandline +copying chemfp/commandline/simsearch.py -> build/lib.linux-armv7l-2.7/chemfp/commandline +copying chemfp/commandline/sdf2fps.py -> build/lib.linux-armv7l-2.7/chemfp/commandline +copying chemfp/commandline/oe2fps.py -> build/lib.linux-armv7l-2.7/chemfp/commandline +copying chemfp/commandline/__init__.py -> build/lib.linux-armv7l-2.7/chemfp/commandline +copying chemfp/commandline/cmdsupport.py -> build/lib.linux-armv7l-2.7/chemfp/commandline creating build/lib.linux-armv7l-2.7/chemfp/futures copying chemfp/futures/process.py -> build/lib.linux-armv7l-2.7/chemfp/futures +copying chemfp/futures/thread.py -> build/lib.linux-armv7l-2.7/chemfp/futures copying chemfp/futures/__init__.py -> build/lib.linux-armv7l-2.7/chemfp/futures copying chemfp/futures/_base.py -> build/lib.linux-armv7l-2.7/chemfp/futures -copying chemfp/futures/thread.py -> build/lib.linux-armv7l-2.7/chemfp/futures copying chemfp/futures/_compat.py -> build/lib.linux-armv7l-2.7/chemfp/futures creating build/lib.linux-armv7l-2.7/chemfp/progressbar copying chemfp/progressbar/widgets.py -> build/lib.linux-armv7l-2.7/chemfp/progressbar -copying chemfp/progressbar/__init__.py -> build/lib.linux-armv7l-2.7/chemfp/progressbar copying chemfp/progressbar/compat.py -> build/lib.linux-armv7l-2.7/chemfp/progressbar +copying chemfp/progressbar/__init__.py -> build/lib.linux-armv7l-2.7/chemfp/progressbar copying chemfp/rdmaccs.patterns -> build/lib.linux-armv7l-2.7/chemfp copying chemfp/substruct.patterns -> build/lib.linux-armv7l-2.7/chemfp running build_ext @@ -819,11 +853,11 @@ copying and adjusting rdkit2fps -> build/scripts-2.7 copying and adjusting sdf2fps -> build/scripts-2.7 copying and adjusting simsearch -> build/scripts-2.7 -changing mode of build/scripts-2.7/ob2fps from 644 to 755 -changing mode of build/scripts-2.7/oe2fps from 644 to 755 -changing mode of build/scripts-2.7/rdkit2fps from 644 to 755 -changing mode of build/scripts-2.7/sdf2fps from 644 to 755 -changing mode of build/scripts-2.7/simsearch from 644 to 755 +changing mode of build/scripts-2.7/ob2fps from 664 to 775 +changing mode of build/scripts-2.7/oe2fps from 664 to 775 +changing mode of build/scripts-2.7/rdkit2fps from 664 to 775 +changing mode of build/scripts-2.7/sdf2fps from 664 to 775 +changing mode of build/scripts-2.7/simsearch from 664 to 775 make[1]: Leaving directory '/build/chemfp-1.1p1' debian/rules override_dh_auto_test make[1]: Entering directory '/build/chemfp-1.1p1' @@ -831,62 +865,62 @@ py_path="/build/chemfp-1.1p1/build/lib.`python${PY} -c 'from distutils import util; print util.get_platform();'`-$PY/" ; \ (cd tests; PYTHONPATH=$py_path python$PY unit2 discover); \ done -ss............................................................................................................................[21:06:55] SMILES Parse Error: syntax error for input: 'Q' -..[21:06:55] WARNING: not removing hydrogen atom without neighbors -[21:06:55] Atom line too short: ' 28 1 1 0 0 0' on line 37 -[21:06:55] WARNING: not removing hydrogen atom without neighbors -.[21:06:55] WARNING: not removing hydrogen atom without neighbors -[21:06:55] Atom line too short: ' 28 1 1 0 0 0' on line 37 -.[21:06:55] WARNING: not removing hydrogen atom without neighbors -[21:06:55] Atom line too short: ' 28 1 1 0 0 0' on line 37 -.[21:06:55] WARNING: not removing hydrogen atom without neighbors -....[21:06:55] WARNING: not removing hydrogen atom without neighbors -[21:06:55] WARNING: not removing hydrogen atom without neighbors -[21:06:55] WARNING: not removing hydrogen atom without neighbors -.[21:06:55] WARNING: not removing hydrogen atom without neighbors -[21:06:55] WARNING: not removing hydrogen atom without neighbors -[21:06:55] WARNING: not removing hydrogen atom without neighbors -.[21:06:55] WARNING: not removing hydrogen atom without neighbors -[21:06:55] WARNING: not removing hydrogen atom without neighbors -[21:06:55] WARNING: not removing hydrogen atom without neighbors -.[21:06:55] WARNING: not removing hydrogen atom without neighbors -[21:06:55] WARNING: not removing hydrogen atom without neighbors -[21:06:55] WARNING: not removing hydrogen atom without neighbors -.....[21:06:55] WARNING: not removing hydrogen atom without neighbors -.[21:06:55] WARNING: not removing hydrogen atom without neighbors -[21:06:55] WARNING: not removing hydrogen atom without neighbors -[21:06:55] WARNING: not removing hydrogen atom without neighbors -.[21:06:55] WARNING: not removing hydrogen atom without neighbors -[21:06:55] WARNING: not removing hydrogen atom without neighbors -[21:06:55] WARNING: not removing hydrogen atom without neighbors -.[21:06:55] WARNING: not removing hydrogen atom without neighbors -.[21:06:55] WARNING: not removing hydrogen atom without neighbors -.[21:06:55] WARNING: not removing hydrogen atom without neighbors -[21:06:55] WARNING: not removing hydrogen atom without neighbors -[21:06:55] WARNING: not removing hydrogen atom without neighbors -.[21:06:55] WARNING: not removing hydrogen atom without neighbors -[21:06:55] WARNING: not removing hydrogen atom without neighbors -[21:06:55] WARNING: not removing hydrogen atom without neighbors -.[21:06:55] WARNING: not removing hydrogen atom without neighbors -.F[21:06:55] WARNING: not removing hydrogen atom without neighbors -[21:06:55] WARNING: not removing hydrogen atom without neighbors -.[21:06:55] WARNING: not removing hydrogen atom without neighbors -[21:06:55] WARNING: not removing hydrogen atom without neighbors -[21:06:55] WARNING: not removing hydrogen atom without neighbors -.[21:06:55] WARNING: not removing hydrogen atom without neighbors -[21:06:55] WARNING: not removing hydrogen atom without neighbors -[21:06:55] WARNING: not removing hydrogen atom without neighbors -.[21:06:55] WARNING: not removing hydrogen atom without neighbors -[21:06:55] WARNING: not removing hydrogen atom without neighbors -...........F.F.F.F.F.....F.........................ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss.......................................................................................................................................................................................................................................................................................ssssssssssssssssssss...[21:07:06] WARNING: not removing hydrogen atom without neighbors -.[21:07:06] WARNING: not removing hydrogen atom without neighbors -[21:07:06] WARNING: not removing hydrogen atom without neighbors -[21:07:06] WARNING: not removing hydrogen atom without neighbors -.[21:07:06] WARNING: not removing hydrogen atom without neighbors -[21:07:06] WARNING: not removing hydrogen atom without neighbors -[21:07:06] WARNING: not removing hydrogen atom without neighbors -.[21:07:06] WARNING: not removing hydrogen atom without neighbors -..................................................................................................................................................................................s................................ssssssss........ss....s.....s................................................... +.......ss..................................................s..............................................................ssssssss...ssssssssssss..................................................................................................................ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss............................................................................................................................................................................................................................................................ssssssssssssssssssss...[23:16:18] WARNING: not removing hydrogen atom without neighbors +.[23:16:18] WARNING: not removing hydrogen atom without neighbors +[23:16:18] WARNING: not removing hydrogen atom without neighbors +[23:16:18] WARNING: not removing hydrogen atom without neighbors +.[23:16:18] WARNING: not removing hydrogen atom without neighbors +[23:16:18] WARNING: not removing hydrogen atom without neighbors +[23:16:18] WARNING: not removing hydrogen atom without neighbors +.[23:16:18] WARNING: not removing hydrogen atom without neighbors +........................................................................................................................................................[23:16:27] SMILES Parse Error: syntax error for input: 'Q' +..[23:16:27] WARNING: not removing hydrogen atom without neighbors +[23:16:27] Atom line too short: ' 28 1 1 0 0 0' on line 37 +[23:16:27] WARNING: not removing hydrogen atom without neighbors +.[23:16:27] WARNING: not removing hydrogen atom without neighbors +[23:16:27] Atom line too short: ' 28 1 1 0 0 0' on line 37 +.[23:16:27] WARNING: not removing hydrogen atom without neighbors +[23:16:27] Atom line too short: ' 28 1 1 0 0 0' on line 37 +.[23:16:27] WARNING: not removing hydrogen atom without neighbors +....[23:16:27] WARNING: not removing hydrogen atom without neighbors +[23:16:27] WARNING: not removing hydrogen atom without neighbors +[23:16:27] WARNING: not removing hydrogen atom without neighbors +.[23:16:27] WARNING: not removing hydrogen atom without neighbors +[23:16:27] WARNING: not removing hydrogen atom without neighbors +[23:16:27] WARNING: not removing hydrogen atom without neighbors +.[23:16:27] WARNING: not removing hydrogen atom without neighbors +[23:16:27] WARNING: not removing hydrogen atom without neighbors +[23:16:27] WARNING: not removing hydrogen atom without neighbors +.[23:16:27] WARNING: not removing hydrogen atom without neighbors +[23:16:27] WARNING: not removing hydrogen atom without neighbors +[23:16:27] WARNING: not removing hydrogen atom without neighbors +.....[23:16:29] WARNING: not removing hydrogen atom without neighbors +.[23:16:29] WARNING: not removing hydrogen atom without neighbors +[23:16:29] WARNING: not removing hydrogen atom without neighbors +[23:16:29] WARNING: not removing hydrogen atom without neighbors +.[23:16:29] WARNING: not removing hydrogen atom without neighbors +[23:16:29] WARNING: not removing hydrogen atom without neighbors +[23:16:29] WARNING: not removing hydrogen atom without neighbors +.[23:16:29] WARNING: not removing hydrogen atom without neighbors +.[23:16:29] WARNING: not removing hydrogen atom without neighbors +.[23:16:29] WARNING: not removing hydrogen atom without neighbors +[23:16:29] WARNING: not removing hydrogen atom without neighbors +[23:16:29] WARNING: not removing hydrogen atom without neighbors +.[23:16:29] WARNING: not removing hydrogen atom without neighbors +[23:16:29] WARNING: not removing hydrogen atom without neighbors +[23:16:29] WARNING: not removing hydrogen atom without neighbors +.[23:16:29] WARNING: not removing hydrogen atom without neighbors +.F[23:16:29] WARNING: not removing hydrogen atom without neighbors +[23:16:29] WARNING: not removing hydrogen atom without neighbors +.[23:16:29] WARNING: not removing hydrogen atom without neighbors +[23:16:29] WARNING: not removing hydrogen atom without neighbors +[23:16:29] WARNING: not removing hydrogen atom without neighbors +.[23:16:29] WARNING: not removing hydrogen atom without neighbors +[23:16:29] WARNING: not removing hydrogen atom without neighbors +[23:16:29] WARNING: not removing hydrogen atom without neighbors +.[23:16:29] WARNING: not removing hydrogen atom without neighbors +[23:16:29] WARNING: not removing hydrogen atom without neighbors +...........F.F.F.F.F.....F................................ss....s.....s..........F.............. ====================================================================== FAIL: test_output (test_rdkit2fps.TestIO) ---------------------------------------------------------------------- @@ -943,10 +977,33 @@ self.assertEquals(result[0], _fp1 + "\t9425004") AssertionError: '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\t9425004' != '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\t9425004' +====================================================================== +FAIL: test_select_fastest (test_methods.TestSelectFastestMethod) ---------------------------------------------------------------------- -Ran 896 tests in 20.297s +Traceback (most recent call last): + File "/build/chemfp-1.1p1/tests/test_methods.py", line 237, in test_select_fastest + self.assertEquals(best_methods1, best_methods2) # This might fail if two methods have nearly identical timings +AssertionError: {'align1': 'LUT8-1', 'align8-small': 'LUT8-4', 'align8-large': 'Lauradoux', 'ali [truncated]... != {'align1': 'LUT8-1', 'align8-small': 'LUT8-1', 'align8-large': 'LUT8-4', 'align- [truncated]... + {'align-ssse3': 'Gillies', + 'align1': 'LUT8-1', + 'align4': 'LUT16-4', +- 'align8-large': 'Lauradoux', +? ^^^^^^^^ + ++ 'align8-large': 'LUT8-4', +? ^^^^^ -FAILED (failures=7, skipped=129) +- 'align8-small': 'LUT8-4'} +? ^ + ++ 'align8-small': 'LUT8-1'} +? ^ + + +---------------------------------------------------------------------- +Ran 896 tests in 94.676s + +FAILED (failures=8, skipped=129) make[1]: [debian/rules:26: override_dh_auto_test] Error 1 (ignored) make[1]: Leaving directory '/build/chemfp-1.1p1' fakeroot debian/rules binary @@ -973,85 +1030,85 @@ creating /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages copying build/lib.linux-armv7l-2.7/_chemfp.so -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages creating /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp -copying build/lib.linux-armv7l-2.7/chemfp/fps_io.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/rdkit.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp -copying build/lib.linux-armv7l-2.7/chemfp/io.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp -copying build/lib.linux-armv7l-2.7/chemfp/openbabel_patterns.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp -copying build/lib.linux-armv7l-2.7/chemfp/sdf_reader.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp -creating /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/progressbar -copying build/lib.linux-armv7l-2.7/chemfp/progressbar/widgets.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/progressbar -copying build/lib.linux-armv7l-2.7/chemfp/progressbar/__init__.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/progressbar -copying build/lib.linux-armv7l-2.7/chemfp/progressbar/compat.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/progressbar -copying build/lib.linux-armv7l-2.7/chemfp/error_handlers.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp -copying build/lib.linux-armv7l-2.7/chemfp/fps_search.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp -copying build/lib.linux-armv7l-2.7/chemfp/search.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp -copying build/lib.linux-armv7l-2.7/chemfp/openbabel_patterns.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp -copying build/lib.linux-armv7l-2.7/chemfp/Watcher.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp -copying build/lib.linux-armv7l-2.7/chemfp/sdf_reader.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp -copying build/lib.linux-armv7l-2.7/chemfp/rdkit_patterns.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp -copying build/lib.linux-armv7l-2.7/chemfp/fps_io.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp -copying build/lib.linux-armv7l-2.7/chemfp/types.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp -copying build/lib.linux-armv7l-2.7/chemfp/fps_search.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/search.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp -copying build/lib.linux-armv7l-2.7/chemfp/bitops.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp -copying build/lib.linux-armv7l-2.7/chemfp/pattern_fingerprinter.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp -copying build/lib.linux-armv7l-2.7/chemfp/error_handlers.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp -copying build/lib.linux-armv7l-2.7/chemfp/openeye.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp -copying build/lib.linux-armv7l-2.7/chemfp/openeye.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/slow.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp -copying build/lib.linux-armv7l-2.7/chemfp/decoders.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp -copying build/lib.linux-armv7l-2.7/chemfp/pattern_fingerprinter.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp -copying build/lib.linux-armv7l-2.7/chemfp/bitops.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp -copying build/lib.linux-armv7l-2.7/chemfp/arena.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp creating /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/commandline -copying build/lib.linux-armv7l-2.7/chemfp/commandline/simsearch.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/commandline +copying build/lib.linux-armv7l-2.7/chemfp/commandline/ob2fps.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/commandline copying build/lib.linux-armv7l-2.7/chemfp/commandline/rdkit2fps.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/commandline +copying build/lib.linux-armv7l-2.7/chemfp/commandline/rdkit2fps.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/commandline +copying build/lib.linux-armv7l-2.7/chemfp/commandline/fpsmerge.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/commandline +copying build/lib.linux-armv7l-2.7/chemfp/commandline/simsearch.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/commandline copying build/lib.linux-armv7l-2.7/chemfp/commandline/ob2fps.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/commandline -copying build/lib.linux-armv7l-2.7/chemfp/commandline/oe2fps.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/commandline +copying build/lib.linux-armv7l-2.7/chemfp/commandline/sdf2fps.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/commandline +copying build/lib.linux-armv7l-2.7/chemfp/commandline/__init__.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/commandline copying build/lib.linux-armv7l-2.7/chemfp/commandline/sdf2fps.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/commandline +copying build/lib.linux-armv7l-2.7/chemfp/commandline/simsearch.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/commandline +copying build/lib.linux-armv7l-2.7/chemfp/commandline/oe2fps.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/commandline copying build/lib.linux-armv7l-2.7/chemfp/commandline/__init__.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/commandline -copying build/lib.linux-armv7l-2.7/chemfp/commandline/simsearch.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/commandline copying build/lib.linux-armv7l-2.7/chemfp/commandline/cmdsupport.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/commandline -copying build/lib.linux-armv7l-2.7/chemfp/commandline/ob2fps.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/commandline copying build/lib.linux-armv7l-2.7/chemfp/commandline/cmdsupport.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/commandline -copying build/lib.linux-armv7l-2.7/chemfp/commandline/rdkit2fps.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/commandline -copying build/lib.linux-armv7l-2.7/chemfp/commandline/sdf2fps.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/commandline -copying build/lib.linux-armv7l-2.7/chemfp/commandline/fpsmerge.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/commandline -copying build/lib.linux-armv7l-2.7/chemfp/commandline/__init__.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/commandline -copying build/lib.linux-armv7l-2.7/chemfp/io.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp -copying build/lib.linux-armv7l-2.7/chemfp/argparse.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp -copying build/lib.linux-armv7l-2.7/chemfp/argparse.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp -copying build/lib.linux-armv7l-2.7/chemfp/__init__.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp -copying build/lib.linux-armv7l-2.7/chemfp/rdmaccs.patterns -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp -copying build/lib.linux-armv7l-2.7/chemfp/slow.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/openbabel.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/arena.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp -copying build/lib.linux-armv7l-2.7/chemfp/rdkit.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp +copying build/lib.linux-armv7l-2.7/chemfp/openbabel_patterns.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp +copying build/lib.linux-armv7l-2.7/chemfp/rdkit_patterns.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp +copying build/lib.linux-armv7l-2.7/chemfp/openbabel_patterns.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp +copying build/lib.linux-armv7l-2.7/chemfp/openeye.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp +copying build/lib.linux-armv7l-2.7/chemfp/search.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp +copying build/lib.linux-armv7l-2.7/chemfp/pattern_fingerprinter.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp +copying build/lib.linux-armv7l-2.7/chemfp/error_handlers.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp +copying build/lib.linux-armv7l-2.7/chemfp/rdmaccs.patterns -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp +copying build/lib.linux-armv7l-2.7/chemfp/substruct.patterns -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp +copying build/lib.linux-armv7l-2.7/chemfp/fps_search.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp +copying build/lib.linux-armv7l-2.7/chemfp/sdf_reader.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp +copying build/lib.linux-armv7l-2.7/chemfp/fps_io.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp creating /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/futures copying build/lib.linux-armv7l-2.7/chemfp/futures/process.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/futures +copying build/lib.linux-armv7l-2.7/chemfp/futures/thread.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/futures copying build/lib.linux-armv7l-2.7/chemfp/futures/__init__.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/futures copying build/lib.linux-armv7l-2.7/chemfp/futures/_base.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/futures -copying build/lib.linux-armv7l-2.7/chemfp/futures/thread.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/futures copying build/lib.linux-armv7l-2.7/chemfp/futures/_compat.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/futures +copying build/lib.linux-armv7l-2.7/chemfp/argparse.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp +copying build/lib.linux-armv7l-2.7/chemfp/rdkit.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp +copying build/lib.linux-armv7l-2.7/chemfp/__init__.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp +copying build/lib.linux-armv7l-2.7/chemfp/sdf_reader.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp +copying build/lib.linux-armv7l-2.7/chemfp/openeye_patterns.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp +copying build/lib.linux-armv7l-2.7/chemfp/argparse.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp +copying build/lib.linux-armv7l-2.7/chemfp/io.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp +copying build/lib.linux-armv7l-2.7/chemfp/arena.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp +copying build/lib.linux-armv7l-2.7/chemfp/types.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp +copying build/lib.linux-armv7l-2.7/chemfp/decoders.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/openbabel.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp +creating /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/progressbar +copying build/lib.linux-armv7l-2.7/chemfp/progressbar/widgets.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/progressbar +copying build/lib.linux-armv7l-2.7/chemfp/progressbar/compat.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/progressbar +copying build/lib.linux-armv7l-2.7/chemfp/progressbar/__init__.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/progressbar +copying build/lib.linux-armv7l-2.7/chemfp/pattern_fingerprinter.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp +copying build/lib.linux-armv7l-2.7/chemfp/Watcher.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp +copying build/lib.linux-armv7l-2.7/chemfp/openeye.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp +copying build/lib.linux-armv7l-2.7/chemfp/fps_io.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp +copying build/lib.linux-armv7l-2.7/chemfp/slow.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp +copying build/lib.linux-armv7l-2.7/chemfp/__init__.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp +copying build/lib.linux-armv7l-2.7/chemfp/bitops.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp +copying build/lib.linux-armv7l-2.7/chemfp/fps_search.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp +copying build/lib.linux-armv7l-2.7/chemfp/bitops.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/encodings.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp -copying build/lib.linux-armv7l-2.7/chemfp/openeye_patterns.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp -copying build/lib.linux-armv7l-2.7/chemfp/types.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp +copying build/lib.linux-armv7l-2.7/chemfp/io.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp +copying build/lib.linux-armv7l-2.7/chemfp/error_handlers.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/encodings.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp -copying build/lib.linux-armv7l-2.7/chemfp/substruct.patterns -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp -copying build/lib.linux-armv7l-2.7/chemfp/__init__.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp +copying build/lib.linux-armv7l-2.7/chemfp/types.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp running install_scripts creating /build/chemfp-1.1p1/debian/python-chemfp/usr/bin -copying build/scripts-2.7/simsearch -> /build/chemfp-1.1p1/debian/python-chemfp/usr/bin -copying build/scripts-2.7/oe2fps -> /build/chemfp-1.1p1/debian/python-chemfp/usr/bin copying build/scripts-2.7/sdf2fps -> /build/chemfp-1.1p1/debian/python-chemfp/usr/bin copying build/scripts-2.7/rdkit2fps -> /build/chemfp-1.1p1/debian/python-chemfp/usr/bin +copying build/scripts-2.7/simsearch -> /build/chemfp-1.1p1/debian/python-chemfp/usr/bin +copying build/scripts-2.7/oe2fps -> /build/chemfp-1.1p1/debian/python-chemfp/usr/bin copying build/scripts-2.7/ob2fps -> /build/chemfp-1.1p1/debian/python-chemfp/usr/bin -changing mode of /build/chemfp-1.1p1/debian/python-chemfp/usr/bin/simsearch to 755 -changing mode of /build/chemfp-1.1p1/debian/python-chemfp/usr/bin/oe2fps to 755 -changing mode of /build/chemfp-1.1p1/debian/python-chemfp/usr/bin/sdf2fps to 755 -changing mode of /build/chemfp-1.1p1/debian/python-chemfp/usr/bin/rdkit2fps to 755 -changing mode of /build/chemfp-1.1p1/debian/python-chemfp/usr/bin/ob2fps to 755 +changing mode of /build/chemfp-1.1p1/debian/python-chemfp/usr/bin/sdf2fps to 775 +changing mode of /build/chemfp-1.1p1/debian/python-chemfp/usr/bin/rdkit2fps to 775 +changing mode of /build/chemfp-1.1p1/debian/python-chemfp/usr/bin/simsearch to 775 +changing mode of /build/chemfp-1.1p1/debian/python-chemfp/usr/bin/oe2fps to 775 +changing mode of /build/chemfp-1.1p1/debian/python-chemfp/usr/bin/ob2fps to 775 running install_egg_info Writing /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp-1.1p1.egg-info dh_installdocs -O--parallel @@ -1085,20 +1142,22 @@ dpkg-gencontrol: warning: package python-chemfp: substitution variable ${python:Versions} unused, but is defined dh_md5sums -O--parallel dh_builddeb -O--parallel -dpkg-deb: building package 'python-chemfp' in '../python-chemfp_1.1p1-2.1_armhf.deb'. dpkg-deb: building package 'python-chemfp-dbgsym' in '../python-chemfp-dbgsym_1.1p1-2.1_armhf.deb'. +dpkg-deb: building package 'python-chemfp' in '../python-chemfp_1.1p1-2.1_armhf.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../chemfp_1.1p1-2.1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/13545/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/13545/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/17029 and its subdirectories -I: Current time: Mon Oct 5 21:07:28 -12 2020 -I: pbuilder-time-stamp: 1601975248 +I: removing directory /srv/workspace/pbuilder/13545 and its subdirectories +I: Current time: Tue Oct 6 23:18:17 +14 2020 +I: pbuilder-time-stamp: 1601975897