Diff of the two buildlogs: -- --- b1/build.log 2020-05-30 21:59:55.841994287 +0000 +++ b2/build.log 2020-05-31 01:41:31.481932876 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat May 30 09:24:41 -12 2020 -I: pbuilder-time-stamp: 1590873881 +I: Current time: Sun May 31 12:01:04 +14 2020 +I: pbuilder-time-stamp: 1590876064 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Fri Jul 13 03:19:24 2018 -12 +gpgv: Signature made Sat Jul 14 05:19:24 2018 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -33,136 +33,170 @@ dpkg-source: info: applying help.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/12561/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/30594/tmp/hooks/D01_modify_environment starting +debug: Running on cb3a. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/30594/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/30594/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.0.3(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=2' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='d3e647400deb4b9a8462b126ffeaade2' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='12561' - PS1='# ' - PS2='> ' + INVOCATION_ID=ee2252ecd8914a9282b803d26a7bc531 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=30594 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.PnlG52eht9/pbuilderrc_iEAf --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.PnlG52eht9/b1 --logfile b1/build.log cain_1.10+dfsg-3.dsc' - SUDO_GID='116' - SUDO_UID='112' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:8000/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.PnlG52eht9/pbuilderrc_Zkoz --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.PnlG52eht9/b2 --logfile b2/build.log cain_1.10+dfsg-3.dsc' + SUDO_GID=115 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:8000/ I: uname -a - Linux cbxi4b 4.19.0-9-armmp #1 SMP Debian 4.19.118-2 (2020-04-29) armv7l GNU/Linux + Linux i-capture-the-hostname 4.19.0-9-armmp-lpae #1 SMP Debian 4.19.118-2 (2020-04-29) armv7l GNU/Linux I: ls -l /bin total 3328 - -rwxr-xr-x 1 root root 767656 Apr 17 2019 bash - -rwxr-xr-x 3 root root 26052 Jul 10 2019 bunzip2 - -rwxr-xr-x 3 root root 26052 Jul 10 2019 bzcat - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep - -rwxr-xr-x 3 root root 26052 Jul 10 2019 bzip2 - -rwxr-xr-x 1 root root 9636 Jul 10 2019 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore - -rwxr-xr-x 1 root root 22432 Feb 28 2019 cat - -rwxr-xr-x 1 root root 38868 Feb 28 2019 chgrp - -rwxr-xr-x 1 root root 38836 Feb 28 2019 chmod - -rwxr-xr-x 1 root root 42972 Feb 28 2019 chown - -rwxr-xr-x 1 root root 88376 Feb 28 2019 cp - -rwxr-xr-x 1 root root 75516 Jan 17 2019 dash - -rwxr-xr-x 1 root root 71648 Feb 28 2019 date - -rwxr-xr-x 1 root root 51212 Feb 28 2019 dd - -rwxr-xr-x 1 root root 55672 Feb 28 2019 df - -rwxr-xr-x 1 root root 88444 Feb 28 2019 dir - -rwxr-xr-x 1 root root 54872 Jan 9 2019 dmesg - lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname - -rwxr-xr-x 1 root root 22364 Feb 28 2019 echo - -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep - -rwxr-xr-x 1 root root 18260 Feb 28 2019 false - -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep - -rwxr-xr-x 1 root root 47356 Jan 9 2019 findmnt - -rwsr-xr-x 1 root root 21980 Apr 22 07:38 fusermount - -rwxr-xr-x 1 root root 124508 Jan 7 2019 grep - -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip - -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe - -rwxr-xr-x 1 root root 64232 Jan 5 2019 gzip - -rwxr-xr-x 1 root root 13784 Sep 26 2018 hostname - -rwxr-xr-x 1 root root 43044 Feb 28 2019 ln - -rwxr-xr-x 1 root root 34932 Jul 26 2018 login - -rwxr-xr-x 1 root root 88444 Feb 28 2019 ls - -rwxr-xr-x 1 root root 67036 Jan 9 2019 lsblk - -rwxr-xr-x 1 root root 47168 Feb 28 2019 mkdir - -rwxr-xr-x 1 root root 43040 Feb 28 2019 mknod - -rwxr-xr-x 1 root root 26552 Feb 28 2019 mktemp - -rwxr-xr-x 1 root root 26024 Jan 9 2019 more - -rwsr-xr-x 1 root root 34268 Jan 9 2019 mount - -rwxr-xr-x 1 root root 9688 Jan 9 2019 mountpoint - -rwxr-xr-x 1 root root 84284 Feb 28 2019 mv - lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 22416 Feb 28 2019 pwd - lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash - -rwxr-xr-x 1 root root 26504 Feb 28 2019 readlink - -rwxr-xr-x 1 root root 42968 Feb 28 2019 rm - -rwxr-xr-x 1 root root 26496 Feb 28 2019 rmdir - -rwxr-xr-x 1 root root 14136 Jan 21 2019 run-parts - -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 May 28 21:45 sh -> dash - -rwxr-xr-x 1 root root 22384 Feb 28 2019 sleep - -rwxr-xr-x 1 root root 51124 Feb 28 2019 stty - -rwsr-xr-x 1 root root 42472 Jan 9 2019 su - -rwxr-xr-x 1 root root 22392 Feb 28 2019 sync - -rwxr-xr-x 1 root root 283324 Apr 23 2019 tar - -rwxr-xr-x 1 root root 9808 Jan 21 2019 tempfile - -rwxr-xr-x 1 root root 63464 Feb 28 2019 touch - -rwxr-xr-x 1 root root 18260 Feb 28 2019 true - -rwxr-xr-x 1 root root 9636 Apr 22 07:38 ulockmgr_server - -rwsr-xr-x 1 root root 21976 Jan 9 2019 umount - -rwxr-xr-x 1 root root 22380 Feb 28 2019 uname - -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress - -rwxr-xr-x 1 root root 88444 Feb 28 2019 vdir - -rwxr-xr-x 1 root root 21980 Jan 9 2019 wdctl - -rwxr-xr-x 1 root root 946 Jan 21 2019 which - lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat - -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp - -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff - -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep - -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep - -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce - -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep - -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless - -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore - -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew -I: user script /srv/workspace/pbuilder/12561/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 767656 Apr 18 2019 bash + -rwxr-xr-x 3 root root 26052 Jul 11 2019 bunzip2 + -rwxr-xr-x 3 root root 26052 Jul 11 2019 bzcat + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep + -rwxr-xr-x 3 root root 26052 Jul 11 2019 bzip2 + -rwxr-xr-x 1 root root 9636 Jul 11 2019 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore + -rwxr-xr-x 1 root root 22432 Mar 1 2019 cat + -rwxr-xr-x 1 root root 38868 Mar 1 2019 chgrp + -rwxr-xr-x 1 root root 38836 Mar 1 2019 chmod + -rwxr-xr-x 1 root root 42972 Mar 1 2019 chown + -rwxr-xr-x 1 root root 88376 Mar 1 2019 cp + -rwxr-xr-x 1 root root 75516 Jan 18 2019 dash + -rwxr-xr-x 1 root root 71648 Mar 1 2019 date + -rwxr-xr-x 1 root root 51212 Mar 1 2019 dd + -rwxr-xr-x 1 root root 55672 Mar 1 2019 df + -rwxr-xr-x 1 root root 88444 Mar 1 2019 dir + -rwxr-xr-x 1 root root 54872 Jan 10 2019 dmesg + lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname + -rwxr-xr-x 1 root root 22364 Mar 1 2019 echo + -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep + -rwxr-xr-x 1 root root 18260 Mar 1 2019 false + -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep + -rwxr-xr-x 1 root root 47356 Jan 10 2019 findmnt + -rwsr-xr-x 1 root root 21980 Apr 23 09:38 fusermount + -rwxr-xr-x 1 root root 124508 Jan 8 2019 grep + -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip + -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe + -rwxr-xr-x 1 root root 64232 Jan 6 2019 gzip + -rwxr-xr-x 1 root root 13784 Sep 27 2018 hostname + -rwxr-xr-x 1 root root 43044 Mar 1 2019 ln + -rwxr-xr-x 1 root root 34932 Jul 27 2018 login + -rwxr-xr-x 1 root root 88444 Mar 1 2019 ls + -rwxr-xr-x 1 root root 67036 Jan 10 2019 lsblk + -rwxr-xr-x 1 root root 47168 Mar 1 2019 mkdir + -rwxr-xr-x 1 root root 43040 Mar 1 2019 mknod + -rwxr-xr-x 1 root root 26552 Mar 1 2019 mktemp + -rwxr-xr-x 1 root root 26024 Jan 10 2019 more + -rwsr-xr-x 1 root root 34268 Jan 10 2019 mount + -rwxr-xr-x 1 root root 9688 Jan 10 2019 mountpoint + -rwxr-xr-x 1 root root 84284 Mar 1 2019 mv + lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 22416 Mar 1 2019 pwd + lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash + -rwxr-xr-x 1 root root 26504 Mar 1 2019 readlink + -rwxr-xr-x 1 root root 42968 Mar 1 2019 rm + -rwxr-xr-x 1 root root 26496 Mar 1 2019 rmdir + -rwxr-xr-x 1 root root 14136 Jan 22 2019 run-parts + -rwxr-xr-x 1 root root 76012 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 May 31 12:03 sh -> bash + lrwxrwxrwx 1 root root 4 May 30 22:30 sh.distrib -> dash + -rwxr-xr-x 1 root root 22384 Mar 1 2019 sleep + -rwxr-xr-x 1 root root 51124 Mar 1 2019 stty + -rwsr-xr-x 1 root root 42472 Jan 10 2019 su + -rwxr-xr-x 1 root root 22392 Mar 1 2019 sync + -rwxr-xr-x 1 root root 283324 Apr 24 2019 tar + -rwxr-xr-x 1 root root 9808 Jan 22 2019 tempfile + -rwxr-xr-x 1 root root 63464 Mar 1 2019 touch + -rwxr-xr-x 1 root root 18260 Mar 1 2019 true + -rwxr-xr-x 1 root root 9636 Apr 23 09:38 ulockmgr_server + -rwsr-xr-x 1 root root 21976 Jan 10 2019 umount + -rwxr-xr-x 1 root root 22380 Mar 1 2019 uname + -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress + -rwxr-xr-x 1 root root 88444 Mar 1 2019 vdir + -rwxr-xr-x 1 root root 21980 Jan 10 2019 wdctl + -rwxr-xr-x 1 root root 946 Jan 22 2019 which + lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat + -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp + -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff + -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep + -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep + -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce + -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep + -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless + -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore + -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew +I: user script /srv/workspace/pbuilder/30594/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -268,7 +302,7 @@ Get: 60 http://deb.debian.org/debian buster/main armhf python-dev armhf 2.7.16-1 [1192 B] Get: 61 http://deb.debian.org/debian buster/main armhf python-all-dev armhf 2.7.16-1 [1068 B] Get: 62 http://deb.debian.org/debian buster/main armhf zip armhf 3.0-11+b1 [228 kB] -Fetched 57.2 MB in 5s (11.0 MB/s) +Fetched 57.2 MB in 45s (1277 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18932 files and directories currently installed.) @@ -541,7 +575,7 @@ fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/cain-1.10+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/cain-1.10+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package cain dpkg-buildpackage: info: source version 1.10+dfsg-3 dpkg-buildpackage: info: source distribution unstable @@ -553,7 +587,7 @@ debian/rules override_dh_auto_clean make[1]: Entering directory '/build/cain-1.10+dfsg' dh_auto_clean - make -j3 distclean + make -j2 distclean make[2]: Entering directory '/build/cain-1.10+dfsg' rm -f *~ *.pyc */*.pyc rm -rf Cain @@ -578,40 +612,34 @@ make[1]: Entering directory '/build/cain-1.10+dfsg' mkdir solvers dh_auto_build - make -j3 "INSTALL=install --strip-program=true" + make -j2 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/cain-1.10+dfsg' make -C src/solvers make[3]: Entering directory '/build/cain-1.10+dfsg/src/solvers' -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingRungeKutta4.cc > HomogeneousTauLeapingRungeKutta4.d.$$; \ - sed 's,\(HomogeneousTauLeapingRungeKutta4\)\.o[ :]*,\1.o HomogeneousTauLeapingRungeKutta4.d : ,g' < HomogeneousTauLeapingRungeKutta4.d.$$ > HomogeneousTauLeapingRungeKutta4.d; \ - rm -f HomogeneousTauLeapingRungeKutta4.d.$$ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingImplicitFixedEuler.cc > HomogeneousTauLeapingImplicitFixedEuler.d.$$; \ - sed 's,\(HomogeneousTauLeapingImplicitFixedEuler\)\.o[ :]*,\1.o HomogeneousTauLeapingImplicitFixedEuler.d : ,g' < HomogeneousTauLeapingImplicitFixedEuler.d.$$ > HomogeneousTauLeapingImplicitFixedEuler.d; \ - rm -f HomogeneousTauLeapingImplicitFixedEuler.d.$$ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionHashingVector.cc > HomogeneousNextReactionHashingVector.d.$$; \ + sed 's,\(HomogeneousNextReactionHashingVector\)\.o[ :]*,\1.o HomogeneousNextReactionHashingVector.d : ,g' < HomogeneousNextReactionHashingVector.d.$$ > HomogeneousNextReactionHashingVector.d; \ + rm -f HomogeneousNextReactionHashingVector.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionBinaryHeapGibsonBruck.cc > HomogeneousNextReactionBinaryHeapGibsonBruck.d.$$; \ sed 's,\(HomogeneousNextReactionBinaryHeapGibsonBruck\)\.o[ :]*,\1.o HomogeneousNextReactionBinaryHeapGibsonBruck.d : ,g' < HomogeneousNextReactionBinaryHeapGibsonBruck.d.$$ > HomogeneousNextReactionBinaryHeapGibsonBruck.d; \ rm -f HomogeneousNextReactionBinaryHeapGibsonBruck.d.$$ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsDirect2DSearch.cc > HomogeneousHistogramsDirect2DSearch.d.$$; \ + sed 's,\(HomogeneousHistogramsDirect2DSearch\)\.o[ :]*,\1.o HomogeneousHistogramsDirect2DSearch.d : ,g' < HomogeneousHistogramsDirect2DSearch.d.$$ > HomogeneousHistogramsDirect2DSearch.d; \ + rm -f HomogeneousHistogramsDirect2DSearch.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit.cc > HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit.d.$$; \ sed 's,\(HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit\)\.o[ :]*,\1.o HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit.d : ,g' < HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit.d.$$ > HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit.d; \ rm -f HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousDirect2DSearchSorted.cc > HomogeneousDirect2DSearchSorted.d.$$; \ sed 's,\(HomogeneousDirect2DSearchSorted\)\.o[ :]*,\1.o HomogeneousDirect2DSearchSorted.d : ,g' < HomogeneousDirect2DSearchSorted.d.$$ > HomogeneousDirect2DSearchSorted.d; \ rm -f HomogeneousDirect2DSearchSorted.d.$$ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsMultiTimeDirect2DSearch.cc > HomogeneousHistogramsMultiTimeDirect2DSearch.d.$$; \ - sed 's,\(HomogeneousHistogramsMultiTimeDirect2DSearch\)\.o[ :]*,\1.o HomogeneousHistogramsMultiTimeDirect2DSearch.d : ,g' < HomogeneousHistogramsMultiTimeDirect2DSearch.d.$$ > HomogeneousHistogramsMultiTimeDirect2DSearch.d; \ - rm -f HomogeneousHistogramsMultiTimeDirect2DSearch.d.$$ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousDirectRejectionBinsSplitting.cc > HomogeneousDirectRejectionBinsSplitting.d.$$; \ - sed 's,\(HomogeneousDirectRejectionBinsSplitting\)\.o[ :]*,\1.o HomogeneousDirectRejectionBinsSplitting.d : ,g' < HomogeneousDirectRejectionBinsSplitting.d.$$ > HomogeneousDirectRejectionBinsSplitting.d; \ - rm -f HomogeneousDirectRejectionBinsSplitting.d.$$ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousTrajectoryTreeFull.cc > HomogeneousTrajectoryTreeFull.d.$$; \ - sed 's,\(HomogeneousTrajectoryTreeFull\)\.o[ :]*,\1.o HomogeneousTrajectoryTreeFull.d : ,g' < HomogeneousTrajectoryTreeFull.d.$$ > HomogeneousTrajectoryTreeFull.d; \ - rm -f HomogeneousTrajectoryTreeFull.d.$$ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionPartitionPropensities.cc > HomogeneousNextReactionPartitionPropensities.d.$$; \ - sed 's,\(HomogeneousNextReactionPartitionPropensities\)\.o[ :]*,\1.o HomogeneousNextReactionPartitionPropensities.d : ,g' < HomogeneousNextReactionPartitionPropensities.d.$$ > HomogeneousNextReactionPartitionPropensities.d; \ - rm -f HomogeneousNextReactionPartitionPropensities.d.$$ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionHashingGenericVector.cc > HomogeneousNextReactionHashingGenericVector.d.$$; \ - sed 's,\(HomogeneousNextReactionHashingGenericVector\)\.o[ :]*,\1.o HomogeneousNextReactionHashingGenericVector.d : ,g' < HomogeneousNextReactionHashingGenericVector.d.$$ > HomogeneousNextReactionHashingGenericVector.d; \ - rm -f HomogeneousNextReactionHashingGenericVector.d.$$ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingMidpoint.cc > HomogeneousTauLeapingMidpoint.d.$$; \ + sed 's,\(HomogeneousTauLeapingMidpoint\)\.o[ :]*,\1.o HomogeneousTauLeapingMidpoint.d : ,g' < HomogeneousTauLeapingMidpoint.d.$$ > HomogeneousTauLeapingMidpoint.d; \ + rm -f HomogeneousTauLeapingMidpoint.d.$$ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionBinaryHeapPointer.cc > HomogeneousNextReactionBinaryHeapPointer.d.$$; \ + sed 's,\(HomogeneousNextReactionBinaryHeapPointer\)\.o[ :]*,\1.o HomogeneousNextReactionBinaryHeapPointer.d : ,g' < HomogeneousNextReactionBinaryHeapPointer.d.$$ > HomogeneousNextReactionBinaryHeapPointer.d; \ + rm -f HomogeneousNextReactionBinaryHeapPointer.d.$$ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsTransientDirectTreeExponentialLast.cc > HomogeneousHistogramsTransientDirectTreeExponentialLast.d.$$; \ + sed 's,\(HomogeneousHistogramsTransientDirectTreeExponentialLast\)\.o[ :]*,\1.o HomogeneousHistogramsTransientDirectTreeExponentialLast.d : ,g' < HomogeneousHistogramsTransientDirectTreeExponentialLast.d.$$ > HomogeneousHistogramsTransientDirectTreeExponentialLast.d; \ + rm -f HomogeneousHistogramsTransientDirectTreeExponentialLast.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingSalFixedLinear.cc > HomogeneousTauLeapingSalFixedLinear.d.$$; \ sed 's,\(HomogeneousTauLeapingSalFixedLinear\)\.o[ :]*,\1.o HomogeneousTauLeapingSalFixedLinear.d : ,g' < HomogeneousTauLeapingSalFixedLinear.d.$$ > HomogeneousTauLeapingSalFixedLinear.d; \ rm -f HomogeneousTauLeapingSalFixedLinear.d.$$ @@ -624,15 +652,9 @@ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingFixedForward.cc > HomogeneousTauLeapingFixedForward.d.$$; \ sed 's,\(HomogeneousTauLeapingFixedForward\)\.o[ :]*,\1.o HomogeneousTauLeapingFixedForward.d : ,g' < HomogeneousTauLeapingFixedForward.d.$$ > HomogeneousTauLeapingFixedForward.d; \ rm -f HomogeneousTauLeapingFixedForward.d.$$ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousDirectLinearSearchDelayedUpdate.cc > HomogeneousDirectLinearSearchDelayedUpdate.d.$$; \ - sed 's,\(HomogeneousDirectLinearSearchDelayedUpdate\)\.o[ :]*,\1.o HomogeneousDirectLinearSearchDelayedUpdate.d : ,g' < HomogeneousDirectLinearSearchDelayedUpdate.d.$$ > HomogeneousDirectLinearSearchDelayedUpdate.d; \ - rm -f HomogeneousDirectLinearSearchDelayedUpdate.d.$$ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionHashing.cc > HomogeneousNextReactionHashing.d.$$; \ - sed 's,\(HomogeneousNextReactionHashing\)\.o[ :]*,\1.o HomogeneousNextReactionHashing.d : ,g' < HomogeneousNextReactionHashing.d.$$ > HomogeneousNextReactionHashing.d; \ - rm -f HomogeneousNextReactionHashing.d.$$ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsAverageElapsedTime.cc > HomogeneousHistogramsAverageElapsedTime.d.$$; \ - sed 's,\(HomogeneousHistogramsAverageElapsedTime\)\.o[ :]*,\1.o HomogeneousHistogramsAverageElapsedTime.d : ,g' < HomogeneousHistogramsAverageElapsedTime.d.$$ > HomogeneousHistogramsAverageElapsedTime.d; \ - rm -f HomogeneousHistogramsAverageElapsedTime.d.$$ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingForward.cc > HomogeneousTauLeapingForward.d.$$; \ + sed 's,\(HomogeneousTauLeapingForward\)\.o[ :]*,\1.o HomogeneousTauLeapingForward.d : ,g' < HomogeneousTauLeapingForward.d.$$ > HomogeneousTauLeapingForward.d; \ + rm -f HomogeneousTauLeapingForward.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousDirectLinearSearchBubbleSort.cc > HomogeneousDirectLinearSearchBubbleSort.d.$$; \ sed 's,\(HomogeneousDirectLinearSearchBubbleSort\)\.o[ :]*,\1.o HomogeneousDirectLinearSearchBubbleSort.d : ,g' < HomogeneousDirectLinearSearchBubbleSort.d.$$ > HomogeneousDirectLinearSearchBubbleSort.d; \ rm -f HomogeneousDirectLinearSearchBubbleSort.d.$$ @@ -642,21 +664,30 @@ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingMidpointNoCorrection.cc > HomogeneousTauLeapingMidpointNoCorrection.d.$$; \ sed 's,\(HomogeneousTauLeapingMidpointNoCorrection\)\.o[ :]*,\1.o HomogeneousTauLeapingMidpointNoCorrection.d : ,g' < HomogeneousTauLeapingMidpointNoCorrection.d.$$ > HomogeneousTauLeapingMidpointNoCorrection.d; \ rm -f HomogeneousTauLeapingMidpointNoCorrection.d.$$ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingSalLinear.cc > HomogeneousTauLeapingSalLinear.d.$$; \ - sed 's,\(HomogeneousTauLeapingSalLinear\)\.o[ :]*,\1.o HomogeneousTauLeapingSalLinear.d : ,g' < HomogeneousTauLeapingSalLinear.d.$$ > HomogeneousTauLeapingSalLinear.d; \ - rm -f HomogeneousTauLeapingSalLinear.d.$$ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingFixedMidpoint.cc > HomogeneousTauLeapingFixedMidpoint.d.$$; \ + sed 's,\(HomogeneousTauLeapingFixedMidpoint\)\.o[ :]*,\1.o HomogeneousTauLeapingFixedMidpoint.d : ,g' < HomogeneousTauLeapingFixedMidpoint.d.$$ > HomogeneousTauLeapingFixedMidpoint.d; \ + rm -f HomogeneousTauLeapingFixedMidpoint.d.$$ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionPartitionSizeAdaptive.cc > HomogeneousNextReactionPartitionSizeAdaptive.d.$$; \ + sed 's,\(HomogeneousNextReactionPartitionSizeAdaptive\)\.o[ :]*,\1.o HomogeneousNextReactionPartitionSizeAdaptive.d : ,g' < HomogeneousNextReactionPartitionSizeAdaptive.d.$$ > HomogeneousNextReactionPartitionSizeAdaptive.d; \ + rm -f HomogeneousNextReactionPartitionSizeAdaptive.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousDirectCompositionRejection.cc > HomogeneousDirectCompositionRejection.d.$$; \ sed 's,\(HomogeneousDirectCompositionRejection\)\.o[ :]*,\1.o HomogeneousDirectCompositionRejection.d : ,g' < HomogeneousDirectCompositionRejection.d.$$ > HomogeneousDirectCompositionRejection.d; \ rm -f HomogeneousDirectCompositionRejection.d.$$ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousOdeReactionFixedRungeKuttaCashKarp.cc > HomogeneousOdeReactionFixedRungeKuttaCashKarp.d.$$; \ - sed 's,\(HomogeneousOdeReactionFixedRungeKuttaCashKarp\)\.o[ :]*,\1.o HomogeneousOdeReactionFixedRungeKuttaCashKarp.d : ,g' < HomogeneousOdeReactionFixedRungeKuttaCashKarp.d.$$ > HomogeneousOdeReactionFixedRungeKuttaCashKarp.d; \ - rm -f HomogeneousOdeReactionFixedRungeKuttaCashKarp.d.$$ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsDirect2DSearch.cc > HomogeneousHistogramsDirect2DSearch.d.$$; \ - sed 's,\(HomogeneousHistogramsDirect2DSearch\)\.o[ :]*,\1.o HomogeneousHistogramsDirect2DSearch.d : ,g' < HomogeneousHistogramsDirect2DSearch.d.$$ > HomogeneousHistogramsDirect2DSearch.d; \ - rm -f HomogeneousHistogramsDirect2DSearch.d.$$ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousOdeReactionFixedRungeKutta4.cc > HomogeneousOdeReactionFixedRungeKutta4.d.$$; \ + sed 's,\(HomogeneousOdeReactionFixedRungeKutta4\)\.o[ :]*,\1.o HomogeneousOdeReactionFixedRungeKutta4.d : ,g' < HomogeneousOdeReactionFixedRungeKutta4.d.$$ > HomogeneousOdeReactionFixedRungeKutta4.d; \ + rm -f HomogeneousOdeReactionFixedRungeKutta4.d.$$ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsDirectTree.cc > HomogeneousHistogramsDirectTree.d.$$; \ + sed 's,\(HomogeneousHistogramsDirectTree\)\.o[ :]*,\1.o HomogeneousHistogramsDirectTree.d : ,g' < HomogeneousHistogramsDirectTree.d.$$ > HomogeneousHistogramsDirectTree.d; \ + rm -f HomogeneousHistogramsDirectTree.d.$$ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousOdeReactionRungeKuttaCashKarp.cc > HomogeneousOdeReactionRungeKuttaCashKarp.d.$$; \ + sed 's,\(HomogeneousOdeReactionRungeKuttaCashKarp\)\.o[ :]*,\1.o HomogeneousOdeReactionRungeKuttaCashKarp.d : ,g' < HomogeneousOdeReactionRungeKuttaCashKarp.d.$$ > HomogeneousOdeReactionRungeKuttaCashKarp.d; \ + rm -f HomogeneousOdeReactionRungeKuttaCashKarp.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsAverage.cc > HomogeneousHistogramsAverage.d.$$; \ sed 's,\(HomogeneousHistogramsAverage\)\.o[ :]*,\1.o HomogeneousHistogramsAverage.d : ,g' < HomogeneousHistogramsAverage.d.$$ > HomogeneousHistogramsAverage.d; \ rm -f HomogeneousHistogramsAverage.d.$$ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingSalLinear.cc > HomogeneousTauLeapingSalLinear.d.$$; \ + sed 's,\(HomogeneousTauLeapingSalLinear\)\.o[ :]*,\1.o HomogeneousTauLeapingSalLinear.d : ,g' < HomogeneousTauLeapingSalLinear.d.$$ > HomogeneousTauLeapingSalLinear.d; \ + rm -f HomogeneousTauLeapingSalLinear.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousHistogramFinalHypoexponentialDirect2DSearch.cc > HomogeneousHistogramFinalHypoexponentialDirect2DSearch.d.$$; \ sed 's,\(HomogeneousHistogramFinalHypoexponentialDirect2DSearch\)\.o[ :]*,\1.o HomogeneousHistogramFinalHypoexponentialDirect2DSearch.d : ,g' < HomogeneousHistogramFinalHypoexponentialDirect2DSearch.d.$$ > HomogeneousHistogramFinalHypoexponentialDirect2DSearch.d; \ rm -f HomogeneousHistogramFinalHypoexponentialDirect2DSearch.d.$$ @@ -666,60 +697,63 @@ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousFirstReactionInfluence.cc > HomogeneousFirstReactionInfluence.d.$$; \ sed 's,\(HomogeneousFirstReactionInfluence\)\.o[ :]*,\1.o HomogeneousFirstReactionInfluence.d : ,g' < HomogeneousFirstReactionInfluence.d.$$ > HomogeneousFirstReactionInfluence.d; \ rm -f HomogeneousFirstReactionInfluence.d.$$ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousOdeReactionRungeKuttaCashKarp.cc > HomogeneousOdeReactionRungeKuttaCashKarp.d.$$; \ - sed 's,\(HomogeneousOdeReactionRungeKuttaCashKarp\)\.o[ :]*,\1.o HomogeneousOdeReactionRungeKuttaCashKarp.d : ,g' < HomogeneousOdeReactionRungeKuttaCashKarp.d.$$ > HomogeneousOdeReactionRungeKuttaCashKarp.d; \ - rm -f HomogeneousOdeReactionRungeKuttaCashKarp.d.$$ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionHashingGenericVector.cc > HomogeneousNextReactionHashingGenericVector.d.$$; \ + sed 's,\(HomogeneousNextReactionHashingGenericVector\)\.o[ :]*,\1.o HomogeneousNextReactionHashingGenericVector.d : ,g' < HomogeneousNextReactionHashingGenericVector.d.$$ > HomogeneousNextReactionHashingGenericVector.d; \ + rm -f HomogeneousNextReactionHashingGenericVector.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsAverageAps.cc > HomogeneousHistogramsAverageAps.d.$$; \ sed 's,\(HomogeneousHistogramsAverageAps\)\.o[ :]*,\1.o HomogeneousHistogramsAverageAps.d : ,g' < HomogeneousHistogramsAverageAps.d.$$ > HomogeneousHistogramsAverageAps.d; \ rm -f HomogeneousHistogramsAverageAps.d.$$ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousDirectBinarySearchRecursiveCdf.cc > HomogeneousDirectBinarySearchRecursiveCdf.d.$$; \ - sed 's,\(HomogeneousDirectBinarySearchRecursiveCdf\)\.o[ :]*,\1.o HomogeneousDirectBinarySearchRecursiveCdf.d : ,g' < HomogeneousDirectBinarySearchRecursiveCdf.d.$$ > HomogeneousDirectBinarySearchRecursiveCdf.d; \ - rm -f HomogeneousDirectBinarySearchRecursiveCdf.d.$$ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousOdeReactionFixedRungeKutta4.cc > HomogeneousOdeReactionFixedRungeKutta4.d.$$; \ - sed 's,\(HomogeneousOdeReactionFixedRungeKutta4\)\.o[ :]*,\1.o HomogeneousOdeReactionFixedRungeKutta4.d : ,g' < HomogeneousOdeReactionFixedRungeKutta4.d.$$ > HomogeneousOdeReactionFixedRungeKutta4.d; \ - rm -f HomogeneousOdeReactionFixedRungeKutta4.d.$$ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingForward.cc > HomogeneousTauLeapingForward.d.$$; \ - sed 's,\(HomogeneousTauLeapingForward\)\.o[ :]*,\1.o HomogeneousTauLeapingForward.d : ,g' < HomogeneousTauLeapingForward.d.$$ > HomogeneousTauLeapingForward.d; \ - rm -f HomogeneousTauLeapingForward.d.$$ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionBinaryHeapPointer.cc > HomogeneousNextReactionBinaryHeapPointer.d.$$; \ - sed 's,\(HomogeneousNextReactionBinaryHeapPointer\)\.o[ :]*,\1.o HomogeneousNextReactionBinaryHeapPointer.d : ,g' < HomogeneousNextReactionBinaryHeapPointer.d.$$ > HomogeneousNextReactionBinaryHeapPointer.d; \ - rm -f HomogeneousNextReactionBinaryHeapPointer.d.$$ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionLinearSearch.cc > HomogeneousNextReactionLinearSearch.d.$$; \ + sed 's,\(HomogeneousNextReactionLinearSearch\)\.o[ :]*,\1.o HomogeneousNextReactionLinearSearch.d : ,g' < HomogeneousNextReactionLinearSearch.d.$$ > HomogeneousNextReactionLinearSearch.d; \ + rm -f HomogeneousNextReactionLinearSearch.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousDirect2DSearchBubbleSort.cc > HomogeneousDirect2DSearchBubbleSort.d.$$; \ sed 's,\(HomogeneousDirect2DSearchBubbleSort\)\.o[ :]*,\1.o HomogeneousDirect2DSearchBubbleSort.d : ,g' < HomogeneousDirect2DSearchBubbleSort.d.$$ > HomogeneousDirect2DSearchBubbleSort.d; \ rm -f HomogeneousDirect2DSearchBubbleSort.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousDirectLinearSearchSorted.cc > HomogeneousDirectLinearSearchSorted.d.$$; \ sed 's,\(HomogeneousDirectLinearSearchSorted\)\.o[ :]*,\1.o HomogeneousDirectLinearSearchSorted.d : ,g' < HomogeneousDirectLinearSearchSorted.d.$$ > HomogeneousDirectLinearSearchSorted.d; \ rm -f HomogeneousDirectLinearSearchSorted.d.$$ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsTransientDirectTreeExponentialLast.cc > HomogeneousHistogramsTransientDirectTreeExponentialLast.d.$$; \ - sed 's,\(HomogeneousHistogramsTransientDirectTreeExponentialLast\)\.o[ :]*,\1.o HomogeneousHistogramsTransientDirectTreeExponentialLast.d : ,g' < HomogeneousHistogramsTransientDirectTreeExponentialLast.d.$$ > HomogeneousHistogramsTransientDirectTreeExponentialLast.d; \ - rm -f HomogeneousHistogramsTransientDirectTreeExponentialLast.d.$$ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsMultiTimeDirect2DSearch.cc > HomogeneousHistogramsMultiTimeDirect2DSearch.d.$$; \ + sed 's,\(HomogeneousHistogramsMultiTimeDirect2DSearch\)\.o[ :]*,\1.o HomogeneousHistogramsMultiTimeDirect2DSearch.d : ,g' < HomogeneousHistogramsMultiTimeDirect2DSearch.d.$$ > HomogeneousHistogramsMultiTimeDirect2DSearch.d; \ + rm -f HomogeneousHistogramsMultiTimeDirect2DSearch.d.$$ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousFirstReaction.cc > HomogeneousFirstReaction.d.$$; \ + sed 's,\(HomogeneousFirstReaction\)\.o[ :]*,\1.o HomogeneousFirstReaction.d : ,g' < HomogeneousFirstReaction.d.$$ > HomogeneousFirstReaction.d; \ + rm -f HomogeneousFirstReaction.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionLinearSearchUnrolled.cc > HomogeneousNextReactionLinearSearchUnrolled.d.$$; \ sed 's,\(HomogeneousNextReactionLinearSearchUnrolled\)\.o[ :]*,\1.o HomogeneousNextReactionLinearSearchUnrolled.d : ,g' < HomogeneousNextReactionLinearSearchUnrolled.d.$$ > HomogeneousNextReactionLinearSearchUnrolled.d; \ rm -f HomogeneousNextReactionLinearSearchUnrolled.d.$$ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousDirectBinarySearchSorted.cc > HomogeneousDirectBinarySearchSorted.d.$$; \ - sed 's,\(HomogeneousDirectBinarySearchSorted\)\.o[ :]*,\1.o HomogeneousDirectBinarySearchSorted.d : ,g' < HomogeneousDirectBinarySearchSorted.d.$$ > HomogeneousDirectBinarySearchSorted.d; \ - rm -f HomogeneousDirectBinarySearchSorted.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousHybridDirectTauLeapingForward.cc > HomogeneousHybridDirectTauLeapingForward.d.$$; \ sed 's,\(HomogeneousHybridDirectTauLeapingForward\)\.o[ :]*,\1.o HomogeneousHybridDirectTauLeapingForward.d : ,g' < HomogeneousHybridDirectTauLeapingForward.d.$$ > HomogeneousHybridDirectTauLeapingForward.d; \ rm -f HomogeneousHybridDirectTauLeapingForward.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousDirect2DSearch.cc > HomogeneousDirect2DSearch.d.$$; \ sed 's,\(HomogeneousDirect2DSearch\)\.o[ :]*,\1.o HomogeneousDirect2DSearch.d : ,g' < HomogeneousDirect2DSearch.d.$$ > HomogeneousDirect2DSearch.d; \ rm -f HomogeneousDirect2DSearch.d.$$ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsDirectTree.cc > HomogeneousHistogramsDirectTree.d.$$; \ - sed 's,\(HomogeneousHistogramsDirectTree\)\.o[ :]*,\1.o HomogeneousHistogramsDirectTree.d : ,g' < HomogeneousHistogramsDirectTree.d.$$ > HomogeneousHistogramsDirectTree.d; \ - rm -f HomogeneousHistogramsDirectTree.d.$$ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionLinearSearch.cc > HomogeneousNextReactionLinearSearch.d.$$; \ - sed 's,\(HomogeneousNextReactionLinearSearch\)\.o[ :]*,\1.o HomogeneousNextReactionLinearSearch.d : ,g' < HomogeneousNextReactionLinearSearch.d.$$ > HomogeneousNextReactionLinearSearch.d; \ - rm -f HomogeneousNextReactionLinearSearch.d.$$ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsAverageElapsedTime.cc > HomogeneousHistogramsAverageElapsedTime.d.$$; \ + sed 's,\(HomogeneousHistogramsAverageElapsedTime\)\.o[ :]*,\1.o HomogeneousHistogramsAverageElapsedTime.d : ,g' < HomogeneousHistogramsAverageElapsedTime.d.$$ > HomogeneousHistogramsAverageElapsedTime.d; \ + rm -f HomogeneousHistogramsAverageElapsedTime.d.$$ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousDirectLinearSearchDelayedUpdate.cc > HomogeneousDirectLinearSearchDelayedUpdate.d.$$; \ + sed 's,\(HomogeneousDirectLinearSearchDelayedUpdate\)\.o[ :]*,\1.o HomogeneousDirectLinearSearchDelayedUpdate.d : ,g' < HomogeneousDirectLinearSearchDelayedUpdate.d.$$ > HomogeneousDirectLinearSearchDelayedUpdate.d; \ + rm -f HomogeneousDirectLinearSearchDelayedUpdate.d.$$ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousTrajectoryTreeFull.cc > HomogeneousTrajectoryTreeFull.d.$$; \ + sed 's,\(HomogeneousTrajectoryTreeFull\)\.o[ :]*,\1.o HomogeneousTrajectoryTreeFull.d : ,g' < HomogeneousTrajectoryTreeFull.d.$$ > HomogeneousTrajectoryTreeFull.d; \ + rm -f HomogeneousTrajectoryTreeFull.d.$$ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousOdeReactionFixedRungeKuttaCashKarp.cc > HomogeneousOdeReactionFixedRungeKuttaCashKarp.d.$$; \ + sed 's,\(HomogeneousOdeReactionFixedRungeKuttaCashKarp\)\.o[ :]*,\1.o HomogeneousOdeReactionFixedRungeKuttaCashKarp.d : ,g' < HomogeneousOdeReactionFixedRungeKuttaCashKarp.d.$$ > HomogeneousOdeReactionFixedRungeKuttaCashKarp.d; \ + rm -f HomogeneousOdeReactionFixedRungeKuttaCashKarp.d.$$ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousDirectRejectionBinsSplitting.cc > HomogeneousDirectRejectionBinsSplitting.d.$$; \ + sed 's,\(HomogeneousDirectRejectionBinsSplitting\)\.o[ :]*,\1.o HomogeneousDirectRejectionBinsSplitting.d : ,g' < HomogeneousDirectRejectionBinsSplitting.d.$$ > HomogeneousDirectRejectionBinsSplitting.d; \ + rm -f HomogeneousDirectRejectionBinsSplitting.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionPartitionFixedSize.cc > HomogeneousNextReactionPartitionFixedSize.d.$$; \ sed 's,\(HomogeneousNextReactionPartitionFixedSize\)\.o[ :]*,\1.o HomogeneousNextReactionPartitionFixedSize.d : ,g' < HomogeneousNextReactionPartitionFixedSize.d.$$ > HomogeneousNextReactionPartitionFixedSize.d; \ rm -f HomogeneousNextReactionPartitionFixedSize.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingForwardNoCorrection.cc > HomogeneousTauLeapingForwardNoCorrection.d.$$; \ sed 's,\(HomogeneousTauLeapingForwardNoCorrection\)\.o[ :]*,\1.o HomogeneousTauLeapingForwardNoCorrection.d : ,g' < HomogeneousTauLeapingForwardNoCorrection.d.$$ > HomogeneousTauLeapingForwardNoCorrection.d; \ rm -f HomogeneousTauLeapingForwardNoCorrection.d.$$ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionPartitionSizeAdaptive.cc > HomogeneousNextReactionPartitionSizeAdaptive.d.$$; \ - sed 's,\(HomogeneousNextReactionPartitionSizeAdaptive\)\.o[ :]*,\1.o HomogeneousNextReactionPartitionSizeAdaptive.d : ,g' < HomogeneousNextReactionPartitionSizeAdaptive.d.$$ > HomogeneousNextReactionPartitionSizeAdaptive.d; \ - rm -f HomogeneousNextReactionPartitionSizeAdaptive.d.$$ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousDirectBinarySearchRecursiveCdf.cc > HomogeneousDirectBinarySearchRecursiveCdf.d.$$; \ + sed 's,\(HomogeneousDirectBinarySearchRecursiveCdf\)\.o[ :]*,\1.o HomogeneousDirectBinarySearchRecursiveCdf.d : ,g' < HomogeneousDirectBinarySearchRecursiveCdf.d.$$ > HomogeneousDirectBinarySearchRecursiveCdf.d; \ + rm -f HomogeneousDirectBinarySearchRecursiveCdf.d.$$ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingRungeKutta4.cc > HomogeneousTauLeapingRungeKutta4.d.$$; \ + sed 's,\(HomogeneousTauLeapingRungeKutta4\)\.o[ :]*,\1.o HomogeneousTauLeapingRungeKutta4.d : ,g' < HomogeneousTauLeapingRungeKutta4.d.$$ > HomogeneousTauLeapingRungeKutta4.d; \ + rm -f HomogeneousTauLeapingRungeKutta4.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousDirectLinearSearch.cc > HomogeneousDirectLinearSearch.d.$$; \ sed 's,\(HomogeneousDirectLinearSearch\)\.o[ :]*,\1.o HomogeneousDirectLinearSearch.d : ,g' < HomogeneousDirectLinearSearch.d.$$ > HomogeneousDirectLinearSearch.d; \ rm -f HomogeneousDirectLinearSearch.d.$$ @@ -732,95 +766,119 @@ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionPartitionCostAdaptive.cc > HomogeneousNextReactionPartitionCostAdaptive.d.$$; \ sed 's,\(HomogeneousNextReactionPartitionCostAdaptive\)\.o[ :]*,\1.o HomogeneousNextReactionPartitionCostAdaptive.d : ,g' < HomogeneousNextReactionPartitionCostAdaptive.d.$$ > HomogeneousNextReactionPartitionCostAdaptive.d; \ rm -f HomogeneousNextReactionPartitionCostAdaptive.d.$$ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsTransientDirectTreeNormalApproximation.cc > HomogeneousHistogramsTransientDirectTreeNormalApproximation.d.$$; \ + sed 's,\(HomogeneousHistogramsTransientDirectTreeNormalApproximation\)\.o[ :]*,\1.o HomogeneousHistogramsTransientDirectTreeNormalApproximation.d : ,g' < HomogeneousHistogramsTransientDirectTreeNormalApproximation.d.$$ > HomogeneousHistogramsTransientDirectTreeNormalApproximation.d; \ + rm -f HomogeneousHistogramsTransientDirectTreeNormalApproximation.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousHybridDirectTauLeapingRungeKutta4.cc > HomogeneousHybridDirectTauLeapingRungeKutta4.d.$$; \ sed 's,\(HomogeneousHybridDirectTauLeapingRungeKutta4\)\.o[ :]*,\1.o HomogeneousHybridDirectTauLeapingRungeKutta4.d : ,g' < HomogeneousHybridDirectTauLeapingRungeKutta4.d.$$ > HomogeneousHybridDirectTauLeapingRungeKutta4.d; \ rm -f HomogeneousHybridDirectTauLeapingRungeKutta4.d.$$ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousFirstReaction.cc > HomogeneousFirstReaction.d.$$; \ - sed 's,\(HomogeneousFirstReaction\)\.o[ :]*,\1.o HomogeneousFirstReaction.d : ,g' < HomogeneousFirstReaction.d.$$ > HomogeneousFirstReaction.d; \ - rm -f HomogeneousFirstReaction.d.$$ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionPartitionPropensities.cc > HomogeneousNextReactionPartitionPropensities.d.$$; \ + sed 's,\(HomogeneousNextReactionPartitionPropensities\)\.o[ :]*,\1.o HomogeneousNextReactionPartitionPropensities.d : ,g' < HomogeneousNextReactionPartitionPropensities.d.$$ > HomogeneousNextReactionPartitionPropensities.d; \ + rm -f HomogeneousNextReactionPartitionPropensities.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsTransientDirectTreeExponentialLimit.cc > HomogeneousHistogramsTransientDirectTreeExponentialLimit.d.$$; \ sed 's,\(HomogeneousHistogramsTransientDirectTreeExponentialLimit\)\.o[ :]*,\1.o HomogeneousHistogramsTransientDirectTreeExponentialLimit.d : ,g' < HomogeneousHistogramsTransientDirectTreeExponentialLimit.d.$$ > HomogeneousHistogramsTransientDirectTreeExponentialLimit.d; \ rm -f HomogeneousHistogramsTransientDirectTreeExponentialLimit.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingRungeKutta4NoCorrection.cc > HomogeneousTauLeapingRungeKutta4NoCorrection.d.$$; \ sed 's,\(HomogeneousTauLeapingRungeKutta4NoCorrection\)\.o[ :]*,\1.o HomogeneousTauLeapingRungeKutta4NoCorrection.d : ,g' < HomogeneousTauLeapingRungeKutta4NoCorrection.d.$$ > HomogeneousTauLeapingRungeKutta4NoCorrection.d; \ rm -f HomogeneousTauLeapingRungeKutta4NoCorrection.d.$$ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionHashingVector.cc > HomogeneousNextReactionHashingVector.d.$$; \ - sed 's,\(HomogeneousNextReactionHashingVector\)\.o[ :]*,\1.o HomogeneousNextReactionHashingVector.d : ,g' < HomogeneousNextReactionHashingVector.d.$$ > HomogeneousNextReactionHashingVector.d; \ - rm -f HomogeneousNextReactionHashingVector.d.$$ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingMidpoint.cc > HomogeneousTauLeapingMidpoint.d.$$; \ - sed 's,\(HomogeneousTauLeapingMidpoint\)\.o[ :]*,\1.o HomogeneousTauLeapingMidpoint.d : ,g' < HomogeneousTauLeapingMidpoint.d.$$ > HomogeneousTauLeapingMidpoint.d; \ - rm -f HomogeneousTauLeapingMidpoint.d.$$ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousOdeReactionFixedMidpoint.cc > HomogeneousOdeReactionFixedMidpoint.d.$$; \ + sed 's,\(HomogeneousOdeReactionFixedMidpoint\)\.o[ :]*,\1.o HomogeneousOdeReactionFixedMidpoint.d : ,g' < HomogeneousOdeReactionFixedMidpoint.d.$$ > HomogeneousOdeReactionFixedMidpoint.d; \ + rm -f HomogeneousOdeReactionFixedMidpoint.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionHashingGenericList.cc > HomogeneousNextReactionHashingGenericList.d.$$; \ sed 's,\(HomogeneousNextReactionHashingGenericList\)\.o[ :]*,\1.o HomogeneousNextReactionHashingGenericList.d : ,g' < HomogeneousNextReactionHashingGenericList.d.$$ > HomogeneousNextReactionHashingGenericList.d; \ rm -f HomogeneousNextReactionHashingGenericList.d.$$ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingFixedMidpoint.cc > HomogeneousTauLeapingFixedMidpoint.d.$$; \ - sed 's,\(HomogeneousTauLeapingFixedMidpoint\)\.o[ :]*,\1.o HomogeneousTauLeapingFixedMidpoint.d : ,g' < HomogeneousTauLeapingFixedMidpoint.d.$$ > HomogeneousTauLeapingFixedMidpoint.d; \ - rm -f HomogeneousTauLeapingFixedMidpoint.d.$$ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousDirectBinarySearchSorted.cc > HomogeneousDirectBinarySearchSorted.d.$$; \ + sed 's,\(HomogeneousDirectBinarySearchSorted\)\.o[ :]*,\1.o HomogeneousDirectBinarySearchSorted.d : ,g' < HomogeneousDirectBinarySearchSorted.d.$$ > HomogeneousDirectBinarySearchSorted.d; \ + rm -f HomogeneousDirectBinarySearchSorted.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousOdeReactionFixedForward.cc > HomogeneousOdeReactionFixedForward.d.$$; \ sed 's,\(HomogeneousOdeReactionFixedForward\)\.o[ :]*,\1.o HomogeneousOdeReactionFixedForward.d : ,g' < HomogeneousOdeReactionFixedForward.d.$$ > HomogeneousOdeReactionFixedForward.d; \ rm -f HomogeneousOdeReactionFixedForward.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousFirstReactionAbsoluteTime.cc > HomogeneousFirstReactionAbsoluteTime.d.$$; \ sed 's,\(HomogeneousFirstReactionAbsoluteTime\)\.o[ :]*,\1.o HomogeneousFirstReactionAbsoluteTime.d : ,g' < HomogeneousFirstReactionAbsoluteTime.d.$$ > HomogeneousFirstReactionAbsoluteTime.d; \ rm -f HomogeneousFirstReactionAbsoluteTime.d.$$ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsTransientDirectTreeNormalApproximation.cc > HomogeneousHistogramsTransientDirectTreeNormalApproximation.d.$$; \ - sed 's,\(HomogeneousHistogramsTransientDirectTreeNormalApproximation\)\.o[ :]*,\1.o HomogeneousHistogramsTransientDirectTreeNormalApproximation.d : ,g' < HomogeneousHistogramsTransientDirectTreeNormalApproximation.d.$$ > HomogeneousHistogramsTransientDirectTreeNormalApproximation.d; \ - rm -f HomogeneousHistogramsTransientDirectTreeNormalApproximation.d.$$ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousOdeReactionFixedMidpoint.cc > HomogeneousOdeReactionFixedMidpoint.d.$$; \ - sed 's,\(HomogeneousOdeReactionFixedMidpoint\)\.o[ :]*,\1.o HomogeneousOdeReactionFixedMidpoint.d : ,g' < HomogeneousOdeReactionFixedMidpoint.d.$$ > HomogeneousOdeReactionFixedMidpoint.d; \ - rm -f HomogeneousOdeReactionFixedMidpoint.d.$$ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionHashing.cc > HomogeneousNextReactionHashing.d.$$; \ + sed 's,\(HomogeneousNextReactionHashing\)\.o[ :]*,\1.o HomogeneousNextReactionHashing.d : ,g' < HomogeneousNextReactionHashing.d.$$ > HomogeneousNextReactionHashing.d; \ + rm -f HomogeneousNextReactionHashing.d.$$ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingImplicitFixedEuler.cc > HomogeneousTauLeapingImplicitFixedEuler.d.$$; \ + sed 's,\(HomogeneousTauLeapingImplicitFixedEuler\)\.o[ :]*,\1.o HomogeneousTauLeapingImplicitFixedEuler.d : ,g' < HomogeneousTauLeapingImplicitFixedEuler.d.$$ > HomogeneousTauLeapingImplicitFixedEuler.d; \ + rm -f HomogeneousTauLeapingImplicitFixedEuler.d.$$ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingImplicitFixedEuler.cc -lrt -o HomogeneousTauLeapingImplicitFixedEuler -g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsTransientDirectTreeNormalApproximation.cc -lrt -o HomogeneousHistogramsTransientDirectTreeNormalApproximation -g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousFirstReactionAbsoluteTime.cc -lrt -o HomogeneousFirstReactionAbsoluteTime -In file included from HomogeneousFirstReactionAbsoluteTime.cc:21: -HomogeneousFirstReaction.ipp: In function 'int main(int, char**)': -HomogeneousFirstReaction.ipp:50:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] - DiscreteUniformGenerator; - ^~~~~~~~~~~~~~~~~~~~~~~~ -In file included from HomogeneousHistogramsTransientDirectTreeNormalApproximation.cc:25: -HomogeneousHistogramsTransientDirect.ipp: In function 'int main(int, char**)': -HomogeneousHistogramsTransientDirect.ipp:49:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] +g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousDirect2DSearchSorted.cc -lrt -o HomogeneousDirect2DSearchSorted +In file included from HomogeneousDirect2DSearchSorted.cc:10: +HomogeneousDirect.ipp: In function 'int main(int, char**)': +HomogeneousDirect.ipp:57:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] DiscreteUniformGenerator; ^~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/8/algorithm:62, + from ../numerical/random/discrete/../../../ext/vector.h:12, + from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, + from ../numerical/random/discrete/DiscreteGenerator2DSearchSortedStatic.h:11, + from ../numerical/random/discrete/DiscreteGenerator2DSearchSorted.h:11, + from HomogeneousDirect2DSearchSorted.cc:4: +/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::ValueGreater>]': +/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + __insertion_sort(_RandomAccessIterator __first, + ^~~~~~~~~~~~~~~~ +/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 +In file included from ../stochastic/reactionPropensityInfluence.h:40, + from HomogeneousDirect.ipp:13, + from HomogeneousDirect2DSearchSorted.cc:10: +../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + computeReactionPropensityInfluence + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +In file included from /usr/include/c++/8/vector:69, + from ../numerical/random/discrete/../../../ext/vector.h:11, + from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, + from ../numerical/random/discrete/DiscreteGenerator2DSearchSortedStatic.h:11, + from ../numerical/random/discrete/DiscreteGenerator2DSearchSorted.h:11, + from HomogeneousDirect2DSearchSorted.cc:4: +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]': +/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 + vector<_Tp, _Alloc>:: + ^~~~~~~~~~~~~~~~~~~ +In file included from ../stochastic/State.h:347, + from ../stochastic/Solver.h:11, + from ../stochastic/Direct.h:11, + from HomogeneousDirect.ipp:11, + from HomogeneousDirect2DSearchSorted.cc:10: +../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + State:: + ^~~~~ +../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +In file included from /usr/include/c++/8/vector:64, + from ../numerical/random/discrete/../../../ext/vector.h:11, + from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, + from ../numerical/random/discrete/DiscreteGenerator2DSearchSortedStatic.h:11, + from ../numerical/random/discrete/DiscreteGenerator2DSearchSorted.h:11, + from HomogeneousDirect2DSearchSorted.cc:4: +/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + _M_fill_insert(end(), __new_size - size(), __x); + ^~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, - from ../stochastic/FirstReactionAbsoluteTime.h:11, - from HomogeneousFirstReactionAbsoluteTime.cc:4: + from ../stochastic/Direct.h:11, + from HomogeneousDirect.ipp:11, + from HomogeneousDirect2DSearchSorted.cc:10: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + buildStateChangeVectors(reactionsBegin, reactionsEnd); + ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, - from ../stochastic/../array/SparseVector.h:19, - from ../stochastic/State.h:11, - from ../stochastic/Solver.h:11, - from ../stochastic/Direct.h:11, - from ../stochastic/HistogramsBase.h:11, - from ../stochastic/HomogeneousHistogramsTransientDirectTreeNormalApproximation.h:11, - from HomogeneousHistogramsTransientDirectTreeNormalApproximation.cc:3: -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = stochastic::HistogramReference; _Alloc = std::allocator]': -/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 + from ../numerical/random/discrete/../../../ext/vector.h:11, + from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, + from ../numerical/random/discrete/DiscreteGenerator2DSearchSortedStatic.h:11, + from ../numerical/random/discrete/DiscreteGenerator2DSearchSorted.h:11, + from HomogeneousDirect2DSearchSorted.cc:4: +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]': +/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/8/vector:64, - from ../stochastic/../array/SparseVector.h:19, - from ../stochastic/State.h:11, - from ../stochastic/Solver.h:11, - from ../stochastic/Direct.h:11, - from ../stochastic/HistogramsBase.h:11, - from ../stochastic/HomogeneousHistogramsTransientDirectTreeNormalApproximation.h:11, - from HomogeneousHistogramsTransientDirectTreeNormalApproximation.cc:3: -/usr/include/c++/8/bits/stl_vector.h: In constructor 'stochastic::HistogramsBase<_DiscreteGenerator, _ExponentialGenerator, _PropensitiesFunctor>::HistogramsBase(const stochastic::State&, const PropensitiesFunctor&, const array::StaticArrayOfArrays&, const std::vector&, const std::vector&, std::size_t, std::size_t, double) [with _DiscreteGenerator = numerical::DiscreteGenerator2DSearch<>; _ExponentialGenerator = numerical::ExponentialGeneratorZiggurat<>; _PropensitiesFunctor = stochastic::PropensitiesSingle]': -/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - _M_fill_insert(end(), __new_size - size(), __x); - ^~~~~~~~~~~~~~ -In file included from ../stochastic/reactionPropensityInfluence.h:40, - from HomogeneousFirstReaction.ipp:8, - from HomogeneousFirstReactionAbsoluteTime.cc:21: -../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - computeReactionPropensityInfluence - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:69, from ../stochastic/../array/SparseVector.h:19, from ../stochastic/State.h:11, @@ -852,6 +910,129 @@ /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ +In file included from ../stochastic/Solver.h:11, + from ../stochastic/TauLeapingImplicit.h:11, + from HomogeneousTauLeapingImplicit.ipp:7, + from HomogeneousTauLeapingImplicitFixedEuler.cc:6: +../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + State(const std::vector& populations, + ^~~~~ +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + buildStateChangeVectors(reactionsBegin, reactionsEnd); + ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/8/algorithm:62, + from ../numerical/random/discrete/../../../ext/vector.h:12, + from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, + from ../numerical/random/discrete/DiscreteGenerator2DSearchSortedStatic.h:11, + from ../numerical/random/discrete/DiscreteGenerator2DSearchSorted.h:11, + from HomogeneousDirect2DSearchSorted.cc:4: +/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::ValueGreater>]': +/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + __introsort_loop(_RandomAccessIterator __first, + ^~~~~~~~~~~~~~~~ +/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 +/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + std::__introsort_loop(__cut, __last, __depth_limit, __comp); + ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/8/bits/stl_algo.h: In member function 'void numerical::DiscreteGenerator2DSearchSortedStatic::rebuild() [with Generator = numerical::DiscreteUniformGeneratorMt19937]': +/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + std::__introsort_loop(__first, __last, + ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + std::__lg(__last - __first) * 2, + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __comp); + ~~~~~~~ +/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + std::__insertion_sort(__first, __last, __comp); + ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from HomogeneousDirect2DSearchSorted.cc:10: +HomogeneousDirect.ipp: In function 'int main(int, char**)': +HomogeneousDirect.ipp:98:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + stochastic::computeReactionPropensityInfluence + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + &reactionInfluence, true); + ~~~~~~~~~~~~~~~~~~~~~~~~~ +HomogeneousDirect.ipp:105:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + Direct solver(State(initialPopulations, reactions.getBeginning(), + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + reactions.getEnd()), + ~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/8/vector:64, + from ../numerical/random/discrete/../../../ext/vector.h:11, + from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, + from ../numerical/random/discrete/DiscreteGenerator2DSearchSortedStatic.h:11, + from ../numerical/random/discrete/DiscreteGenerator2DSearchSorted.h:11, + from HomogeneousDirect2DSearchSorted.cc:4: +/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + _M_fill_insert(end(), __new_size - size(), __x); + ^~~~~~~~~~~~~~ +In file included from /usr/include/c++/8/algorithm:62, + from ../numerical/random/discrete/../../../ext/vector.h:12, + from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, + from ../numerical/random/discrete/DiscreteGenerator2DSearchSortedStatic.h:11, + from ../numerical/random/discrete/DiscreteGenerator2DSearchSorted.h:11, + from HomogeneousDirect2DSearchSorted.cc:4: +/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + std::__introsort_loop(__first, __last, + ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + std::__lg(__last - __first) * 2, + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __comp); + ~~~~~~~ +In file included from HomogeneousTauLeapingImplicitFixedEuler.cc:6: +HomogeneousTauLeapingImplicit.ipp: In function 'int main(int, char**)': +HomogeneousTauLeapingImplicit.ipp:68:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + Solver solver(State(initialPopulations, reactions.getBeginning(), + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + reactions.getEnd()), + ~~~~~~~~~~~~~~~~~~~ +g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsTransientDirectTreeNormalApproximation.cc -lrt -o HomogeneousHistogramsTransientDirectTreeNormalApproximation +In file included from HomogeneousHistogramsTransientDirectTreeNormalApproximation.cc:25: +HomogeneousHistogramsTransientDirect.ipp: In function 'int main(int, char**)': +HomogeneousHistogramsTransientDirect.ipp:49:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] + DiscreteUniformGenerator; + ^~~~~~~~~~~~~~~~~~~~~~~~ +g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingSalLinear.cc -lrt -o HomogeneousTauLeapingSalLinear +In file included from /usr/include/c++/8/vector:69, + from ../stochastic/../array/SparseVector.h:19, + from ../stochastic/State.h:11, + from ../stochastic/Solver.h:11, + from ../stochastic/Direct.h:11, + from ../stochastic/HistogramsBase.h:11, + from ../stochastic/HomogeneousHistogramsTransientDirectTreeNormalApproximation.h:11, + from HomogeneousHistogramsTransientDirectTreeNormalApproximation.cc:3: +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = stochastic::HistogramReference; _Alloc = std::allocator]': +/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 + vector<_Tp, _Alloc>:: + ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/8/vector:64, + from ../stochastic/../array/SparseVector.h:19, + from ../stochastic/State.h:11, + from ../stochastic/Solver.h:11, + from ../stochastic/Direct.h:11, + from ../stochastic/HistogramsBase.h:11, + from ../stochastic/HomogeneousHistogramsTransientDirectTreeNormalApproximation.h:11, + from HomogeneousHistogramsTransientDirectTreeNormalApproximation.cc:3: +/usr/include/c++/8/bits/stl_vector.h: In constructor 'stochastic::HistogramsBase<_DiscreteGenerator, _ExponentialGenerator, _PropensitiesFunctor>::HistogramsBase(const stochastic::State&, const PropensitiesFunctor&, const array::StaticArrayOfArrays&, const std::vector&, const std::vector&, std::size_t, std::size_t, double) [with _DiscreteGenerator = numerical::DiscreteGenerator2DSearch<>; _ExponentialGenerator = numerical::ExponentialGeneratorZiggurat<>; _PropensitiesFunctor = stochastic::PropensitiesSingle]': +/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + _M_fill_insert(end(), __new_size - size(), __x); + ^~~~~~~~~~~~~~ +In file included from ../stochastic/Solver.h:11, + from ../stochastic/TauLeapingSal.h:11, + from HomogeneousTauLeapingSal.ipp:17, + from HomogeneousTauLeapingSalLinear.cc:4: +../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + State(const std::vector& populations, + ^~~~~ +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousHistogramsTransientDirect.ipp:7, from HomogeneousHistogramsTransientDirectTreeNormalApproximation.cc:25: @@ -872,18 +1053,6 @@ /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ -In file included from ../stochastic/Solver.h:11, - from ../stochastic/TauLeapingImplicit.h:11, - from HomogeneousTauLeapingImplicit.ipp:7, - from HomogeneousTauLeapingImplicitFixedEuler.cc:6: -../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - State(const std::vector& populations, - ^~~~~ -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - buildStateChangeVectors(reactionsBegin, reactionsEnd); - ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/State.h:347, from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, @@ -906,20 +1075,6 @@ /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ -In file included from HomogeneousFirstReactionAbsoluteTime.cc:21: -HomogeneousFirstReaction.ipp: In function 'int main(int, char**)': -HomogeneousFirstReaction.ipp:74:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - stochastic::computeReactionPropensityInfluence - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - &reactionInfluence, false); - ~~~~~~~~~~~~~~~~~~~~~~~~~~ -HomogeneousFirstReaction.ipp:79:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - FirstReaction solver(State(initialPopulations, reactions.getBeginning(), - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - reactions.getEnd()), - ~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from ../stochastic/HistogramsBase.h:11, @@ -933,6 +1088,13 @@ ../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from HomogeneousTauLeapingSalLinear.cc:4: +HomogeneousTauLeapingSal.ipp: In function 'int main(int, char**)': +HomogeneousTauLeapingSal.ipp:78:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + TauLeaping solver(State(initialPopulations, reactions.getBeginning(), + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + reactions.getEnd()), + ~~~~~~~~~~~~~~~~~~~ In file included from HomogeneousHistogramsTransientDirectTreeNormalApproximation.cc:25: HomogeneousHistogramsTransientDirect.ipp: In function 'int main(int, char**)': HomogeneousHistogramsTransientDirect.ipp:81:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 @@ -947,14 +1109,43 @@ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ +g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousFirstReactionAbsoluteTime.cc -lrt -o HomogeneousFirstReactionAbsoluteTime +In file included from HomogeneousFirstReactionAbsoluteTime.cc:21: +HomogeneousFirstReaction.ipp: In function 'int main(int, char**)': +HomogeneousFirstReaction.ipp:50:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] + DiscreteUniformGenerator; + ^~~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousOdeReactionFixedForward.cc -lrt -o HomogeneousOdeReactionFixedForward -In file included from HomogeneousTauLeapingImplicitFixedEuler.cc:6: -HomogeneousTauLeapingImplicit.ipp: In function 'int main(int, char**)': -HomogeneousTauLeapingImplicit.ipp:68:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - Solver solver(State(initialPopulations, reactions.getBeginning(), - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - reactions.getEnd()), - ~~~~~~~~~~~~~~~~~~~ +In file included from ../stochastic/Solver.h:11, + from ../stochastic/FirstReactionAbsoluteTime.h:11, + from HomogeneousFirstReactionAbsoluteTime.cc:4: +../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + State(const std::vector& populations, + ^~~~~ +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +In file included from ../stochastic/reactionPropensityInfluence.h:40, + from HomogeneousFirstReaction.ipp:8, + from HomogeneousFirstReactionAbsoluteTime.cc:21: +../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + computeReactionPropensityInfluence + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +In file included from HomogeneousFirstReactionAbsoluteTime.cc:21: +HomogeneousFirstReaction.ipp: In function 'int main(int, char**)': +HomogeneousFirstReaction.ipp:74:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + stochastic::computeReactionPropensityInfluence + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + &reactionInfluence, false); + ~~~~~~~~~~~~~~~~~~~~~~~~~~ +HomogeneousFirstReaction.ipp:79:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + FirstReaction solver(State(initialPopulations, reactions.getBeginning(), + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + reactions.getEnd()), + ~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionHashingGenericList.cc -lrt -o HomogeneousNextReactionHashingGenericList g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousOdeReactionFixedMidpoint.cc -lrt -o HomogeneousOdeReactionFixedMidpoint In file included from ../stochastic/State.h:347, @@ -988,7 +1179,6 @@ computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousHybridDirectTauLeapingMidpoint.cc -lrt -o HomogeneousHybridDirectTauLeapingMidpoint In file included from HomogeneousNextReactionHashingGenericList.cc:14: HomogeneousNextReaction.ipp: In function 'int main(int, char**)': HomogeneousNextReaction.ipp:89:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 @@ -1005,29 +1195,6 @@ ~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingFixedRungeKutta4.cc -lrt -o HomogeneousTauLeapingFixedRungeKutta4 g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionBinaryHeapPair.cc -lrt -o HomogeneousNextReactionBinaryHeapPair -In file included from ../stochastic/State.h:347, - from ../stochastic/Solver.h:11, - from ../stochastic/HybridDirectTauLeaping.h:11, - from HomogeneousHybridDirectTauLeaping.ipp:17, - from HomogeneousHybridDirectTauLeapingMidpoint.cc:6: -../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - State:: - ^~~~~ -../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -In file included from ../stochastic/Solver.h:11, - from ../stochastic/HybridDirectTauLeaping.h:11, - from HomogeneousHybridDirectTauLeaping.ipp:17, - from HomogeneousHybridDirectTauLeapingMidpoint.cc:6: -../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - State(const std::vector& populations, - ^~~~~ -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - buildStateChangeVectors(reactionsBegin, reactionsEnd); - ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/NextReaction.h:11, from HomogeneousNextReaction.ipp:11, @@ -1060,13 +1227,6 @@ ../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from HomogeneousHybridDirectTauLeapingMidpoint.cc:6: -HomogeneousHybridDirectTauLeaping.ipp: In function 'int main(int, char**)': -HomogeneousHybridDirectTauLeaping.ipp:84:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - solver(State(initialPopulations, reactions.getBeginning(), - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - reactions.getEnd()), - ~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousNextReaction.ipp:14, from HomogeneousNextReactionBinaryHeapPair.cc:8: @@ -1102,6 +1262,7 @@ HomogeneousDirect.ipp:57:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] DiscreteUniformGenerator; ^~~~~~~~~~~~~~~~~~~~~~~~ +g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionPartitionSizeAdaptive.cc -lrt -o HomogeneousNextReactionPartitionSizeAdaptive In file included from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from HomogeneousDirect.ipp:11, @@ -1111,8 +1272,17 @@ State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingRungeKutta4.cc -lrt -o HomogeneousTauLeapingRungeKutta4 -g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingForwardNoCorrection.cc -lrt -o HomogeneousTauLeapingForwardNoCorrection +In file included from /usr/include/c++/8/bits/stl_algo.h:61, + from /usr/include/c++/8/algorithm:62, + from ../ads/indexedPriorityQueue/../../ext/vector.h:12, + from ../ads/indexedPriorityQueue/IndexedPriorityQueueBase.h:11, + from ../ads/indexedPriorityQueue/IndexedPriorityQueuePartitionLinearSearch.h:11, + from ../ads/indexedPriorityQueue/IndexedPriorityQueuePartitionLinearSearchSizeAdaptive.h:11, + from HomogeneousNextReactionPartitionSizeAdaptive.cc:3: +/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, + ^~~~~~~~~~~~~ In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousDirect.ipp:13, from HomogeneousDirectLinearSearch.cc:11: @@ -1121,24 +1291,37 @@ computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +In file included from ../stochastic/State.h:347, + from ../stochastic/Solver.h:11, + from ../stochastic/NextReaction.h:11, + from HomogeneousNextReaction.ipp:11, + from HomogeneousNextReactionPartitionSizeAdaptive.cc:11: +../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + State:: + ^~~~~ +../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from ../stochastic/Solver.h:11, - from ../stochastic/TauLeaping.h:11, - from HomogeneousTauLeaping.ipp:17, - from HomogeneousTauLeapingRungeKutta4.cc:8: + from ../stochastic/NextReaction.h:11, + from HomogeneousNextReaction.ipp:11, + from HomogeneousNextReactionPartitionSizeAdaptive.cc:11: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -In file included from ../stochastic/Solver.h:11, - from ../stochastic/TauLeaping.h:11, - from HomogeneousTauLeaping.ipp:17, - from HomogeneousTauLeapingForwardNoCorrection.cc:8: -../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - State(const std::vector& populations, - ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + buildStateChangeVectors(reactionsBegin, reactionsEnd); + ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from ../stochastic/reactionPropensityInfluence.h:40, + from HomogeneousNextReaction.ipp:14, + from HomogeneousNextReactionPartitionSizeAdaptive.cc:11: +../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + computeReactionPropensityInfluence + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from HomogeneousDirectLinearSearch.cc:11: HomogeneousDirect.ipp: In function 'int main(int, char**)': HomogeneousDirect.ipp:98:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 @@ -1153,13 +1336,30 @@ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ -In file included from HomogeneousTauLeapingRungeKutta4.cc:8: -HomogeneousTauLeaping.ipp: In function 'int main(int, char**)': -HomogeneousTauLeaping.ipp:83:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - TauLeaping solver(State(initialPopulations, reactions.getBeginning(), - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - reactions.getEnd()), - ~~~~~~~~~~~~~~~~~~~ +In file included from HomogeneousNextReactionPartitionSizeAdaptive.cc:11: +HomogeneousNextReaction.ipp: In function 'int main(int, char**)': +HomogeneousNextReaction.ipp:89:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + stochastic::computeReactionPropensityInfluence + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + &reactionInfluence, false); + ~~~~~~~~~~~~~~~~~~~~~~~~~~ +HomogeneousNextReaction.ipp:149:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + NextReaction solver(State(initialPopulations, reactions.getBeginning(), + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + reactions.getEnd()), + ~~~~~~~~~~~~~~~~~~~ +g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingForwardNoCorrection.cc -lrt -o HomogeneousTauLeapingForwardNoCorrection +In file included from ../stochastic/Solver.h:11, + from ../stochastic/TauLeaping.h:11, + from HomogeneousTauLeaping.ipp:17, + from HomogeneousTauLeapingForwardNoCorrection.cc:8: +../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + State(const std::vector& populations, + ^~~~~ +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousHybridDirectTauLeapingForward.cc -lrt -o HomogeneousHybridDirectTauLeapingForward In file included from HomogeneousTauLeapingForwardNoCorrection.cc:8: HomogeneousTauLeaping.ipp: In function 'int main(int, char**)': @@ -1168,21 +1368,6 @@ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ -g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousFirstReaction.cc -lrt -o HomogeneousFirstReaction -In file included from HomogeneousFirstReaction.cc:19: -HomogeneousFirstReaction.ipp: In function 'int main(int, char**)': -HomogeneousFirstReaction.ipp:50:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] - DiscreteUniformGenerator; - ^~~~~~~~~~~~~~~~~~~~~~~~ -g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingFixedMidpoint.cc -lrt -o HomogeneousTauLeapingFixedMidpoint -In file included from ../stochastic/Solver.h:11, - from ../stochastic/FirstReaction.h:11, - from HomogeneousFirstReaction.cc:4: -../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - State(const std::vector& populations, - ^~~~~ -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:69, from ../stochastic/../array/SparseVector.h:19, from ../stochastic/State.h:11, @@ -1215,15 +1400,6 @@ _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, - from ../stochastic/TauLeaping.h:11, - from HomogeneousTauLeaping.ipp:17, - from HomogeneousTauLeapingFixedMidpoint.cc:9: -../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - State(const std::vector& populations, - ^~~~~ -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -In file included from ../stochastic/Solver.h:11, from ../stochastic/HybridDirectTauLeaping.h:11, from HomogeneousHybridDirectTauLeaping.ipp:17, from HomogeneousHybridDirectTauLeapingForward.cc:6: @@ -1235,13 +1411,12 @@ ../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ +g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousFirstReaction.cc -lrt -o HomogeneousFirstReaction In file included from HomogeneousFirstReaction.cc:19: HomogeneousFirstReaction.ipp: In function 'int main(int, char**)': -HomogeneousFirstReaction.ipp:84:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - FirstReaction solver(State(initialPopulations, reactions.getBeginning(), - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - reactions.getEnd()), - ~~~~~~~~~~~~~~~~~~~ +HomogeneousFirstReaction.ipp:50:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] + DiscreteUniformGenerator; + ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from HomogeneousHybridDirectTauLeapingForward.cc:6: HomogeneousHybridDirectTauLeaping.ipp: In function 'int main(int, char**)': HomogeneousHybridDirectTauLeaping.ipp:84:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 @@ -1249,7 +1424,47 @@ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ -g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousDirect2DSearchBubbleSort.cc -lrt -o HomogeneousDirect2DSearchBubbleSort +In file included from ../stochastic/Solver.h:11, + from ../stochastic/FirstReaction.h:11, + from HomogeneousFirstReaction.cc:4: +../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + State(const std::vector& populations, + ^~~~~ +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingFixedMidpoint.cc -lrt -o HomogeneousTauLeapingFixedMidpoint +In file included from HomogeneousFirstReaction.cc:19: +HomogeneousFirstReaction.ipp: In function 'int main(int, char**)': +HomogeneousFirstReaction.ipp:84:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + FirstReaction solver(State(initialPopulations, reactions.getBeginning(), + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + reactions.getEnd()), + ~~~~~~~~~~~~~~~~~~~ +In file included from ../stochastic/Solver.h:11, + from ../stochastic/TauLeaping.h:11, + from HomogeneousTauLeaping.ipp:17, + from HomogeneousTauLeapingFixedMidpoint.cc:9: +../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + State(const std::vector& populations, + ^~~~~ +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousDirectLinearSearchSorted.cc -lrt -o HomogeneousDirectLinearSearchSorted +In file included from HomogeneousDirectLinearSearchSorted.cc:13: +HomogeneousDirect.ipp: In function 'int main(int, char**)': +HomogeneousDirect.ipp:57:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] + DiscreteUniformGenerator; + ^~~~~~~~~~~~~~~~~~~~~~~~ +In file included from ../stochastic/State.h:347, + from ../stochastic/Solver.h:11, + from ../stochastic/Direct.h:11, + from HomogeneousDirect.ipp:11, + from HomogeneousDirectLinearSearchSorted.cc:13: +../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + State:: + ^~~~~ +../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from HomogeneousTauLeapingFixedMidpoint.cc:9: HomogeneousTauLeaping.ipp: In function 'int main(int, char**)': HomogeneousTauLeaping.ipp:83:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 @@ -1257,12 +1472,74 @@ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ +In file included from ../stochastic/Solver.h:11, + from ../stochastic/Direct.h:11, + from HomogeneousDirect.ipp:11, + from HomogeneousDirectLinearSearchSorted.cc:13: +../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + State(const std::vector& populations, + ^~~~~ +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + buildStateChangeVectors(reactionsBegin, reactionsEnd); + ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from ../stochastic/reactionPropensityInfluence.h:40, + from HomogeneousDirect.ipp:13, + from HomogeneousDirectLinearSearchSorted.cc:13: +../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + computeReactionPropensityInfluence + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +In file included from /usr/include/c++/8/algorithm:62, + from ../numerical/random/discrete/../../../ext/vector.h:12, + from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, + from ../numerical/random/discrete/DgPmfAndSumOrderedPairPointer.h:11, + from ../numerical/random/discrete/DiscreteGeneratorLinearSearchSorted.h:11, + from HomogeneousDirectLinearSearchSorted.cc:4: +/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::ValueGreater>]': +/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + __introsort_loop(_RandomAccessIterator __first, + ^~~~~~~~~~~~~~~~ +/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 +/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + std::__introsort_loop(__cut, __last, __depth_limit, __comp); + ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousDirect2DSearchBubbleSort.cc -lrt -o HomogeneousDirect2DSearchBubbleSort In file included from HomogeneousDirect2DSearchBubbleSort.cc:10: HomogeneousDirect.ipp: In function 'int main(int, char**)': HomogeneousDirect.ipp:57:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] DiscreteUniformGenerator; ^~~~~~~~~~~~~~~~~~~~~~~~ -g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionLinearSearch.cc -lrt -o HomogeneousNextReactionLinearSearch +In file included from HomogeneousDirectLinearSearchSorted.cc:13: +HomogeneousDirect.ipp: In function 'int main(int, char**)': +HomogeneousDirect.ipp:98:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + stochastic::computeReactionPropensityInfluence + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + &reactionInfluence, true); + ~~~~~~~~~~~~~~~~~~~~~~~~~ +HomogeneousDirect.ipp:105:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + Direct solver(State(initialPopulations, reactions.getBeginning(), + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + reactions.getEnd()), + ~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/8/algorithm:62, + from ../numerical/random/discrete/../../../ext/vector.h:12, + from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, + from ../numerical/random/discrete/DgPmfAndSumOrderedPairPointer.h:11, + from ../numerical/random/discrete/DiscreteGeneratorLinearSearchSorted.h:11, + from HomogeneousDirectLinearSearchSorted.cc:4: +/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + std::__introsort_loop(__first, __last, + ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + std::__lg(__last - __first) * 2, + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __comp); + ~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from ../numerical/random/discrete/../../../ext/vector.h:12, from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, @@ -1273,15 +1550,6 @@ __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 -In file included from ../stochastic/Solver.h:11, - from ../stochastic/NextReaction.h:11, - from HomogeneousNextReaction.ipp:11, - from HomogeneousNextReactionLinearSearch.cc:8: -../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - State(const std::vector& populations, - ^~~~~ -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousDirect.ipp:13, from HomogeneousDirect2DSearchBubbleSort.cc:10: @@ -1299,7 +1567,6 @@ /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ -g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsAverageAps.cc -lrt -o HomogeneousHistogramsAverageAps In file included from ../stochastic/State.h:347, from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, @@ -1318,11 +1585,7 @@ /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ -In file included from HomogeneousHistogramsAverageAps.cc:10: -HomogeneousHistogramsAverageAps.ipp: In function 'int main(int, char**)': -HomogeneousHistogramsAverageAps.ipp:57:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] - DiscreteUniformGenerator; - ^~~~~~~~~~~~~~~~~~~~~~~~ +g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionLinearSearch.cc -lrt -o HomogeneousNextReactionLinearSearch In file included from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from HomogeneousDirect.ipp:11, @@ -1335,14 +1598,6 @@ ../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from ../stochastic/reactionPropensityInfluence.h:40, - from HomogeneousNextReaction.ipp:14, - from HomogeneousNextReactionLinearSearch.cc:8: -../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - computeReactionPropensityInfluence - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:69, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, @@ -1365,24 +1620,15 @@ /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/8/vector:69, - from ../numerical/random/discrete/../../../ext/vector.h:11, - from ../numerical/random/discrete/DgPmf.h:11, - from ../numerical/random/discrete/DiscreteGenerator2DSearchStatic.h:11, - from ../numerical/random/discrete/DiscreteGenerator2DSearch.h:11, - from HomogeneousHistogramsAverageAps.cc:4: -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 - vector<_Tp, _Alloc>:: - ^~~~~~~~~~~~~~~~~~~ -In file included from ../stochastic/reactionPropensityInfluence.h:40, - from HomogeneousHistogramsAverageAps.ipp:13, - from HomogeneousHistogramsAverageAps.cc:10: -../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - computeReactionPropensityInfluence - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +In file included from ../stochastic/Solver.h:11, + from ../stochastic/NextReaction.h:11, + from HomogeneousNextReaction.ipp:11, + from HomogeneousNextReactionLinearSearch.cc:8: +../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + State(const std::vector& populations, + ^~~~~ +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from HomogeneousDirect2DSearchBubbleSort.cc:10: HomogeneousDirect.ipp: In function 'int main(int, char**)': HomogeneousDirect.ipp:98:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 @@ -1423,17 +1669,63 @@ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from ../stochastic/reactionPropensityInfluence.h:40, + from HomogeneousNextReaction.ipp:14, + from HomogeneousNextReactionLinearSearch.cc:8: +../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + computeReactionPropensityInfluence + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionPartitionPropensities.cc -lrt -o HomogeneousNextReactionPartitionPropensities +In file included from HomogeneousNextReactionLinearSearch.cc:8: +HomogeneousNextReaction.ipp: In function 'int main(int, char**)': +HomogeneousNextReaction.ipp:89:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + stochastic::computeReactionPropensityInfluence + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + &reactionInfluence, false); + ~~~~~~~~~~~~~~~~~~~~~~~~~~ +HomogeneousNextReaction.ipp:149:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + NextReaction solver(State(initialPopulations, reactions.getBeginning(), + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + reactions.getEnd()), + ~~~~~~~~~~~~~~~~~~~ +In file included from ../stochastic/Solver.h:11, + from ../stochastic/NextReaction.h:11, + from HomogeneousNextReaction.ipp:11, + from HomogeneousNextReactionPartitionPropensities.cc:9: +../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + State(const std::vector& populations, + ^~~~~ +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsAverageAps.cc -lrt -o HomogeneousHistogramsAverageAps +In file included from HomogeneousHistogramsAverageAps.cc:10: +HomogeneousHistogramsAverageAps.ipp: In function 'int main(int, char**)': +HomogeneousHistogramsAverageAps.ipp:57:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] + DiscreteUniformGenerator; + ^~~~~~~~~~~~~~~~~~~~~~~~ +In file included from ../stochastic/reactionPropensityInfluence.h:40, + from HomogeneousNextReaction.ipp:14, + from HomogeneousNextReactionPartitionPropensities.cc:9: +../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + computeReactionPropensityInfluence + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:69, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmf.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearchStatic.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearch.h:11, from HomogeneousHistogramsAverageAps.cc:4: -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]': -/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ -In file included from HomogeneousNextReactionLinearSearch.cc:8: +In file included from HomogeneousNextReactionPartitionPropensities.cc:9: HomogeneousNextReaction.ipp: In function 'int main(int, char**)': HomogeneousNextReaction.ipp:89:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence @@ -1447,6 +1739,24 @@ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ +In file included from ../stochastic/reactionPropensityInfluence.h:40, + from HomogeneousHistogramsAverageAps.ipp:13, + from HomogeneousHistogramsAverageAps.cc:10: +../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + computeReactionPropensityInfluence + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +In file included from /usr/include/c++/8/vector:69, + from ../numerical/random/discrete/../../../ext/vector.h:11, + from ../numerical/random/discrete/DgPmf.h:11, + from ../numerical/random/discrete/DiscreteGenerator2DSearchStatic.h:11, + from ../numerical/random/discrete/DiscreteGenerator2DSearch.h:11, + from HomogeneousHistogramsAverageAps.cc:4: +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]': +/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 + vector<_Tp, _Alloc>:: + ^~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/State.h:347, from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, @@ -1483,12 +1793,6 @@ buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousHistogramFinalHypoexponentialDirect2DSearch.cc -lrt -o HomogeneousHistogramFinalHypoexponentialDirect2DSearch -g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingSalLinear.cc -lrt -o HomogeneousTauLeapingSalLinear -In file included from HomogeneousHistogramFinalHypoexponentialDirect2DSearch.cc:8: -HomogeneousHistogramFinalHypoexponentialDirect.ipp: In function 'int main(int, char**)': -HomogeneousHistogramFinalHypoexponentialDirect.ipp:54:55: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] - typedef DiscreteGenerator::DiscreteUniformGenerator DiscreteUniformGenerator; - ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmf.h:11, @@ -1512,15 +1816,16 @@ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ -In file included from ../stochastic/Solver.h:11, - from ../stochastic/TauLeapingSal.h:11, - from HomogeneousTauLeapingSal.ipp:17, - from HomogeneousTauLeapingSalLinear.cc:4: -../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - State(const std::vector& populations, - ^~~~~ -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +In file included from HomogeneousHistogramFinalHypoexponentialDirect2DSearch.cc:8: +HomogeneousHistogramFinalHypoexponentialDirect.ipp: In function 'int main(int, char**)': +HomogeneousHistogramFinalHypoexponentialDirect.ipp:54:55: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] + typedef DiscreteGenerator::DiscreteUniformGenerator DiscreteUniformGenerator; + ^~~~~~~~~~~~~~~~~~~~~~~~ +g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousTrajectoryTreeFull.cc -lrt -o HomogeneousTrajectoryTreeFull +HomogeneousTrajectoryTreeFull.cc: In function 'int main(int, char**)': +HomogeneousTrajectoryTreeFull.cc:56:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] + DiscreteUniformGenerator; + ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousHistogramFinalHypoexponentialDirect.ipp:13, from HomogeneousHistogramFinalHypoexponentialDirect2DSearch.cc:8: @@ -1529,12 +1834,6 @@ computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousDirectCompositionRejection.cc -lrt -o HomogeneousDirectCompositionRejection -In file included from HomogeneousDirectCompositionRejection.cc:11: -HomogeneousDirect.ipp: In function 'int main(int, char**)': -HomogeneousDirect.ipp:57:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] - DiscreteUniformGenerator; - ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmf.h:11, @@ -1577,65 +1876,57 @@ buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/reactionPropensityInfluence.h:40, - from HomogeneousDirect.ipp:13, - from HomogeneousDirectCompositionRejection.cc:11: + from HomogeneousTrajectoryTreeFull.cc:9: ../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -In file included from HomogeneousTauLeapingSalLinear.cc:4: -HomogeneousTauLeapingSal.ipp: In function 'int main(int, char**)': -HomogeneousTauLeapingSal.ipp:78:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - TauLeaping solver(State(initialPopulations, reactions.getBeginning(), - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - reactions.getEnd()), - ~~~~~~~~~~~~~~~~~~~ +In file included from HomogeneousHistogramFinalHypoexponentialDirect2DSearch.cc:8: +HomogeneousHistogramFinalHypoexponentialDirect.ipp: In function 'int main(int, char**)': +HomogeneousHistogramFinalHypoexponentialDirect.ipp:97:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + stochastic::computeReactionPropensityInfluence + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + &reactionInfluence, true); + ~~~~~~~~~~~~~~~~~~~~~~~~~ +HomogeneousHistogramFinalHypoexponentialDirect.ipp:103:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + Solver solver(State(initialPopulations, reactions.getBeginning(), + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + reactions.getEnd()), + ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, - from ../numerical/random/discrete/../../../ext/vector.h:11, - from ../numerical/random/discrete/DiscreteGeneratorCompositionRejectionStatic.h:15, - from ../numerical/random/discrete/DiscreteGeneratorCompositionRejection.h:11, - from HomogeneousDirectCompositionRejection.cc:4: + from ../stochastic/../array/SparseVector.h:19, + from ../stochastic/State.h:11, + from ../stochastic/Solver.h:11, + from ../stochastic/TrajectoryTreeFull.h:11, + from HomogeneousTrajectoryTreeFull.cc:7: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/State.h:347, from ../stochastic/Solver.h:11, - from ../stochastic/Direct.h:11, - from HomogeneousDirect.ipp:11, - from HomogeneousDirectCompositionRejection.cc:11: + from ../stochastic/TrajectoryTreeFull.h:11, + from HomogeneousTrajectoryTreeFull.cc:7: ../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State:: ^~~~~ ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, - from ../numerical/random/discrete/../../../ext/vector.h:11, - from ../numerical/random/discrete/DiscreteGeneratorCompositionRejectionStatic.h:15, - from ../numerical/random/discrete/DiscreteGeneratorCompositionRejection.h:11, - from HomogeneousDirectCompositionRejection.cc:4: + from ../stochastic/../array/SparseVector.h:19, + from ../stochastic/State.h:11, + from ../stochastic/Solver.h:11, + from ../stochastic/TrajectoryTreeFull.h:11, + from HomogeneousTrajectoryTreeFull.cc:7: /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ -In file included from HomogeneousHistogramFinalHypoexponentialDirect2DSearch.cc:8: -HomogeneousHistogramFinalHypoexponentialDirect.ipp: In function 'int main(int, char**)': -HomogeneousHistogramFinalHypoexponentialDirect.ipp:97:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - stochastic::computeReactionPropensityInfluence - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - &reactionInfluence, true); - ~~~~~~~~~~~~~~~~~~~~~~~~~ -HomogeneousHistogramFinalHypoexponentialDirect.ipp:103:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - Solver solver(State(initialPopulations, reactions.getBeginning(), - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - reactions.getEnd()), - ~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, - from ../stochastic/Direct.h:11, - from HomogeneousDirect.ipp:11, - from HomogeneousDirectCompositionRejection.cc:11: + from ../stochastic/TrajectoryTreeFull.h:11, + from HomogeneousTrajectoryTreeFull.cc:7: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, @@ -1644,98 +1935,58 @@ ../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from ../numerical/random/discrete/DiscreteGeneratorCompositionRejection.h:11, - from HomogeneousDirectCompositionRejection.cc:4: -../numerical/random/discrete/DiscreteGeneratorCompositionRejectionStatic.h: In member function 'void numerical::DiscreteGeneratorCompositionRejectionStatic::initialize(ForwardIterator, ForwardIterator) [with ForwardIterator = __gnu_cxx::__normal_iterator >; Generator = numerical::DiscreteUniformGeneratorMt19937]': -../numerical/random/discrete/DiscreteGeneratorCompositionRejectionStatic.h:375:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - initialize(ForwardIterator begin, ForwardIterator end) { - ^~~~~~~~~~ -../numerical/random/discrete/DiscreteGeneratorCompositionRejectionStatic.h:375:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionPartitionSizeAdaptive.cc -lrt -o HomogeneousNextReactionPartitionSizeAdaptive -g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousDirectLinearSearchDelayedUpdate.cc -lrt -o HomogeneousDirectLinearSearchDelayedUpdate -In file included from HomogeneousDirectLinearSearchDelayedUpdate.cc:11: -HomogeneousDirect.ipp: In function 'int main(int, char**)': -HomogeneousDirect.ipp:57:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] - DiscreteUniformGenerator; - ^~~~~~~~~~~~~~~~~~~~~~~~ -In file included from HomogeneousDirectCompositionRejection.cc:11: -HomogeneousDirect.ipp: In function 'int main(int, char**)': -HomogeneousDirect.ipp:98:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousOdeReactionRungeKuttaCashKarp.cc -lrt -o HomogeneousOdeReactionRungeKuttaCashKarp +HomogeneousTrajectoryTreeFull.cc: In function 'int main(int, char**)': +HomogeneousTrajectoryTreeFull.cc:98:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &reactionInfluence, true); ~~~~~~~~~~~~~~~~~~~~~~~~~ -HomogeneousDirect.ipp:105:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - Direct solver(State(initialPopulations, reactions.getBeginning(), +HomogeneousTrajectoryTreeFull.cc:104:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + Solver solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - reactions.getEnd()), - ~~~~~~~~~~~~~~~~~~~ -In file included from HomogeneousDirectCompositionRejection.cc:4: -../numerical/random/discrete/DiscreteGeneratorCompositionRejection.h:183:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - Base::initialize(begin, end); - ~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/8/bits/stl_algo.h:61, - from /usr/include/c++/8/algorithm:62, - from ../ads/indexedPriorityQueue/../../ext/vector.h:12, - from ../ads/indexedPriorityQueue/IndexedPriorityQueueBase.h:11, - from ../ads/indexedPriorityQueue/IndexedPriorityQueuePartitionLinearSearch.h:11, - from ../ads/indexedPriorityQueue/IndexedPriorityQueuePartitionLinearSearchSizeAdaptive.h:11, - from HomogeneousNextReactionPartitionSizeAdaptive.cc:3: -/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, - ^~~~~~~~~~~~~ -In file included from ../stochastic/Solver.h:11, - from ../stochastic/Direct.h:11, - from HomogeneousDirect.ipp:11, - from HomogeneousDirectLinearSearchDelayedUpdate.cc:11: -../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - State(const std::vector& populations, - ^~~~~ -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -In file included from ../stochastic/State.h:347, - from ../stochastic/Solver.h:11, - from ../stochastic/NextReaction.h:11, - from HomogeneousNextReaction.ipp:11, - from HomogeneousNextReactionPartitionSizeAdaptive.cc:11: -../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - State:: - ^~~~~ -../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -In file included from ../stochastic/Solver.h:11, - from ../stochastic/NextReaction.h:11, - from HomogeneousNextReaction.ipp:11, - from HomogeneousNextReactionPartitionSizeAdaptive.cc:11: -../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - State(const std::vector& populations, - ^~~~~ -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - buildStateChangeVectors(reactionsBegin, reactionsEnd); - ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from ../stochastic/reactionPropensityInfluence.h:40, - from HomogeneousDirect.ipp:13, - from HomogeneousDirectLinearSearchDelayedUpdate.cc:11: -../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - computeReactionPropensityInfluence - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + reactions.getEnd()), + ~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/8/vector:69, + from ../stochastic/../array/SparseVector.h:19, + from ../stochastic/Reaction.h:11, + from ../stochastic/ReactionSet.h:11, + from ../stochastic/Propensities.h:11, + from HomogeneousOdeReaction.ipp:10, + from HomogeneousOdeReactionRungeKuttaCashKarp.cc:6: +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 + vector<_Tp, _Alloc>:: + ^~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingMidpointNoCorrection.cc -lrt -o HomogeneousTauLeapingMidpointNoCorrection -In file included from ../stochastic/reactionPropensityInfluence.h:40, - from HomogeneousNextReaction.ipp:14, - from HomogeneousNextReactionPartitionSizeAdaptive.cc:11: -../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - computeReactionPropensityInfluence - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +In file included from /usr/include/c++/8/vector:64, + from ../stochastic/../array/SparseVector.h:19, + from ../stochastic/Reaction.h:11, + from ../stochastic/ReactionSet.h:11, + from ../stochastic/Propensities.h:11, + from HomogeneousOdeReaction.ipp:10, + from HomogeneousOdeReactionRungeKuttaCashKarp.cc:6: +/usr/include/c++/8/bits/stl_vector.h: In function 'int main(int, char**)': +/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + _M_fill_insert(end(), __new_size - size(), __x); + ^~~~~~~~~~~~~~ +/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + _M_fill_insert(end(), __new_size - size(), __x); + ^~~~~~~~~~~~~~ +/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + _M_fill_insert(end(), __new_size - size(), __x); + ^~~~~~~~~~~~~~ +/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + _M_fill_insert(end(), __new_size - size(), __x); + ^~~~~~~~~~~~~~ +/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + _M_fill_insert(end(), __new_size - size(), __x); + ^~~~~~~~~~~~~~ +/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + _M_fill_insert(end(), __new_size - size(), __x); + ^~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/TauLeaping.h:11, from HomogeneousTauLeaping.ipp:17, @@ -1745,41 +1996,12 @@ State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -In file included from HomogeneousDirectLinearSearchDelayedUpdate.cc:11: -HomogeneousDirect.ipp: In function 'int main(int, char**)': -HomogeneousDirect.ipp:98:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - stochastic::computeReactionPropensityInfluence - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - &reactionInfluence, true); - ~~~~~~~~~~~~~~~~~~~~~~~~~ -HomogeneousDirect.ipp:105:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - Direct solver(State(initialPopulations, reactions.getBeginning(), - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - reactions.getEnd()), - ~~~~~~~~~~~~~~~~~~~ -In file included from HomogeneousNextReactionPartitionSizeAdaptive.cc:11: -HomogeneousNextReaction.ipp: In function 'int main(int, char**)': -HomogeneousNextReaction.ipp:89:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - stochastic::computeReactionPropensityInfluence - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - &reactionInfluence, false); - ~~~~~~~~~~~~~~~~~~~~~~~~~~ -HomogeneousNextReaction.ipp:149:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - NextReaction solver(State(initialPopulations, reactions.getBeginning(), - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - reactions.getEnd()), - ~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousDirectLinearSearchBubbleSort.cc -lrt -o HomogeneousDirectLinearSearchBubbleSort In file included from HomogeneousDirectLinearSearchBubbleSort.cc:11: HomogeneousDirect.ipp: In function 'int main(int, char**)': HomogeneousDirect.ipp:57:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] DiscreteUniformGenerator; ^~~~~~~~~~~~~~~~~~~~~~~~ -g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingFixedForward.cc -lrt -o HomogeneousTauLeapingFixedForward In file included from HomogeneousTauLeapingMidpointNoCorrection.cc:8: HomogeneousTauLeaping.ipp: In function 'int main(int, char**)': HomogeneousTauLeaping.ipp:83:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 @@ -1798,15 +2020,6 @@ ^~~~~ ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from ../stochastic/Solver.h:11, - from ../stochastic/TauLeaping.h:11, - from HomogeneousTauLeaping.ipp:17, - from HomogeneousTauLeapingFixedForward.cc:9: -../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - State(const std::vector& populations, - ^~~~~ -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -In file included from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from HomogeneousDirect.ipp:11, from HomogeneousDirectLinearSearchBubbleSort.cc:11: @@ -1827,7 +2040,6 @@ computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousDirectAllReactions2DSearch.cc -lrt -o HomogeneousDirectAllReactions2DSearch In file included from /usr/include/c++/8/algorithm:62, from ../numerical/random/discrete/../../../ext/vector.h:12, from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, @@ -1842,20 +2054,7 @@ /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from HomogeneousDirectAllReactions2DSearch.cc:10: -HomogeneousDirectAllReactions.ipp: In function 'int main(int, char**)': -HomogeneousDirectAllReactions.ipp:57:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] - DiscreteUniformGenerator; - ^~~~~~~~~~~~~~~~~~~~~~~~ -In file included from ../stochastic/Solver.h:11, - from ../stochastic/Direct.h:11, - from HomogeneousDirectAllReactions.ipp:11, - from HomogeneousDirectAllReactions2DSearch.cc:10: -../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - State(const std::vector& populations, - ^~~~~ -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingFixedForward.cc -lrt -o HomogeneousTauLeapingFixedForward In file included from HomogeneousDirectLinearSearchBubbleSort.cc:11: HomogeneousDirect.ipp: In function 'int main(int, char**)': HomogeneousDirect.ipp:98:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 @@ -1883,6 +2082,16 @@ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ +In file included from ../stochastic/Solver.h:11, + from ../stochastic/TauLeaping.h:11, + from HomogeneousTauLeaping.ipp:17, + from HomogeneousTauLeapingFixedForward.cc:9: +../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + State(const std::vector& populations, + ^~~~~ +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousHybridDirectTauLeapingMidpoint.cc -lrt -o HomogeneousHybridDirectTauLeapingMidpoint In file included from HomogeneousTauLeapingFixedForward.cc:9: HomogeneousTauLeaping.ipp: In function 'int main(int, char**)': HomogeneousTauLeaping.ipp:83:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 @@ -1890,63 +2099,42 @@ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/8/vector:69, - from ../numerical/random/discrete/../../../ext/vector.h:11, - from ../numerical/random/discrete/DgPmf.h:11, - from ../numerical/random/discrete/DiscreteGenerator2DSearchStatic.h:11, - from ../numerical/random/discrete/DiscreteGenerator2DSearch.h:11, - from HomogeneousDirectAllReactions2DSearch.cc:4: -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 - vector<_Tp, _Alloc>:: - ^~~~~~~~~~~~~~~~~~~ -In file included from ../stochastic/reactionPropensityInfluence.h:40, - from HomogeneousDirectAllReactions.ipp:13, - from HomogeneousDirectAllReactions2DSearch.cc:10: -../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - computeReactionPropensityInfluence - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsTransientDirectTreeExponentialLast.cc -lrt -o HomogeneousHistogramsTransientDirectTreeExponentialLast +In file included from ../stochastic/State.h:347, + from ../stochastic/Solver.h:11, + from ../stochastic/HybridDirectTauLeaping.h:11, + from HomogeneousHybridDirectTauLeaping.ipp:17, + from HomogeneousHybridDirectTauLeapingMidpoint.cc:6: +../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + State:: + ^~~~~ +../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from HomogeneousHistogramsTransientDirectTreeExponentialLast.cc:24: HomogeneousHistogramsTransientDirect.ipp: In function 'int main(int, char**)': HomogeneousHistogramsTransientDirect.ipp:49:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] DiscreteUniformGenerator; ^~~~~~~~~~~~~~~~~~~~~~~~ -g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionPartitionPropensities.cc -lrt -o HomogeneousNextReactionPartitionPropensities -In file included from /usr/include/c++/8/vector:64, - from ../numerical/random/discrete/../../../ext/vector.h:11, - from ../numerical/random/discrete/DgPmf.h:11, - from ../numerical/random/discrete/DiscreteGenerator2DSearchStatic.h:11, - from ../numerical/random/discrete/DiscreteGenerator2DSearch.h:11, - from HomogeneousDirectAllReactions2DSearch.cc:4: -/usr/include/c++/8/bits/stl_vector.h: In function 'int main(int, char**)': -/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - _M_fill_insert(end(), __new_size - size(), __x); - ^~~~~~~~~~~~~~ -In file included from HomogeneousDirectAllReactions2DSearch.cc:10: -HomogeneousDirectAllReactions.ipp:102:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - stochastic::computeReactionPropensityInfluence - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - &reactionInfluence, true); - ~~~~~~~~~~~~~~~~~~~~~~~~~ -HomogeneousDirectAllReactions.ipp:109:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - Direct solver(State(initialPopulations, reactions.getBeginning(), - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - reactions.getEnd()), - ~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, - from ../stochastic/NextReaction.h:11, - from HomogeneousNextReaction.ipp:11, - from HomogeneousNextReactionPartitionPropensities.cc:9: + from ../stochastic/HybridDirectTauLeaping.h:11, + from HomogeneousHybridDirectTauLeaping.ipp:17, + from HomogeneousHybridDirectTauLeapingMidpoint.cc:6: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + buildStateChangeVectors(reactionsBegin, reactionsEnd); + ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from HomogeneousHybridDirectTauLeapingMidpoint.cc:6: +HomogeneousHybridDirectTauLeaping.ipp: In function 'int main(int, char**)': +HomogeneousHybridDirectTauLeaping.ipp:84:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + solver(State(initialPopulations, reactions.getBeginning(), + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + reactions.getEnd()), + ~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousHistogramsTransientDirect.ipp:7, from HomogeneousHistogramsTransientDirectTreeExponentialLast.cc:24: @@ -1967,15 +2155,6 @@ /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ -In file included from ../stochastic/reactionPropensityInfluence.h:40, - from HomogeneousNextReaction.ipp:14, - from HomogeneousNextReactionPartitionPropensities.cc:9: -../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - computeReactionPropensityInfluence - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousDirectRejectionBinsSplitting.cc -lrt -o HomogeneousDirectRejectionBinsSplitting In file included from ../stochastic/State.h:347, from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, @@ -1998,11 +2177,6 @@ /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ -In file included from HomogeneousDirectRejectionBinsSplitting.cc:12: -HomogeneousDirect.ipp: In function 'int main(int, char**)': -HomogeneousDirect.ipp:57:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] - DiscreteUniformGenerator; - ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from ../stochastic/HistogramsBase.h:11, @@ -2016,23 +2190,7 @@ ../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/8/vector:69, - from ../numerical/random/discrete/../../../ads/algorithm/sort.h:17, - from ../numerical/random/discrete/DiscreteGeneratorRejectionBinsSplittingStatic.h:15, - from ../numerical/random/discrete/DiscreteGeneratorRejectionBinsSplitting.h:11, - from HomogeneousDirectRejectionBinsSplitting.cc:4: -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 - vector<_Tp, _Alloc>:: - ^~~~~~~~~~~~~~~~~~~ -In file included from ../stochastic/reactionPropensityInfluence.h:40, - from HomogeneousDirect.ipp:13, - from HomogeneousDirectRejectionBinsSplitting.cc:12: -../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - computeReactionPropensityInfluence - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionBinaryHeapPointer.cc -lrt -o HomogeneousNextReactionBinaryHeapPointer In file included from HomogeneousHistogramsTransientDirectTreeExponentialLast.cc:24: HomogeneousHistogramsTransientDirect.ipp: In function 'int main(int, char**)': HomogeneousHistogramsTransientDirect.ipp:81:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 @@ -2047,7 +2205,30 @@ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ -In file included from HomogeneousNextReactionPartitionPropensities.cc:9: +In file included from ../stochastic/Solver.h:11, + from ../stochastic/NextReaction.h:11, + from HomogeneousNextReaction.ipp:11, + from HomogeneousNextReactionBinaryHeapPointer.cc:8: +../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + State(const std::vector& populations, + ^~~~~ +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +In file included from ../stochastic/reactionPropensityInfluence.h:40, + from HomogeneousNextReaction.ipp:14, + from HomogeneousNextReactionBinaryHeapPointer.cc:8: +../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + computeReactionPropensityInfluence + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousDirectCompositionRejection.cc -lrt -o HomogeneousDirectCompositionRejection +In file included from HomogeneousDirectCompositionRejection.cc:11: +HomogeneousDirect.ipp: In function 'int main(int, char**)': +HomogeneousDirect.ipp:57:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] + DiscreteUniformGenerator; + ^~~~~~~~~~~~~~~~~~~~~~~~ +In file included from HomogeneousNextReactionBinaryHeapPointer.cc:8: HomogeneousNextReaction.ipp: In function 'int main(int, char**)': HomogeneousNextReaction.ipp:89:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence @@ -2061,11 +2242,19 @@ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ +In file included from ../stochastic/reactionPropensityInfluence.h:40, + from HomogeneousDirect.ipp:13, + from HomogeneousDirectCompositionRejection.cc:11: +../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + computeReactionPropensityInfluence + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:69, - from ../numerical/random/discrete/../../../ads/algorithm/sort.h:17, - from ../numerical/random/discrete/DiscreteGeneratorRejectionBinsSplittingStatic.h:15, - from ../numerical/random/discrete/DiscreteGeneratorRejectionBinsSplitting.h:11, - from HomogeneousDirectRejectionBinsSplitting.cc:4: + from ../numerical/random/discrete/../../../ext/vector.h:11, + from ../numerical/random/discrete/DiscreteGeneratorCompositionRejectionStatic.h:15, + from ../numerical/random/discrete/DiscreteGeneratorCompositionRejection.h:11, + from HomogeneousDirectCompositionRejection.cc:4: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: @@ -2074,24 +2263,24 @@ from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from HomogeneousDirect.ipp:11, - from HomogeneousDirectRejectionBinsSplitting.cc:12: + from HomogeneousDirectCompositionRejection.cc:11: ../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State:: ^~~~~ ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, - from ../numerical/random/discrete/../../../ads/algorithm/sort.h:17, - from ../numerical/random/discrete/DiscreteGeneratorRejectionBinsSplittingStatic.h:15, - from ../numerical/random/discrete/DiscreteGeneratorRejectionBinsSplitting.h:11, - from HomogeneousDirectRejectionBinsSplitting.cc:4: + from ../numerical/random/discrete/../../../ext/vector.h:11, + from ../numerical/random/discrete/DiscreteGeneratorCompositionRejectionStatic.h:15, + from ../numerical/random/discrete/DiscreteGeneratorCompositionRejection.h:11, + from HomogeneousDirectCompositionRejection.cc:4: /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from HomogeneousDirect.ipp:11, - from HomogeneousDirectRejectionBinsSplitting.cc:12: + from HomogeneousDirectCompositionRejection.cc:11: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, @@ -2100,14 +2289,15 @@ ../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ -g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousDirect2DSearchSorted.cc -lrt -o HomogeneousDirect2DSearchSorted +In file included from ../numerical/random/discrete/DiscreteGeneratorCompositionRejection.h:11, + from HomogeneousDirectCompositionRejection.cc:4: +../numerical/random/discrete/DiscreteGeneratorCompositionRejectionStatic.h: In member function 'void numerical::DiscreteGeneratorCompositionRejectionStatic::initialize(ForwardIterator, ForwardIterator) [with ForwardIterator = __gnu_cxx::__normal_iterator >; Generator = numerical::DiscreteUniformGeneratorMt19937]': +../numerical/random/discrete/DiscreteGeneratorCompositionRejectionStatic.h:375:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + initialize(ForwardIterator begin, ForwardIterator end) { + ^~~~~~~~~~ +../numerical/random/discrete/DiscreteGeneratorCompositionRejectionStatic.h:375:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionBinaryHeapGibsonBruck.cc -lrt -o HomogeneousNextReactionBinaryHeapGibsonBruck -In file included from HomogeneousDirect2DSearchSorted.cc:10: -HomogeneousDirect.ipp: In function 'int main(int, char**)': -HomogeneousDirect.ipp:57:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] - DiscreteUniformGenerator; - ^~~~~~~~~~~~~~~~~~~~~~~~ -In file included from HomogeneousDirectRejectionBinsSplitting.cc:12: +In file included from HomogeneousDirectCompositionRejection.cc:11: HomogeneousDirect.ipp: In function 'int main(int, char**)': HomogeneousDirect.ipp:98:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence @@ -2121,28 +2311,10 @@ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/8/vector:64, - from ../numerical/random/discrete/../../../ads/algorithm/sort.h:17, - from ../numerical/random/discrete/DiscreteGeneratorRejectionBinsSplittingStatic.h:15, - from ../numerical/random/discrete/DiscreteGeneratorRejectionBinsSplitting.h:11, - from HomogeneousDirectRejectionBinsSplitting.cc:4: -/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - _M_fill_insert(end(), __new_size - size(), __x); - ^~~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - _M_fill_insert(end(), __new_size - size(), __x); - ^~~~~~~~~~~~~~ -In file included from /usr/include/c++/8/algorithm:62, - from ../numerical/random/discrete/../../../ext/vector.h:12, - from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, - from ../numerical/random/discrete/DiscreteGenerator2DSearchSortedStatic.h:11, - from ../numerical/random/discrete/DiscreteGenerator2DSearchSorted.h:11, - from HomogeneousDirect2DSearchSorted.cc:4: -/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::ValueGreater>]': -/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - __insertion_sort(_RandomAccessIterator __first, - ^~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 +In file included from HomogeneousDirectCompositionRejection.cc:4: +../numerical/random/discrete/DiscreteGeneratorCompositionRejection.h:183:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + Base::initialize(begin, end); + ~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/NextReaction.h:11, from HomogeneousNextReaction.ipp:11, @@ -2153,8 +2325,119 @@ ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from ../stochastic/reactionPropensityInfluence.h:40, + from HomogeneousNextReaction.ipp:14, + from HomogeneousNextReactionBinaryHeapGibsonBruck.cc:10: +../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + computeReactionPropensityInfluence + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingRungeKutta4.cc -lrt -o HomogeneousTauLeapingRungeKutta4 +In file included from HomogeneousNextReactionBinaryHeapGibsonBruck.cc:10: +HomogeneousNextReaction.ipp: In function 'int main(int, char**)': +HomogeneousNextReaction.ipp:89:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + stochastic::computeReactionPropensityInfluence + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + &reactionInfluence, false); + ~~~~~~~~~~~~~~~~~~~~~~~~~~ +HomogeneousNextReaction.ipp:149:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + NextReaction solver(State(initialPopulations, reactions.getBeginning(), + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + reactions.getEnd()), + ~~~~~~~~~~~~~~~~~~~ +In file included from ../stochastic/Solver.h:11, + from ../stochastic/TauLeaping.h:11, + from HomogeneousTauLeaping.ipp:17, + from HomogeneousTauLeapingRungeKutta4.cc:8: +../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + State(const std::vector& populations, + ^~~~~ +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionHashing.cc -lrt -o HomogeneousNextReactionHashing +In file included from HomogeneousTauLeapingRungeKutta4.cc:8: +HomogeneousTauLeaping.ipp: In function 'int main(int, char**)': +HomogeneousTauLeaping.ipp:83:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + TauLeaping solver(State(initialPopulations, reactions.getBeginning(), + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + reactions.getEnd()), + ~~~~~~~~~~~~~~~~~~~ +In file included from ../stochastic/State.h:347, + from ../stochastic/Solver.h:11, + from ../stochastic/NextReaction.h:11, + from HomogeneousNextReaction.ipp:11, + from HomogeneousNextReactionHashing.cc:10: +../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + State:: + ^~~~~ +../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousDirectBinarySearchSorted.cc -lrt -o HomogeneousDirectBinarySearchSorted +In file included from ../stochastic/Solver.h:11, + from ../stochastic/NextReaction.h:11, + from HomogeneousNextReaction.ipp:11, + from HomogeneousNextReactionHashing.cc:10: +../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector >&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + State(const std::vector& populations, + ^~~~~ +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + buildStateChangeVectors(reactionsBegin, reactionsEnd); + ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from ../stochastic/reactionPropensityInfluence.h:40, + from HomogeneousNextReaction.ipp:14, + from HomogeneousNextReactionHashing.cc:10: +../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + computeReactionPropensityInfluence + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +In file included from HomogeneousDirectBinarySearchSorted.cc:13: +HomogeneousDirect.ipp: In function 'int main(int, char**)': +HomogeneousDirect.ipp:57:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] + DiscreteUniformGenerator; + ^~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/8/bits/stl_algo.h:61, + from /usr/include/c++/8/algorithm:62, + from ../numerical/random/discrete/../../../ext/vector.h:12, + from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, + from ../numerical/random/discrete/DiscreteGeneratorBinarySearchSorted.h:11, + from HomogeneousDirectBinarySearchSorted.cc:4: +/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::ValueLess>]': +/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, + ^~~~~~~~~~~~~ +In file included from /usr/include/c++/8/algorithm:62, + from ../numerical/random/discrete/../../../ext/vector.h:12, + from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, + from ../numerical/random/discrete/DiscreteGeneratorBinarySearchSorted.h:11, + from HomogeneousDirectBinarySearchSorted.cc:4: +/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::ValueLess>]': +/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + __insertion_sort(_RandomAccessIterator __first, + ^~~~~~~~~~~~~~~~ +/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 +In file included from HomogeneousNextReactionHashing.cc:10: +HomogeneousNextReaction.ipp: In function 'int main(int, char**)': +HomogeneousNextReaction.ipp:89:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + stochastic::computeReactionPropensityInfluence + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + &reactionInfluence, false); + ~~~~~~~~~~~~~~~~~~~~~~~~~~ +HomogeneousNextReaction.ipp:149:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + NextReaction solver(State(initialPopulations, reactions.getBeginning(), + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + reactions.getEnd()), + ~~~~~~~~~~~~~~~~~~~ +In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousDirect.ipp:13, - from HomogeneousDirect2DSearchSorted.cc:10: + from HomogeneousDirectBinarySearchSorted.cc:13: ../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 computeReactionPropensityInfluence @@ -2163,9 +2446,8 @@ In file included from /usr/include/c++/8/vector:69, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, - from ../numerical/random/discrete/DiscreteGenerator2DSearchSortedStatic.h:11, - from ../numerical/random/discrete/DiscreteGenerator2DSearchSorted.h:11, - from HomogeneousDirect2DSearchSorted.cc:4: + from ../numerical/random/discrete/DiscreteGeneratorBinarySearchSorted.h:11, + from HomogeneousDirectBinarySearchSorted.cc:4: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: @@ -2174,7 +2456,7 @@ from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from HomogeneousDirect.ipp:11, - from HomogeneousDirect2DSearchSorted.cc:10: + from HomogeneousDirectBinarySearchSorted.cc:13: ../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State:: @@ -2183,24 +2465,15 @@ In file included from /usr/include/c++/8/vector:64, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, - from ../numerical/random/discrete/DiscreteGenerator2DSearchSortedStatic.h:11, - from ../numerical/random/discrete/DiscreteGenerator2DSearchSorted.h:11, - from HomogeneousDirect2DSearchSorted.cc:4: + from ../numerical/random/discrete/DiscreteGeneratorBinarySearchSorted.h:11, + from HomogeneousDirectBinarySearchSorted.cc:4: /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ -In file included from ../stochastic/reactionPropensityInfluence.h:40, - from HomogeneousNextReaction.ipp:14, - from HomogeneousNextReactionBinaryHeapGibsonBruck.cc:10: -../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - computeReactionPropensityInfluence - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from HomogeneousDirect.ipp:11, - from HomogeneousDirect2DSearchSorted.cc:10: + from HomogeneousDirectBinarySearchSorted.cc:13: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, @@ -2212,21 +2485,18 @@ In file included from /usr/include/c++/8/vector:69, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, - from ../numerical/random/discrete/DiscreteGenerator2DSearchSortedStatic.h:11, - from ../numerical/random/discrete/DiscreteGenerator2DSearchSorted.h:11, - from HomogeneousDirect2DSearchSorted.cc:4: + from ../numerical/random/discrete/DiscreteGeneratorBinarySearchSorted.h:11, + from HomogeneousDirectBinarySearchSorted.cc:4: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ -g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionHashing.cc -lrt -o HomogeneousNextReactionHashing In file included from /usr/include/c++/8/algorithm:62, from ../numerical/random/discrete/../../../ext/vector.h:12, from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, - from ../numerical/random/discrete/DiscreteGenerator2DSearchSortedStatic.h:11, - from ../numerical/random/discrete/DiscreteGenerator2DSearchSorted.h:11, - from HomogeneousDirect2DSearchSorted.cc:4: -/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::ValueGreater>]': + from ../numerical/random/discrete/DiscreteGeneratorBinarySearchSorted.h:11, + from HomogeneousDirectBinarySearchSorted.cc:4: +/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::ValueLess>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ @@ -2234,7 +2504,7 @@ /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_algo.h: In member function 'void numerical::DiscreteGenerator2DSearchSortedStatic::rebuild() [with Generator = numerical::DiscreteUniformGeneratorMt19937]': +/usr/include/c++/8/bits/stl_algo.h: In member function 'void numerical::DiscreteGeneratorBinarySearchSorted::rebuild() [with Generator = numerical::DiscreteUniformGeneratorMt19937]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ @@ -2248,21 +2518,8 @@ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from HomogeneousNextReactionBinaryHeapGibsonBruck.cc:10: -HomogeneousNextReaction.ipp: In function 'int main(int, char**)': -HomogeneousNextReaction.ipp:89:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - stochastic::computeReactionPropensityInfluence - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - &reactionInfluence, false); - ~~~~~~~~~~~~~~~~~~~~~~~~~~ -HomogeneousNextReaction.ipp:149:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - NextReaction solver(State(initialPopulations, reactions.getBeginning(), - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - reactions.getEnd()), - ~~~~~~~~~~~~~~~~~~~ -In file included from HomogeneousDirect2DSearchSorted.cc:10: +g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingSalFixedLinear.cc -lrt -o HomogeneousTauLeapingSalFixedLinear +In file included from HomogeneousDirectBinarySearchSorted.cc:13: HomogeneousDirect.ipp: In function 'int main(int, char**)': HomogeneousDirect.ipp:98:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence @@ -2279,81 +2536,126 @@ In file included from /usr/include/c++/8/vector:64, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, - from ../numerical/random/discrete/DiscreteGenerator2DSearchSortedStatic.h:11, - from ../numerical/random/discrete/DiscreteGenerator2DSearchSorted.h:11, - from HomogeneousDirect2DSearchSorted.cc:4: + from ../numerical/random/discrete/DiscreteGeneratorBinarySearchSorted.h:11, + from HomogeneousDirectBinarySearchSorted.cc:4: +/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + _M_fill_insert(end(), __new_size - size(), __x); + ^~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from ../numerical/random/discrete/../../../ext/vector.h:12, from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, - from ../numerical/random/discrete/DiscreteGenerator2DSearchSortedStatic.h:11, - from ../numerical/random/discrete/DiscreteGenerator2DSearchSorted.h:11, - from HomogeneousDirect2DSearchSorted.cc:4: -/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - std::__introsort_loop(__first, __last, - ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - std::__lg(__last - __first) * 2, - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __comp); - ~~~~~~~ + from ../numerical/random/discrete/DiscreteGeneratorBinarySearchSorted.h:11, + from HomogeneousDirectBinarySearchSorted.cc:4: +/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + std::__introsort_loop(__cut, __last, __depth_limit, __comp); + ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from ../stochastic/Solver.h:11, + from ../stochastic/TauLeapingSal.h:11, + from HomogeneousTauLeapingSal.ipp:17, + from HomogeneousTauLeapingSalFixedLinear.cc:6: +../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + State(const std::vector& populations, + ^~~~~ +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousDirectRejectionBinsSplitting.cc -lrt -o HomogeneousDirectRejectionBinsSplitting +In file included from HomogeneousDirectRejectionBinsSplitting.cc:12: +HomogeneousDirect.ipp: In function 'int main(int, char**)': +HomogeneousDirect.ipp:57:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] + DiscreteUniformGenerator; + ^~~~~~~~~~~~~~~~~~~~~~~~ +In file included from HomogeneousTauLeapingSalFixedLinear.cc:6: +HomogeneousTauLeapingSal.ipp: In function 'int main(int, char**)': +HomogeneousTauLeapingSal.ipp:78:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + TauLeaping solver(State(initialPopulations, reactions.getBeginning(), + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + reactions.getEnd()), + ~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/8/vector:69, + from ../numerical/random/discrete/../../../ads/algorithm/sort.h:17, + from ../numerical/random/discrete/DiscreteGeneratorRejectionBinsSplittingStatic.h:15, + from ../numerical/random/discrete/DiscreteGeneratorRejectionBinsSplitting.h:11, + from HomogeneousDirectRejectionBinsSplitting.cc:4: +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 + vector<_Tp, _Alloc>:: + ^~~~~~~~~~~~~~~~~~~ +In file included from ../stochastic/reactionPropensityInfluence.h:40, + from HomogeneousDirect.ipp:13, + from HomogeneousDirectRejectionBinsSplitting.cc:12: +../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + computeReactionPropensityInfluence + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +In file included from /usr/include/c++/8/vector:69, + from ../numerical/random/discrete/../../../ads/algorithm/sort.h:17, + from ../numerical/random/discrete/DiscreteGeneratorRejectionBinsSplittingStatic.h:15, + from ../numerical/random/discrete/DiscreteGeneratorRejectionBinsSplitting.h:11, + from HomogeneousDirectRejectionBinsSplitting.cc:4: +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]': +/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 + vector<_Tp, _Alloc>:: + ^~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/State.h:347, from ../stochastic/Solver.h:11, - from ../stochastic/NextReaction.h:11, - from HomogeneousNextReaction.ipp:11, - from HomogeneousNextReactionHashing.cc:10: + from ../stochastic/Direct.h:11, + from HomogeneousDirect.ipp:11, + from HomogeneousDirectRejectionBinsSplitting.cc:12: ../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State:: ^~~~~ ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +In file included from /usr/include/c++/8/vector:64, + from ../numerical/random/discrete/../../../ads/algorithm/sort.h:17, + from ../numerical/random/discrete/DiscreteGeneratorRejectionBinsSplittingStatic.h:15, + from ../numerical/random/discrete/DiscreteGeneratorRejectionBinsSplitting.h:11, + from HomogeneousDirectRejectionBinsSplitting.cc:4: +/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + _M_fill_insert(end(), __new_size - size(), __x); + ^~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, - from ../stochastic/NextReaction.h:11, - from HomogeneousNextReaction.ipp:11, - from HomogeneousNextReactionHashing.cc:10: -../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector >&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': + from ../stochastic/Direct.h:11, + from HomogeneousDirect.ipp:11, + from HomogeneousDirectRejectionBinsSplitting.cc:12: +../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 ../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from ../stochastic/reactionPropensityInfluence.h:40, - from HomogeneousNextReaction.ipp:14, - from HomogeneousNextReactionHashing.cc:10: -../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - computeReactionPropensityInfluence - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingSalFixedLinear.cc -lrt -o HomogeneousTauLeapingSalFixedLinear g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingRungeKutta4NoCorrection.cc -lrt -o HomogeneousTauLeapingRungeKutta4NoCorrection -In file included from HomogeneousNextReactionHashing.cc:10: -HomogeneousNextReaction.ipp: In function 'int main(int, char**)': -HomogeneousNextReaction.ipp:89:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +In file included from HomogeneousDirectRejectionBinsSplitting.cc:12: +HomogeneousDirect.ipp: In function 'int main(int, char**)': +HomogeneousDirect.ipp:98:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - &reactionInfluence, false); - ~~~~~~~~~~~~~~~~~~~~~~~~~~ -HomogeneousNextReaction.ipp:149:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - NextReaction solver(State(initialPopulations, reactions.getBeginning(), - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - reactions.getEnd()), - ~~~~~~~~~~~~~~~~~~~ -In file included from ../stochastic/Solver.h:11, - from ../stochastic/TauLeapingSal.h:11, - from HomogeneousTauLeapingSal.ipp:17, - from HomogeneousTauLeapingSalFixedLinear.cc:6: -../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - State(const std::vector& populations, - ^~~~~ -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + &reactionInfluence, true); + ~~~~~~~~~~~~~~~~~~~~~~~~~ +HomogeneousDirect.ipp:105:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + Direct solver(State(initialPopulations, reactions.getBeginning(), + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + reactions.getEnd()), + ~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/8/vector:64, + from ../numerical/random/discrete/../../../ads/algorithm/sort.h:17, + from ../numerical/random/discrete/DiscreteGeneratorRejectionBinsSplittingStatic.h:15, + from ../numerical/random/discrete/DiscreteGeneratorRejectionBinsSplitting.h:11, + from HomogeneousDirectRejectionBinsSplitting.cc:4: +/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + _M_fill_insert(end(), __new_size - size(), __x); + ^~~~~~~~~~~~~~ +/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + _M_fill_insert(end(), __new_size - size(), __x); + ^~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/TauLeaping.h:11, from HomogeneousTauLeaping.ipp:17, @@ -2364,13 +2666,6 @@ ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousHybridDirectTauLeapingRungeKutta4.cc -lrt -o HomogeneousHybridDirectTauLeapingRungeKutta4 -In file included from HomogeneousTauLeapingSalFixedLinear.cc:6: -HomogeneousTauLeapingSal.ipp: In function 'int main(int, char**)': -HomogeneousTauLeapingSal.ipp:78:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - TauLeaping solver(State(initialPopulations, reactions.getBeginning(), - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - reactions.getEnd()), - ~~~~~~~~~~~~~~~~~~~ In file included from HomogeneousTauLeapingRungeKutta4NoCorrection.cc:8: HomogeneousTauLeaping.ipp: In function 'int main(int, char**)': HomogeneousTauLeaping.ipp:83:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 @@ -2379,7 +2674,6 @@ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionPartitionCostAdaptive.cc -lrt -o HomogeneousNextReactionPartitionCostAdaptive -g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsTransientDirectTreeExponentialLimit.cc -lrt -o HomogeneousHistogramsTransientDirectTreeExponentialLimit In file included from /usr/include/c++/8/vector:69, from ../stochastic/../array/SparseVector.h:19, from ../stochastic/State.h:11, @@ -2413,11 +2707,17 @@ /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ -In file included from HomogeneousHistogramsTransientDirectTreeExponentialLimit.cc:24: -HomogeneousHistogramsTransientDirect.ipp: In function 'int main(int, char**)': -HomogeneousHistogramsTransientDirect.ipp:49:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] - DiscreteUniformGenerator; - ^~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/8/bits/stl_algo.h:61, + from /usr/include/c++/8/algorithm:62, + from ../ads/indexedPriorityQueue/../../ext/vector.h:12, + from ../ads/indexedPriorityQueue/IndexedPriorityQueueBase.h:11, + from ../ads/indexedPriorityQueue/IndexedPriorityQueuePartitionLinearSearch.h:11, + from ../ads/indexedPriorityQueue/IndexedPriorityQueuePartitionLinearSearchCostAdaptive.h:11, + from HomogeneousNextReactionPartitionCostAdaptive.cc:3: +/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, + ^~~~~~~~~~~~~ In file included from ../stochastic/State.h:347, from ../stochastic/Solver.h:11, from ../stochastic/HybridDirectTauLeaping.h:11, @@ -2438,17 +2738,6 @@ /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ -In file included from /usr/include/c++/8/bits/stl_algo.h:61, - from /usr/include/c++/8/algorithm:62, - from ../ads/indexedPriorityQueue/../../ext/vector.h:12, - from ../ads/indexedPriorityQueue/IndexedPriorityQueueBase.h:11, - from ../ads/indexedPriorityQueue/IndexedPriorityQueuePartitionLinearSearch.h:11, - from ../ads/indexedPriorityQueue/IndexedPriorityQueuePartitionLinearSearchCostAdaptive.h:11, - from HomogeneousNextReactionPartitionCostAdaptive.cc:3: -/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, - ^~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/HybridDirectTauLeaping.h:11, from HomogeneousHybridDirectTauLeaping.ipp:17, @@ -2499,6 +2788,32 @@ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ +In file included from HomogeneousNextReactionPartitionCostAdaptive.cc:11: +HomogeneousNextReaction.ipp: In function 'int main(int, char**)': +HomogeneousNextReaction.ipp:89:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + stochastic::computeReactionPropensityInfluence + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + &reactionInfluence, false); + ~~~~~~~~~~~~~~~~~~~~~~~~~~ +HomogeneousNextReaction.ipp:149:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + NextReaction solver(State(initialPopulations, reactions.getBeginning(), + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + reactions.getEnd()), + ~~~~~~~~~~~~~~~~~~~ +g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsTransientDirectTreeExponentialLimit.cc -lrt -o HomogeneousHistogramsTransientDirectTreeExponentialLimit +In file included from HomogeneousHistogramsTransientDirectTreeExponentialLimit.cc:24: +HomogeneousHistogramsTransientDirect.ipp: In function 'int main(int, char**)': +HomogeneousHistogramsTransientDirect.ipp:49:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] + DiscreteUniformGenerator; + ^~~~~~~~~~~~~~~~~~~~~~~~ +g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousDirectBinarySearchRecursiveCdf.cc -lrt -o HomogeneousDirectBinarySearchRecursiveCdf +In file included from HomogeneousDirectBinarySearchRecursiveCdf.cc:12: +HomogeneousDirect.ipp: In function 'int main(int, char**)': +HomogeneousDirect.ipp:57:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] + DiscreteUniformGenerator; + ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousHistogramsTransientDirect.ipp:7, from HomogeneousHistogramsTransientDirectTreeExponentialLimit.cc:24: @@ -2519,6 +2834,15 @@ /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ +In file included from ../stochastic/Solver.h:11, + from ../stochastic/Direct.h:11, + from HomogeneousDirect.ipp:11, + from HomogeneousDirectBinarySearchRecursiveCdf.cc:12: +../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + State(const std::vector& populations, + ^~~~~ +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from ../stochastic/State.h:347, from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, @@ -2554,26 +2878,14 @@ ../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from HomogeneousNextReactionPartitionCostAdaptive.cc:11: -HomogeneousNextReaction.ipp: In function 'int main(int, char**)': -HomogeneousNextReaction.ipp:89:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - stochastic::computeReactionPropensityInfluence - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - &reactionInfluence, false); - ~~~~~~~~~~~~~~~~~~~~~~~~~~ -HomogeneousNextReaction.ipp:149:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - NextReaction solver(State(initialPopulations, reactions.getBeginning(), - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - reactions.getEnd()), - ~~~~~~~~~~~~~~~~~~~ -g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousDirectBinarySearchRecursiveCdf.cc -lrt -o HomogeneousDirectBinarySearchRecursiveCdf -In file included from HomogeneousDirectBinarySearchRecursiveCdf.cc:12: -HomogeneousDirect.ipp: In function 'int main(int, char**)': -HomogeneousDirect.ipp:57:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] - DiscreteUniformGenerator; - ^~~~~~~~~~~~~~~~~~~~~~~~ +In file included from ../stochastic/reactionPropensityInfluence.h:40, + from HomogeneousDirect.ipp:13, + from HomogeneousDirectBinarySearchRecursiveCdf.cc:12: +../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + computeReactionPropensityInfluence + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from HomogeneousHistogramsTransientDirectTreeExponentialLimit.cc:24: HomogeneousHistogramsTransientDirect.ipp: In function 'int main(int, char**)': HomogeneousHistogramsTransientDirect.ipp:81:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 @@ -2588,24 +2900,21 @@ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ -In file included from ../stochastic/Solver.h:11, - from ../stochastic/Direct.h:11, - from HomogeneousDirect.ipp:11, - from HomogeneousDirectBinarySearchRecursiveCdf.cc:12: -../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - State(const std::vector& populations, - ^~~~~ -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +In file included from HomogeneousDirectBinarySearchRecursiveCdf.cc:12: +HomogeneousDirect.ipp: In function 'int main(int, char**)': +HomogeneousDirect.ipp:98:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + stochastic::computeReactionPropensityInfluence + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + &reactionInfluence, true); + ~~~~~~~~~~~~~~~~~~~~~~~~~ +HomogeneousDirect.ipp:105:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + Direct solver(State(initialPopulations, reactions.getBeginning(), + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + reactions.getEnd()), + ~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionPartitionFixedSize.cc -lrt -o HomogeneousNextReactionPartitionFixedSize -In file included from ../stochastic/reactionPropensityInfluence.h:40, - from HomogeneousDirect.ipp:13, - from HomogeneousDirectBinarySearchRecursiveCdf.cc:12: -../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - computeReactionPropensityInfluence - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousOdeReactionFixedRungeKuttaCashKarp.cc -lrt -o HomogeneousOdeReactionFixedRungeKuttaCashKarp In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, @@ -2627,20 +2936,6 @@ State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -In file included from HomogeneousDirectBinarySearchRecursiveCdf.cc:12: -HomogeneousDirect.ipp: In function 'int main(int, char**)': -HomogeneousDirect.ipp:98:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - stochastic::computeReactionPropensityInfluence - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - &reactionInfluence, true); - ~~~~~~~~~~~~~~~~~~~~~~~~~ -HomogeneousDirect.ipp:105:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - Direct solver(State(initialPopulations, reactions.getBeginning(), - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - reactions.getEnd()), - ~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousNextReaction.ipp:14, from HomogeneousNextReactionPartitionFixedSize.cc:9: @@ -2649,12 +2944,6 @@ computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsDirectTree.cc -lrt -o HomogeneousHistogramsDirectTree -In file included from HomogeneousHistogramsDirectTree.cc:10: -HomogeneousHistogramsDirectTree.ipp: In function 'int main(int, char**)': -HomogeneousHistogramsDirectTree.ipp:55:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] - DiscreteUniformGenerator; - ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from HomogeneousNextReactionPartitionFixedSize.cc:9: HomogeneousNextReaction.ipp: In function 'int main(int, char**)': HomogeneousNextReaction.ipp:89:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 @@ -2669,6 +2958,27 @@ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ +g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousDirectLinearSearchDelayedUpdate.cc -lrt -o HomogeneousDirectLinearSearchDelayedUpdate +In file included from HomogeneousDirectLinearSearchDelayedUpdate.cc:11: +HomogeneousDirect.ipp: In function 'int main(int, char**)': +HomogeneousDirect.ipp:57:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] + DiscreteUniformGenerator; + ^~~~~~~~~~~~~~~~~~~~~~~~ +g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsDirectTree.cc -lrt -o HomogeneousHistogramsDirectTree +In file included from HomogeneousHistogramsDirectTree.cc:10: +HomogeneousHistogramsDirectTree.ipp: In function 'int main(int, char**)': +HomogeneousHistogramsDirectTree.ipp:55:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] + DiscreteUniformGenerator; + ^~~~~~~~~~~~~~~~~~~~~~~~ +In file included from ../stochastic/Solver.h:11, + from ../stochastic/Direct.h:11, + from HomogeneousDirect.ipp:11, + from HomogeneousDirectLinearSearchDelayedUpdate.cc:11: +../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + State(const std::vector& populations, + ^~~~~ +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:69, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmf.h:11, @@ -2689,13 +2999,14 @@ /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ -g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousDirect2DSearch.cc -lrt -o HomogeneousDirect2DSearch -In file included from HomogeneousDirect2DSearch.cc:10: -HomogeneousDirect.ipp: In function 'int main(int, char**)': -HomogeneousDirect.ipp:57:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] - DiscreteUniformGenerator; - ^~~~~~~~~~~~~~~~~~~~~~~~ -g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionLinearSearchUnrolled.cc -lrt -o HomogeneousNextReactionLinearSearchUnrolled +In file included from ../stochastic/reactionPropensityInfluence.h:40, + from HomogeneousDirect.ipp:13, + from HomogeneousDirectLinearSearchDelayedUpdate.cc:11: +../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + computeReactionPropensityInfluence + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousHistogramsDirectTree.ipp:13, from HomogeneousHistogramsDirectTree.cc:10: @@ -2704,15 +3015,6 @@ computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -In file included from ../stochastic/Solver.h:11, - from ../stochastic/Direct.h:11, - from HomogeneousDirect.ipp:11, - from HomogeneousDirect2DSearch.cc:10: -../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - State(const std::vector& populations, - ^~~~~ -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:69, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmf.h:11, @@ -2747,15 +3049,20 @@ /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ -In file included from ../stochastic/Solver.h:11, - from ../stochastic/NextReaction.h:11, - from HomogeneousNextReaction.ipp:11, - from HomogeneousNextReactionLinearSearchUnrolled.cc:8: -../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - State(const std::vector& populations, - ^~~~~ -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +In file included from HomogeneousDirectLinearSearchDelayedUpdate.cc:11: +HomogeneousDirect.ipp: In function 'int main(int, char**)': +HomogeneousDirect.ipp:98:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + stochastic::computeReactionPropensityInfluence + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + &reactionInfluence, true); + ~~~~~~~~~~~~~~~~~~~~~~~~~ +HomogeneousDirect.ipp:105:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + Direct solver(State(initialPopulations, reactions.getBeginning(), + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + reactions.getEnd()), + ~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from ../stochastic/HistogramsBase.h:11, @@ -2770,22 +3077,6 @@ ../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from ../stochastic/reactionPropensityInfluence.h:40, - from HomogeneousDirect.ipp:13, - from HomogeneousDirect2DSearch.cc:10: -../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - computeReactionPropensityInfluence - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -In file included from ../stochastic/reactionPropensityInfluence.h:40, - from HomogeneousNextReaction.ipp:14, - from HomogeneousNextReactionLinearSearchUnrolled.cc:8: -../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - computeReactionPropensityInfluence - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from HomogeneousHistogramsDirectTree.cc:10: HomogeneousHistogramsDirectTree.ipp: In function 'int main(int, char**)': HomogeneousHistogramsDirectTree.ipp:103:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 @@ -2809,6 +3100,47 @@ /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator, numerical::ExponentialGeneratorZiggurat<>, stochastic::PropensitiesSingle >::TrajectoryTime*, std::vector, numerical::ExponentialGeneratorZiggurat<>, stochastic::PropensitiesSingle >::TrajectoryTime, std::allocator, numerical::ExponentialGeneratorZiggurat<>, stochastic::PropensitiesSingle >::TrajectoryTime> > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ +g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousDirect2DSearch.cc -lrt -o HomogeneousDirect2DSearch +In file included from HomogeneousDirect2DSearch.cc:10: +HomogeneousDirect.ipp: In function 'int main(int, char**)': +HomogeneousDirect.ipp:57:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] + DiscreteUniformGenerator; + ^~~~~~~~~~~~~~~~~~~~~~~~ +In file included from ../stochastic/Solver.h:11, + from ../stochastic/Direct.h:11, + from HomogeneousDirect.ipp:11, + from HomogeneousDirect2DSearch.cc:10: +../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + State(const std::vector& populations, + ^~~~~ +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionLinearSearchUnrolled.cc -lrt -o HomogeneousNextReactionLinearSearchUnrolled +In file included from ../stochastic/reactionPropensityInfluence.h:40, + from HomogeneousDirect.ipp:13, + from HomogeneousDirect2DSearch.cc:10: +../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + computeReactionPropensityInfluence + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +In file included from ../stochastic/Solver.h:11, + from ../stochastic/NextReaction.h:11, + from HomogeneousNextReaction.ipp:11, + from HomogeneousNextReactionLinearSearchUnrolled.cc:8: +../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + State(const std::vector& populations, + ^~~~~ +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +In file included from ../stochastic/reactionPropensityInfluence.h:40, + from HomogeneousNextReaction.ipp:14, + from HomogeneousNextReactionLinearSearchUnrolled.cc:8: +../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + computeReactionPropensityInfluence + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from HomogeneousDirect2DSearch.cc:10: HomogeneousDirect.ipp: In function 'int main(int, char**)': HomogeneousDirect.ipp:98:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 @@ -2843,17 +3175,7 @@ HomogeneousHistogramsMultiTimeDirect.ipp:55:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] DiscreteUniformGenerator; ^~~~~~~~~~~~~~~~~~~~~~~~ -g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionBinaryHeapPointer.cc -lrt -o HomogeneousNextReactionBinaryHeapPointer g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingForward.cc -lrt -o HomogeneousTauLeapingForward -In file included from ../stochastic/Solver.h:11, - from ../stochastic/NextReaction.h:11, - from HomogeneousNextReaction.ipp:11, - from HomogeneousNextReactionBinaryHeapPointer.cc:8: -../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - State(const std::vector& populations, - ^~~~~ -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousHistogramsMultiTimeDirect.ipp:13, from HomogeneousHistogramsMultiTimeDirect2DSearch.cc:10: @@ -2872,15 +3194,6 @@ /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ -In file included from ../stochastic/Solver.h:11, - from ../stochastic/TauLeaping.h:11, - from HomogeneousTauLeaping.ipp:17, - from HomogeneousTauLeapingForward.cc:8: -../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - State(const std::vector& populations, - ^~~~~ -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from ../stochastic/State.h:347, from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, @@ -2902,14 +3215,15 @@ /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ -In file included from ../stochastic/reactionPropensityInfluence.h:40, - from HomogeneousNextReaction.ipp:14, - from HomogeneousNextReactionBinaryHeapPointer.cc:8: -../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - computeReactionPropensityInfluence - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +In file included from ../stochastic/Solver.h:11, + from ../stochastic/TauLeaping.h:11, + from HomogeneousTauLeaping.ipp:17, + from HomogeneousTauLeapingForward.cc:8: +../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + State(const std::vector& populations, + ^~~~~ +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from ../stochastic/HistogramsBase.h:11, @@ -2938,20 +3252,6 @@ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ -In file included from HomogeneousNextReactionBinaryHeapPointer.cc:8: -HomogeneousNextReaction.ipp: In function 'int main(int, char**)': -HomogeneousNextReaction.ipp:89:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - stochastic::computeReactionPropensityInfluence - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - &reactionInfluence, false); - ~~~~~~~~~~~~~~~~~~~~~~~~~~ -HomogeneousNextReaction.ipp:149:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - NextReaction solver(State(initialPopulations, reactions.getBeginning(), - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - reactions.getEnd()), - ~~~~~~~~~~~~~~~~~~~ In file included from HomogeneousTauLeapingForward.cc:8: HomogeneousTauLeaping.ipp: In function 'int main(int, char**)': HomogeneousTauLeaping.ipp:83:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 @@ -2960,7 +3260,6 @@ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousOdeReactionFixedRungeKutta4.cc -lrt -o HomogeneousOdeReactionFixedRungeKutta4 -g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousOdeReactionRungeKuttaCashKarp.cc -lrt -o HomogeneousOdeReactionRungeKuttaCashKarp g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousFirstReactionInfluence.cc -lrt -o HomogeneousFirstReactionInfluence In file included from HomogeneousFirstReactionInfluence.cc:21: HomogeneousFirstReaction.ipp: In function 'int main(int, char**)': @@ -2976,17 +3275,6 @@ State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -In file included from /usr/include/c++/8/vector:69, - from ../stochastic/../array/SparseVector.h:19, - from ../stochastic/Reaction.h:11, - from ../stochastic/ReactionSet.h:11, - from ../stochastic/Propensities.h:11, - from HomogeneousOdeReaction.ipp:10, - from HomogeneousOdeReactionRungeKuttaCashKarp.cc:6: -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 - vector<_Tp, _Alloc>:: - ^~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousFirstReaction.ipp:8, from HomogeneousFirstReactionInfluence.cc:21: @@ -2995,33 +3283,7 @@ computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -In file included from /usr/include/c++/8/vector:64, - from ../stochastic/../array/SparseVector.h:19, - from ../stochastic/Reaction.h:11, - from ../stochastic/ReactionSet.h:11, - from ../stochastic/Propensities.h:11, - from HomogeneousOdeReaction.ipp:10, - from HomogeneousOdeReactionRungeKuttaCashKarp.cc:6: -/usr/include/c++/8/bits/stl_vector.h: In function 'int main(int, char**)': -/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - _M_fill_insert(end(), __new_size - size(), __x); - ^~~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - _M_fill_insert(end(), __new_size - size(), __x); - ^~~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - _M_fill_insert(end(), __new_size - size(), __x); - ^~~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - _M_fill_insert(end(), __new_size - size(), __x); - ^~~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - _M_fill_insert(end(), __new_size - size(), __x); - ^~~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - _M_fill_insert(end(), __new_size - size(), __x); - ^~~~~~~~~~~~~~ -g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousDirectLinearSearchSorted.cc -lrt -o HomogeneousDirectLinearSearchSorted +g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousDirectBinarySearch.cc -lrt -o HomogeneousDirectBinarySearch In file included from HomogeneousFirstReactionInfluence.cc:21: HomogeneousFirstReaction.ipp: In function 'int main(int, char**)': HomogeneousFirstReaction.ipp:74:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 @@ -3036,18 +3298,34 @@ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ -In file included from HomogeneousDirectLinearSearchSorted.cc:13: +In file included from HomogeneousDirectBinarySearch.cc:11: HomogeneousDirect.ipp: In function 'int main(int, char**)': HomogeneousDirect.ipp:57:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] DiscreteUniformGenerator; ^~~~~~~~~~~~~~~~~~~~~~~~ +In file included from ../stochastic/Solver.h:11, + from ../stochastic/Direct.h:11, + from HomogeneousDirect.ipp:11, + from HomogeneousDirectBinarySearch.cc:11: +../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + State(const std::vector& populations, + ^~~~~ +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsAverage.cc -lrt -o HomogeneousHistogramsAverage In file included from HomogeneousHistogramsAverage.cc:10: HomogeneousHistogramsAverage.ipp: In function 'int main(int, char**)': HomogeneousHistogramsAverage.ipp:57:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] DiscreteUniformGenerator; ^~~~~~~~~~~~~~~~~~~~~~~~ -g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsDirect2DSearch.cc -lrt -o HomogeneousHistogramsDirect2DSearch +In file included from ../stochastic/reactionPropensityInfluence.h:40, + from HomogeneousDirect.ipp:13, + from HomogeneousDirectBinarySearch.cc:11: +../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + computeReactionPropensityInfluence + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:69, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmf.h:11, @@ -3058,42 +3336,6 @@ /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ -In file included from ../stochastic/State.h:347, - from ../stochastic/Solver.h:11, - from ../stochastic/Direct.h:11, - from HomogeneousDirect.ipp:11, - from HomogeneousDirectLinearSearchSorted.cc:13: -../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - State:: - ^~~~~ -../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -In file included from HomogeneousHistogramsDirect2DSearch.cc:10: -HomogeneousHistogramsDirect.ipp: In function 'int main(int, char**)': -HomogeneousHistogramsDirect.ipp:55:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] - DiscreteUniformGenerator; - ^~~~~~~~~~~~~~~~~~~~~~~~ -In file included from ../stochastic/Solver.h:11, - from ../stochastic/Direct.h:11, - from HomogeneousDirect.ipp:11, - from HomogeneousDirectLinearSearchSorted.cc:13: -../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - State(const std::vector& populations, - ^~~~~ -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - buildStateChangeVectors(reactionsBegin, reactionsEnd); - ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from ../stochastic/reactionPropensityInfluence.h:40, - from HomogeneousDirect.ipp:13, - from HomogeneousDirectLinearSearchSorted.cc:13: -../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - computeReactionPropensityInfluence - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousHistogramsAverage.ipp:13, from HomogeneousHistogramsAverage.cc:10: @@ -3102,20 +3344,20 @@ computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -In file included from /usr/include/c++/8/algorithm:62, - from ../numerical/random/discrete/../../../ext/vector.h:12, - from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, - from ../numerical/random/discrete/DgPmfAndSumOrderedPairPointer.h:11, - from ../numerical/random/discrete/DiscreteGeneratorLinearSearchSorted.h:11, - from HomogeneousDirectLinearSearchSorted.cc:4: -/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::ValueGreater>]': -/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - __introsort_loop(_RandomAccessIterator __first, - ^~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 -/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - std::__introsort_loop(__cut, __last, __depth_limit, __comp); - ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from HomogeneousDirectBinarySearch.cc:11: +HomogeneousDirect.ipp: In function 'int main(int, char**)': +HomogeneousDirect.ipp:98:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + stochastic::computeReactionPropensityInfluence + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + &reactionInfluence, true); + ~~~~~~~~~~~~~~~~~~~~~~~~~ +HomogeneousDirect.ipp:105:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + Direct solver(State(initialPopulations, reactions.getBeginning(), + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + reactions.getEnd()), + ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmf.h:11, @@ -3161,6 +3403,35 @@ ../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ +g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsDirect2DSearch.cc -lrt -o HomogeneousHistogramsDirect2DSearch +In file included from HomogeneousHistogramsDirect2DSearch.cc:10: +HomogeneousHistogramsDirect.ipp: In function 'int main(int, char**)': +HomogeneousHistogramsDirect.ipp:55:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] + DiscreteUniformGenerator; + ^~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/8/vector:64, + from ../numerical/random/discrete/../../../ext/vector.h:11, + from ../numerical/random/discrete/DgPmf.h:11, + from ../numerical/random/discrete/DiscreteGenerator2DSearchStatic.h:11, + from ../numerical/random/discrete/DiscreteGenerator2DSearch.h:11, + from HomogeneousHistogramsAverage.cc:4: +/usr/include/c++/8/bits/stl_vector.h: In function 'int main(int, char**)': +/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + _M_fill_insert(end(), __new_size - size(), __x); + ^~~~~~~~~~~~~~ +In file included from HomogeneousHistogramsAverage.cc:10: +HomogeneousHistogramsAverage.ipp:110:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + stochastic::computeReactionPropensityInfluence + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + &reactionInfluence, true); + ~~~~~~~~~~~~~~~~~~~~~~~~~ +HomogeneousHistogramsAverage.ipp:117:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + Direct solver(State(initialPopulations, reactions.getBeginning(), + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + reactions.getEnd()), + ~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousHistogramsDirect.ipp:13, from HomogeneousHistogramsDirect2DSearch.cc:10: @@ -3169,6 +3440,7 @@ computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionHashingGenericVector.cc -lrt -o HomogeneousNextReactionHashingGenericVector In file included from /usr/include/c++/8/vector:69, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmf.h:11, @@ -3179,33 +3451,6 @@ /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ -In file included from HomogeneousDirectLinearSearchSorted.cc:13: -HomogeneousDirect.ipp: In function 'int main(int, char**)': -HomogeneousDirect.ipp:98:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - stochastic::computeReactionPropensityInfluence - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - &reactionInfluence, true); - ~~~~~~~~~~~~~~~~~~~~~~~~~ -HomogeneousDirect.ipp:105:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - Direct solver(State(initialPopulations, reactions.getBeginning(), - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - reactions.getEnd()), - ~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/8/algorithm:62, - from ../numerical/random/discrete/../../../ext/vector.h:12, - from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, - from ../numerical/random/discrete/DgPmfAndSumOrderedPairPointer.h:11, - from ../numerical/random/discrete/DiscreteGeneratorLinearSearchSorted.h:11, - from HomogeneousDirectLinearSearchSorted.cc:4: -/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - std::__introsort_loop(__first, __last, - ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - std::__lg(__last - __first) * 2, - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __comp); - ~~~~~~~ In file included from ../stochastic/State.h:347, from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, @@ -3241,29 +3486,16 @@ ../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/8/vector:64, - from ../numerical/random/discrete/../../../ext/vector.h:11, - from ../numerical/random/discrete/DgPmf.h:11, - from ../numerical/random/discrete/DiscreteGenerator2DSearchStatic.h:11, - from ../numerical/random/discrete/DiscreteGenerator2DSearch.h:11, - from HomogeneousHistogramsAverage.cc:4: -/usr/include/c++/8/bits/stl_vector.h: In function 'int main(int, char**)': -/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - _M_fill_insert(end(), __new_size - size(), __x); - ^~~~~~~~~~~~~~ -In file included from HomogeneousHistogramsAverage.cc:10: -HomogeneousHistogramsAverage.ipp:110:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - stochastic::computeReactionPropensityInfluence - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - &reactionInfluence, true); - ~~~~~~~~~~~~~~~~~~~~~~~~~ -HomogeneousHistogramsAverage.ipp:117:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - Direct solver(State(initialPopulations, reactions.getBeginning(), - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - reactions.getEnd()), - ~~~~~~~~~~~~~~~~~~~ +In file included from ../stochastic/State.h:347, + from ../stochastic/Solver.h:11, + from ../stochastic/NextReaction.h:11, + from HomogeneousNextReaction.ipp:11, + from HomogeneousNextReactionHashingGenericVector.cc:13: +../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + State:: + ^~~~~ +../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from HomogeneousHistogramsDirect2DSearch.cc:10: HomogeneousHistogramsDirect.ipp: In function 'int main(int, char**)': HomogeneousHistogramsDirect.ipp:96:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 @@ -3278,104 +3510,75 @@ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ -g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousDirectBinarySearchSorted.cc -lrt -o HomogeneousDirectBinarySearchSorted -In file included from HomogeneousDirectBinarySearchSorted.cc:13: -HomogeneousDirect.ipp: In function 'int main(int, char**)': -HomogeneousDirect.ipp:57:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] - DiscreteUniformGenerator; - ^~~~~~~~~~~~~~~~~~~~~~~~ -g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousDirectBinarySearch.cc -lrt -o HomogeneousDirectBinarySearch -In file included from /usr/include/c++/8/bits/stl_algo.h:61, - from /usr/include/c++/8/algorithm:62, - from ../numerical/random/discrete/../../../ext/vector.h:12, - from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, - from ../numerical/random/discrete/DiscreteGeneratorBinarySearchSorted.h:11, - from HomogeneousDirectBinarySearchSorted.cc:4: -/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::ValueLess>]': -/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, - ^~~~~~~~~~~~~ -In file included from /usr/include/c++/8/algorithm:62, - from ../numerical/random/discrete/../../../ext/vector.h:12, - from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, - from ../numerical/random/discrete/DiscreteGeneratorBinarySearchSorted.h:11, - from HomogeneousDirectBinarySearchSorted.cc:4: -/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::ValueLess>]': -/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - __insertion_sort(_RandomAccessIterator __first, - ^~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 -In file included from HomogeneousDirectBinarySearch.cc:11: -HomogeneousDirect.ipp: In function 'int main(int, char**)': -HomogeneousDirect.ipp:57:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] - DiscreteUniformGenerator; - ^~~~~~~~~~~~~~~~~~~~~~~~ -In file included from ../stochastic/reactionPropensityInfluence.h:40, - from HomogeneousDirect.ipp:13, - from HomogeneousDirectBinarySearchSorted.cc:13: -../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - computeReactionPropensityInfluence - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from ../stochastic/Solver.h:11, - from ../stochastic/Direct.h:11, - from HomogeneousDirect.ipp:11, - from HomogeneousDirectBinarySearch.cc:11: + from ../stochastic/NextReaction.h:11, + from HomogeneousNextReaction.ipp:11, + from HomogeneousNextReactionHashingGenericVector.cc:13: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionLinearSearchPointer.cc -lrt -o HomogeneousNextReactionLinearSearchPointer -In file included from /usr/include/c++/8/vector:69, - from ../numerical/random/discrete/../../../ext/vector.h:11, - from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, - from ../numerical/random/discrete/DiscreteGeneratorBinarySearchSorted.h:11, - from HomogeneousDirectBinarySearchSorted.cc:4: -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]': -/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 - vector<_Tp, _Alloc>:: - ^~~~~~~~~~~~~~~~~~~ -In file included from ../stochastic/State.h:347, - from ../stochastic/Solver.h:11, - from ../stochastic/Direct.h:11, - from HomogeneousDirect.ipp:11, - from HomogeneousDirectBinarySearchSorted.cc:13: -../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - State:: - ^~~~~ -../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -In file included from /usr/include/c++/8/vector:64, - from ../numerical/random/discrete/../../../ext/vector.h:11, - from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, - from ../numerical/random/discrete/DiscreteGeneratorBinarySearchSorted.h:11, - from HomogeneousDirectBinarySearchSorted.cc:4: -/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - _M_fill_insert(end(), __new_size - size(), __x); - ^~~~~~~~~~~~~~ +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + buildStateChangeVectors(reactionsBegin, reactionsEnd); + ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from ../stochastic/reactionPropensityInfluence.h:40, + from HomogeneousNextReaction.ipp:14, + from HomogeneousNextReactionHashingGenericVector.cc:13: +../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + computeReactionPropensityInfluence + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousDirectAllReactions2DSearch.cc -lrt -o HomogeneousDirectAllReactions2DSearch +In file included from HomogeneousDirectAllReactions2DSearch.cc:10: +HomogeneousDirectAllReactions.ipp: In function 'int main(int, char**)': +HomogeneousDirectAllReactions.ipp:57:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] + DiscreteUniformGenerator; + ^~~~~~~~~~~~~~~~~~~~~~~~ +In file included from HomogeneousNextReactionHashingGenericVector.cc:13: +HomogeneousNextReaction.ipp: In function 'int main(int, char**)': +HomogeneousNextReaction.ipp:89:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + stochastic::computeReactionPropensityInfluence + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + &reactionInfluence, false); + ~~~~~~~~~~~~~~~~~~~~~~~~~~ +HomogeneousNextReaction.ipp:149:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + NextReaction solver(State(initialPopulations, reactions.getBeginning(), + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + reactions.getEnd()), + ~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, - from HomogeneousDirect.ipp:11, - from HomogeneousDirectBinarySearchSorted.cc:13: + from HomogeneousDirectAllReactions.ipp:11, + from HomogeneousDirectAllReactions2DSearch.cc:10: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - buildStateChangeVectors(reactionsBegin, reactionsEnd); - ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ../numerical/random/discrete/../../../ext/vector.h:11, - from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, - from ../numerical/random/discrete/DiscreteGeneratorBinarySearchSorted.h:11, - from HomogeneousDirectBinarySearchSorted.cc:4: -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]': -/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 + from ../numerical/random/discrete/DgPmf.h:11, + from ../numerical/random/discrete/DiscreteGenerator2DSearchStatic.h:11, + from ../numerical/random/discrete/DiscreteGenerator2DSearch.h:11, + from HomogeneousDirectAllReactions2DSearch.cc:4: +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ +In file included from ../stochastic/reactionPropensityInfluence.h:40, + from HomogeneousDirectAllReactions.ipp:13, + from HomogeneousDirectAllReactions2DSearch.cc:10: +../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + computeReactionPropensityInfluence + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionLinearSearchPointer.cc -lrt -o HomogeneousNextReactionLinearSearchPointer In file included from ../stochastic/Solver.h:11, from ../stochastic/NextReaction.h:11, from HomogeneousNextReaction.ipp:11, @@ -3385,96 +3588,50 @@ State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -In file included from /usr/include/c++/8/algorithm:62, - from ../numerical/random/discrete/../../../ext/vector.h:12, - from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, - from ../numerical/random/discrete/DiscreteGeneratorBinarySearchSorted.h:11, - from HomogeneousDirectBinarySearchSorted.cc:4: -/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::ValueLess>]': -/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - __introsort_loop(_RandomAccessIterator __first, - ^~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 -/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - std::__introsort_loop(__cut, __last, __depth_limit, __comp); - ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_algo.h: In member function 'void numerical::DiscreteGeneratorBinarySearchSorted::rebuild() [with Generator = numerical::DiscreteUniformGeneratorMt19937]': -/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - std::__introsort_loop(__first, __last, - ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - std::__lg(__last - __first) * 2, - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __comp); - ~~~~~~~ -/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - std::__insertion_sort(__first, __last, __comp); - ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from ../stochastic/reactionPropensityInfluence.h:40, - from HomogeneousDirect.ipp:13, - from HomogeneousDirectBinarySearch.cc:11: -../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - computeReactionPropensityInfluence - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -In file included from ../stochastic/reactionPropensityInfluence.h:40, - from HomogeneousNextReaction.ipp:14, - from HomogeneousNextReactionLinearSearchPointer.cc:8: -../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - computeReactionPropensityInfluence - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -In file included from HomogeneousDirectBinarySearchSorted.cc:13: -HomogeneousDirect.ipp: In function 'int main(int, char**)': -HomogeneousDirect.ipp:98:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - stochastic::computeReactionPropensityInfluence - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - &reactionInfluence, true); - ~~~~~~~~~~~~~~~~~~~~~~~~~ -HomogeneousDirect.ipp:105:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - Direct solver(State(initialPopulations, reactions.getBeginning(), - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - reactions.getEnd()), - ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../numerical/random/discrete/../../../ext/vector.h:11, - from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, - from ../numerical/random/discrete/DiscreteGeneratorBinarySearchSorted.h:11, - from HomogeneousDirectBinarySearchSorted.cc:4: -/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - _M_fill_insert(end(), __new_size - size(), __x); - ^~~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + from ../numerical/random/discrete/DgPmf.h:11, + from ../numerical/random/discrete/DiscreteGenerator2DSearchStatic.h:11, + from ../numerical/random/discrete/DiscreteGenerator2DSearch.h:11, + from HomogeneousDirectAllReactions2DSearch.cc:4: +/usr/include/c++/8/bits/stl_vector.h: In function 'int main(int, char**)': +/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ -In file included from /usr/include/c++/8/algorithm:62, - from ../numerical/random/discrete/../../../ext/vector.h:12, - from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, - from ../numerical/random/discrete/DiscreteGeneratorBinarySearchSorted.h:11, - from HomogeneousDirectBinarySearchSorted.cc:4: -/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - std::__introsort_loop(__cut, __last, __depth_limit, __comp); - ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from HomogeneousDirectBinarySearch.cc:11: -HomogeneousDirect.ipp: In function 'int main(int, char**)': -HomogeneousDirect.ipp:98:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +In file included from HomogeneousDirectAllReactions2DSearch.cc:10: +HomogeneousDirectAllReactions.ipp:102:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &reactionInfluence, true); ~~~~~~~~~~~~~~~~~~~~~~~~~ -HomogeneousDirect.ipp:105:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +HomogeneousDirectAllReactions.ipp:109:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 Direct solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - reactions.getEnd()), - ~~~~~~~~~~~~~~~~~~~ + reactions.getEnd()), + ~~~~~~~~~~~~~~~~~~~ +In file included from ../stochastic/reactionPropensityInfluence.h:40, + from HomogeneousNextReaction.ipp:14, + from HomogeneousNextReactionLinearSearchPointer.cc:8: +../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + computeReactionPropensityInfluence + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsAverageElapsedTime.cc -lrt -o HomogeneousHistogramsAverageElapsedTime +In file included from ../stochastic/HistogramsAverageElapsedTime.h:12, + from HomogeneousHistogramsAverageElapsedTime.ipp:11, + from HomogeneousHistogramsAverageElapsedTime.cc:10: +../stochastic/modifiedRecordedSpecies.h: In function 'void stochastic::calculateModifiedRecordedSpecies(const _State&, const std::vector&, array::StaticArrayOfArrays*)': +../stochastic/modifiedRecordedSpecies.h:26:48: warning: typedef 'StateChangeVectors' locally defined but not used [-Wunused-local-typedefs] + typedef typename _State::StateChangeVectors StateChangeVectors; + ^~~~~~~~~~~~~~~~~~ +In file included from HomogeneousHistogramsAverageElapsedTime.cc:10: +HomogeneousHistogramsAverageElapsedTime.ipp: In function 'int main(int, char**)': +HomogeneousHistogramsAverageElapsedTime.ipp:57:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] + DiscreteUniformGenerator; + ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from HomogeneousNextReactionLinearSearchPointer.cc:8: HomogeneousNextReaction.ipp: In function 'int main(int, char**)': HomogeneousNextReaction.ipp:89:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 @@ -3489,20 +3646,6 @@ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ -g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsAverageElapsedTime.cc -lrt -o HomogeneousHistogramsAverageElapsedTime -g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionHashingVector.cc -lrt -o HomogeneousNextReactionHashingVector -In file included from ../stochastic/HistogramsAverageElapsedTime.h:12, - from HomogeneousHistogramsAverageElapsedTime.ipp:11, - from HomogeneousHistogramsAverageElapsedTime.cc:10: -../stochastic/modifiedRecordedSpecies.h: In function 'void stochastic::calculateModifiedRecordedSpecies(const _State&, const std::vector&, array::StaticArrayOfArrays*)': -../stochastic/modifiedRecordedSpecies.h:26:48: warning: typedef 'StateChangeVectors' locally defined but not used [-Wunused-local-typedefs] - typedef typename _State::StateChangeVectors StateChangeVectors; - ^~~~~~~~~~~~~~~~~~ -In file included from HomogeneousHistogramsAverageElapsedTime.cc:10: -HomogeneousHistogramsAverageElapsedTime.ipp: In function 'int main(int, char**)': -HomogeneousHistogramsAverageElapsedTime.ipp:57:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] - DiscreteUniformGenerator; - ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmf.h:11, @@ -3515,17 +3658,6 @@ ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 -g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionHashingGenericVector.cc -lrt -o HomogeneousNextReactionHashingGenericVector -In file included from ../stochastic/State.h:347, - from ../stochastic/Solver.h:11, - from ../stochastic/NextReaction.h:11, - from HomogeneousNextReaction.ipp:11, - from HomogeneousNextReactionHashingVector.cc:12: -../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - State:: - ^~~~~ -../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmf.h:11, @@ -3536,19 +3668,7 @@ /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ -In file included from ../stochastic/Solver.h:11, - from ../stochastic/NextReaction.h:11, - from HomogeneousNextReaction.ipp:11, - from HomogeneousNextReactionHashingVector.cc:12: -../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - State(const std::vector& populations, - ^~~~~ -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - buildStateChangeVectors(reactionsBegin, reactionsEnd); - ^~~~~~~~~~~~~~~~~~~~~~~ +g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionHashingVector.cc -lrt -o HomogeneousNextReactionHashingVector In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousHistogramsAverageElapsedTime.ipp:13, from HomogeneousHistogramsAverageElapsedTime.cc:10: @@ -3557,14 +3677,6 @@ computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -In file included from ../stochastic/reactionPropensityInfluence.h:40, - from HomogeneousNextReaction.ipp:14, - from HomogeneousNextReactionHashingVector.cc:12: -../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - computeReactionPropensityInfluence - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:69, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmf.h:11, @@ -3596,16 +3708,6 @@ /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ -In file included from ../stochastic/State.h:347, - from ../stochastic/Solver.h:11, - from ../stochastic/NextReaction.h:11, - from HomogeneousNextReaction.ipp:11, - from HomogeneousNextReactionHashingGenericVector.cc:13: -../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - State:: - ^~~~~ -../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from ../stochastic/HistogramsAverageBase.h:11, @@ -3620,41 +3722,16 @@ ../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from ../stochastic/Solver.h:11, +In file included from ../stochastic/State.h:347, + from ../stochastic/Solver.h:11, from ../stochastic/NextReaction.h:11, from HomogeneousNextReaction.ipp:11, - from HomogeneousNextReactionHashingGenericVector.cc:13: -../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - State(const std::vector& populations, - ^~~~~ -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - buildStateChangeVectors(reactionsBegin, reactionsEnd); - ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from ../stochastic/reactionPropensityInfluence.h:40, - from HomogeneousNextReaction.ipp:14, - from HomogeneousNextReactionHashingGenericVector.cc:13: -../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - computeReactionPropensityInfluence - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -In file included from HomogeneousNextReactionHashingVector.cc:12: -HomogeneousNextReaction.ipp: In function 'int main(int, char**)': -HomogeneousNextReaction.ipp:89:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - stochastic::computeReactionPropensityInfluence - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - &reactionInfluence, false); - ~~~~~~~~~~~~~~~~~~~~~~~~~~ -HomogeneousNextReaction.ipp:149:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - NextReaction solver(State(initialPopulations, reactions.getBeginning(), - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - reactions.getEnd()), - ~~~~~~~~~~~~~~~~~~~ + from HomogeneousNextReactionHashingVector.cc:12: +../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + State:: + ^~~~~ +../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmf.h:11, @@ -3678,7 +3755,29 @@ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ -In file included from HomogeneousNextReactionHashingGenericVector.cc:13: +In file included from ../stochastic/Solver.h:11, + from ../stochastic/NextReaction.h:11, + from HomogeneousNextReaction.ipp:11, + from HomogeneousNextReactionHashingVector.cc:12: +../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + State(const std::vector& populations, + ^~~~~ +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + buildStateChangeVectors(reactionsBegin, reactionsEnd); + ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from ../stochastic/reactionPropensityInfluence.h:40, + from HomogeneousNextReaction.ipp:14, + from HomogeneousNextReactionHashingVector.cc:12: +../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': +../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + computeReactionPropensityInfluence + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingMidpoint.cc -lrt -o HomogeneousTauLeapingMidpoint +In file included from HomogeneousNextReactionHashingVector.cc:12: HomogeneousNextReaction.ipp: In function 'int main(int, char**)': HomogeneousNextReaction.ipp:89:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence @@ -3692,13 +3791,6 @@ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ -g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousTrajectoryTreeFull.cc -lrt -o HomogeneousTrajectoryTreeFull -g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingMidpoint.cc -lrt -o HomogeneousTauLeapingMidpoint -HomogeneousTrajectoryTreeFull.cc: In function 'int main(int, char**)': -HomogeneousTrajectoryTreeFull.cc:56:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] - DiscreteUniformGenerator; - ^~~~~~~~~~~~~~~~~~~~~~~~ -g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit.cc -lrt -o HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit In file included from ../stochastic/Solver.h:11, from ../stochastic/TauLeaping.h:11, from HomogeneousTauLeaping.ipp:17, @@ -3708,57 +3800,19 @@ State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 +g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit.cc -lrt -o HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit In file included from HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit.cc:25: HomogeneousHistogramsTransientDirect.ipp: In function 'int main(int, char**)': HomogeneousHistogramsTransientDirect.ipp:49:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] DiscreteUniformGenerator; ^~~~~~~~~~~~~~~~~~~~~~~~ -In file included from ../stochastic/reactionPropensityInfluence.h:40, - from HomogeneousTrajectoryTreeFull.cc:9: -../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - computeReactionPropensityInfluence - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -In file included from /usr/include/c++/8/vector:69, - from ../stochastic/../array/SparseVector.h:19, - from ../stochastic/State.h:11, - from ../stochastic/Solver.h:11, - from ../stochastic/TrajectoryTreeFull.h:11, - from HomogeneousTrajectoryTreeFull.cc:7: -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]': -/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 - vector<_Tp, _Alloc>:: - ^~~~~~~~~~~~~~~~~~~ -In file included from ../stochastic/State.h:347, - from ../stochastic/Solver.h:11, - from ../stochastic/TrajectoryTreeFull.h:11, - from HomogeneousTrajectoryTreeFull.cc:7: -../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - State:: - ^~~~~ -../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -In file included from /usr/include/c++/8/vector:64, - from ../stochastic/../array/SparseVector.h:19, - from ../stochastic/State.h:11, - from ../stochastic/Solver.h:11, - from ../stochastic/TrajectoryTreeFull.h:11, - from HomogeneousTrajectoryTreeFull.cc:7: -/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - _M_fill_insert(end(), __new_size - size(), __x); - ^~~~~~~~~~~~~~ -In file included from ../stochastic/Solver.h:11, - from ../stochastic/TrajectoryTreeFull.h:11, - from HomogeneousTrajectoryTreeFull.cc:7: -../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - State(const std::vector& populations, - ^~~~~ -../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 -../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - buildStateChangeVectors(reactionsBegin, reactionsEnd); - ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from HomogeneousTauLeapingMidpoint.cc:8: +HomogeneousTauLeaping.ipp: In function 'int main(int, char**)': +HomogeneousTauLeaping.ipp:83:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 + TauLeaping solver(State(initialPopulations, reactions.getBeginning(), + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + reactions.getEnd()), + ~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousHistogramsTransientDirect.ipp:7, from HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit.cc:25: @@ -3779,13 +3833,6 @@ /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ -In file included from HomogeneousTauLeapingMidpoint.cc:8: -HomogeneousTauLeaping.ipp: In function 'int main(int, char**)': -HomogeneousTauLeaping.ipp:83:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - TauLeaping solver(State(initialPopulations, reactions.getBeginning(), - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - reactions.getEnd()), - ~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/State.h:347, from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, @@ -3808,19 +3855,6 @@ /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ -HomogeneousTrajectoryTreeFull.cc: In function 'int main(int, char**)': -HomogeneousTrajectoryTreeFull.cc:98:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - stochastic::computeReactionPropensityInfluence - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - &reactionInfluence, true); - ~~~~~~~~~~~~~~~~~~~~~~~~~ -HomogeneousTrajectoryTreeFull.cc:104:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - Solver solver(State(initialPopulations, reactions.getBeginning(), - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - reactions.getEnd()), - ~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from ../stochastic/HistogramsBase.h:11, @@ -3849,7 +3883,7 @@ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ mkdir -p ../../solvers -mv HomogeneousTauLeapingImplicitFixedEuler HomogeneousHistogramsTransientDirectTreeNormalApproximation HomogeneousFirstReactionAbsoluteTime HomogeneousOdeReactionFixedForward HomogeneousNextReactionHashingGenericList HomogeneousOdeReactionFixedMidpoint HomogeneousHybridDirectTauLeapingMidpoint HomogeneousTauLeapingFixedRungeKutta4 HomogeneousNextReactionBinaryHeapPair HomogeneousDirectLinearSearch HomogeneousTauLeapingRungeKutta4 HomogeneousTauLeapingForwardNoCorrection HomogeneousHybridDirectTauLeapingForward HomogeneousFirstReaction HomogeneousTauLeapingFixedMidpoint HomogeneousDirect2DSearchBubbleSort HomogeneousNextReactionLinearSearch HomogeneousHistogramsAverageAps HomogeneousHistogramFinalHypoexponentialDirect2DSearch HomogeneousTauLeapingSalLinear HomogeneousDirectCompositionRejection HomogeneousNextReactionPartitionSizeAdaptive HomogeneousDirectLinearSearchDelayedUpdate HomogeneousTauLeapingMidpointNoCorrection HomogeneousDirectLinearSearchBubbleSort HomogeneousTauLeapingFixedForward HomogeneousDirectAllReactions2DSearch HomogeneousHistogramsTransientDirectTreeExponentialLast HomogeneousNextReactionPartitionPropensities HomogeneousDirectRejectionBinsSplitting HomogeneousDirect2DSearchSorted HomogeneousNextReactionBinaryHeapGibsonBruck HomogeneousNextReactionHashing HomogeneousTauLeapingSalFixedLinear HomogeneousTauLeapingRungeKutta4NoCorrection HomogeneousHybridDirectTauLeapingRungeKutta4 HomogeneousNextReactionPartitionCostAdaptive HomogeneousHistogramsTransientDirectTreeExponentialLimit HomogeneousDirectBinarySearchRecursiveCdf HomogeneousNextReactionPartitionFixedSize HomogeneousOdeReactionFixedRungeKuttaCashKarp HomogeneousHistogramsDirectTree HomogeneousDirect2DSearch HomogeneousNextReactionLinearSearchUnrolled HomogeneousHistogramsMultiTimeDirect2DSearch HomogeneousNextReactionBinaryHeapPointer HomogeneousTauLeapingForward HomogeneousOdeReactionFixedRungeKutta4 HomogeneousOdeReactionRungeKuttaCashKarp HomogeneousFirstReactionInfluence HomogeneousDirectLinearSearchSorted HomogeneousHistogramsAverage HomogeneousHistogramsDirect2DSearch HomogeneousDirectBinarySearchSorted HomogeneousDirectBinarySearch HomogeneousNextReactionLinearSearchPointer HomogeneousHistogramsAverageElapsedTime HomogeneousNextReactionHashingVector HomogeneousNextReactionHashingGenericVector HomogeneousTrajectoryTreeFull HomogeneousTauLeapingMidpoint HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit ../../solvers +mv HomogeneousTauLeapingImplicitFixedEuler HomogeneousDirect2DSearchSorted HomogeneousHistogramsTransientDirectTreeNormalApproximation HomogeneousTauLeapingSalLinear HomogeneousFirstReactionAbsoluteTime HomogeneousOdeReactionFixedForward HomogeneousNextReactionHashingGenericList HomogeneousOdeReactionFixedMidpoint HomogeneousTauLeapingFixedRungeKutta4 HomogeneousNextReactionBinaryHeapPair HomogeneousDirectLinearSearch HomogeneousNextReactionPartitionSizeAdaptive HomogeneousTauLeapingForwardNoCorrection HomogeneousHybridDirectTauLeapingForward HomogeneousFirstReaction HomogeneousTauLeapingFixedMidpoint HomogeneousDirectLinearSearchSorted HomogeneousDirect2DSearchBubbleSort HomogeneousNextReactionLinearSearch HomogeneousNextReactionPartitionPropensities HomogeneousHistogramsAverageAps HomogeneousHistogramFinalHypoexponentialDirect2DSearch HomogeneousTrajectoryTreeFull HomogeneousOdeReactionRungeKuttaCashKarp HomogeneousTauLeapingMidpointNoCorrection HomogeneousDirectLinearSearchBubbleSort HomogeneousTauLeapingFixedForward HomogeneousHybridDirectTauLeapingMidpoint HomogeneousHistogramsTransientDirectTreeExponentialLast HomogeneousNextReactionBinaryHeapPointer HomogeneousDirectCompositionRejection HomogeneousNextReactionBinaryHeapGibsonBruck HomogeneousTauLeapingRungeKutta4 HomogeneousNextReactionHashing HomogeneousDirectBinarySearchSorted HomogeneousTauLeapingSalFixedLinear HomogeneousDirectRejectionBinsSplitting HomogeneousTauLeapingRungeKutta4NoCorrection HomogeneousHybridDirectTauLeapingRungeKutta4 HomogeneousNextReactionPartitionCostAdaptive HomogeneousHistogramsTransientDirectTreeExponentialLimit HomogeneousDirectBinarySearchRecursiveCdf HomogeneousNextReactionPartitionFixedSize HomogeneousOdeReactionFixedRungeKuttaCashKarp HomogeneousDirectLinearSearchDelayedUpdate HomogeneousHistogramsDirectTree HomogeneousDirect2DSearch HomogeneousNextReactionLinearSearchUnrolled HomogeneousHistogramsMultiTimeDirect2DSearch HomogeneousTauLeapingForward HomogeneousOdeReactionFixedRungeKutta4 HomogeneousFirstReactionInfluence HomogeneousDirectBinarySearch HomogeneousHistogramsAverage HomogeneousHistogramsDirect2DSearch HomogeneousNextReactionHashingGenericVector HomogeneousDirectAllReactions2DSearch HomogeneousNextReactionLinearSearchPointer HomogeneousHistogramsAverageElapsedTime HomogeneousNextReactionHashingVector HomogeneousTauLeapingMidpoint HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit ../../solvers make[3]: Leaving directory '/build/cain-1.10+dfsg/src/solvers' make[2]: Leaving directory '/build/cain-1.10+dfsg' make[1]: Leaving directory '/build/cain-1.10+dfsg' @@ -3896,72 +3930,72 @@ dh_strip dh_makeshlibs dh_shlibdeps +dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousTauLeapingRungeKutta4 contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousOdeReactionFixedMidpoint contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousDirectBinarySearchRecursiveCdf contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousHybridDirectTauLeapingMidpoint contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousHistogramsAverage contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousNextReactionBinaryHeapPointer contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousHistogramsDirect2DSearch contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousDirectLinearSearchSorted contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousOdeReactionRungeKuttaCashKarp contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousNextReactionPartitionPropensities contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousHybridDirectTauLeapingForward contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousNextReactionPartitionCostAdaptive contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousHistogramsTransientDirectTreeExponentialLimit contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousHistogramsTransientDirectTreeExponentialLast contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousDirect2DSearchBubbleSort contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousDirectBinarySearchSorted contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousNextReactionPartitionFixedSize contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousDirectAllReactions2DSearch contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousNextReactionHashing contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousNextReactionLinearSearch contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousHistogramFinalHypoexponentialDirect2DSearch contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousNextReactionHashingGenericList contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousHistogramsMultiTimeDirect2DSearch contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousDirect2DSearchSorted contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousDirect2DSearch contains an unresolvable reference to symbol 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probably a plugin -dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousDirectLinearSearchSorted contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousNextReactionBinaryHeapPointer contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousTauLeapingRungeKutta4 contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousNextReactionBinaryHeapPair contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousDirectLinearSearchBubbleSort contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousHistogramsTransientDirectTreeNormalApproximation contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousOdeReactionRungeKuttaCashKarp contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousHistogramsAverage contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousTauLeapingFixedForward contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousTauLeapingFixedMidpoint contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousTauLeapingImplicitFixedEuler contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousOdeReactionFixedRungeKutta4 contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousDirect2DSearch contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousNextReactionLinearSearchUnrolled contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousNextReactionPartitionSizeAdaptive contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousTauLeapingMidpoint contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousOdeReactionFixedRungeKuttaCashKarp contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousTrajectoryTreeFull contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousDirect2DSearchBubbleSort contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousNextReactionPartitionPropensities contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousHybridDirectTauLeapingMidpoint contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousTauLeapingForward contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousTauLeapingForwardNoCorrection contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousHybridDirectTauLeapingRungeKutta4 contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousTauLeapingSalFixedLinear contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousDirectLinearSearch contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousOdeReactionFixedMidpoint contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousTauLeapingMidpoint contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousTauLeapingFixedForward contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousFirstReaction contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousOdeReactionFixedForward contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousTauLeapingImplicitFixedEuler contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousHistogramsMultiTimeDirect2DSearch contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb dh_gencontrol -dpkg-gencontrol: warning: Depends field of package cain: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package cain-examples: substitution variable ${shlibs:Depends} used, but is not defined +dpkg-gencontrol: warning: Depends field of package cain: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'cain-solvers-dbgsym' in '../cain-solvers-dbgsym_1.10+dfsg-3_armhf.deb'. @@ -3974,12 +4008,14 @@ dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/30594/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/30594/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/12561 and its subdirectories -I: Current time: Sat May 30 09:59:51 -12 2020 -I: pbuilder-time-stamp: 1590875991 +I: removing directory /srv/workspace/pbuilder/30594 and its subdirectories +I: Current time: Sun May 31 15:41:24 +14 2020 +I: pbuilder-time-stamp: 1590889284