Diff of the two buildlogs: -- --- b1/build.log 2020-06-17 02:23:56.611346625 +0000 +++ b2/build.log 2020-06-17 03:34:16.089147625 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Jun 16 13:24:57 -12 2020 -I: pbuilder-time-stamp: 1592357097 +I: Current time: Wed Jun 17 16:28:00 +14 2020 +I: pbuilder-time-stamp: 1592360880 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Tue Jul 17 21:03:04 2018 -12 +gpgv: Signature made Wed Jul 18 23:03:04 2018 +14 gpgv: using RSA key 9CA877749FAB2E4FA96862ECDC686A27B43481B0 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./avogadro_1.2.0-4.dsc @@ -34,136 +34,170 @@ dpkg-source: info: applying libsymspg.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/19330/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/10471/tmp/hooks/D01_modify_environment starting +debug: Running on jtk1b. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/10471/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/10471/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.0.3(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='0d669c8f88264d8c8fd3453dcc84373d' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='19330' - PS1='# ' - PS2='> ' + INVOCATION_ID=44f9f4616e554904914fb6b5e321d640 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=10471 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.XXxGWuv71R/pbuilderrc_St1N --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.XXxGWuv71R/b1 --logfile b1/build.log avogadro_1.2.0-4.dsc' - SUDO_GID='114' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:8000/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.XXxGWuv71R/pbuilderrc_8Aou --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.XXxGWuv71R/b2 --logfile b2/build.log avogadro_1.2.0-4.dsc' + SUDO_GID=114 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:8000/ I: uname -a - Linux jtx1b 4.19.0-9-arm64 #1 SMP Debian 4.19.118-2+deb10u1 (2020-06-07) aarch64 GNU/Linux + Linux i-capture-the-hostname 4.19.0-9-armmp-lpae #1 SMP Debian 4.19.118-2+deb10u1 (2020-06-07) armv7l GNU/Linux I: ls -l /bin total 3328 - -rwxr-xr-x 1 root root 767656 Apr 17 2019 bash - -rwxr-xr-x 3 root root 26052 Jul 10 2019 bunzip2 - -rwxr-xr-x 3 root root 26052 Jul 10 2019 bzcat - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep - -rwxr-xr-x 3 root root 26052 Jul 10 2019 bzip2 - -rwxr-xr-x 1 root root 9636 Jul 10 2019 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore - -rwxr-xr-x 1 root root 22432 Feb 28 2019 cat - -rwxr-xr-x 1 root root 38868 Feb 28 2019 chgrp - -rwxr-xr-x 1 root root 38836 Feb 28 2019 chmod - -rwxr-xr-x 1 root root 42972 Feb 28 2019 chown - -rwxr-xr-x 1 root root 88376 Feb 28 2019 cp - -rwxr-xr-x 1 root root 75516 Jan 17 2019 dash - -rwxr-xr-x 1 root root 71648 Feb 28 2019 date - -rwxr-xr-x 1 root root 51212 Feb 28 2019 dd - -rwxr-xr-x 1 root root 55672 Feb 28 2019 df - -rwxr-xr-x 1 root root 88444 Feb 28 2019 dir - -rwxr-xr-x 1 root root 54872 Jan 9 2019 dmesg - lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname - -rwxr-xr-x 1 root root 22364 Feb 28 2019 echo - -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep - -rwxr-xr-x 1 root root 18260 Feb 28 2019 false - -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep - -rwxr-xr-x 1 root root 47356 Jan 9 2019 findmnt - -rwsr-xr-x 1 root root 21980 Apr 22 07:38 fusermount - -rwxr-xr-x 1 root root 124508 Jan 7 2019 grep - -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip - -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe - -rwxr-xr-x 1 root root 64232 Jan 5 2019 gzip - -rwxr-xr-x 1 root root 13784 Sep 26 2018 hostname - -rwxr-xr-x 1 root root 43044 Feb 28 2019 ln - -rwxr-xr-x 1 root root 34932 Jul 26 2018 login - -rwxr-xr-x 1 root root 88444 Feb 28 2019 ls - -rwxr-xr-x 1 root root 67036 Jan 9 2019 lsblk - -rwxr-xr-x 1 root root 47168 Feb 28 2019 mkdir - -rwxr-xr-x 1 root root 43040 Feb 28 2019 mknod - -rwxr-xr-x 1 root root 26552 Feb 28 2019 mktemp - -rwxr-xr-x 1 root root 26024 Jan 9 2019 more - -rwsr-xr-x 1 root root 34268 Jan 9 2019 mount - -rwxr-xr-x 1 root root 9688 Jan 9 2019 mountpoint - -rwxr-xr-x 1 root root 84284 Feb 28 2019 mv - lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 22416 Feb 28 2019 pwd - lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash - -rwxr-xr-x 1 root root 26504 Feb 28 2019 readlink - -rwxr-xr-x 1 root root 42968 Feb 28 2019 rm - -rwxr-xr-x 1 root root 26496 Feb 28 2019 rmdir - -rwxr-xr-x 1 root root 14136 Jan 21 2019 run-parts - -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jun 15 20:25 sh -> dash - -rwxr-xr-x 1 root root 22384 Feb 28 2019 sleep - -rwxr-xr-x 1 root root 51124 Feb 28 2019 stty - -rwsr-xr-x 1 root root 42472 Jan 9 2019 su - -rwxr-xr-x 1 root root 22392 Feb 28 2019 sync - -rwxr-xr-x 1 root root 283324 Apr 23 2019 tar - -rwxr-xr-x 1 root root 9808 Jan 21 2019 tempfile - -rwxr-xr-x 1 root root 63464 Feb 28 2019 touch - -rwxr-xr-x 1 root root 18260 Feb 28 2019 true - -rwxr-xr-x 1 root root 9636 Apr 22 07:38 ulockmgr_server - -rwsr-xr-x 1 root root 21976 Jan 9 2019 umount - -rwxr-xr-x 1 root root 22380 Feb 28 2019 uname - -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress - -rwxr-xr-x 1 root root 88444 Feb 28 2019 vdir - -rwxr-xr-x 1 root root 21980 Jan 9 2019 wdctl - -rwxr-xr-x 1 root root 946 Jan 21 2019 which - lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat - -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp - -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff - -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep - -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep - -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce - -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep - -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless - -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore - -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew -I: user script /srv/workspace/pbuilder/19330/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 767656 Apr 18 2019 bash + -rwxr-xr-x 3 root root 26052 Jul 11 2019 bunzip2 + -rwxr-xr-x 3 root root 26052 Jul 11 2019 bzcat + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep + -rwxr-xr-x 3 root root 26052 Jul 11 2019 bzip2 + -rwxr-xr-x 1 root root 9636 Jul 11 2019 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore + -rwxr-xr-x 1 root root 22432 Mar 1 2019 cat + -rwxr-xr-x 1 root root 38868 Mar 1 2019 chgrp + -rwxr-xr-x 1 root root 38836 Mar 1 2019 chmod + -rwxr-xr-x 1 root root 42972 Mar 1 2019 chown + -rwxr-xr-x 1 root root 88376 Mar 1 2019 cp + -rwxr-xr-x 1 root root 75516 Jan 18 2019 dash + -rwxr-xr-x 1 root root 71648 Mar 1 2019 date + -rwxr-xr-x 1 root root 51212 Mar 1 2019 dd + -rwxr-xr-x 1 root root 55672 Mar 1 2019 df + -rwxr-xr-x 1 root root 88444 Mar 1 2019 dir + -rwxr-xr-x 1 root root 54872 Jan 10 2019 dmesg + lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname + -rwxr-xr-x 1 root root 22364 Mar 1 2019 echo + -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep + -rwxr-xr-x 1 root root 18260 Mar 1 2019 false + -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep + -rwxr-xr-x 1 root root 47356 Jan 10 2019 findmnt + -rwsr-xr-x 1 root root 21980 Apr 23 09:38 fusermount + -rwxr-xr-x 1 root root 124508 Jan 8 2019 grep + -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip + -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe + -rwxr-xr-x 1 root root 64232 Jan 6 2019 gzip + -rwxr-xr-x 1 root root 13784 Sep 27 2018 hostname + -rwxr-xr-x 1 root root 43044 Mar 1 2019 ln + -rwxr-xr-x 1 root root 34932 Jul 27 2018 login + -rwxr-xr-x 1 root root 88444 Mar 1 2019 ls + -rwxr-xr-x 1 root root 67036 Jan 10 2019 lsblk + -rwxr-xr-x 1 root root 47168 Mar 1 2019 mkdir + -rwxr-xr-x 1 root root 43040 Mar 1 2019 mknod + -rwxr-xr-x 1 root root 26552 Mar 1 2019 mktemp + -rwxr-xr-x 1 root root 26024 Jan 10 2019 more + -rwsr-xr-x 1 root root 34268 Jan 10 2019 mount + -rwxr-xr-x 1 root root 9688 Jan 10 2019 mountpoint + -rwxr-xr-x 1 root root 84284 Mar 1 2019 mv + lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 22416 Mar 1 2019 pwd + lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash + -rwxr-xr-x 1 root root 26504 Mar 1 2019 readlink + -rwxr-xr-x 1 root root 42968 Mar 1 2019 rm + -rwxr-xr-x 1 root root 26496 Mar 1 2019 rmdir + -rwxr-xr-x 1 root root 14136 Jan 22 2019 run-parts + -rwxr-xr-x 1 root root 76012 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Jun 17 16:28 sh -> bash + lrwxrwxrwx 1 root root 4 Jun 15 22:27 sh.distrib -> dash + -rwxr-xr-x 1 root root 22384 Mar 1 2019 sleep + -rwxr-xr-x 1 root root 51124 Mar 1 2019 stty + -rwsr-xr-x 1 root root 42472 Jan 10 2019 su + -rwxr-xr-x 1 root root 22392 Mar 1 2019 sync + -rwxr-xr-x 1 root root 283324 Apr 24 2019 tar + -rwxr-xr-x 1 root root 9808 Jan 22 2019 tempfile + -rwxr-xr-x 1 root root 63464 Mar 1 2019 touch + -rwxr-xr-x 1 root root 18260 Mar 1 2019 true + -rwxr-xr-x 1 root root 9636 Apr 23 09:38 ulockmgr_server + -rwsr-xr-x 1 root root 21976 Jan 10 2019 umount + -rwxr-xr-x 1 root root 22380 Mar 1 2019 uname + -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress + -rwxr-xr-x 1 root root 88444 Mar 1 2019 vdir + -rwxr-xr-x 1 root root 21980 Jan 10 2019 wdctl + -rwxr-xr-x 1 root root 946 Jan 22 2019 which + lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat + -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp + -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff + -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep + -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep + -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce + -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep + -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless + -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore + -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew +I: user script /srv/workspace/pbuilder/10471/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -487,7 +521,7 @@ Get: 252 http://deb.debian.org/debian buster/main armhf python-sip-dev armhf 4.19.14+dfsg-2 [116 kB] Get: 253 http://deb.debian.org/debian buster/main armhf qt4-dev-tools armhf 4:4.8.7+dfsg-18 [3744 kB] Get: 254 http://deb.debian.org/debian buster/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [207 kB] -Fetched 186 MB in 28s (6550 kB/s) +Fetched 186 MB in 1min 15s (2465 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18932 files and directories currently installed.) @@ -1538,7 +1572,7 @@ fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/avogadro-1.2.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/avogadro-1.2.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package avogadro dpkg-buildpackage: info: source version 1.2.0-4 dpkg-buildpackage: info: source distribution unstable @@ -1724,7 +1758,7 @@ -- Build files have been written to: /build/avogadro-1.2.0/obj-arm-linux-gnueabihf make[1]: Leaving directory '/build/avogadro-1.2.0' dh_auto_build - cd obj-arm-linux-gnueabihf && make -j3 + cd obj-arm-linux-gnueabihf && make -j4 make[1]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/avogadro-1.2.0 -B/build/avogadro-1.2.0/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/CMakeFiles /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks @@ -1733,20 +1767,35 @@ make -f libavogadro/src/colors/CMakeFiles/elementcolor.dir/build.make libavogadro/src/colors/CMakeFiles/elementcolor.dir/depend make -f libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build.make libavogadro/src/engines/CMakeFiles/bsdyengine.dir/depend make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/depend +make -f libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build.make libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry/libmsym /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 1%] Generating ui_bsdysettingswidget.h -[ 1%] Generating moc_elementcolor.cxx +[ 0%] Generating ui_bsdysettingswidget.h +[ 0%] Generating moc_elementcolor.cxx [ 1%] Generating qrc_navigatetool.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/moc_elementcolor.cxx_parameters cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/ui_bsdysettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/bsdysettingswidget.ui cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/lib/arm-linux-gnueabihf/qt4/bin/rcc -name navigatetool -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/qrc_navigatetool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/navigatetool.qrc -[ 1%] Generating moc_navigatetool.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/moc_navigatetool.cxx_parameters +Scanning dependencies of target msym +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build.make libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' [ 2%] Generating moc_bsdyengine.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_bsdyengine.cxx_parameters +[ 2%] Generating moc_navigatetool.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/CMakeFiles/elementcolor.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_bsdyengine.cxx_parameters +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/moc_navigatetool.cxx_parameters +[ 2%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/character_table.c.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/character_table.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.c +In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33, + from /usr/include/stdlib.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.c:11: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ Scanning dependencies of target elementcolor make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/colors/CMakeFiles/elementcolor.dir/build.make libavogadro/src/colors/CMakeFiles/elementcolor.dir/build @@ -1754,7 +1803,6 @@ [ 2%] Building CXX object libavogadro/src/colors/CMakeFiles/elementcolor.dir/elementcolor.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/elementcolor.dir/elementcolor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/colors/elementcolor.cpp cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/bsdyengine.dir/DependInfo.cmake --color= -[ 2%] Generating ui_navigatesettingswidget.h In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -1771,20 +1819,27 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 2%] Generating ui_navigatesettingswidget.h cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/ui_navigatesettingswidget.h /build/avogadro-1.2.0/libavogadro/src/tools/navigatesettingswidget.ui cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/CMakeFiles/navigatetool.dir/DependInfo.cmake --color= +[ 2%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/context.c.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/context.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/context.c +In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33, + from /usr/include/stdlib.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/context.c:11: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ Scanning dependencies of target bsdyengine make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build.make libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 2%] Building CXX object libavogadro/src/engines/CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o Scanning dependencies of target navigatetool +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.cpp make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 2%] Building CXX object libavogadro/src/engines/CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.cpp -[ 2%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/navigatetool.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/navigatetool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/navigatetool.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -1801,6 +1856,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 2%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/navigatetool.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/navigatetool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/navigatetool.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -1818,65 +1875,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 2%] Building CXX object libavogadro/src/colors/CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/moc_elementcolor.cxx -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/../../../../libavogadro/src/colors/elementcolor.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/moc_elementcolor.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 2%] Linking CXX static library elementcolor.a -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/bin/cmake -P CMakeFiles/elementcolor.dir/cmake_clean_target.cmake -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/elementcolor.dir/link.txt --verbose=1 -/usr/bin/ar qc elementcolor.a CMakeFiles/elementcolor.dir/elementcolor.cpp.o CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o -/usr/bin/ranlib elementcolor.a -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 2%] Built target elementcolor -[ 2%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/eyecandy.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/eyecandy.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/new:39, - from /usr/include/eigen3/Eigen/Core:82, - from /build/avogadro-1.2.0/libavogadro/src/tools/eyecandy.h:30, - from /build/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp:26: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -make -f libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build.make libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry/libmsym /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/DependInfo.cmake --color= -Scanning dependencies of target msym -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build.make libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 2%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/character_table.c.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/character_table.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.c -In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33, - from /usr/include/stdlib.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.c:11: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 2%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/context.c.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/context.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/context.c -In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33, - from /usr/include/stdlib.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/context.c:11: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ [ 2%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/elements.c.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/elements.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/elements.c In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33, @@ -1885,24 +1883,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 2%] Building CXX object libavogadro/src/engines/CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_bsdyengine.cxx -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/../../../../libavogadro/src/engines/bsdyengine.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_bsdyengine.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ [ 2%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/equivalence_set.c.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/equivalence_set.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/equivalence_set.c In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33, @@ -1943,21 +1923,32 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 3%] Building CXX object libavogadro/src/colors/CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/moc_elementcolor.cxx [ 3%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/orbital.c.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/orbital.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.c +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/../../../../libavogadro/src/colors/elementcolor.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/moc_elementcolor.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.c:11: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 3%] Linking CXX static library bsdyengine.a -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/cmake -P CMakeFiles/bsdyengine.dir/cmake_clean_target.cmake -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/bsdyengine.dir/link.txt --verbose=1 -/usr/bin/ar qc bsdyengine.a CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o -/usr/bin/ranlib bsdyengine.a -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 3%] Built target bsdyengine [ 3%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/permutation.c.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/permutation.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/permutation.c In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33, @@ -1966,23 +1957,30 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 3%] Linking CXX static library elementcolor.a +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/bin/cmake -P CMakeFiles/elementcolor.dir/cmake_clean_target.cmake +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/elementcolor.dir/link.txt --verbose=1 +/usr/bin/ar qc elementcolor.a CMakeFiles/elementcolor.dir/elementcolor.cpp.o CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o +/usr/bin/ranlib elementcolor.a +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 3%] Built target elementcolor make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 3%] Generating moc_slaterset.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube/moc_slaterset.cxx_parameters -[ 3%] Generating moc_basisset.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube/moc_basisset.cxx_parameters -[ 3%] Generating moc_gaussianset.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube/moc_gaussianset.cxx_parameters -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/DependInfo.cmake --color= [ 3%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/point_group.c.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/point_group.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/point_group.c +[ 3%] Generating moc_slaterset.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube/moc_slaterset.cxx_parameters In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33, from /usr/include/math.h:27, from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/point_group.c:12: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 3%] Generating moc_basisset.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube/moc_basisset.cxx_parameters +[ 3%] Generating moc_gaussianset.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube/moc_gaussianset.cxx_parameters +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/DependInfo.cmake --color= Scanning dependencies of target OpenQube make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build @@ -2030,6 +2028,35 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 3%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/eyecandy.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/eyecandy.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/new:39, + from /usr/include/eigen3/Eigen/Core:82, + from /build/avogadro-1.2.0/libavogadro/src/tools/eyecandy.h:30, + from /build/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp:26: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 3%] Building CXX object libavogadro/src/engines/CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_bsdyengine.cxx +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/../../../../libavogadro/src/engines/bsdyengine.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_bsdyengine.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ [ 3%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/symop.c.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/symop.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symop.c In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33, @@ -2045,20 +2072,6 @@ /usr/bin/ranlib libmsym.a make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' [ 3%] Built target msym -[ 3%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/basissetloader.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/basissetloader.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basissetloader.cpp -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/new:39, - from /usr/include/eigen3/Eigen/Core:82, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:24, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianset.h:23, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basissetloader.cpp:19: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ make -f libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build.make libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/tubegen /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/DependInfo.cmake --color= @@ -2072,29 +2085,31 @@ cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -w -o CMakeFiles/tubegen.dir/Core3DMath.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/Core3DMath.c [ 3%] Building C object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/eprintf.c.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -w -o CMakeFiles/tubegen.dir/eprintf.c.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/eprintf.c -[ 3%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/ANSR.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/ANSR.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/ANSR.cpp -[ 3%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/moc_navigatetool.cxx -[ 3%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/Cell.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/Cell.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/Cell.cpp +[ 3%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/basissetloader.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/basissetloader.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basissetloader.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/../../../../libavogadro/src/tools/navigatetool.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/moc_navigatetool.cxx:9: + from /usr/include/c++/8/new:39, + from /usr/include/eigen3/Eigen/Core:82, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:24, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianset.h:23, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basissetloader.cpp:19: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 3%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/ANSR.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/ANSR.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/ANSR.cpp +[ 3%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/Cell.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/Cell.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/Cell.cpp +[ 3%] Linking CXX static library bsdyengine.a +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/cmake -P CMakeFiles/bsdyengine.dir/cmake_clean_target.cmake +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/bsdyengine.dir/link.txt --verbose=1 +/usr/bin/ar qc bsdyengine.a CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o +/usr/bin/ranlib bsdyengine.a +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 3%] Built target bsdyengine [ 3%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/cube.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/cube.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/cube.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, @@ -2108,101 +2123,7 @@ ^~~~~~~ [ 4%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/CrystalCell.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/CrystalCell.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/CrystalCell.cpp -[ 4%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/diamond.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/diamond.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/diamond.cpp -[ 4%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/qrc_navigatetool.cxx -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/qrc_navigatetool.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 4%] Linking CXX static library navigatetool.a -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/cmake -P CMakeFiles/navigatetool.dir/cmake_clean_target.cmake -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/navigatetool.dir/link.txt --verbose=1 -/usr/bin/ar qc navigatetool.a CMakeFiles/navigatetool.dir/navigatetool.cpp.o CMakeFiles/navigatetool.dir/eyecandy.cpp.o CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o -/usr/bin/ranlib navigatetool.a -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 4%] Built target navigatetool -make -f libavogadro/src/CMakeFiles/avogadro.dir/build.make libavogadro/src/CMakeFiles/avogadro.dir/depend -[ 4%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/fcc.cpp.o -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/fcc.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/fcc.cpp -[ 4%] Generating qrc_pythontool.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/rcc -name pythontool -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/qrc_pythontool.cxx /build/avogadro-1.2.0/libavogadro/src/pythontool.qrc -[ 4%] Generating moc_animation.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_animation.cxx_parameters -[ 4%] Generating moc_atom.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_atom.cxx_parameters -[ 5%] Generating moc_bond.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_bond.cxx_parameters -[ 5%] Generating moc_color.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_color.cxx_parameters -[ 5%] Generating moc_colorbutton.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_colorbutton.cxx_parameters -[ 5%] Generating moc_cube.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_cube.cxx_parameters -[ 5%] Generating moc_dockextension.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_dockextension.cxx_parameters -[ 5%] Generating moc_dockwidget.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_dockwidget.cxx_parameters -[ 5%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/graphite.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/graphite.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/graphite.cpp -[ 5%] Generating moc_elementdetail_p.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_elementdetail_p.cxx_parameters -[ 5%] Generating moc_elementtranslator.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_elementtranslator.cxx_parameters -[ 5%] Generating moc_engine.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_engine.cxx_parameters -[ 6%] Generating moc_extension.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_extension.cxx_parameters -[ 6%] Generating moc_fragment.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_fragment.cxx_parameters -[ 6%] Generating moc_glwidget.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_glwidget.cxx_parameters -[ 6%] Generating moc_mesh.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_mesh.cxx_parameters -[ 6%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/TubeGen.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/TubeGen.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/TubeGen.cpp -[ 6%] Generating moc_meshgenerator.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_meshgenerator.cxx_parameters -[ 6%] Generating moc_molecule.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_molecule.cxx_parameters -[ 6%] Generating moc_moleculefile.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_moleculefile.cxx_parameters -[ 6%] Generating moc_periodictablescene_p.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_periodictablescene_p.cxx_parameters -[ 6%] Generating moc_periodictableview.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_periodictableview.cxx_parameters -[ 7%] Generating moc_plotwidget.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_plotwidget.cxx_parameters -[ 7%] Generating moc_plugin.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_plugin.cxx_parameters -[ 7%] Generating moc_pluginmanager.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_pluginmanager.cxx_parameters -[ 7%] Generating moc_primitive.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_primitive.cxx_parameters -[ 7%] Generating moc_protein.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_protein.cxx_parameters -[ 7%] Generating moc_readfilethread_p.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_readfilethread_p.cxx_parameters -[ 7%] Generating moc_residue.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_residue.cxx_parameters -[ 7%] Generating moc_textmatrixeditor.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_textmatrixeditor.cxx_parameters -[ 7%] Generating moc_tool.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_tool.cxx_parameters -[ 7%] Generating moc_toolgroup.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_toolgroup.cxx_parameters -[ 8%] Generating moc_zmatrix.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_zmatrix.cxx_parameters -[ 8%] Generating moc_pythonengine_p.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_pythonengine_p.cxx_parameters -[ 8%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gamessukout.cpp.o +[ 4%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gamessukout.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/gamessukout.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessukout.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -2217,28 +2138,31 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 8%] Generating moc_pythonerror.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_pythonerror.cxx_parameters -[ 8%] Generating moc_pythonextension_p.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_pythonextension_p.cxx_parameters -[ 8%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/TubuleBasis.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/TubuleBasis.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/TubuleBasis.cpp -[ 8%] Generating moc_pythontool_p.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_pythontool_p.cxx_parameters -[ 8%] Generating libavogadro_ar.qm -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/ar.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ar.ts -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ar.ts -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ar.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ar.qm -[ 8%] Generating libavogadro_bg.qm -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/bg.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_bg.ts -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_bg.ts -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_bg.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_bg.qm -[ 8%] Generating libavogadro_bs.qm -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/bs.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_bs.ts -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_bs.ts -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +[ 4%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/diamond.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/diamond.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/diamond.cpp +[ 4%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/fcc.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/fcc.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/fcc.cpp +[ 4%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/graphite.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/graphite.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/graphite.cpp +[ 4%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/TubeGen.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/TubeGen.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/TubeGen.cpp +[ 4%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gamessus.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/gamessus.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessus.cpp +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qiodevice.h:46, + from /usr/include/qt4/QtCore/QIODevice:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessus.h:22, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessus.cpp:17: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ In file included from /usr/include/c++/8/vector:69, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:26, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, @@ -2261,17 +2185,8 @@ ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:672:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc:672:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -[ 8%] Linking CXX static library libtubegen.a -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cmake -P CMakeFiles/tubegen.dir/cmake_clean_target.cmake -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cmake -E cmake_link_script CMakeFiles/tubegen.dir/link.txt --verbose=1 -/usr/bin/ar qc libtubegen.a CMakeFiles/tubegen.dir/Bitmap.c.o CMakeFiles/tubegen.dir/Core3DMath.c.o CMakeFiles/tubegen.dir/eprintf.c.o CMakeFiles/tubegen.dir/ANSR.cpp.o CMakeFiles/tubegen.dir/Cell.cpp.o CMakeFiles/tubegen.dir/CrystalCell.cpp.o CMakeFiles/tubegen.dir/diamond.cpp.o CMakeFiles/tubegen.dir/fcc.cpp.o CMakeFiles/tubegen.dir/graphite.cpp.o CMakeFiles/tubegen.dir/TubeGen.cpp.o CMakeFiles/tubegen.dir/TubuleBasis.cpp.o -/usr/bin/ranlib libtubegen.a -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 8%] Built target tubegen -[ 8%] Generating libavogadro_ca.qm -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/ca.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ca.ts -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ca.ts -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +[ 4%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/TubuleBasis.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/TubuleBasis.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/TubuleBasis.cpp In file included from /usr/include/c++/8/vector:64, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:26, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, @@ -2290,24 +2205,6 @@ _M_range_insert(__pos, __first, __last, ^~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1549:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_bs.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_bs.qm -[ 8%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gamessus.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/gamessus.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessus.cpp -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qiodevice.h:46, - from /usr/include/qt4/QtCore/QIODevice:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessus.h:22, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessus.cpp:17: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In member function 'void OpenQube::GamessukOut::readBasisSet(std::ifstream&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); @@ -2348,31 +2245,6 @@ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ca.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ca.qm -[ 9%] Generating libavogadro_ca@valencia.qm -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/ca@valencia.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ca@valencia.ts -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ca@valencia.ts -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -[ 10%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/orca.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/orca.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/orca.cpp -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qalgorithms.h:45, - from /usr/include/qt4/QtCore/qstringlist.h:45, - from /usr/include/qt4/QtCore/QStringList:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/orca.h:20, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/orca.cpp:17: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ca@valencia.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ca@valencia.qm -[ 10%] Generating libavogadro_cs.qm -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/cs.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_cs.ts -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_cs.ts -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... In file included from /usr/include/c++/8/vector:69, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessus.h:24, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessus.cpp:17: @@ -2393,11 +2265,42 @@ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_cs.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_cs.qm -[ 10%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gaussianfchk.cpp.o +[ 4%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/moc_navigatetool.cxx +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/../../../../libavogadro/src/tools/navigatetool.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/moc_navigatetool.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 5%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/orca.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/orca.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/orca.cpp +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qalgorithms.h:45, + from /usr/include/qt4/QtCore/qstringlist.h:45, + from /usr/include/qt4/QtCore/QStringList:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/orca.h:20, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/orca.cpp:17: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 5%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gaussianfchk.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/gaussianfchk.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianfchk.cpp -[ 10%] Generating libavogadro_da.qm -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/da.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_da.ts In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -2413,44 +2316,14 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_da.ts -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_da.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_da.qm -[ 10%] Generating libavogadro_de.qm -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/de.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_de.ts -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_de.ts -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -In file included from /usr/include/c++/8/vector:69, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianfchk.h:24, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianfchk.cpp:17: -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 - vector<_Tp, _Alloc>:: - ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - _M_realloc_insert(end(), std::forward<_Args>(__args)...); - ^~~~~~~~~~~~~~~~~ -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_de.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_de.qm -[ 10%] Generating libavogadro_el.qm -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/el.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_el.ts -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_el.ts -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -In file included from /usr/include/c++/8/vector:69, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/orca.h:24, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/orca.cpp:17: -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 - vector<_Tp, _Alloc>:: - ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/8/vector:64, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/orca.h:24, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/orca.cpp:17: -/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - _M_realloc_insert(end(), __x); - ^~~~~~~~~~~~~~~~~ -[ 10%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gaussianset.cpp.o +[ 5%] Linking CXX static library libtubegen.a +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cmake -P CMakeFiles/tubegen.dir/cmake_clean_target.cmake +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cmake -E cmake_link_script CMakeFiles/tubegen.dir/link.txt --verbose=1 +/usr/bin/ar qc libtubegen.a CMakeFiles/tubegen.dir/Bitmap.c.o CMakeFiles/tubegen.dir/Core3DMath.c.o CMakeFiles/tubegen.dir/eprintf.c.o CMakeFiles/tubegen.dir/ANSR.cpp.o CMakeFiles/tubegen.dir/Cell.cpp.o CMakeFiles/tubegen.dir/CrystalCell.cpp.o CMakeFiles/tubegen.dir/diamond.cpp.o CMakeFiles/tubegen.dir/fcc.cpp.o CMakeFiles/tubegen.dir/graphite.cpp.o CMakeFiles/tubegen.dir/TubeGen.cpp.o CMakeFiles/tubegen.dir/TubuleBasis.cpp.o +/usr/bin/ranlib libtubegen.a +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 5%] Built target tubegen +[ 5%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gaussianset.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/gaussianset.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianset.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -2464,32 +2337,64 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -/usr/include/c++/8/bits/stl_vector.h: In member function 'void OpenQube::ORCAOutput::processLine(OpenQube::GaussianSet*)': -/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - _M_realloc_insert(end(), __x); - ^~~~~~~~~~~~~~~~~ -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_el.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_el.qm -[ 10%] Generating libavogadro_en_AU.qm -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/en_AU.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_en_AU.ts -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_en_AU.ts -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_en_AU.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_en_AU.qm -[ 10%] Generating libavogadro_en_CA.qm -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/en_CA.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_en_CA.ts -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_en_CA.ts -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -[ 10%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/molden.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/molden.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molden.cpp +[ 5%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/qrc_navigatetool.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/new:39, - from /usr/include/eigen3/Eigen/Core:82, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molden.h:22, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molden.cpp:17: + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/qrc_navigatetool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/c++/8/vector:69, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianfchk.h:24, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianfchk.cpp:17: +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 + vector<_Tp, _Alloc>:: + ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + _M_realloc_insert(end(), std::forward<_Args>(__args)...); + ^~~~~~~~~~~~~~~~~ +[ 5%] Linking CXX static library navigatetool.a +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/cmake -P CMakeFiles/navigatetool.dir/cmake_clean_target.cmake +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/navigatetool.dir/link.txt --verbose=1 +/usr/bin/ar qc navigatetool.a CMakeFiles/navigatetool.dir/navigatetool.cpp.o CMakeFiles/navigatetool.dir/eyecandy.cpp.o CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o +/usr/bin/ranlib navigatetool.a +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 5%] Built target navigatetool +make -f libavogadro/src/CMakeFiles/avogadro.dir/build.make libavogadro/src/CMakeFiles/avogadro.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 5%] Generating qrc_pythontool.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/rcc -name pythontool -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/qrc_pythontool.cxx /build/avogadro-1.2.0/libavogadro/src/pythontool.qrc +[ 5%] Generating moc_animation.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_animation.cxx_parameters +[ 5%] Generating moc_atom.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_atom.cxx_parameters +[ 6%] Generating moc_bond.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_bond.cxx_parameters +[ 6%] Generating moc_color.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_color.cxx_parameters +[ 6%] Generating moc_colorbutton.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_colorbutton.cxx_parameters +[ 6%] Generating moc_cube.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_cube.cxx_parameters +[ 6%] Generating moc_dockextension.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_dockextension.cxx_parameters +[ 6%] Generating moc_dockwidget.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_dockwidget.cxx_parameters +[ 6%] Generating moc_elementdetail_p.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_elementdetail_p.cxx_parameters +[ 6%] Generating moc_elementtranslator.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_elementtranslator.cxx_parameters +[ 6%] Generating moc_engine.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_engine.cxx_parameters +[ 7%] Generating moc_extension.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_extension.cxx_parameters +In file included from /usr/include/c++/8/vector:69, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:26, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianset.h:23, @@ -2523,22 +2428,71 @@ /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_en_CA.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_en_CA.qm -[ 10%] Generating libavogadro_en_GB.qm -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/en_GB.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_en_GB.ts -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_en_GB.ts -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -In file included from /usr/include/c++/8/vector:69, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molden.h:23, +[ 7%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/molden.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/molden.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molden.cpp +[ 7%] Generating moc_fragment.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_fragment.cxx_parameters +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/new:39, + from /usr/include/eigen3/Eigen/Core:82, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molden.h:22, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molden.cpp:17: -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 7%] Generating moc_glwidget.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_glwidget.cxx_parameters +[ 7%] Generating moc_mesh.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_mesh.cxx_parameters +[ 7%] Generating moc_meshgenerator.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_meshgenerator.cxx_parameters +In file included from /usr/include/c++/8/vector:69, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/orca.h:24, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/orca.cpp:17: +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - _M_realloc_insert(end(), std::forward<_Args>(__args)...); +In file included from /usr/include/c++/8/vector:64, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/orca.h:24, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/orca.cpp:17: +/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + _M_realloc_insert(end(), __x); + ^~~~~~~~~~~~~~~~~ +[ 7%] Generating moc_molecule.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_molecule.cxx_parameters +[ 7%] Generating moc_moleculefile.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_moleculefile.cxx_parameters +[ 7%] Generating moc_periodictablescene_p.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_periodictablescene_p.cxx_parameters +[ 7%] Generating moc_periodictableview.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_periodictableview.cxx_parameters +[ 8%] Generating moc_plotwidget.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_plotwidget.cxx_parameters +[ 8%] Generating moc_plugin.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_plugin.cxx_parameters +[ 8%] Generating moc_pluginmanager.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_pluginmanager.cxx_parameters +[ 8%] Generating moc_primitive.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_primitive.cxx_parameters +[ 8%] Generating moc_protein.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_protein.cxx_parameters +[ 8%] Generating moc_readfilethread_p.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_readfilethread_p.cxx_parameters +[ 8%] Generating moc_residue.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_residue.cxx_parameters +/usr/include/c++/8/bits/stl_vector.h: In member function 'void OpenQube::ORCAOutput::processLine(OpenQube::GaussianSet*)': +/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ +[ 8%] Generating moc_textmatrixeditor.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_textmatrixeditor.cxx_parameters +[ 8%] Generating moc_tool.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_tool.cxx_parameters +[ 8%] Generating moc_toolgroup.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_toolgroup.cxx_parameters In file included from /usr/include/c++/8/vector:64, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:26, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, @@ -2566,6 +2520,12 @@ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ +[ 9%] Generating moc_zmatrix.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_zmatrix.cxx_parameters +[ 9%] Generating moc_pythonengine_p.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_pythonengine_p.cxx_parameters +[ 9%] Generating moc_pythonerror.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_pythonerror.cxx_parameters /usr/include/c++/8/bits/stl_vector.h: In member function 'void OpenQube::GaussianSet::initCalculationForOrca()': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); @@ -2609,30 +2569,27 @@ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_en_GB.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_en_GB.qm -[ 10%] Generating libavogadro_es.qm -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/es.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_es.ts -[ 10%] Generating libavogadro_et.qm -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/et.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_et.ts -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_es.ts -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_et.ts -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_et.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_et.qm -[ 11%] Generating libavogadro_eu.qm -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/eu.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_eu.ts -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_eu.ts -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_es.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_es.qm -[ 11%] Generating libavogadro_fi.qm -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/fi.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_fi.ts -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_fi.ts +[ 9%] Generating moc_pythonextension_p.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_pythonextension_p.cxx_parameters +[ 9%] Generating moc_pythontool_p.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_pythontool_p.cxx_parameters +[ 9%] Generating libavogadro_ar.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/ar.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ar.ts +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ar.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_eu.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_eu.qm -[ 11%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/molecule.cpp.o +In file included from /usr/include/c++/8/vector:69, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molden.h:23, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molden.cpp:17: +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 + vector<_Tp, _Alloc>:: + ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + _M_realloc_insert(end(), std::forward<_Args>(__args)...); + ^~~~~~~~~~~~~~~~~ +[ 9%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/molecule.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/molecule.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.cpp -[ 11%] Generating libavogadro_fr.qm -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/fr.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_fr.ts In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/new:39, @@ -2643,38 +2600,7 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_fr.ts -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_fi.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_fi.qm -[ 11%] Generating libavogadro_gl.qm -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/gl.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_gl.ts -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_gl.ts -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_fr.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_fr.qm -[ 11%] Generating libavogadro_he.qm -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/he.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_he.ts -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_gl.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_gl.qm -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_he.ts -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -[ 11%] Generating libavogadro_hi.qm -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/hi.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_hi.ts -In file included from /usr/include/c++/8/vector:69, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:26, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.cpp:17: -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Eigen::Matrix&}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]': -/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 - vector<_Tp, _Alloc>:: - ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/8/vector:64, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:26, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.cpp:17: -/usr/include/c++/8/bits/stl_vector.h: In member function 'OpenQube::Atom OpenQube::Molecule::addAtom(const Vector3d&, short int)': -/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - _M_realloc_insert(end(), __x); - ^~~~~~~~~~~~~~~~~ -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_hi.ts -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -[ 11%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/mopacaux.cpp.o +[ 9%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/mopacaux.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/mopacaux.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/mopacaux.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -2692,13 +2618,26 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_he.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_he.qm -[ 11%] Generating libavogadro_hu.qm -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/hu.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_hu.ts -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_hu.ts +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ar.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ar.qm +[ 9%] Generating libavogadro_bg.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/bg.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_bg.ts +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_bg.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_hi.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_hi.qm -[ 11%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/slaterset.cpp.o +In file included from /usr/include/c++/8/vector:69, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:26, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.cpp:17: +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Eigen::Matrix&}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]': +/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 + vector<_Tp, _Alloc>:: + ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/8/vector:64, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:26, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.cpp:17: +/usr/include/c++/8/bits/stl_vector.h: In member function 'OpenQube::Atom OpenQube::Molecule::addAtom(const Vector3d&, short int)': +/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + _M_realloc_insert(end(), __x); + ^~~~~~~~~~~~~~~~~ +[ 9%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/slaterset.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/slaterset.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/slaterset.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -2712,24 +2651,9 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_hu.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_hu.qm -[ 11%] Generating libavogadro_id.qm -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/id.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_id.ts -In file included from /usr/include/c++/8/vector:69, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/mopacaux.h:24, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/mopacaux.cpp:17: -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 - vector<_Tp, _Alloc>:: - ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/vector.tcc: In member function 'std::vector OpenQube::MopacAux::readArrayD(unsigned int)': -/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - _M_realloc_insert(end(), std::forward<_Args>(__args)...); - ^~~~~~~~~~~~~~~~~ -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_id.ts -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -[ 11%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/moc_basisset.cxx.o +[ 9%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/moc_basisset.cxx.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/moc_basisset.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube/moc_basisset.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_bg.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_bg.qm In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/new:39, @@ -2741,17 +2665,22 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_id.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_id.qm -[ 11%] Generating libavogadro_it.qm -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/it.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_it.ts -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_it.ts -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -[ 12%] Generating libavogadro_ja.qm -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/ja.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ja.ts -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ja.ts +[ 9%] Generating libavogadro_bs.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/bs.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_bs.ts +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_bs.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_it.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_it.qm -[ 12%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/moc_gaussianset.cxx.o +In file included from /usr/include/c++/8/vector:69, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/mopacaux.h:24, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/mopacaux.cpp:17: +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 + vector<_Tp, _Alloc>:: + ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/8/bits/vector.tcc: In member function 'std::vector OpenQube::MopacAux::readArrayD(unsigned int)': +/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + _M_realloc_insert(end(), std::forward<_Args>(__args)...); + ^~~~~~~~~~~~~~~~~ +[ 9%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/moc_gaussianset.cxx.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/moc_gaussianset.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube/moc_gaussianset.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -2765,17 +2694,12 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ja.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ja.qm -[ 12%] Generating libavogadro_kn.qm -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/kn.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_kn.ts -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_kn.ts -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -[ 12%] Generating libavogadro_ko.qm -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/ko.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ko.ts -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ko.ts +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_bs.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_bs.qm +[ 9%] Generating libavogadro_ca.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/ca.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ca.ts +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ca.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_kn.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_kn.qm -[ 13%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/moc_slaterset.cxx.o +[ 10%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/moc_slaterset.cxx.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/moc_slaterset.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube/moc_slaterset.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -2789,25 +2713,72 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ko.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ko.qm -[ 13%] Generating libavogadro_ms.qm -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/ms.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ms.ts -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ms.ts +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ca.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ca.qm +[ 11%] Generating libavogadro_ca@valencia.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/ca@valencia.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ca@valencia.ts +[ 11%] Generating libavogadro_cs.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/cs.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_cs.ts +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ca@valencia.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -[ 13%] Generating libavogadro_nb.qm -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/nb.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_nb.ts -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_nb.ts +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_cs.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ms.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ms.qm -[ 13%] Generating libavogadro_nl.qm -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/nl.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_nl.ts -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_nl.ts +[ 11%] Generating libavogadro_da.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/da.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_da.ts +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_da.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_nb.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_nb.qm -[ 13%] Generating libavogadro_oc.qm -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/oc.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_oc.ts -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_oc.ts +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ca@valencia.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ca@valencia.qm +[ 11%] Generating libavogadro_de.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/de.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_de.ts +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_cs.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_cs.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_de.ts +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +[ 11%] Generating libavogadro_el.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/el.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_el.ts +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_el.ts +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_da.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_da.qm +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +[ 11%] Generating libavogadro_en_AU.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/en_AU.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_en_AU.ts +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_en_AU.ts +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_de.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_de.qm +[ 11%] Generating libavogadro_en_CA.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/en_CA.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_en_CA.ts +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_el.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_el.qm +[ 11%] Generating libavogadro_en_GB.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/en_GB.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_en_GB.ts +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_en_CA.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_en_GB.ts +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_en_AU.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_en_AU.qm +[ 11%] Generating libavogadro_es.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/es.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_es.ts +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_es.ts +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_en_CA.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_en_CA.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_en_GB.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_en_GB.qm +[ 11%] Generating libavogadro_et.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/et.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_et.ts +[ 12%] Generating libavogadro_eu.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/eu.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_eu.ts +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_et.ts +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_eu.ts +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_es.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_es.qm +[ 12%] Generating libavogadro_fi.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/fi.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_fi.ts +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_fi.ts +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_et.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_et.qm +[ 12%] Generating libavogadro_fr.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/fr.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_fr.ts +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_eu.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_eu.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_fr.ts +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +[ 12%] Generating libavogadro_gl.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/gl.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_gl.ts In file included from /usr/include/c++/8/vector:69, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:26, from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, @@ -2817,47 +2788,131 @@ /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_nl.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_nl.qm /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Eigen::Matrix}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_gl.ts +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_fi.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_fi.qm +[ 12%] Generating libavogadro_he.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/he.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_he.ts +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_he.ts +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_fr.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_fr.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_gl.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_gl.qm +[ 12%] Generating libavogadro_hi.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/hi.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_hi.ts +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_hi.ts +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +[ 12%] Generating libavogadro_hu.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/hu.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_hu.ts +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_hu.ts +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_he.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_he.qm +[ 12%] Generating libavogadro_id.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/id.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_id.ts +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_id.ts +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_hu.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_hu.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_hi.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_hi.qm +[ 13%] Generating libavogadro_ja.qm +[ 13%] Generating libavogadro_it.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/ja.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ja.ts +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/it.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_it.ts +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_it.ts +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ja.ts +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_id.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_id.qm +[ 13%] Generating libavogadro_kn.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/kn.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_kn.ts +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_kn.ts +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ja.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ja.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_it.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_it.qm +[ 13%] Generating libavogadro_ko.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/ko.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ko.ts +[ 13%] Generating libavogadro_ms.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/ms.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ms.ts +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ko.ts +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ms.ts +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_kn.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_kn.qm +[ 13%] Generating libavogadro_nb.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/nb.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_nb.ts +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_nb.ts +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ms.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ms.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ko.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ko.qm +[ 13%] Generating libavogadro_nl.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/nl.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_nl.ts +[ 13%] Generating libavogadro_oc.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/oc.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_oc.ts +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_nl.ts +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_oc.ts +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_nb.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_nb.qm [ 13%] Generating libavogadro_pl.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/pl.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_pl.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_pl.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_oc.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_oc.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_nl.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_nl.qm [ 13%] Generating libavogadro_pt.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/pt.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_pt.ts +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_oc.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_oc.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_pt.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_pl.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_pl.qm [ 14%] Generating libavogadro_pt_BR.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/pt_BR.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_pt_BR.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_pt_BR.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_pt.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_pt.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_pl.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_pl.qm [ 14%] Generating libavogadro_ru.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/ru.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ru.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ru.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +[ 14%] Linking CXX shared library ../../../../../lib/libavogadro_OpenQube.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenQube.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -Wl,-soname,libavogadro_OpenQube.so.0 -o ../../../../../lib/libavogadro_OpenQube.so.0.1.0 CMakeFiles/OpenQube.dir/atom.cpp.o CMakeFiles/OpenQube.dir/basisset.cpp.o CMakeFiles/OpenQube.dir/basissetloader.cpp.o CMakeFiles/OpenQube.dir/cube.cpp.o CMakeFiles/OpenQube.dir/gamessukout.cpp.o CMakeFiles/OpenQube.dir/gamessus.cpp.o CMakeFiles/OpenQube.dir/orca.cpp.o CMakeFiles/OpenQube.dir/gaussianfchk.cpp.o CMakeFiles/OpenQube.dir/gaussianset.cpp.o CMakeFiles/OpenQube.dir/molden.cpp.o CMakeFiles/OpenQube.dir/molecule.cpp.o CMakeFiles/OpenQube.dir/mopacaux.cpp.o CMakeFiles/OpenQube.dir/slaterset.cpp.o CMakeFiles/OpenQube.dir/moc_basisset.cxx.o CMakeFiles/OpenQube.dir/moc_gaussianset.cxx.o CMakeFiles/OpenQube.dir/moc_slaterset.cxx.o -lQtCore -lQtGui +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_pt.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_pt.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_pt_BR.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_pt_BR.qm [ 14%] Generating libavogadro_sk.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/sk.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_sk.ts +[ 14%] Generating libavogadro_sl.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/sl.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_sl.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_sk.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_sl.ts +Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ru.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ru.qm -[ 14%] Generating libavogadro_sl.qm -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/sl.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_sl.ts -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_sk.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_sk.qm [ 14%] Generating libavogadro_sq.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/sq.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_sq.ts -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_sl.ts -Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_sq.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube && /usr/bin/cmake -E cmake_symlink_library ../../../../../lib/libavogadro_OpenQube.so.0.1.0 ../../../../../lib/libavogadro_OpenQube.so.0 ../../../../../lib/libavogadro_OpenQube.so +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 14%] Built target OpenQube +make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/DependInfo.cmake --color= +Scanning dependencies of target qube +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 14%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/qube.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/qube.dir/qube.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/qube.cpp +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/iostream:38, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/qube.cpp:2: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_sk.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_sk.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_sl.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_sl.qm -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_sq.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_sq.qm [ 14%] Generating libavogadro_sr.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/sr.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_sr.ts [ 14%] Generating libavogadro_sv.qm @@ -2866,81 +2921,62 @@ Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_sv.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_sr.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_sr.qm -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_sv.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_sv.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_sq.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_sq.qm [ 14%] Generating libavogadro_th.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/th.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_th.ts -[ 14%] Generating libavogadro_tr.qm -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/tr.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_tr.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_th.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_sr.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_sr.qm +[ 14%] Generating libavogadro_tr.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/tr.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_tr.ts +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_sv.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_sv.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_tr.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_th.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_th.qm -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_tr.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_tr.qm [ 14%] Generating libavogadro_ug.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/ug.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ug.ts -[ 15%] Generating libavogadro_uk.qm -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/uk.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_uk.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ug.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_th.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_th.qm +[ 14%] Linking CXX executable ../../../../../bin/qube +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube && /usr/bin/cmake -E cmake_link_script CMakeFiles/qube.dir/link.txt --verbose=1 +/usr/bin/c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -rdynamic CMakeFiles/qube.dir/qube.cpp.o -o ../../../../../bin/qube -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../../../lib/libavogadro_OpenQube.so.0.1.0 -lQtOpenGL -lQtGui -lQtCore +[ 15%] Generating libavogadro_uk.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/uk.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_uk.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_uk.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -[ 15%] Linking CXX shared library ../../../../../lib/libavogadro_OpenQube.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenQube.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -Wl,-soname,libavogadro_OpenQube.so.0 -o ../../../../../lib/libavogadro_OpenQube.so.0.1.0 CMakeFiles/OpenQube.dir/atom.cpp.o CMakeFiles/OpenQube.dir/basisset.cpp.o CMakeFiles/OpenQube.dir/basissetloader.cpp.o CMakeFiles/OpenQube.dir/cube.cpp.o CMakeFiles/OpenQube.dir/gamessukout.cpp.o CMakeFiles/OpenQube.dir/gamessus.cpp.o CMakeFiles/OpenQube.dir/orca.cpp.o CMakeFiles/OpenQube.dir/gaussianfchk.cpp.o CMakeFiles/OpenQube.dir/gaussianset.cpp.o CMakeFiles/OpenQube.dir/molden.cpp.o CMakeFiles/OpenQube.dir/molecule.cpp.o CMakeFiles/OpenQube.dir/mopacaux.cpp.o CMakeFiles/OpenQube.dir/slaterset.cpp.o CMakeFiles/OpenQube.dir/moc_basisset.cxx.o CMakeFiles/OpenQube.dir/moc_gaussianset.cxx.o CMakeFiles/OpenQube.dir/moc_slaterset.cxx.o -lQtCore -lQtGui -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ug.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ug.qm -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_uk.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_uk.qm +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 15%] Built target qube [ 15%] Generating libavogadro_vi.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/vi.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_vi.ts -[ 15%] Generating libavogadro_zh_CN.qm -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/zh_CN.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_zh_CN.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_vi.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_tr.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_tr.qm +[ 15%] Generating libavogadro_zh_CN.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/zh_CN.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_zh_CN.ts +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ug.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_ug.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_zh_CN.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube && /usr/bin/cmake -E cmake_symlink_library ../../../../../lib/libavogadro_OpenQube.so.0.1.0 ../../../../../lib/libavogadro_OpenQube.so.0 ../../../../../lib/libavogadro_OpenQube.so -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 15%] Built target OpenQube -make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/DependInfo.cmake --color= -Scanning dependencies of target qube -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 15%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/qube.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/qube.dir/qube.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/qube.cpp -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/iostream:38, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/qube.cpp:2: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_vi.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_vi.qm -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_zh_CN.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_zh_CN.qm [ 15%] Generating libavogadro_zh_TW.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/libavogadro/zh_TW.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_zh_TW.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_zh_TW.ts Scanning directory '/build/avogadro-1.2.0/libavogadro/src'... +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_uk.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_uk.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_vi.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_vi.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_zh_CN.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_zh_CN.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_zh_TW.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/libavogadro_zh_TW.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/CMakeFiles/avogadro.dir/DependInfo.cmake --color= -[ 15%] Linking CXX executable ../../../../../bin/qube -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube && /usr/bin/cmake -E cmake_link_script CMakeFiles/qube.dir/link.txt --verbose=1 -/usr/bin/c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -rdynamic CMakeFiles/qube.dir/qube.cpp.o -o ../../../../../bin/qube -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../../../lib/libavogadro_OpenQube.so.0.1.0 -lQtOpenGL -lQtGui -lQtCore -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 15%] Built target qube Scanning dependencies of target avogadro make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/CMakeFiles/avogadro.dir/build.make libavogadro/src/CMakeFiles/avogadro.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/bond.cpp.o [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/animation.cpp.o -[ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/atom.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/animation.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/animation.cpp +[ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/atom.cpp.o +[ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/bond.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/atom.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/atom.cpp cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/bond.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/bond.cpp +[ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/camera.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/camera.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/camera.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -2951,10 +2987,9 @@ from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/libavogadro/src/bond.h:31, - from /build/avogadro-1.2.0/libavogadro/src/bond.cpp:26: + from /build/avogadro-1.2.0/libavogadro/src/global.h:29, + from /build/avogadro-1.2.0/libavogadro/src/animation.h:29, + from /build/avogadro-1.2.0/libavogadro/src/animation.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -2968,9 +3003,10 @@ from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/libavogadro/src/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/animation.h:29, - from /build/avogadro-1.2.0/libavogadro/src/animation.cpp:25: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/libavogadro/src/atom.h:31, + from /build/avogadro-1.2.0/libavogadro/src/atom.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -2986,13 +3022,11 @@ from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/libavogadro/src/atom.h:31, - from /build/avogadro-1.2.0/libavogadro/src/atom.cpp:27: + from /build/avogadro-1.2.0/libavogadro/src/bond.h:31, + from /build/avogadro-1.2.0/libavogadro/src/bond.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/camera.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/camera.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/camera.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -3403,6 +3437,20 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +In file included from /usr/include/c++/8/vector:69, + from /build/avogadro-1.2.0/libavogadro/src/molecule.h:34, + from /build/avogadro-1.2.0/libavogadro/src/molecule.cpp:28: +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]': +/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 + vector<_Tp, _Alloc>:: + ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/8/vector:64, + from /build/avogadro-1.2.0/libavogadro/src/molecule.h:34, + from /build/avogadro-1.2.0/libavogadro/src/molecule.cpp:28: +/usr/include/c++/8/bits/stl_vector.h: In member function 'Avogadro::Atom* Avogadro::Molecule::addAtom(long unsigned int)': +/usr/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + _M_fill_insert(end(), __new_size - size(), __x); + ^~~~~~~~~~~~~~ [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/neighborlist.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/neighborlist.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/neighborlist.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, @@ -3426,24 +3474,14 @@ In file included from /usr/include/c++/8/vector:69, from /build/avogadro-1.2.0/libavogadro/src/molecule.h:34, from /build/avogadro-1.2.0/libavogadro/src/molecule.cpp:28: -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]': -/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 - vector<_Tp, _Alloc>:: - ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/8/vector:64, - from /build/avogadro-1.2.0/libavogadro/src/molecule.h:34, - from /build/avogadro-1.2.0/libavogadro/src/molecule.cpp:28: -/usr/include/c++/8/bits/stl_vector.h: In member function 'Avogadro::Atom* Avogadro::Molecule::addAtom(long unsigned int)': -/usr/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - _M_fill_insert(end(), __new_size - size(), __x); - ^~~~~~~~~~~~~~ -In file included from /usr/include/c++/8/vector:69, - from /build/avogadro-1.2.0/libavogadro/src/molecule.h:34, - from /build/avogadro-1.2.0/libavogadro/src/molecule.cpp:28: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Eigen::Matrix}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Eigen::Matrix}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]': +/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + _M_realloc_insert(end(), std::forward<_Args>(__args)...); + ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/molecule.h:34, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/neighborlist.h:30, @@ -3452,10 +3490,6 @@ /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Eigen::Matrix}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]': -/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - _M_realloc_insert(end(), std::forward<_Args>(__args)...); - ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/molecule.h:34, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/neighborlist.h:30, @@ -3692,25 +3726,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -In file included from /usr/include/c++/8/vector:69, - from /build/avogadro-1.2.0/libavogadro/src/moleculefile.h:35, - from /build/avogadro-1.2.0/libavogadro/src/readfilethread_p.cpp:25: -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Eigen::Matrix}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]': -/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 - vector<_Tp, _Alloc>:: - ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/vector.tcc: In member function 'void Avogadro::ReadFileThread::addConformer(const OpenBabel::OBMol&)': -/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - _M_realloc_insert(end(), std::forward<_Args>(__args)...); - ^~~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::fpos<__mbstate_t>}; _Tp = std::fpos<__mbstate_t>; _Alloc = std::allocator >]': -/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 - vector<_Tp, _Alloc>:: - ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::fpos<__mbstate_t>}; _Tp = std::fpos<__mbstate_t>; _Alloc = std::allocator >]': -/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - _M_realloc_insert(end(), std::forward<_Args>(__args)...); - ^~~~~~~~~~~~~~~~~ [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/residue.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/residue.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/residue.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, @@ -3731,6 +3746,25 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +In file included from /usr/include/c++/8/vector:69, + from /build/avogadro-1.2.0/libavogadro/src/moleculefile.h:35, + from /build/avogadro-1.2.0/libavogadro/src/readfilethread_p.cpp:25: +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Eigen::Matrix}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]': +/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 + vector<_Tp, _Alloc>:: + ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/8/bits/vector.tcc: In member function 'void Avogadro::ReadFileThread::addConformer(const OpenBabel::OBMol&)': +/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + _M_realloc_insert(end(), std::forward<_Args>(__args)...); + ^~~~~~~~~~~~~~~~~ +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::fpos<__mbstate_t>}; _Tp = std::fpos<__mbstate_t>; _Alloc = std::allocator >]': +/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 + vector<_Tp, _Alloc>:: + ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::fpos<__mbstate_t>}; _Tp = std::fpos<__mbstate_t>; _Alloc = std::allocator >]': +/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + _M_realloc_insert(end(), std::forward<_Args>(__args)...); + ^~~~~~~~~~~~~~~~~ [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/sphere_p.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/sphere_p.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/sphere_p.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, @@ -3946,6 +3980,8 @@ ^~~~~~~ [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonextension_p.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/pythonextension_p.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/pythonextension_p.cpp +[ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_animation.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_animation.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_animation.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -3964,8 +4000,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_animation.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_animation.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_animation.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4277,6 +4311,8 @@ ^~~~~~~ [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_moleculefile.cxx.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_moleculefile.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_moleculefile.cxx +[ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_periodictablescene_p.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_periodictablescene_p.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_periodictablescene_p.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4293,8 +4329,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_periodictablescene_p.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_periodictablescene_p.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_periodictablescene_p.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4310,10 +4344,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_plotwidget.cxx.o [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_periodictableview.cxx.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_periodictableview.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_periodictableview.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_plotwidget.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_plotwidget.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4330,6 +4362,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_plotwidget.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_plotwidget.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_plotwidget.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4473,6 +4507,7 @@ ^~~~~~~ [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_tool.cxx.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_tool.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_tool.cxx +[ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_toolgroup.cxx.o In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4489,7 +4524,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_toolgroup.cxx.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_toolgroup.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/moc_toolgroup.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -4617,56 +4651,51 @@ make -f libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build.make libavogadro/src/engines/CMakeFiles/qtaimengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/forceengine.dir/build.make libavogadro/src/engines/CMakeFiles/forceengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/hbondengine.dir/build.make libavogadro/src/engines/CMakeFiles/hbondengine.dir/depend +make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' [ 25%] Generating moc_forceengine.cxx -[ 25%] Generating ui_hbondsettingswidget.h -[ 25%] Generating ui_qtaimsettingswidget.h cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_forceengine.cxx_parameters +[ 25%] Generating ui_labelsettingswidget.h +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/ui_labelsettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/labelsettingswidget.ui +[ 25%] Generating ui_qtaimsettingswidget.h cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/ui_qtaimsettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/qtaimsettingswidget.ui +[ 25%] Generating ui_hbondsettingswidget.h cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/ui_hbondsettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/hbondsettingswidget.ui +[ 25%] Generating moc_labelengine.cxx [ 25%] Generating moc_hbondengine.cxx -[ 25%] Generating moc_qtaimengine.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_labelengine.cxx_parameters cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_hbondengine.cxx_parameters +[ 25%] Generating moc_qtaimengine.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_qtaimengine.cxx_parameters cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/forceengine.dir/DependInfo.cmake --color= -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/qtaimengine.dir/DependInfo.cmake --color= cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/hbondengine.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/labelengine.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/qtaimengine.dir/DependInfo.cmake --color= Scanning dependencies of target forceengine make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/engines/CMakeFiles/forceengine.dir/build.make libavogadro/src/engines/CMakeFiles/forceengine.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 25%] Building CXX object libavogadro/src/engines/CMakeFiles/forceengine.dir/forceengine.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforceengine_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forceengine.dir/forceengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/forceengine.cpp Scanning dependencies of target hbondengine make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/engines/CMakeFiles/hbondengine.dir/build.make libavogadro/src/engines/CMakeFiles/hbondengine.dir/build -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/forceengine.h:28, - from /build/avogadro-1.2.0/libavogadro/src/engines/forceengine.cpp:25: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ +Scanning dependencies of target labelengine +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' Scanning dependencies of target qtaimengine make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build.make libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 25%] Building CXX object libavogadro/src/engines/CMakeFiles/forceengine.dir/forceengine.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforceengine_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forceengine.dir/forceengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/forceengine.cpp [ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/hbondengine.dir/hbondengine.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhbondengine_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/hbondengine.dir/hbondengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/hbondengine.cpp -[ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimengine_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.cpp +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/labelengine.dir/labelengine.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dlabelengine_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/labelengine.dir/labelengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/labelengine.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4678,8 +4707,8 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/hbondengine.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/hbondengine.cpp:26: + from /build/avogadro-1.2.0/libavogadro/src/engines/forceengine.h:28, + from /build/avogadro-1.2.0/libavogadro/src/engines/forceengine.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -4694,13 +4723,13 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.cpp:26: + from /build/avogadro-1.2.0/libavogadro/src/engines/hbondengine.h:29, + from /build/avogadro-1.2.0/libavogadro/src/engines/hbondengine.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/forceengine.dir/moc_forceengine.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforceengine_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forceengine.dir/moc_forceengine.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_forceengine.cxx +[ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimengine_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4712,16 +4741,11 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/../../../../libavogadro/src/engines/forceengine.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_forceengine.cxx:9: + from /build/avogadro-1.2.0/libavogadro/src/engines/labelengine.h:31, + from /build/avogadro-1.2.0/libavogadro/src/engines/labelengine.cpp:28: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 27%] Linking CXX shared module ../../../lib/forceengine.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/forceengine.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/forceengine.so CMakeFiles/forceengine.dir/forceengine.cpp.o CMakeFiles/forceengine.dir/moc_forceengine.cxx.o -L/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -[ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhbondengine_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_hbondengine.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4733,26 +4757,13 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/../../../../libavogadro/src/engines/hbondengine.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_hbondengine.cxx:9: + from /build/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.h:29, + from /build/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 27%] Built target forceengine -make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 27%] Generating ui_labelsettingswidget.h -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/ui_labelsettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/labelsettingswidget.ui -[ 27%] Generating moc_labelengine.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_labelengine.cxx_parameters -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/labelengine.dir/DependInfo.cmake --color= -Scanning dependencies of target labelengine -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/labelengine.dir/labelengine.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dlabelengine_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/labelengine.dir/labelengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/labelengine.cpp +[ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/forceengine.dir/moc_forceengine.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforceengine_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forceengine.dir/moc_forceengine.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_forceengine.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4764,13 +4775,13 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/labelengine.h:31, - from /build/avogadro-1.2.0/libavogadro/src/engines/labelengine.cpp:28: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/../../../../libavogadro/src/engines/forceengine.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_forceengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimengine_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_qtaimengine.cxx +[ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhbondengine_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_hbondengine.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4782,16 +4793,16 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/../../../../libavogadro/src/engines/qtaimengine.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_qtaimengine.cxx:9: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/../../../../libavogadro/src/engines/hbondengine.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_hbondengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 27%] Linking CXX shared module ../../../lib/hbondengine.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/hbondengine.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/hbondengine.so CMakeFiles/hbondengine.dir/hbondengine.cpp.o CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o -L/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 27%] Linking CXX shared module ../../../lib/forceengine.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/forceengine.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/forceengine.so CMakeFiles/forceengine.dir/forceengine.cpp.o CMakeFiles/forceengine.dir/moc_forceengine.cxx.o -L/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 27%] Built target hbondengine +[ 27%] Built target forceengine make -f libavogadro/src/engines/CMakeFiles/ringengine.dir/build.make libavogadro/src/engines/CMakeFiles/ringengine.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' [ 27%] Generating ui_ringsettingswidget.h @@ -4821,24 +4832,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 27%] Linking CXX shared module ../../../lib/qtaimengine.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/qtaimengine.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/qtaimengine.so CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o -L/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 27%] Built target qtaimengine -make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 27%] Generating ui_axessettingswidget.h -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/ui_axessettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/axessettingswidget.ui -[ 27%] Generating moc_axesengine.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_axesengine.cxx_parameters -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/axesengine.dir/DependInfo.cmake --color= -Scanning dependencies of target axesengine -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/axesengine.dir/axesengine.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daxesengine_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/axesengine.dir/axesengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/axesengine.cpp +[ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimengine_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_qtaimengine.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4850,8 +4845,8 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/axesengine.h:28, - from /build/avogadro-1.2.0/libavogadro/src/engines/axesengine.cpp:28: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/../../../../libavogadro/src/engines/qtaimengine.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_qtaimengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -4873,26 +4868,24 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/ringengine.dir/moc_ringengine.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dringengine_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/ringengine.dir/moc_ringengine.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_ringengine.cxx -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/../../../../libavogadro/src/engines/ringengine.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_ringengine.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/axesengine.dir/moc_axesengine.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daxesengine_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/axesengine.dir/moc_axesengine.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_axesengine.cxx +[ 27%] Linking CXX shared module ../../../lib/hbondengine.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/hbondengine.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/hbondengine.so CMakeFiles/hbondengine.dir/hbondengine.cpp.o CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o -L/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 27%] Built target hbondengine +make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 27%] Generating ui_axessettingswidget.h +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/ui_axessettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/axessettingswidget.ui +[ 27%] Generating moc_axesengine.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_axesengine.cxx_parameters +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/axesengine.dir/DependInfo.cmake --color= +Scanning dependencies of target axesengine +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/axesengine.dir/axesengine.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daxesengine_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/axesengine.dir/axesengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/axesengine.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -4904,40 +4897,39 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/../../../../libavogadro/src/engines/axesengine.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_axesengine.cxx:9: + from /build/avogadro-1.2.0/libavogadro/src/engines/axesengine.h:28, + from /build/avogadro-1.2.0/libavogadro/src/engines/axesengine.cpp:28: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 28%] Linking CXX shared module ../../../lib/ringengine.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/ringengine.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/ringengine.so CMakeFiles/ringengine.dir/ringengine.cpp.o CMakeFiles/ringengine.dir/moc_ringengine.cxx.o -L/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -[ 28%] Linking CXX shared module ../../../lib/labelengine.so +[ 27%] Linking CXX shared module ../../../lib/qtaimengine.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/qtaimengine.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/qtaimengine.so CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o -L/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 27%] Linking CXX shared module ../../../lib/labelengine.so cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/labelengine.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/labelengine.so CMakeFiles/labelengine.dir/labelengine.cpp.o CMakeFiles/labelengine.dir/moc_labelengine.cxx.o -L/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 28%] Built target ringengine +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/labelengine.so CMakeFiles/labelengine.dir/labelengine.cpp.o CMakeFiles/labelengine.dir/moc_labelengine.cxx.o -L/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 27%] Built target qtaimengine make -f libavogadro/src/engines/CMakeFiles/stickengine.dir/build.make libavogadro/src/engines/CMakeFiles/stickengine.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 28%] Generating ui_sticksettingswidget.h +[ 27%] Generating ui_sticksettingswidget.h cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/ui_sticksettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/sticksettingswidget.ui -[ 28%] Generating moc_stickengine.cxx +[ 27%] Generating moc_stickengine.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_stickengine.cxx_parameters +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/stickengine.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 28%] Built target labelengine +[ 27%] Built target labelengine make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 28%] Generating ui_ribbonsettingswidget.h +[ 27%] Generating ui_ribbonsettingswidget.h cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/ui_ribbonsettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/ribbonsettingswidget.ui -[ 28%] Generating moc_ribbonengine.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_ribbonengine.cxx_parameters -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/stickengine.dir/DependInfo.cmake --color= -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/ribbonengine.dir/DependInfo.cmake --color= Scanning dependencies of target stickengine make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/engines/CMakeFiles/stickengine.dir/build.make libavogadro/src/engines/CMakeFiles/stickengine.dir/build +[ 27%] Generating moc_ribbonengine.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_ribbonengine.cxx_parameters make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/stickengine.dir/stickengine.cpp.o +[ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/stickengine.dir/stickengine.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dstickengine_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/stickengine.dir/stickengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/stickengine.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -4955,6 +4947,25 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/ribbonengine.dir/DependInfo.cmake --color= +[ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/ringengine.dir/moc_ringengine.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dringengine_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/ringengine.dir/moc_ringengine.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_ringengine.cxx +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/../../../../libavogadro/src/engines/ringengine.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_ringengine.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ Scanning dependencies of target ribbonengine make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build @@ -4977,11 +4988,11 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 28%] Linking CXX shared module ../../../lib/axesengine.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/axesengine.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/axesengine.so CMakeFiles/axesengine.dir/axesengine.cpp.o CMakeFiles/axesengine.dir/moc_axesengine.cxx.o -L/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 28%] Linking CXX shared module ../../../lib/ringengine.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/ringengine.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/ringengine.so CMakeFiles/ringengine.dir/ringengine.cpp.o CMakeFiles/ringengine.dir/moc_ringengine.cxx.o -L/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 28%] Built target axesengine +[ 28%] Built target ringengine make -f libavogadro/src/engines/CMakeFiles/wireengine.dir/build.make libavogadro/src/engines/CMakeFiles/wireengine.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' [ 28%] Generating ui_wiresettingswidget.h @@ -5011,6 +5022,24 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/axesengine.dir/moc_axesengine.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daxesengine_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/axesengine.dir/moc_axesengine.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_axesengine.cxx +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/../../../../libavogadro/src/engines/axesengine.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_axesengine.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ [ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dribbonengine_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_ribbonengine.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, @@ -5047,11 +5076,11 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 28%] Linking CXX shared module ../../../lib/ribbonengine.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/ribbonengine.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/ribbonengine.so CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o -L/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 28%] Linking CXX shared module ../../../lib/axesengine.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/axesengine.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/axesengine.so CMakeFiles/axesengine.dir/axesengine.cpp.o CMakeFiles/axesengine.dir/moc_axesengine.cxx.o -L/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 28%] Built target ribbonengine +[ 28%] Built target axesengine make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' [ 28%] Generating ui_cartoonsettingswidget.h @@ -5059,6 +5088,9 @@ [ 28%] Generating moc_cartoonengine.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_cartoonengine.cxx_parameters cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/cartoonengine.dir/DependInfo.cmake --color= +[ 28%] Linking CXX shared module ../../../lib/ribbonengine.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/ribbonengine.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/ribbonengine.so CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o -L/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU Scanning dependencies of target cartoonengine make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build @@ -5081,11 +5113,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 28%] Linking CXX shared module ../../../lib/stickengine.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/stickengine.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/stickengine.so CMakeFiles/stickengine.dir/stickengine.cpp.o CMakeFiles/stickengine.dir/moc_stickengine.cxx.o -L/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 28%] Built target stickengine +[ 28%] Built target ribbonengine make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' [ 28%] Generating ui_spheresettingswidget.h @@ -5093,6 +5122,9 @@ [ 28%] Generating moc_sphereengine.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_sphereengine.cxx_parameters cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/sphereengine.dir/DependInfo.cmake --color= +[ 28%] Linking CXX shared module ../../../lib/stickengine.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/stickengine.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/stickengine.so CMakeFiles/stickengine.dir/stickengine.cpp.o CMakeFiles/stickengine.dir/moc_stickengine.cxx.o -L/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU Scanning dependencies of target sphereengine make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/build @@ -5115,6 +5147,37 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 28%] Built target stickengine +make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 28%] Generating ui_dipolesettingswidget.h +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/ui_dipolesettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/dipolesettingswidget.ui +[ 28%] Generating moc_dipoleengine.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_dipoleengine.cxx_parameters +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/dipoleengine.dir/DependInfo.cmake --color= +Scanning dependencies of target dipoleengine +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddipoleengine_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.cpp +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.h:29, + from /build/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.cpp:26: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ [ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/wireengine.dir/moc_wireengine.cxx.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dwireengine_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/wireengine.dir/moc_wireengine.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_wireengine.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, @@ -5151,8 +5214,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartoonengine_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.cpp +[ 30%] Building CXX object libavogadro/src/engines/CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddipoleengine_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_dipoleengine.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5164,29 +5227,13 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.h:41, - from /build/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.cpp:38: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/../../../../libavogadro/src/engines/dipoleengine.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_dipoleengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 30%] Linking CXX shared module ../../../lib/wireengine.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/wireengine.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/wireengine.so CMakeFiles/wireengine.dir/wireengine.cpp.o CMakeFiles/wireengine.dir/moc_wireengine.cxx.o -L/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 30%] Built target wireengine -make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 30%] Generating ui_dipolesettingswidget.h -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/ui_dipolesettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/dipolesettingswidget.ui -[ 30%] Generating moc_dipoleengine.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_dipoleengine.cxx_parameters -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/dipoleengine.dir/DependInfo.cmake --color= -Scanning dependencies of target dipoleengine -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 30%] Building CXX object libavogadro/src/engines/CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddipoleengine_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.cpp +[ 30%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartoonengine_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5198,26 +5245,40 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.cpp:26: + from /build/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.h:41, + from /build/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.cpp:38: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 30%] Linking CXX shared module ../../../lib/sphereengine.so +[ 31%] Linking CXX shared module ../../../lib/wireengine.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/wireengine.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/wireengine.so CMakeFiles/wireengine.dir/wireengine.cpp.o CMakeFiles/wireengine.dir/moc_wireengine.cxx.o -L/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 31%] Linking CXX shared module ../../../lib/sphereengine.so cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/sphereengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/sphereengine.so CMakeFiles/sphereengine.dir/sphereengine.cpp.o CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o -L/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 30%] Built target sphereengine +[ 31%] Built target wireengine make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 30%] Generating moc_polygonengine.cxx +[ 31%] Generating moc_polygonengine.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_polygonengine.cxx_parameters cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/polygonengine.dir/DependInfo.cmake --color= +[ 31%] Linking CXX shared module ../../../lib/dipoleengine.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/dipoleengine.dir/link.txt --verbose=1 +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/dipoleengine.so CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o -L/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 31%] Built target sphereengine +make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 31%] Generating ui_surfacesettingswidget.h +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/ui_surfacesettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/surfacesettingswidget.ui Scanning dependencies of target polygonengine make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 30%] Building CXX object libavogadro/src/engines/CMakeFiles/polygonengine.dir/polygonengine.cpp.o +[ 31%] Generating moc_surfaceengine.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_surfaceengine.cxx_parameters +[ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/polygonengine.dir/polygonengine.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpolygonengine_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/polygonengine.dir/polygonengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/polygonengine.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -5235,26 +5296,19 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddipoleengine_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_dipoleengine.cxx -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/../../../../libavogadro/src/engines/dipoleengine.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_dipoleengine.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpolygonengine_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_polygonengine.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/surfaceengine.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 31%] Built target dipoleengine +make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +Scanning dependencies of target surfaceengine +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build +[ 31%] Generating moc_simplewireengine.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_simplewireengine.cxx_parameters +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceengine_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5266,45 +5320,18 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/../../../../libavogadro/src/engines/polygonengine.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_polygonengine.cxx:9: + from /build/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.h:30, + from /build/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 31%] Linking CXX shared module ../../../lib/dipoleengine.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/dipoleengine.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/dipoleengine.so CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o -L/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -[ 31%] Linking CXX shared module ../../../lib/polygonengine.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/polygonengine.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/polygonengine.so CMakeFiles/polygonengine.dir/polygonengine.cpp.o CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o -L/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 31%] Built target dipoleengine -make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/depend -[ 31%] Built target polygonengine -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 31%] Generating ui_surfacesettingswidget.h -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/ui_surfacesettingswidget.h /build/avogadro-1.2.0/libavogadro/src/engines/surfacesettingswidget.ui -[ 31%] Generating moc_simplewireengine.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_simplewireengine.cxx_parameters -[ 31%] Generating moc_surfaceengine.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_surfaceengine.cxx_parameters -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/surfaceengine.dir/DependInfo.cmake --color= cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/simplewireengine.dir/DependInfo.cmake --color= Scanning dependencies of target simplewireengine make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build -Scanning dependencies of target surfaceengine -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' [ 32%] Building CXX object libavogadro/src/engines/CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsimplewireengine_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/simplewireengine.cpp -[ 32%] Building CXX object libavogadro/src/engines/CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceengine_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5321,6 +5348,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 32%] Building CXX object libavogadro/src/engines/CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpolygonengine_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_polygonengine.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5332,8 +5361,8 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.h:30, - from /build/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.cpp:27: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/../../../../libavogadro/src/engines/polygonengine.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_polygonengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -5373,42 +5402,38 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 32%] Linking CXX shared module ../../../lib/polygonengine.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/polygonengine.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/polygonengine.so CMakeFiles/polygonengine.dir/polygonengine.cpp.o CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o -L/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU [ 32%] Linking CXX shared module ../../../lib/simplewireengine.so cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/simplewireengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/simplewireengine.so CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o -L/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -[ 32%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartoonengine_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_cartoonengine.cxx make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/../../../../libavogadro/src/engines/cartoonengine.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_cartoonengine.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 32%] Built target simplewireengine +[ 32%] Built target polygonengine make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' [ 32%] Generating qrc_selectrotatetool.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/lib/arm-linux-gnueabihf/qt4/bin/rcc -name selectrotatetool -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/qrc_selectrotatetool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.qrc [ 32%] Generating moc_selectrotatetool.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/moc_selectrotatetool.cxx_parameters +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 32%] Built target simplewireengine +make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/DependInfo.cmake --color= +[ 32%] Generating qrc_manipulatetool.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/lib/arm-linux-gnueabihf/qt4/bin/rcc -name manipulatetool -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/qrc_manipulatetool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.qrc +[ 32%] Generating moc_manipulatetool.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/moc_manipulatetool.cxx_parameters Scanning dependencies of target selectrotatetool make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 32%] Generating ui_manipulatesettingswidget.h [ 32%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/ui_manipulatesettingswidget.h /build/avogadro-1.2.0/libavogadro/src/tools/manipulatesettingswidget.ui cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.cpp +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/CMakeFiles/manipulatetool.dir/DependInfo.cmake --color= In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5426,25 +5451,11 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 33%] Linking CXX shared module ../../../lib/surfaceengine.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/surfaceengine.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/surfaceengine.so CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o -L/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 33%] Built target surfaceengine -make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 33%] Generating qrc_manipulatetool.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/lib/arm-linux-gnueabihf/qt4/bin/rcc -name manipulatetool -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/qrc_manipulatetool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.qrc -[ 33%] Generating moc_manipulatetool.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/moc_manipulatetool.cxx_parameters -[ 33%] Generating ui_manipulatesettingswidget.h -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/ui_manipulatesettingswidget.h /build/avogadro-1.2.0/libavogadro/src/tools/manipulatesettingswidget.ui -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/CMakeFiles/manipulatetool.dir/DependInfo.cmake --color= Scanning dependencies of target manipulatetool make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 34%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o +[ 33%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -5463,11 +5474,11 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 34%] Linking CXX shared module ../../../lib/cartoonengine.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/cartoonengine.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/cartoonengine.so CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o -L/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 34%] Linking CXX shared module ../../../lib/surfaceengine.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/surfaceengine.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/surfaceengine.so CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o -L/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 34%] Built target cartoonengine +[ 34%] Built target surfaceengine make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' [ 34%] Generating qrc_bondcentrictool.cxx @@ -5498,8 +5509,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 36%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/moc_selectrotatetool.cxx +[ 35%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartoonengine_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_cartoonengine.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5511,28 +5522,35 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/tool.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/../../../../libavogadro/src/tools/selectrotatetool.h:33, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/moc_selectrotatetool.cxx:9: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/../../../../libavogadro/src/engines/cartoonengine.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/moc_cartoonengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 36%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/qrc_selectrotatetool.cxx +[ 36%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/moc_selectrotatetool.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/qrc_selectrotatetool.cxx:9: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/tool.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/../../../../libavogadro/src/tools/selectrotatetool.h:33, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/moc_selectrotatetool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 36%] Linking CXX shared module ../../../lib/selectrotatetool.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/selectrotatetool.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/selectrotatetool.so CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 36%] Linking CXX shared module ../../../lib/cartoonengine.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/cartoonengine.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/cartoonengine.so CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o -L/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/.. -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/..:/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 36%] Built target selectrotatetool +[ 36%] Built target cartoonengine make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' [ 36%] Generating qrc_drawtool.cxx @@ -5563,81 +5581,34 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/drawcommand.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/drawtool.dir/drawcommand.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/drawcommand.cpp -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtGui/qundostack.h:45, - from /usr/include/qt4/QtGui/QUndoCommand:1, - from /build/avogadro-1.2.0/libavogadro/src/tools/drawcommand.h:31, - from /build/avogadro-1.2.0/libavogadro/src/tools/drawcommand.cpp:27: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/eyecandy.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/manipulatetool.dir/eyecandy.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/new:39, - from /usr/include/eigen3/Eigen/Core:82, - from /build/avogadro-1.2.0/libavogadro/src/tools/eyecandy.h:30, - from /build/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp:26: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/moc_drawtool.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/drawtool.dir/moc_drawtool.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/moc_drawtool.cxx -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/tool.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/../../../../libavogadro/src/tools/drawtool.h:30, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/moc_drawtool.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/qrc_drawtool.cxx +[ 36%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/qrc_selectrotatetool.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/qrc_drawtool.cxx:9: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/qrc_selectrotatetool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 37%] Linking CXX shared module ../../../lib/drawtool.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/drawtool.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/drawtool.so CMakeFiles/drawtool.dir/drawtool.cpp.o CMakeFiles/drawtool.dir/drawcommand.cpp.o CMakeFiles/drawtool.dir/moc_drawtool.cxx.o CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 36%] Linking CXX shared module ../../../lib/selectrotatetool.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/selectrotatetool.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/selectrotatetool.so CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 37%] Built target drawtool +[ 36%] Built target selectrotatetool make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 37%] Generating qrc_autoopttool.cxx +[ 36%] Generating qrc_autoopttool.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/lib/arm-linux-gnueabihf/qt4/bin/rcc -name autoopttool -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/qrc_autoopttool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/autoopttool.qrc -[ 37%] Generating moc_autoopttool.cxx +[ 36%] Generating moc_autoopttool.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/moc_autoopttool.cxx_parameters cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/CMakeFiles/autoopttool.dir/DependInfo.cmake --color= Scanning dependencies of target autoopttool make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/autoopttool.cpp.o +[ 36%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/autoopttool.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautoopttool_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autoopttool.dir/autoopttool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/autoopttool.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -5656,8 +5627,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp +[ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/drawcommand.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/drawtool.dir/drawcommand.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/drawcommand.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5666,9 +5637,21 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/QObject:1, - from /build/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:35, - from /build/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp:27: + from /usr/include/qt4/QtGui/qundostack.h:45, + from /usr/include/qt4/QtGui/QUndoCommand:1, + from /build/avogadro-1.2.0/libavogadro/src/tools/drawcommand.h:31, + from /build/avogadro-1.2.0/libavogadro/src/tools/drawcommand.cpp:27: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/eyecandy.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/manipulatetool.dir/eyecandy.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/new:39, + from /usr/include/eigen3/Eigen/Core:82, + from /build/avogadro-1.2.0/libavogadro/src/tools/eyecandy.h:30, + from /build/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -5691,25 +5674,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.cpp -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtGui/qundostack.h:45, - from /usr/include/qt4/QtGui/QUndoCommand:1, - from /build/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.h:30, - from /build/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.cpp:27: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/moc_manipulatetool.cxx +[ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/moc_drawtool.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/drawtool.dir/moc_drawtool.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/moc_drawtool.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5721,60 +5687,52 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/../../../../libavogadro/src/tools/manipulatetool.h:27, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/moc_manipulatetool.cxx:9: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/tool.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/../../../../libavogadro/src/tools/drawtool.h:30, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/moc_drawtool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 38%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautoopttool_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/qrc_autoopttool.cxx +[ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/qrc_drawtool.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/qrc_autoopttool.cxx:9: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/qrc_drawtool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 38%] Linking CXX shared module ../../../lib/autoopttool.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/autoopttool.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/autoopttool.so CMakeFiles/autoopttool.dir/autoopttool.cpp.o CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -[ 38%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/qrc_manipulatetool.cxx +[ 37%] Linking CXX shared module ../../../lib/drawtool.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/drawtool.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/drawtool.so CMakeFiles/drawtool.dir/drawtool.cpp.o CMakeFiles/drawtool.dir/drawcommand.cpp.o CMakeFiles/drawtool.dir/moc_drawtool.cxx.o CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 37%] Built target drawtool +make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 37%] Generating qrc_autorotatetool.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/lib/arm-linux-gnueabihf/qt4/bin/rcc -name autorotatetool -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/qrc_autorotatetool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.qrc +[ 37%] Generating moc_autorotatetool.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/moc_autorotatetool.cxx_parameters +[ 38%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautoopttool_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/qrc_autoopttool.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/CMakeFiles/autorotatetool.dir/DependInfo.cmake --color= In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/qrc_manipulatetool.cxx:9: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/qrc_autoopttool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 38%] Linking CXX shared module ../../../lib/manipulatetool.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/manipulatetool.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/manipulatetool.so CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o CMakeFiles/manipulatetool.dir/eyecandy.cpp.o CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 38%] Built target autoopttool -make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 38%] Generating qrc_autorotatetool.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/lib/arm-linux-gnueabihf/qt4/bin/rcc -name autorotatetool -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/qrc_autorotatetool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.qrc -[ 38%] Generating moc_autorotatetool.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/moc_autorotatetool.cxx_parameters -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/CMakeFiles/autorotatetool.dir/DependInfo.cmake --color= Scanning dependencies of target autorotatetool make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 38%] Built target manipulatetool -make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/depend [ 38%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautorotatetool_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.cpp -[ 38%] Generating qrc_clickmeasuretool.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5792,6 +5750,14 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 38%] Linking CXX shared module ../../../lib/autoopttool.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/autoopttool.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/autoopttool.so CMakeFiles/autoopttool.dir/autoopttool.cpp.o CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 38%] Built target autoopttool +make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 38%] Generating qrc_clickmeasuretool.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/lib/arm-linux-gnueabihf/qt4/bin/rcc -name clickmeasuretool -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/qrc_clickmeasuretool.cxx /build/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.qrc [ 38%] Generating moc_clickmeasuretool.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/moc_clickmeasuretool.cxx_parameters @@ -5819,6 +5785,22 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 38%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/QObject:1, + from /build/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:35, + from /build/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp:27: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ [ 38%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautorotatetool_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/moc_autorotatetool.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, @@ -5838,8 +5820,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 38%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/moc_bondcentrictool.cxx +[ 38%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5848,10 +5830,10 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/QObject:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:35, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/../../../../libavogadro/src/tools/bondcentrictool.h:34, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/moc_bondcentrictool.cxx:9: + from /usr/include/qt4/QtGui/qundostack.h:45, + from /usr/include/qt4/QtGui/QUndoCommand:1, + from /build/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.h:30, + from /build/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -5920,8 +5902,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 38%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/moc_skeletontree.cxx +[ 38%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/moc_manipulatetool.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5930,9 +5912,12 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/QObject:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:35, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/moc_skeletontree.cxx:9: + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/../../../../libavogadro/src/tools/manipulatetool.h:27, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/moc_manipulatetool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -5961,10 +5946,19 @@ make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build.make libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 38%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/qrc_manipulatetool.cxx [ 39%] Building CXX object libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/gl2psextension.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgl2psextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gl2psextension.dir/gl2psextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/gl2psextension.cpp -[ 39%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/qrc_bondcentrictool.cxx +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/qrc_manipulatetool.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -5983,20 +5977,11 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/qrc_bondcentrictool.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 39%] Linking CXX shared module ../../../lib/bondcentrictool.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/bondcentrictool.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/bondcentrictool.so CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 39%] Linking CXX shared module ../../../lib/manipulatetool.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/manipulatetool.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/manipulatetool.so CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o CMakeFiles/manipulatetool.dir/eyecandy.cpp.o CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 39%] Built target bondcentrictool +[ 39%] Built target manipulatetool make -f libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build.make libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' [ 39%] Generating moc_networkfetchextension.cxx @@ -6035,6 +6020,23 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 39%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/moc_bondcentrictool.cxx +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/QObject:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:35, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/../../../../libavogadro/src/tools/bondcentrictool.h:34, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/moc_bondcentrictool.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ [ 39%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/moc_aligntool.cxx.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daligntool_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/aligntool.dir/moc_aligntool.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/moc_aligntool.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, @@ -6067,8 +6069,6 @@ ^~~~~~~ [ 39%] Building CXX object libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dnetworkfetchextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_networkfetchextension.cxx -[ 39%] Linking CXX shared module ../../../lib/aligntool.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/aligntool.dir/link.txt --verbose=1 In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6087,6 +6087,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 39%] Linking CXX shared module ../../../lib/aligntool.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/aligntool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/aligntool.so CMakeFiles/aligntool.dir/aligntool.cpp.o CMakeFiles/aligntool.dir/moc_aligntool.cxx.o CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' [ 39%] Built target aligntool @@ -6123,18 +6125,26 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/moc_skeletontree.cxx +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/QObject:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:35, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/moc_skeletontree.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ [ 41%] Linking CXX shared module ../../../lib/networkfetchextension.so cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/networkfetchextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/networkfetchextension.so CMakeFiles/networkfetchextension.dir/networkfetchextension.cpp.o CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lQtNetwork -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 41%] Built target networkfetchextension -make -f libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build.make libavogadro/src/extensions/CMakeFiles/shaderextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 41%] Generating ui_shaderdialog.h -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/ui_shaderdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/shaderdialog.ui -[ 41%] Generating moc_shaderextension.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_shaderextension.cxx_parameters [ 41%] Building CXX object libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/moc_gl2psextension.cxx.o +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/networkfetchextension.so CMakeFiles/networkfetchextension.dir/networkfetchextension.cpp.o CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lQtNetwork cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgl2psextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gl2psextension.dir/moc_gl2psextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_gl2psextension.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -6154,6 +6164,14 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 41%] Built target networkfetchextension +make -f libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build.make libavogadro/src/extensions/CMakeFiles/shaderextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 41%] Generating ui_shaderdialog.h +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/ui_shaderdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/shaderdialog.ui +[ 41%] Generating moc_shaderextension.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_shaderextension.cxx_parameters cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/shaderextension.dir/DependInfo.cmake --color= Scanning dependencies of target shaderextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' @@ -6190,7 +6208,18 @@ cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/ui_fileimportdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/fileimportdialog.ui [ 41%] Generating moc_fileimportextension.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_fileimportextension.cxx_parameters +[ 41%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/qrc_bondcentrictool.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/DependInfo.cmake --color= +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/qrc_bondcentrictool.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ Scanning dependencies of target fileimportextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build.make libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build @@ -6211,6 +6240,40 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 42%] Linking CXX shared module ../../../lib/bondcentrictool.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/bondcentrictool.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/bondcentrictool.so CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 42%] Built target bondcentrictool +make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 42%] Generating moc_propextension.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_propextension.cxx_parameters +[ 42%] Generating __/tools/moc_skeletontree.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/__/tools && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx_parameters +[ 43%] Generating moc_propmodel.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_propmodel.cxx_parameters +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/propextension.dir/DependInfo.cmake --color= +Scanning dependencies of target propextension +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 43%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/QObject:1, + from /build/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:35, + from /build/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp:27: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ In file included from /usr/include/c++/8/vector:69, from /usr/include/qt4/QtCore/qvector.h:52, from /usr/include/qt4/QtCore/QVector:1, @@ -6225,7 +6288,7 @@ /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ -[ 42%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/supercelldialog.cpp.o +[ 43%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/supercelldialog.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/supercellextension.dir/supercelldialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/supercelldialog.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -6241,13 +6304,29 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 42%] Building CXX object libavogadro/src/extensions/CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o +[ 43%] Building CXX object libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dfileimportextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_fileimportextension.cxx +[ 43%] Building CXX object libavogadro/src/extensions/CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dshaderextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_shaderextension.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qatomic.h:45, + from /usr/include/qt4/QtCore/qvariant.h:45, + from /usr/include/qt4/QtCore/QVariant:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/ui_fileimportdialog.h:12, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/fileimportextension.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_fileimportextension.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, @@ -6261,7 +6340,7 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 42%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o +[ 43%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_supercellextension.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -6281,26 +6360,7 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 42%] Building CXX object libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dfileimportextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_fileimportextension.cxx -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qatomic.h:45, - from /usr/include/qt4/QtCore/qvariant.h:45, - from /usr/include/qt4/QtCore/QVariant:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/ui_fileimportdialog.h:12, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/fileimportextension.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_fileimportextension.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 42%] Linking CXX shared module ../../../lib/shaderextension.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/shaderextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/shaderextension.so CMakeFiles/shaderextension.dir/shaderextension.cpp.o CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -lGLEW -[ 42%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o +[ 43%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_supercelldialog.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -6316,61 +6376,20 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 43%] Linking CXX shared module ../../../lib/shaderextension.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/shaderextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/shaderextension.so CMakeFiles/shaderextension.dir/shaderextension.cpp.o CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -lGLEW make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 42%] Built target shaderextension -make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 42%] Generating moc_propextension.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_propextension.cxx_parameters -[ 42%] Generating __/tools/moc_skeletontree.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/__/tools && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx_parameters -[ 43%] Generating moc_propmodel.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_propmodel.cxx_parameters -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/propextension.dir/DependInfo.cmake --color= -Scanning dependencies of target propextension -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 43%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/QObject:1, - from /build/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:35, - from /build/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp:27: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 43%] Linking CXX shared module ../../../lib/supercellextension.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/supercellextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/supercellextension.so CMakeFiles/supercellextension.dir/supercellextension.cpp.o CMakeFiles/supercellextension.dir/supercelldialog.cpp.o CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -[ 43%] Linking CXX shared module ../../../lib/fileimportextension.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileimportextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/fileimportextension.so CMakeFiles/fileimportextension.dir/fileimportextension.cpp.o CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 43%] Built target supercellextension +[ 43%] Built target shaderextension make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' [ 43%] Generating qrc_cartesianextension.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/rcc -name cartesianextension -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qrc_cartesianextension.cxx /build/avogadro-1.2.0/libavogadro/src/extensions/cartesianextension.qrc [ 43%] Generating moc_cartesianextension.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_cartesianextension.cxx_parameters -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' [ 43%] Generating ui_cartesianeditor.h -[ 43%] Built target fileimportextension cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/ui_cartesianeditor.h /build/avogadro-1.2.0/libavogadro/src/extensions/cartesianeditor.ui -make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/DependInfo.cmake --color= -[ 43%] Generating moc_h2methylextension.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_h2methylextension.cxx_parameters -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/DependInfo.cmake --color= Scanning dependencies of target cartesianextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build @@ -6395,12 +6414,31 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 43%] Linking CXX shared module ../../../lib/fileimportextension.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileimportextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/fileimportextension.so CMakeFiles/fileimportextension.dir/fileimportextension.cpp.o CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +[ 43%] Linking CXX shared module ../../../lib/supercellextension.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/supercellextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/supercellextension.so CMakeFiles/supercellextension.dir/supercellextension.cpp.o CMakeFiles/supercellextension.dir/supercelldialog.cpp.o CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 43%] Built target fileimportextension +make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 43%] Generating moc_h2methylextension.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_h2methylextension.cxx_parameters +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' Scanning dependencies of target h2methylextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build +[ 43%] Built target supercellextension +make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' [ 43%] Building CXX object libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dh2methylextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/h2methylextension.cpp +[ 43%] Generating qrc_animationextension.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/rcc -name animationextension -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qrc_animationextension.cxx /build/avogadro-1.2.0/libavogadro/src/extensions/animationextension.qrc In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6419,8 +6457,19 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 43%] Building CXX object libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dh2methylextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_h2methylextension.cxx +[ 43%] Generating moc_animationextension.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_animationextension.cxx_parameters +[ 43%] Generating moc_animationdialog.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_animationdialog.cxx_parameters +[ 44%] Generating ui_animationdialog.h +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/ui_animationdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/animationdialog.ui +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/animationextension.dir/DependInfo.cmake --color= +Scanning dependencies of target animationextension +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/animationextension.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/animationextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/animationextension.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6434,35 +6483,13 @@ from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/h2methylextension.h:26, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_h2methylextension.cxx:9: + from /build/avogadro-1.2.0/libavogadro/src/extensions/animationextension.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/animationextension.cpp:24: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 43%] Linking CXX shared module ../../../lib/h2methylextension.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/h2methylextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/h2methylextension.so CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 43%] Built target h2methylextension -make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 43%] Generating qrc_animationextension.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/rcc -name animationextension -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qrc_animationextension.cxx /build/avogadro-1.2.0/libavogadro/src/extensions/animationextension.qrc -[ 43%] Generating moc_animationextension.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_animationextension.cxx_parameters -[ 43%] Generating moc_animationdialog.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_animationdialog.cxx_parameters -[ 44%] Generating ui_animationdialog.h -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/ui_animationdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/animationdialog.ui -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/animationextension.dir/DependInfo.cmake --color= -Scanning dependencies of target animationextension -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartesianextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_cartesianextension.cxx -[ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/animationextension.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/animationextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/animationextension.cpp +[ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dh2methylextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_h2methylextension.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6476,11 +6503,25 @@ from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/cartesianextension.h:26, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_cartesianextension.cxx:9: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/h2methylextension.h:26, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_h2methylextension.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/propmodel.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/propmodel.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/propmodel.cpp +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/cmath:41, + from /usr/include/c++/8/math.h:36, + from /usr/include/openbabel-2.0/openbabel/mol.h:31, + from /build/avogadro-1.2.0/libavogadro/src/extensions/propmodel.h:26, + from /build/avogadro-1.2.0/libavogadro/src/extensions/propmodel.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartesianextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_cartesianextension.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6494,27 +6535,34 @@ from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/animationextension.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/animationextension.cpp:24: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/cartesianextension.h:26, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_cartesianextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartesianextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qrc_cartesianextension.cxx +[ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/animationdialog.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/animationdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/animationdialog.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qrc_cartesianextension.cxx:9: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/animationdialog.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/animationdialog.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 45%] Linking CXX shared module ../../../lib/cartesianextension.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/cartesianextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/cartesianextension.so CMakeFiles/cartesianextension.dir/cartesianextension.cpp.o CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +[ 45%] Linking CXX shared module ../../../lib/h2methylextension.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/h2methylextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/h2methylextension.so CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 45%] Built target cartesianextension +[ 45%] Built target h2methylextension make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' [ 45%] Generating ui_conformersearchdialog.h @@ -6537,26 +6585,8 @@ Scanning dependencies of target forcefieldextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build -[ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/animationdialog.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/animationdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/animationdialog.cpp make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' [ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/animationdialog.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/animationdialog.cpp:22: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/forcefieldextension.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -6575,18 +6605,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/propmodel.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/propmodel.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/propmodel.cpp -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/cmath:41, - from /usr/include/c++/8/math.h:36, - from /usr/include/openbabel-2.0/openbabel/mol.h:31, - from /build/avogadro-1.2.0/libavogadro/src/extensions/propmodel.h:26, - from /build/avogadro-1.2.0/libavogadro/src/extensions/propmodel.cpp:25: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ [ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/povpainter.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/povpainter.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, @@ -6605,26 +6623,33 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -In file included from /usr/include/c++/8/vector:69, - from /usr/include/qt4/QtCore/qvector.h:52, - from /usr/include/qt4/QtGui/qbrush.h:47, - from /usr/include/qt4/QtGui/qpalette.h:47, - from /usr/include/qt4/QtGui/qwidget.h:50, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/forcefieldextension.h:26, - from /build/avogadro-1.2.0/libavogadro/src/extensions/forcefieldextension.cpp:23: -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Eigen::Matrix}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]': -/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 - vector<_Tp, _Alloc>:: - ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Eigen::Matrix}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]': -/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - _M_realloc_insert(end(), std::forward<_Args>(__args)...); - ^~~~~~~~~~~~~~~~~ -[ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.cpp +[ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartesianextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qrc_cartesianextension.cxx +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qrc_cartesianextension.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 46%] Linking CXX shared module ../../../lib/cartesianextension.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/cartesianextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/cartesianextension.so CMakeFiles/cartesianextension.dir/cartesianextension.cpp.o CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 46%] Built target cartesianextension +make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 46%] Generating moc_invertchiralextension.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_invertchiralextension.cxx_parameters +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/DependInfo.cmake --color= +Scanning dependencies of target invertchiralextension +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/invertchiralextension.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinvertchiralextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/invertchiralextension.dir/invertchiralextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/invertchiralextension.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6632,12 +6657,13 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.cpp:22: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/libavogadro/src/extensions/invertchiralextension.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/invertchiralextension.cpp:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -6686,20 +6712,62 @@ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ -[ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.cpp +In file included from /usr/include/c++/8/vector:69, + from /usr/include/qt4/QtCore/qvector.h:52, + from /usr/include/qt4/QtGui/qbrush.h:47, + from /usr/include/qt4/QtGui/qpalette.h:47, + from /usr/include/qt4/QtGui/qwidget.h:50, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/forcefieldextension.h:26, + from /build/avogadro-1.2.0/libavogadro/src/extensions/forcefieldextension.cpp:23: +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Eigen::Matrix}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]': +/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 + vector<_Tp, _Alloc>:: + ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Eigen::Matrix}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]': +/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + _M_realloc_insert(end(), std::forward<_Args>(__args)...); + ^~~~~~~~~~~~~~~~~ +[ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/moc_invertchiralextension.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinvertchiralextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/invertchiralextension.dir/moc_invertchiralextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_invertchiralextension.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/bits/stl_algobase.h:59, - from /usr/include/c++/8/vector:60, - from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, - from /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.h:26, - from /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.cpp:22: + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/invertchiralextension.h:25, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_invertchiralextension.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.cpp +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/propextension.cpp.o +[ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/propextension.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/propextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/propextension.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -6712,8 +6780,27 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/trajvideomaker.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/trajvideomaker.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/trajvideomaker.cpp +[ 47%] Linking CXX shared module ../../../lib/invertchiralextension.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/invertchiralextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/invertchiralextension.so CMakeFiles/invertchiralextension.dir/invertchiralextension.cpp.o CMakeFiles/invertchiralextension.dir/moc_invertchiralextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 47%] Built target invertchiralextension +make -f libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build.make libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 47%] Generating ui_vrmldialog.h +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/ui_vrmldialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.ui +/build/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.ui: Warning: Buddy assignment: 'dimX' is not a valid widget. +[ 47%] Generating moc_vrmlextension.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_vrmlextension.cxx_parameters +[ 47%] Generating moc_vrmldialog.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_vrmldialog.cxx_parameters +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/DependInfo.cmake --color= +Scanning dependencies of target vrmlextension +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build.make libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/vrmlextension.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vrmlextension.dir/vrmlextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/vrmlextension.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6721,30 +6808,31 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/libavogadro/src/extensions/trajvideomaker.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/trajvideomaker.cpp:22: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.h:30, + from /build/avogadro-1.2.0/libavogadro/src/extensions/vrmlextension.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/vrmlextension.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.cpp +[ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/bits/stl_algobase.h:59, from /usr/include/c++/8/vector:60, from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, from /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.h:26, - from /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.cpp:22: + from /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_animationextension.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/moc_animationextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_animationextension.cxx +[ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/trajvideomaker.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/trajvideomaker.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/trajvideomaker.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6756,10 +6844,9 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/plugin.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/animationextension.h:25, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_animationextension.cxx:9: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/libavogadro/src/extensions/trajvideomaker.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/trajvideomaker.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -6779,52 +6866,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_animationdialog.cxx -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/animationdialog.h:25, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_animationdialog.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/moc_propmodel.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/moc_propmodel.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_propmodel.cxx -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/cmath:41, - from /usr/include/c++/8/math.h:36, - from /usr/include/openbabel-2.0/openbabel/mol.h:31, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propmodel.h:26, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_propmodel.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/qrc_animationextension.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/qrc_animationextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qrc_animationextension.cxx -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qrc_animationextension.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 48%] Linking CXX shared module ../../../lib/animationextension.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/animationextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/animationextension.so CMakeFiles/animationextension.dir/animationextension.cpp.o CMakeFiles/animationextension.dir/animationdialog.cpp.o CMakeFiles/animationextension.dir/povpainter.cpp.o CMakeFiles/animationextension.dir/trajvideomaker.cpp.o CMakeFiles/animationextension.dir/moc_animationextension.cxx.o CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o CMakeFiles/animationextension.dir/qrc_animationextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -[ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.cpp +[ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/vrmlpainter.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vrmlextension.dir/vrmlpainter.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/vrmlpainter.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6832,28 +6875,17 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.cpp:22: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/vrmlpainter.h:4, + from /build/avogadro-1.2.0/libavogadro/src/extensions/vrmlpainter.cpp:3: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 48%] Built target animationextension -make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 48%] Generating moc_invertchiralextension.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_invertchiralextension.cxx_parameters -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/DependInfo.cmake --color= -Scanning dependencies of target invertchiralextension -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/invertchiralextension.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinvertchiralextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/invertchiralextension.dir/invertchiralextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/invertchiralextension.cpp +[ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_animationextension.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/moc_animationextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_animationextension.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6865,46 +6897,39 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/libavogadro/src/extensions/invertchiralextension.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/invertchiralextension.cpp:20: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/plugin.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/extension.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/animationextension.h:25, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_animationextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/moc_propextension.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/moc_propextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_propextension.cxx +[ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/moc_propmodel.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/moc_propmodel.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_propmodel.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/cmath:41, from /usr/include/c++/8/math.h:36, from /usr/include/openbabel-2.0/openbabel/mol.h:31, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propmodel.h:26, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propextension.h:25, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_propextension.cxx:9: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_propmodel.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/moc_invertchiralextension.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinvertchiralextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/invertchiralextension.dir/moc_invertchiralextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_invertchiralextension.cxx +[ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/invertchiralextension.h:25, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_invertchiralextension.cxx:9: + from /usr/include/c++/8/bits/stl_algobase.h:59, + from /usr/include/c++/8/vector:60, + from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, + from /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.h:26, + from /build/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_forcefieldextension.cxx +[ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_animationdialog.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6916,44 +6941,39 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefielddialog.h:25, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefieldextension.h:26, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_forcefieldextension.cxx:9: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/animationdialog.h:25, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_animationdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 49%] Linking CXX shared module ../../../lib/propextension.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/propextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/propextension.so CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o CMakeFiles/propextension.dir/propmodel.cpp.o CMakeFiles/propextension.dir/propextension.cpp.o CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o CMakeFiles/propextension.dir/moc_propmodel.cxx.o CMakeFiles/propextension.dir/moc_propextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -[ 49%] Linking CXX shared module ../../../lib/invertchiralextension.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/invertchiralextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/invertchiralextension.so CMakeFiles/invertchiralextension.dir/invertchiralextension.cpp.o CMakeFiles/invertchiralextension.dir/moc_invertchiralextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 49%] Built target propextension -make -f libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build.make libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 49%] Generating ui_vrmldialog.h -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/ui_vrmldialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.ui -/build/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.ui: Warning: Buddy assignment: 'dimX' is not a valid widget. -[ 49%] Generating moc_vrmlextension.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_vrmlextension.cxx_parameters +[ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/qrc_animationextension.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/qrc_animationextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qrc_animationextension.cxx +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qrc_animationextension.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 50%] Linking CXX shared module ../../../lib/animationextension.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/animationextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/animationextension.so CMakeFiles/animationextension.dir/animationextension.cpp.o CMakeFiles/animationextension.dir/animationdialog.cpp.o CMakeFiles/animationextension.dir/povpainter.cpp.o CMakeFiles/animationextension.dir/trajvideomaker.cpp.o CMakeFiles/animationextension.dir/moc_animationextension.cxx.o CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o CMakeFiles/animationextension.dir/qrc_animationextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 49%] Built target invertchiralextension +[ 50%] Built target animationextension make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 49%] Generating ui_insertpeptidedialog.h +[ 50%] Generating ui_insertpeptidedialog.h cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/ui_insertpeptidedialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/insertpeptidedialog.ui -[ 49%] Generating moc_insertpeptideextension.cxx +[ 50%] Generating moc_insertpeptideextension.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_insertpeptideextension.cxx_parameters cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/DependInfo.cmake --color= -[ 49%] Generating moc_vrmldialog.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_vrmldialog.cxx_parameters -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/DependInfo.cmake --color= Scanning dependencies of target insertpeptideextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o +[ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertpeptideextension.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -6973,12 +6993,21 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -Scanning dependencies of target vrmlextension -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build.make libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/vrmlextension.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vrmlextension.dir/vrmlextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/vrmlextension.cpp +[ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/moc_propextension.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/moc_propextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_propextension.cxx +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/cmath:41, + from /usr/include/c++/8/math.h:36, + from /usr/include/openbabel-2.0/openbabel/mol.h:31, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propmodel.h:26, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propextension.h:25, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_propextension.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -6990,14 +7019,22 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.h:30, - from /build/avogadro-1.2.0/libavogadro/src/extensions/vrmlextension.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/vrmlextension.cpp:25: + from /build/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_forcefielddialog.cxx +[ 50%] Linking CXX shared module ../../../lib/propextension.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/propextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/propextension.so CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o CMakeFiles/propextension.dir/propmodel.cpp.o CMakeFiles/propextension.dir/propextension.cpp.o CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o CMakeFiles/propextension.dir/moc_propmodel.cxx.o CMakeFiles/propextension.dir/moc_propextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 50%] Built target propextension +make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 50%] Generating moc_hydrogensextension.cxx +[ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/vrmldialog.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_hydrogensextension.cxx_parameters +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vrmlextension.dir/vrmldialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7009,13 +7046,18 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefielddialog.h:25, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_forcefielddialog.cxx:9: + from /build/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.h:30, + from /build/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/vrmlpainter.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vrmlextension.dir/vrmlpainter.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/vrmlpainter.cpp +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/DependInfo.cmake --color= +Scanning dependencies of target hydrogensextension +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhydrogensextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7027,21 +7069,28 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/vrmlpainter.h:4, - from /build/avogadro-1.2.0/libavogadro/src/extensions/vrmlpainter.cpp:3: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.h:26, + from /build/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_constraintsdialog.cxx +[ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_forcefieldextension.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/bits/stl_algobase.h:59, - from /usr/include/c++/8/vector:60, - from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:26, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsdialog.h:25, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_constraintsdialog.cxx:9: + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefielddialog.h:25, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefieldextension.h:26, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_forcefieldextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -7062,40 +7111,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_constraintsmodel.cxx -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/bits/stl_algobase.h:59, - from /usr/include/c++/8/vector:60, - from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:26, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_constraintsmodel.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_insertpeptideextension.cxx -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/plugin.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertpeptideextension.h:25, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_insertpeptideextension.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_conformersearchdialog.cxx +[ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/moc_vrmlextension.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vrmlextension.dir/moc_vrmlextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_vrmlextension.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7107,27 +7124,14 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/conformersearchdialog.h:25, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_conformersearchdialog.cxx:9: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vrmldialog.h:30, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vrmlextension.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_vrmlextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 50%] Linking CXX shared module ../../../lib/insertpeptideextension.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertpeptideextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/insertpeptideextension.so CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 50%] Built target insertpeptideextension -make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 50%] Generating moc_hydrogensextension.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_hydrogensextension.cxx_parameters -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/DependInfo.cmake --color= -Scanning dependencies of target hydrogensextension -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhydrogensextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.cpp +[ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhydrogensextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_hydrogensextension.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7140,13 +7144,13 @@ from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.h:26, - from /build/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.cpp:23: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/hydrogensextension.h:26, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_hydrogensextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/vrmldialog.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vrmlextension.dir/vrmldialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.cpp +[ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_forcefielddialog.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7158,29 +7162,13 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.h:30, - from /build/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.cpp:25: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefielddialog.h:25, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_forcefielddialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 50%] Linking CXX shared module ../../../lib/forcefieldextension.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/forcefieldextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/forcefieldextension.so CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 50%] Built target forcefieldextension -make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 50%] Generating ui_insertfragmentdialog.h -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/ui_insertfragmentdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.ui -[ 50%] Generating moc_insertfragmentextension.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_insertfragmentextension.cxx_parameters -[ 51%] Generating moc_insertfragmentdialog.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_insertfragmentdialog.cxx_parameters -[ 51%] Generating moc_sortfiltertreeproxymodel.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_sortfiltertreeproxymodel.cxx_parameters -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/DependInfo.cmake --color= -[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/moc_vrmlextension.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vrmlextension.dir/moc_vrmlextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_vrmlextension.cxx +[ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/moc_vrmldialog.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vrmlextension.dir/moc_vrmldialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_vrmldialog.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7193,17 +7181,12 @@ from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vrmldialog.h:30, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vrmlextension.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_vrmlextension.cxx:9: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_vrmldialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -Scanning dependencies of target insertfragmentextension -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentextension.cpp +[ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_insertpeptideextension.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7217,32 +7200,46 @@ from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentextension.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentextension.cpp:22: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertpeptideextension.h:25, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_insertpeptideextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhydrogensextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_hydrogensextension.cxx +[ 50%] Linking CXX shared module ../../../lib/hydrogensextension.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/hydrogensextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/hydrogensextension.so CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +[ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_constraintsdialog.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/hydrogensextension.h:26, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_hydrogensextension.cxx:9: + from /usr/include/c++/8/bits/stl_algobase.h:59, + from /usr/include/c++/8/vector:60, + from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:26, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsdialog.h:25, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_constraintsdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/moc_vrmldialog.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vrmlextension.dir/moc_vrmldialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_vrmldialog.cxx +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 50%] Built target hydrogensextension +make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 50%] Generating ui_insertfragmentdialog.h +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/ui_insertfragmentdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.ui +[ 50%] Generating moc_insertfragmentextension.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_insertfragmentextension.cxx_parameters +[ 51%] Generating moc_insertfragmentdialog.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_insertfragmentdialog.cxx_parameters +[ 51%] Generating moc_sortfiltertreeproxymodel.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_sortfiltertreeproxymodel.cxx_parameters +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/DependInfo.cmake --color= +Scanning dependencies of target insertfragmentextension +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentextension.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7250,31 +7247,45 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vrmldialog.h:30, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_vrmldialog.cxx:9: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/plugin.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/extension.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentextension.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentextension.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 51%] Linking CXX shared module ../../../lib/hydrogensextension.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/hydrogensextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/hydrogensextension.so CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +[ 51%] Linking CXX shared module ../../../lib/insertpeptideextension.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertpeptideextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/insertpeptideextension.so CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +[ 51%] Linking CXX shared module ../../../lib/vrmlextension.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/vrmlextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/vrmlextension.so CMakeFiles/vrmlextension.dir/vrmlextension.cpp.o CMakeFiles/vrmlextension.dir/vrmlpainter.cpp.o CMakeFiles/vrmlextension.dir/vrmldialog.cpp.o CMakeFiles/vrmlextension.dir/moc_vrmlextension.cxx.o CMakeFiles/vrmlextension.dir/moc_vrmldialog.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 51%] Built target hydrogensextension +[ 51%] Built target insertpeptideextension make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' [ 51%] Generating moc_selectextension.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_selectextension.cxx_parameters cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/selectextension.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 51%] Built target vrmlextension +make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 51%] Generating ui_insertdnadialog.h +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/ui_insertdnadialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/insertdnadialog.ui Scanning dependencies of target selectextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 51%] Generating moc_insertdnaextension.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_insertdnaextension.cxx_parameters [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/selectextension.dir/selectextension.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/selectextension.dir/selectextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/selectextension.cpp +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/DependInfo.cmake --color= In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7293,17 +7304,12 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 51%] Linking CXX shared module ../../../lib/vrmlextension.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/vrmlextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/vrmlextension.so CMakeFiles/vrmlextension.dir/vrmlextension.cpp.o CMakeFiles/vrmlextension.dir/vrmlpainter.cpp.o CMakeFiles/vrmlextension.dir/vrmldialog.cpp.o CMakeFiles/vrmlextension.dir/moc_vrmlextension.cxx.o CMakeFiles/vrmlextension.dir/moc_vrmldialog.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +Scanning dependencies of target insertdnaextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 51%] Built target vrmlextension -make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/depend +make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.cpp -[ 51%] Generating ui_insertdnadialog.h -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/ui_insertdnadialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/insertdnadialog.ui +[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/insertdnaextension.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertdnaextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertdnaextension.dir/insertdnaextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertdnaextension.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7315,20 +7321,27 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.cpp:25: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/plugin.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/extension.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/insertdnaextension.h:22, + from /build/avogadro-1.2.0/libavogadro/src/extensions/insertdnaextension.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 51%] Generating moc_insertdnaextension.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_insertdnaextension.cxx_parameters -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/DependInfo.cmake --color= -Scanning dependencies of target insertdnaextension -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/insertdnaextension.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertdnaextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertdnaextension.dir/insertdnaextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertdnaextension.cpp +[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_constraintsmodel.cxx +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/bits/stl_algobase.h:59, + from /usr/include/c++/8/vector:60, + from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:26, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_constraintsmodel.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7340,10 +7353,8 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/plugin.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/insertdnaextension.h:22, - from /build/avogadro-1.2.0/libavogadro/src/extensions/insertdnaextension.cpp:22: + from /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -7367,8 +7378,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp +[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/insertcommand.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertdnaextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertdnaextension.dir/insertcommand.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7384,6 +7395,24 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_conformersearchdialog.cxx +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/conformersearchdialog.h:25, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_conformersearchdialog.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ [ 51%] Linking CXX shared module ../../../lib/selectextension.so cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/selectextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/selectextension.so CMakeFiles/selectextension.dir/selectextension.cpp.o CMakeFiles/selectextension.dir/moc_selectextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel @@ -7393,25 +7422,8 @@ make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' [ 51%] Generating ui_molecularpropdialog.h cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/ui_molecularpropdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/molecularpropdialog.ui -[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/insertcommand.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertdnaextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertdnaextension.dir/insertcommand.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp [ 51%] Generating moc_molecularpropextension.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_molecularpropextension.cxx_parameters -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtGui/qundostack.h:45, - from /usr/include/qt4/QtGui/QUndoCommand:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp:27: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/DependInfo.cmake --color= Scanning dependencies of target molecularpropextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' @@ -7436,21 +7448,20 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/sortfiltertreeproxymodel.cpp +[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qatomic.h:45, - from /usr/include/qt4/QtCore/qvariant.h:45, - from /usr/include/qt4/QtCore/qabstractitemmodel.h:45, - from /usr/include/qt4/QtGui/qabstractproxymodel.h:45, - from /usr/include/qt4/QtGui/qsortfilterproxymodel.h:45, - from /usr/include/qt4/QtGui/QSortFilterProxyModel:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/sortfiltertreeproxymodel.h:22, - from /build/avogadro-1.2.0/libavogadro/src/extensions/sortfiltertreeproxymodel.cpp:19: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtGui/qundostack.h:45, + from /usr/include/qt4/QtGui/QUndoCommand:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -7474,64 +7485,36 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_insertfragmentextension.cxx -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/plugin.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertfragmentextension.h:25, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_insertfragmentextension.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 51%] Linking CXX shared module ../../../lib/insertdnaextension.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertdnaextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/insertdnaextension.so CMakeFiles/insertdnaextension.dir/insertdnaextension.cpp.o CMakeFiles/insertdnaextension.dir/insertcommand.cpp.o CMakeFiles/insertdnaextension.dir/moc_insertdnaextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +[ 51%] Linking CXX shared module ../../../lib/forcefieldextension.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/forcefieldextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/forcefieldextension.so CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 51%] Built target insertdnaextension +[ 51%] Built target forcefieldextension make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' [ 51%] Generating ui_pythonterminalwidget.h cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/ui_pythonterminalwidget.h /build/avogadro-1.2.0/libavogadro/src/extensions/pythonterminalwidget.ui +[ 51%] Linking CXX shared module ../../../lib/insertdnaextension.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertdnaextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/insertdnaextension.so CMakeFiles/insertdnaextension.dir/insertdnaextension.cpp.o CMakeFiles/insertdnaextension.dir/insertcommand.cpp.o CMakeFiles/insertdnaextension.dir/moc_insertdnaextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel [ 51%] Generating moc_pythonterminal.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_pythonterminal.cxx_parameters -[ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmolecularpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_molecularpropextension.cxx -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/molecularpropextension.h:25, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_molecularpropextension.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 53%] Generating moc_highlighter.cxx +[ 52%] Generating moc_highlighter.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_highlighter.cxx_parameters cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 52%] Built target insertdnaextension +make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 52%] Generating ui_povraydialog.h +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/ui_povraydialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.ui +[ 52%] Generating moc_povrayextension.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_povrayextension.cxx_parameters Scanning dependencies of target pythonterminal make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 53%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o +[ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/pythonterminal.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -7552,8 +7535,34 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 53%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_insertfragmentdialog.cxx +[ 53%] Generating moc_povraydialog.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_povraydialog.cxx_parameters +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/povrayextension.dir/DependInfo.cmake --color= +Scanning dependencies of target povrayextension +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 53%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povrayextension.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/povrayextension.dir/povrayextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/povrayextension.cpp +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.h:30, + from /build/avogadro-1.2.0/libavogadro/src/extensions/povrayextension.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/povrayextension.cpp:25: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 54%] Building CXX object libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmolecularpropextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_molecularpropextension.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7565,13 +7574,14 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertfragmentdialog.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_insertfragmentdialog.cxx:9: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/molecularpropextension.h:25, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_molecularpropextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 53%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_sortfiltertreeproxymodel.cxx +[ 54%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/sortfiltertreeproxymodel.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7583,66 +7593,13 @@ from /usr/include/qt4/QtGui/qabstractproxymodel.h:45, from /usr/include/qt4/QtGui/qsortfilterproxymodel.h:45, from /usr/include/qt4/QtGui/QSortFilterProxyModel:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/sortfiltertreeproxymodel.h:22, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_sortfiltertreeproxymodel.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 53%] Linking CXX shared module ../../../lib/molecularpropextension.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/molecularpropextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/molecularpropextension.so CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lQtNetwork -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 54%] Linking CXX shared module ../../../lib/insertfragmentextension.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertfragmentextension.dir/link.txt --verbose=1 -[ 54%] Built target molecularpropextension -make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/depend -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/insertfragmentextension.so CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 54%] Generating ui_povraydialog.h -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/ui_povraydialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.ui -[ 54%] Generating moc_povrayextension.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_povrayextension.cxx_parameters -[ 55%] Generating moc_povraydialog.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_povraydialog.cxx_parameters -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/povrayextension.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 55%] Built target insertfragmentextension -make -f libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build.make libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 56%] Generating ui_symmetrydialog.h -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry/ui_symmetrydialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/symmetrydialog.ui -[ 56%] Generating moc_symmetryextension.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry/moc_symmetryextension.cxx_parameters -Scanning dependencies of target povrayextension -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povrayextension.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/povrayextension.dir/povrayextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/povrayextension.cpp -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.h:30, - from /build/avogadro-1.2.0/libavogadro/src/extensions/povrayextension.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/povrayextension.cpp:25: + from /build/avogadro-1.2.0/libavogadro/src/extensions/sortfiltertreeproxymodel.h:22, + from /build/avogadro-1.2.0/libavogadro/src/extensions/sortfiltertreeproxymodel.cpp:19: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/DependInfo.cmake --color= -Scanning dependencies of target symmetryextension -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build.make libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 56%] Building CXX object libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/symmetryextension.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsymmetryextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/symmetryextension.dir/symmetryextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/symmetryextension.cpp +[ 54%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_insertfragmentextension.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7654,13 +7611,14 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/symmetryextension.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/symmetryextension.cpp:22: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/plugin.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/extension.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertfragmentextension.h:25, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_insertfragmentextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povpainter.cpp.o +[ 54%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povpainter.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/povrayextension.dir/povpainter.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -7678,22 +7636,42 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/highlighter.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/pythonterminal.dir/highlighter.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/highlighter.cpp +[ 54%] Linking CXX shared module ../../../lib/molecularpropextension.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/molecularpropextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/molecularpropextension.so CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lQtNetwork +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 54%] Built target molecularpropextension +make -f libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build.make libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 55%] Generating ui_symmetrydialog.h +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry/ui_symmetrydialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/symmetrydialog.ui +[ 55%] Generating moc_symmetryextension.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry/moc_symmetryextension.cxx_parameters +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/DependInfo.cmake --color= +[ 55%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_insertfragmentdialog.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45, - from /usr/include/qt4/QtGui/QSyntaxHighlighter:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/highlighter.h:22, - from /build/avogadro-1.2.0/libavogadro/src/extensions/highlighter.cpp:19: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertfragmentdialog.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_insertfragmentdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 56%] Building CXX object libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/moc_symmetryextension.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsymmetryextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/symmetryextension.dir/moc_symmetryextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry/moc_symmetryextension.cxx +Scanning dependencies of target symmetryextension +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build.make libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 55%] Building CXX object libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/symmetryextension.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsymmetryextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/symmetryextension.dir/symmetryextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/symmetryextension.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7706,37 +7684,34 @@ from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry/../../../../../libavogadro/src/extensions/symmetry/symmetryextension.h:25, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry/moc_symmetryextension.cxx:9: + from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/symmetryextension.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/symmetryextension.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_pythonterminal.cxx +[ 55%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_sortfiltertreeproxymodel.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/plugin.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/dockextension.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/pythonterminal.h:30, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_pythonterminal.cxx:9: + from /usr/include/qt4/QtCore/qatomic.h:45, + from /usr/include/qt4/QtCore/qvariant.h:45, + from /usr/include/qt4/QtCore/qabstractitemmodel.h:45, + from /usr/include/qt4/QtGui/qabstractproxymodel.h:45, + from /usr/include/qt4/QtGui/qsortfilterproxymodel.h:45, + from /usr/include/qt4/QtGui/QSortFilterProxyModel:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/sortfiltertreeproxymodel.h:22, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_sortfiltertreeproxymodel.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 56%] Linking CXX shared module ../../../../lib/symmetryextension.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry && /usr/bin/cmake -E cmake_link_script CMakeFiles/symmetryextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/symmetryextension.so CMakeFiles/symmetryextension.dir/symmetryextension.cpp.o CMakeFiles/symmetryextension.dir/moc_symmetryextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU libmsym/libmsym.a +[ 56%] Linking CXX shared module ../../../lib/insertfragmentextension.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertfragmentextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/insertfragmentextension.so CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 56%] Built target symmetryextension +[ 56%] Built target insertfragmentextension make -f libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build.make libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' [ 56%] Generating ui_ceviewoptionswidget.h @@ -7755,6 +7730,20 @@ cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/moc_cematrixeditor.cxx_parameters [ 57%] Generating ui/moc_ceparametereditor.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/moc_ceparametereditor.cxx_parameters +[ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/highlighter.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/pythonterminal.dir/highlighter.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/highlighter.cpp +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45, + from /usr/include/qt4/QtGui/QSyntaxHighlighter:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/highlighter.h:22, + from /build/avogadro-1.2.0/libavogadro/src/extensions/highlighter.cpp:19: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ [ 57%] Generating ui/moc_ceslabbuilder.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/moc_ceslabbuilder.cxx_parameters [ 57%] Generating ui/moc_cetranslatewidget.cxx @@ -7769,6 +7758,25 @@ cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui_cematrixeditor.h /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cematrixeditor.ui [ 58%] Generating ui_ceparametereditor.h cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui_ceparametereditor.h /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceparametereditor.ui +[ 58%] Building CXX object libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/moc_symmetryextension.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsymmetryextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry -I/build/avogadro-1.2.0/libavogadro/src/extensions/symmetry -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/symmetryextension.dir/moc_symmetryextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry/moc_symmetryextension.cxx +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry/../../../../../libavogadro/src/extensions/symmetry/symmetryextension.h:25, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry/moc_symmetryextension.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ [ 58%] Generating ui_ceslabbuilder.h cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui_ceslabbuilder.h /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.ui [ 58%] Generating ui_cetranslatewidget.h @@ -7789,8 +7797,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povraydialog.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/povrayextension.dir/povraydialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.cpp +[ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_pythonterminal.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7798,34 +7806,31 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.h:30, - from /build/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.cpp:25: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_highlighter.cxx -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45, - from /usr/include/qt4/QtGui/QSyntaxHighlighter:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/highlighter.h:22, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_highlighter.cxx:9: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/plugin.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/extension.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/dockextension.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/pythonterminal.h:30, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_pythonterminal.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 58%] Linking CXX shared module ../../../lib/pythonterminal.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/pythonterminal.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/pythonterminal.so CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o CMakeFiles/pythonterminal.dir/highlighter.cpp.o CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lpython2.7 -[ 58%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ceundo.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ceundo.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ceundo.cpp +[ 58%] Linking CXX shared module ../../../../lib/symmetryextension.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry && /usr/bin/cmake -E cmake_link_script CMakeFiles/symmetryextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/symmetryextension.so CMakeFiles/symmetryextension.dir/symmetryextension.cpp.o CMakeFiles/symmetryextension.dir/moc_symmetryextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU libmsym/libmsym.a +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 58%] Built target symmetryextension +make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 58%] Generating ui_tab_cd.h +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/ui_tab_cd.h /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/tab_cd.ui +[ 58%] Generating moc_spectraextension.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/moc_spectraextension.cxx_parameters +[ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povraydialog.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/povrayextension.dir/povraydialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -7835,25 +7840,13 @@ from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdockwidget.h:45, - from /usr/include/qt4/QtGui/QDockWidget:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/dockwidget.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.h:23, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ceundo.h:26, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ceundo.cpp:19: + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.h:30, + from /build/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 58%] Built target pythonterminal -make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 58%] Generating ui_tab_cd.h -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/ui_tab_cd.h /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/tab_cd.ui -[ 58%] Generating moc_spectraextension.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/moc_spectraextension.cxx_parameters [ 58%] Generating moc_spectradialog.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/moc_spectradialog.cxx_parameters [ 58%] Generating moc_spectratype.cxx @@ -7864,25 +7857,6 @@ cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/moc_ir.cxx_parameters [ 59%] Generating moc_nmr.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/moc_nmr.cxx_parameters -[ 59%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_povrayextension.cxx -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/povraydialog.h:30, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/povrayextension.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_povrayextension.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ [ 59%] Generating moc_dos.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/moc_dos.cxx_parameters [ 59%] Generating moc_uv.cxx @@ -7925,6 +7899,47 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 60%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ceundo.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ceundo.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ceundo.cpp +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdockwidget.h:45, + from /usr/include/qt4/QtGui/QDockWidget:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/dockwidget.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.h:23, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ceundo.h:26, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ceundo.cpp:19: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 60%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_povrayextension.cxx +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/povraydialog.h:30, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/povrayextension.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_povrayextension.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ [ 61%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/crystallographyextension.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/crystallographyextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, @@ -7964,9 +7979,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 61%] Linking CXX shared module ../../../lib/povrayextension.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/povrayextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/povrayextension.so CMakeFiles/povrayextension.dir/povrayextension.cpp.o CMakeFiles/povrayextension.dir/povpainter.cpp.o CMakeFiles/povrayextension.dir/povraydialog.cpp.o CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +[ 61%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_highlighter.cxx [ 61%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/spectradialog.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/spectradialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, @@ -7974,6 +7988,18 @@ from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45, + from /usr/include/qt4/QtGui/QSyntaxHighlighter:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/../../../../libavogadro/src/extensions/highlighter.h:22, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/moc_highlighter.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, @@ -7985,8 +8011,11 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 61%] Linking CXX shared module ../../../lib/pythonterminal.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/pythonterminal.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/pythonterminal.so CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o CMakeFiles/pythonterminal.dir/highlighter.cpp.o CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lpython2.7 make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 61%] Built target povrayextension +[ 61%] Built target pythonterminal make -f libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' [ 61%] Generating ui_vibrationwidget.h @@ -7995,6 +8024,9 @@ cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/moc_vibrationextension.cxx_parameters [ 61%] Generating moc_vibrationwidget.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/moc_vibrationwidget.cxx_parameters +[ 61%] Linking CXX shared module ../../../lib/povrayextension.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/povrayextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/povrayextension.so CMakeFiles/povrayextension.dir/povrayextension.cpp.o CMakeFiles/povrayextension.dir/povpainter.cpp.o CMakeFiles/povrayextension.dir/povraydialog.cpp.o CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/DependInfo.cmake --color= Scanning dependencies of target vibrationextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' @@ -8002,6 +8034,7 @@ make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' [ 62%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationextension.cpp +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8018,7 +8051,54 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 62%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/vibrationwidget.cpp.o +[ 62%] Built target povrayextension +make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 63%] Generating ui_orbitalsettingsdialog.h +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/ui_orbitalsettingsdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.ui +[ 63%] Generating moc_orbitalextension.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_orbitalextension.cxx_parameters +[ 63%] Generating moc_orbitalsettingsdialog.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_orbitalsettingsdialog.cxx_parameters +[ 63%] Generating moc_orbitaltablemodel.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_orbitaltablemodel.cxx_parameters +[ 63%] Generating moc_orbitalwidget.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_orbitalwidget.cxx_parameters +[ 63%] Generating moc_vdwsurface.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx_parameters +[ 63%] Generating qtiocompressor/moc_qtiocompressor.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/qtiocompressor && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx_parameters +[ 63%] Generating moc_htmldelegate.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_htmldelegate.cxx_parameters +[ 63%] Generating ui_orbitalwidget.h +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/ui_orbitalwidget.h /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.ui +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/DependInfo.cmake --color= +Scanning dependencies of target orbitalextension +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 63%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalextension.cpp +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/plugin.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/extension.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/dockextension.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalextension.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalextension.cpp:25: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 63%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/vibrationwidget.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vibrationextension.dir/vibrationwidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -8035,6 +8115,42 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 63%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalsettingsdialog.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/orbitalsettingsdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.cpp +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.cpp:25: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 63%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/spectratype.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/spectratype.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectratype.cpp +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectratype.h:24, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectratype.cpp:21: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ In file included from /usr/include/c++/8/vector:69, from /usr/include/qt4/QtCore/qvector.h:52, from /usr/include/qt4/QtGui/qbrush.h:47, @@ -8055,8 +8171,8 @@ /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ -[ 62%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/spectratype.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/spectratype.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectratype.cpp +[ 63%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitaltablemodel.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/orbitaltablemodel.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitaltablemodel.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8064,16 +8180,20 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectratype.h:24, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectratype.cpp:21: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/plugin.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/extension.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/dockextension.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalextension.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitaltablemodel.h:22, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitaltablemodel.cpp:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 62%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o +[ 63%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/moc_vibrationextension.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -8091,7 +8211,7 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 62%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/abstract_ir.cpp.o +[ 63%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/abstract_ir.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/abstract_ir.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/abstract_ir.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -8110,7 +8230,24 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 62%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o +[ 63%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalwidget.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/orbitalwidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.cpp +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/QWidget:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.h:22, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.cpp:19: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 63%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystalpastedialog.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -8130,7 +8267,7 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 62%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/moc_vibrationwidget.cxx.o +[ 63%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/moc_vibrationwidget.cxx.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vibrationextension.dir/moc_vibrationwidget.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/moc_vibrationwidget.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -8147,23 +8284,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 62%] Linking CXX shared module ../../../../lib/vibrationextension.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra && /usr/bin/cmake -E cmake_link_script CMakeFiles/vibrationextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/vibrationextension.so CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o CMakeFiles/vibrationextension.dir/vibrationwidget.cpp.o CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o CMakeFiles/vibrationextension.dir/moc_vibrationwidget.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 62%] Built target vibrationextension -make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 63%] Generating ui_orbitalsettingsdialog.h -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/ui_orbitalsettingsdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.ui -[ 63%] Generating moc_orbitalextension.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_orbitalextension.cxx_parameters -[ 63%] Generating moc_orbitalsettingsdialog.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_orbitalsettingsdialog.cxx_parameters -[ 63%] Generating moc_orbitaltablemodel.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_orbitaltablemodel.cxx_parameters -[ 63%] Generating moc_orbitalwidget.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_orbitalwidget.cxx_parameters [ 63%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/ir.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/ir.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/ir.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, @@ -8184,21 +8304,11 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 63%] Generating moc_vdwsurface.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx_parameters -[ 63%] Generating qtiocompressor/moc_qtiocompressor.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/qtiocompressor && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx_parameters -[ 63%] Generating moc_htmldelegate.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_htmldelegate.cxx_parameters -[ 63%] Generating ui_orbitalwidget.h -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/ui_orbitalwidget.h /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.ui -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/DependInfo.cmake --color= -Scanning dependencies of target orbitalextension -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 63%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalextension.cpp +[ 63%] Linking CXX shared module ../../../../lib/vibrationextension.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra && /usr/bin/cmake -E cmake_link_script CMakeFiles/vibrationextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/vibrationextension.so CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o CMakeFiles/vibrationextension.dir/vibrationwidget.cpp.o CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o CMakeFiles/vibrationextension.dir/moc_vibrationwidget.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +[ 63%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8207,19 +8317,29 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/plugin.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/dockextension.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalextension.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalextension.cpp:25: + from /usr/include/qt4/QtCore/QObject:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.h:31, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 63%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.cpp +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 63%] Built target vibrationextension +make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 63%] Generating ui_surfacedialog.h +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/ui_surfacedialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.ui +[ 63%] Generating moc_surfaceextension.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_surfaceextension.cxx_parameters +[ 63%] Generating moc_surfacedialog.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_surfacedialog.cxx_parameters +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/DependInfo.cmake --color= +Scanning dependencies of target surfaceextension +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 63%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfaceextension.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8229,16 +8349,16 @@ from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdockwidget.h:45, - from /usr/include/qt4/QtGui/QDockWidget:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/dockwidget.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.cpp:18: + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.h:30, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfaceextension.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfaceextension.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 63%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.cpp +[ 63%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8250,8 +8370,9 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.cpp:18: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/dockwidget.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.cpp:18: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -8289,8 +8410,25 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 64%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.cpp +[ 64%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/qtiocompressor/qtiocompressor.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/qtiocompressor/qtiocompressor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp +[ 64%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.cpp +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qiodevice.h:46, + from /usr/include/qt4/QtCore/QIODevice:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp:47: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8303,13 +8441,30 @@ from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.cpp:18: + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.cpp:18: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 64%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalsettingsdialog.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/orbitalsettingsdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.cpp +[ 64%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/htmldelegate.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/htmldelegate.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/htmldelegate.cpp +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtGui/qabstractitemdelegate.h:45, + from /usr/include/qt4/QtGui/qstyleditemdelegate.h:45, + from /usr/include/qt4/QtGui/QStyledItemDelegate:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/htmldelegate.h:22, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/htmldelegate.cpp:19: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 64%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8321,8 +8476,27 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.cpp:25: + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.h:30, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.cpp:25: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 64%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.cpp +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdockwidget.h:45, + from /usr/include/qt4/QtGui/QDockWidget:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.cpp:18: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -8336,8 +8510,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 64%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitaltablemodel.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/orbitaltablemodel.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitaltablemodel.cpp +[ 64%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_orbitalextension.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8352,9 +8526,42 @@ from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/plugin.h:29, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/extension.h:28, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/dockextension.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalextension.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitaltablemodel.h:22, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitaltablemodel.cpp:20: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalextension.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_orbitalextension.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 64%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalsettingsdialog.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitalsettingsdialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_orbitalsettingsdialog.cxx +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalsettingsdialog.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_orbitalsettingsdialog.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 64%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.cpp +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/QObject:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.h:31, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -8386,23 +8593,6 @@ ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 -[ 64%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalwidget.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/orbitalwidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.cpp -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/QWidget:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.h:22, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.cpp:19: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ In file included from /usr/include/c++/8/vector:64, from /usr/include/openbabel-2.0/openbabel/generic.h:26, from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/dos.cpp:20: @@ -8416,7 +8606,56 @@ /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ -[ 64%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o +[ 64%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/uv.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/uv.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/uv.cpp +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/string:38, + from /usr/include/openbabel-2.0/openbabel/generic.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/uv.cpp:20: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 65%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitaltablemodel.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitaltablemodel.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_orbitaltablemodel.cxx +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/plugin.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/extension.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/dockextension.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalextension.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitaltablemodel.h:22, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_orbitaltablemodel.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 65%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalwidget.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitalwidget.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_orbitalwidget.cxx +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/QWidget:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalwidget.h:22, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_orbitalwidget.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 65%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceparametereditor.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -8435,17 +8674,69 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 64%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/uv.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/uv.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/uv.cpp +[ 66%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/qtiocompressor/qtiocompressor.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/qtiocompressor/qtiocompressor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qiodevice.h:46, + from /usr/include/qt4/QtCore/QIODevice:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, + from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp:47: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 66%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/cd.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/cd.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/cd.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/string:38, from /usr/include/openbabel-2.0/openbabel/generic.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/uv.cpp:20: + from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/cd.cpp:20: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 66%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_surfaceextension.cxx +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/surfacedialog.h:30, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/surfaceextension.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_surfaceextension.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 66%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/QObject:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/vdwsurface.h:31, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 64%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o +[ 66%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -8465,8 +8756,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 64%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.cpp +[ 66%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8475,23 +8766,50 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/QObject:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.h:31, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.cpp:26: + from /usr/include/qt4/QtCore/qiodevice.h:46, + from /usr/include/qt4/QtCore/QIODevice:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/qtiocompressor/../../../../../../libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 64%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/cd.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/cd.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/cd.cpp +[ 66%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_surfacedialog.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/string:38, - from /usr/include/openbabel-2.0/openbabel/generic.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/cd.cpp:20: + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/surfacedialog.h:30, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_surfacedialog.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 66%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_htmldelegate.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_htmldelegate.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_htmldelegate.cxx +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtGui/qabstractitemdelegate.h:45, + from /usr/include/qt4/QtGui/qstyleditemdelegate.h:45, + from /usr/include/qt4/QtGui/QStyledItemDelegate:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/htmldelegate.h:22, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_htmldelegate.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 64%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/raman.cpp.o +[ 66%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/raman.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/raman.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/spectra/raman.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -8501,8 +8819,61 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 64%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/qtiocompressor/qtiocompressor.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/qtiocompressor/qtiocompressor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp +[ 66%] Linking CXX shared module ../../../../lib/orbitalextension.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/cmake -E cmake_link_script CMakeFiles/orbitalextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/orbitalextension.so CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o CMakeFiles/orbitalextension.dir/orbitalsettingsdialog.cpp.o CMakeFiles/orbitalextension.dir/orbitaltablemodel.cpp.o CMakeFiles/orbitalextension.dir/orbitalwidget.cpp.o CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o CMakeFiles/orbitalextension.dir/qtiocompressor/qtiocompressor.cpp.o CMakeFiles/orbitalextension.dir/htmldelegate.cpp.o CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o CMakeFiles/orbitalextension.dir/moc_orbitalsettingsdialog.cxx.o CMakeFiles/orbitalextension.dir/moc_orbitaltablemodel.cxx.o CMakeFiles/orbitalextension.dir/moc_orbitalwidget.cxx.o CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o CMakeFiles/orbitalextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o CMakeFiles/orbitalextension.dir/moc_htmldelegate.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../../lib/libavogadro_OpenQube.so.0.1.0 ../../../../lib/libavogadro.so.1.2.0 -lz -lQtCore -lQtGui -lopenbabel +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 66%] Built target orbitalextension +make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/depend +[ 66%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/QObject:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/vdwsurface.h:31, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 66%] Generating ui_swcntbuilderwidget.h +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/ui_swcntbuilderwidget.h /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.ui +[ 66%] Generating moc_swcntbuilderextension.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderextension.cxx_parameters +[ 66%] Generating moc_swcntbuilderwidget.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderwidget.cxx_parameters +[ 66%] Generating moc_avotubegen.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/moc_avotubegen.cxx_parameters +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/DependInfo.cmake --color= +Scanning dependencies of target swcntbuilderextension +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 67%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/__/insertcommand.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/__/insertcommand.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtGui/qundostack.h:45, + from /usr/include/qt4/QtGui/QUndoCommand:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp:27: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 67%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8513,8 +8884,27 @@ from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qiodevice.h:46, from /usr/include/qt4/QtCore/QIODevice:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp:47: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/qtiocompressor/../../../../../../libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 67%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/moc_spectraextension.cxx +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectraextension.h:25, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/moc_spectraextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -8554,6 +8944,9 @@ __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 +[ 67%] Linking CXX shared module ../../../../lib/surfaceextension.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/cmake -E cmake_link_script CMakeFiles/surfaceextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/surfaceextension.so CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o CMakeFiles/surfaceextension.dir/qtiocompressor/qtiocompressor.cpp.o CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o CMakeFiles/surfaceextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../../lib/libavogadro_OpenQube.so.0.1.0 ../../../../lib/libavogadro.so.1.2.0 -lz -lQtCore -lQtGui -lopenbabel In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /usr/include/qt4/QtCore/qglobal.h:68, @@ -8595,8 +8988,19 @@ /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 64%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/htmldelegate.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/htmldelegate.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/htmldelegate.cpp +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 67%] Built target surfaceextension +make -f libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 67%] Generating moc_qtaimextension.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim/moc_qtaimextension.cxx_parameters +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/DependInfo.cmake --color= +Scanning dependencies of target qtaimextension +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 67%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimextension.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimextension.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8605,11 +9009,13 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtGui/qabstractitemdelegate.h:45, - from /usr/include/qt4/QtGui/qstyleditemdelegate.h:45, - from /usr/include/qt4/QtGui/QStyledItemDelegate:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/htmldelegate.h:22, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/htmldelegate.cpp:19: + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/plugin.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/extension.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimextension.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimextension.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -8665,27 +9071,8 @@ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 64%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/moc_spectraextension.cxx -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectraextension.h:25, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/moc_spectraextension.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 64%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_orbitalextension.cxx +[ 67%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8697,16 +9084,13 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/plugin.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/dockextension.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalextension.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_orbitalextension.cxx:9: + from /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.cpp:18: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 64%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalsettingsdialog.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitalsettingsdialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_orbitalsettingsdialog.cxx +[ 67%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/moc_spectradialog.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8718,15 +9102,13 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalsettingsdialog.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_orbitalsettingsdialog.cxx:9: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/moc_spectradialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 64%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/moc_spectradialog.cxx -[ 64%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.cpp +[ 67%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8736,13 +9118,16 @@ from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/moc_spectradialog.cxx:9: + from /usr/include/qt4/QtGui/qdockwidget.h:45, + from /usr/include/qt4/QtGui/QDockWidget:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/dockwidget.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.cpp:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 67%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8761,30 +9146,22 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 65%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitaltablemodel.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitaltablemodel.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_orbitaltablemodel.cxx +[ 67%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimwavefunction.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimwavefunction.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunction.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/plugin.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/dockextension.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalextension.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitaltablemodel.h:22, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_orbitaltablemodel.cxx:9: + from /usr/include/qt4/QtCore/qalgorithms.h:45, + from /usr/include/qt4/QtCore/qdebug.h:45, + from /usr/include/qt4/QtCore/QDebug:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunction.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 65%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalwidget.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitalwidget.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_orbitalwidget.cxx +[ 67%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/moc_spectratype.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8794,14 +9171,31 @@ from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/QWidget:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalwidget.h:22, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_orbitalwidget.cxx:9: + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectratype.h:24, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/moc_spectratype.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 65%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/moc_spectratype.cxx +[ 67%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/avotubegen.cpp +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/QObject:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/avotubegen.h:21, + from /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/avotubegen.cpp:18: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 67%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/moc_abstract_ir.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8813,12 +9207,13 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectratype.h:24, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/moc_spectratype.cxx:9: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/abstract_ir.h:24, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/moc_abstract_ir.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 66%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceviewoptionswidget.cpp.o +[ 68%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceviewoptionswidget.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceviewoptionswidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -8838,8 +9233,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 66%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx +[ 68%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderextension.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8848,33 +9243,25 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/QObject:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/vdwsurface.h:31, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx:9: + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/../../../../../libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.h:21, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 66%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/moc_abstract_ir.cxx +[ 68%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/abstract_ir.h:24, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/moc_abstract_ir.cxx:9: + from /usr/include/c++/8/cmath:41, + from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 66%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx +[ 68%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderwidget.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8882,16 +9269,18 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qiodevice.h:46, - from /usr/include/qt4/QtCore/QIODevice:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/qtiocompressor/../../../../../../libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx:9: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdockwidget.h:45, + from /usr/include/qt4/QtGui/QDockWidget:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/dockwidget.h:21, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/../../../../../libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.h:21, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderwidget.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 66%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_htmldelegate.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_htmldelegate.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_htmldelegate.cxx +[ 68%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_ir.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_ir.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/moc_ir.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8899,20 +9288,19 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtGui/qabstractitemdelegate.h:45, - from /usr/include/qt4/QtGui/qstyleditemdelegate.h:45, - from /usr/include/qt4/QtGui/QStyledItemDelegate:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/htmldelegate.h:22, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_htmldelegate.cxx:9: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/abstract_ir.h:24, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/ir.h:23, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/moc_ir.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 66%] Linking CXX shared module ../../../../lib/orbitalextension.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/cmake -E cmake_link_script CMakeFiles/orbitalextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/orbitalextension.so CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o CMakeFiles/orbitalextension.dir/orbitalsettingsdialog.cpp.o CMakeFiles/orbitalextension.dir/orbitaltablemodel.cpp.o CMakeFiles/orbitalextension.dir/orbitalwidget.cpp.o CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o CMakeFiles/orbitalextension.dir/qtiocompressor/qtiocompressor.cpp.o CMakeFiles/orbitalextension.dir/htmldelegate.cpp.o CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o CMakeFiles/orbitalextension.dir/moc_orbitalsettingsdialog.cxx.o CMakeFiles/orbitalextension.dir/moc_orbitaltablemodel.cxx.o CMakeFiles/orbitalextension.dir/moc_orbitalwidget.cxx.o CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o CMakeFiles/orbitalextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o CMakeFiles/orbitalextension.dir/moc_htmldelegate.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../../lib/libavogadro_OpenQube.so.0.1.0 ../../../../lib/libavogadro.so.1.2.0 -lz -lQtCore -lQtGui -lopenbabel -[ 66%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_ir.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_ir.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/moc_ir.cxx +[ 68%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/moc_avotubegen.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8920,34 +9308,41 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/abstract_ir.h:24, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/ir.h:23, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/moc_ir.cxx:9: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/QObject:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/../../../../../libavogadro/src/extensions/swcntbuilder/avotubegen.h:21, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/moc_avotubegen.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 68%] Linking CXX shared module ../../../../lib/swcntbuilderextension.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder && /usr/bin/cmake -E cmake_link_script CMakeFiles/swcntbuilderextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/swcntbuilderextension.so CMakeFiles/swcntbuilderextension.dir/__/insertcommand.cpp.o CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU tubegen/libtubegen.a make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 66%] Built target orbitalextension -make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/depend +[ 68%] Built target swcntbuilderextension +make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 66%] Generating ui_surfacedialog.h -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/ui_surfacedialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.ui -[ 66%] Generating moc_surfaceextension.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_surfaceextension.cxx_parameters -[ 66%] Generating moc_surfacedialog.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_surfacedialog.cxx_parameters -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/DependInfo.cmake --color= -Scanning dependencies of target surfaceextension +[ 68%] Generating ui_gamessefpmatchdialog.h +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/ui_gamessefpmatchdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.ui +[ 68%] Generating moc_inputdialog.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx_parameters +[ 68%] Generating moc_gamessextension.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_gamessextension.cxx_parameters +[ 69%] Generating moc_gamessinputdialog.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_gamessinputdialog.cxx_parameters +[ 69%] Generating moc_gamesshighlighter.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_gamesshighlighter.cxx_parameters +[ 69%] Generating moc_gamessefpmatchdialog.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_gamessefpmatchdialog.cxx_parameters +[ 69%] Generating ui_gamessinputdialog.h +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/ui_gamessinputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.ui +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/DependInfo.cmake --color= +Scanning dependencies of target gamessextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build +make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 66%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfaceextension.cpp +[ 69%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/inputdialog.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/inputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8955,17 +9350,18 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.h:30, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfaceextension.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfaceextension.cpp:27: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 67%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_nmr.cxx.o +[ 70%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_nmr.cxx.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_nmr.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/moc_nmr.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -8980,8 +9376,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 67%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.cpp +[ 70%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessextension.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/gamessextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessextension.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -8993,12 +9389,28 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.h:30, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.cpp:25: + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessextension.h:26, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessextension.cpp:23: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 70%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimodeintegrator.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimodeintegrator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimodeintegrator.cpp +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qalgorithms.h:45, + from /usr/include/qt4/QtCore/qdebug.h:45, + from /usr/include/qt4/QtCore/QDebug:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimodeintegrator.h:30, + from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimodeintegrator.cpp:29: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 67%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_dos.cxx.o +[ 70%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_dos.cxx.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_dos.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/moc_dos.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -9013,7 +9425,7 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 67%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o +[ 70%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/moc_crystallographyextension.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -9034,27 +9446,22 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 67%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/moc_crystalpastedialog.cxx +[ 70%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimcriticalpointlocator.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimcriticalpointlocator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/crystalpastedialog.h:21, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/moc_crystalpastedialog.cxx:9: + from /usr/include/qt4/QtCore/qalgorithms.h:45, + from /usr/include/qt4/QtCore/qdebug.h:45, + from /usr/include/qt4/QtCore/QDebug:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 67%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_uv.cxx.o +[ 70%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_uv.cxx.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_uv.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/moc_uv.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -9069,8 +9476,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 67%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.cpp +[ 70%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/moc_crystalpastedialog.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9079,14 +9486,18 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/QObject:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.h:31, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.cpp:26: + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/crystalpastedialog.h:21, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/moc_crystalpastedialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 67%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/moc_ceabstractdockwidget.cxx +[ 70%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9096,15 +9507,14 @@ from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdockwidget.h:45, - from /usr/include/qt4/QtGui/QDockWidget:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/dockwidget.h:21, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/moc_ceabstractdockwidget.cxx:9: + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 67%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_cd.cxx.o +[ 70%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_cd.cxx.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_cd.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/moc_cd.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -9119,8 +9529,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 67%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/moc_ceabstracteditor.cxx +[ 70%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/moc_ceabstractdockwidget.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9132,30 +9542,16 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/moc_ceabstracteditor.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 68%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/qtiocompressor/qtiocompressor.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/qtiocompressor/qtiocompressor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qiodevice.h:46, - from /usr/include/qt4/QtCore/QIODevice:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, - from /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp:47: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/dockwidget.h:21, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/moc_ceabstractdockwidget.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 68%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/moc_cecoordinateeditor.cxx +[ 70%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/moc_ceabstracteditor.cxx +[ 70%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimmathutilities.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimmathutilities.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9168,31 +9564,22 @@ from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.h:21, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/moc_cecoordinateeditor.cxx:9: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/moc_ceabstracteditor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 68%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_surfaceextension.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/surfacedialog.h:30, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/surfaceextension.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_surfaceextension.cxx:9: + from /usr/include/qt4/QtCore/QtGlobal:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 68%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_raman.cxx.o +[ 70%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_raman.cxx.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_raman.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/moc_raman.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -9212,8 +9599,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 68%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_cematrixeditor.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_cematrixeditor.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/moc_cematrixeditor.cxx +[ 70%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/moc_cecoordinateeditor.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9226,31 +9613,13 @@ from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/cematrixeditor.h:23, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/moc_cematrixeditor.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 68%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_surfacedialog.cxx -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/surfacedialog.h:30, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_surfacedialog.cxx:9: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.h:21, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/moc_cecoordinateeditor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 68%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceparametereditor.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceparametereditor.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/moc_ceparametereditor.cxx +[ 70%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_cematrixeditor.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_cematrixeditor.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/moc_cematrixeditor.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9263,336 +9632,16 @@ from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceparametereditor.h:21, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/moc_ceparametereditor.cxx:9: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/cematrixeditor.h:23, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/moc_cematrixeditor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 68%] Linking CXX shared module ../../../../lib/spectraextension.so +[ 70%] Linking CXX shared module ../../../../lib/spectraextension.so cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra && /usr/bin/cmake -E cmake_link_script CMakeFiles/spectraextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/spectraextension.so CMakeFiles/spectraextension.dir/spectraextension.cpp.o CMakeFiles/spectraextension.dir/spectradialog.cpp.o CMakeFiles/spectraextension.dir/spectratype.cpp.o CMakeFiles/spectraextension.dir/abstract_ir.cpp.o CMakeFiles/spectraextension.dir/ir.cpp.o CMakeFiles/spectraextension.dir/nmr.cpp.o CMakeFiles/spectraextension.dir/dos.cpp.o CMakeFiles/spectraextension.dir/uv.cpp.o CMakeFiles/spectraextension.dir/cd.cpp.o CMakeFiles/spectraextension.dir/raman.cpp.o CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o CMakeFiles/spectraextension.dir/moc_ir.cxx.o CMakeFiles/spectraextension.dir/moc_nmr.cxx.o CMakeFiles/spectraextension.dir/moc_dos.cxx.o CMakeFiles/spectraextension.dir/moc_uv.cxx.o CMakeFiles/spectraextension.dir/moc_cd.cxx.o CMakeFiles/spectraextension.dir/moc_raman.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -[ 68%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/QObject:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/vdwsurface.h:31, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 68%] Built target spectraextension -make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 68%] Generating ui_swcntbuilderwidget.h -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/ui_swcntbuilderwidget.h /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.ui -[ 68%] Generating moc_swcntbuilderextension.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderextension.cxx_parameters -[ 68%] Generating moc_swcntbuilderwidget.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderwidget.cxx_parameters -[ 68%] Generating moc_avotubegen.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/moc_avotubegen.cxx_parameters -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/DependInfo.cmake --color= -Scanning dependencies of target swcntbuilderextension -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 69%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/__/insertcommand.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/__/insertcommand.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtGui/qundostack.h:45, - from /usr/include/qt4/QtGui/QUndoCommand:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp:27: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 69%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceslabbuilder.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceslabbuilder.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/moc_ceslabbuilder.cxx -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdockwidget.h:45, - from /usr/include/qt4/QtGui/QDockWidget:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/dockwidget.h:21, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/moc_ceslabbuilder.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 69%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces -I/build/avogadro-1.2.0/libavogadro/src/extensions/surfaces -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qiodevice.h:46, - from /usr/include/qt4/QtCore/QIODevice:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/qtiocompressor/../../../../../../libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 69%] Linking CXX shared module ../../../../lib/surfaceextension.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces && /usr/bin/cmake -E cmake_link_script CMakeFiles/surfaceextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/surfaceextension.so CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o CMakeFiles/surfaceextension.dir/qtiocompressor/qtiocompressor.cpp.o CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o CMakeFiles/surfaceextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../../lib/libavogadro_OpenQube.so.0.1.0 ../../../../lib/libavogadro.so.1.2.0 -lz -lQtCore -lQtGui -lopenbabel -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 69%] Built target surfaceextension -make -f libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 69%] Generating moc_qtaimextension.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim/moc_qtaimextension.cxx_parameters -[ 69%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_cetranslatewidget.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_cetranslatewidget.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/moc_cetranslatewidget.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/DependInfo.cmake --color= -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdockwidget.h:45, - from /usr/include/qt4/QtGui/QDockWidget:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/dockwidget.h:21, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/cetranslatewidget.h:23, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/moc_cetranslatewidget.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -Scanning dependencies of target qtaimextension -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 69%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimextension.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimextension.cpp -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/plugin.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimextension.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimextension.cpp:25: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 69%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.cpp -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.cpp:18: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 70%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/moc_ceviewoptionswidget.cxx -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdockwidget.h:45, - from /usr/include/qt4/QtGui/QDockWidget:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/dockwidget.h:21, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.h:21, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/moc_ceviewoptionswidget.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 70%] Linking CXX shared module ../../../../lib/crystallographyextension.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography && /usr/bin/cmake -E cmake_link_script CMakeFiles/crystallographyextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/crystallographyextension.so CMakeFiles/crystallographyextension.dir/avospglib.cpp.o CMakeFiles/crystallographyextension.dir/ceundo.cpp.o CMakeFiles/crystallographyextension.dir/crystallographyextension.cpp.o CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/cematrixeditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceviewoptionswidget.cpp.o CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cematrixeditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceparametereditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceslabbuilder.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cetranslatewidget.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -lsymspg -[ 70%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.cpp -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdockwidget.h:45, - from /usr/include/qt4/QtGui/QDockWidget:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/dockwidget.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.cpp:20: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 70%] Built target crystallographyextension -make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 70%] Generating ui_gamessefpmatchdialog.h -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/ui_gamessefpmatchdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.ui -[ 70%] Generating moc_inputdialog.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx_parameters -[ 70%] Generating moc_gamessextension.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_gamessextension.cxx_parameters -[ 71%] Generating moc_gamessinputdialog.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_gamessinputdialog.cxx_parameters -[ 71%] Generating moc_gamesshighlighter.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_gamesshighlighter.cxx_parameters -[ 71%] Generating moc_gamessefpmatchdialog.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_gamessefpmatchdialog.cxx_parameters -[ 71%] Generating ui_gamessinputdialog.h -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/ui_gamessinputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.ui -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/DependInfo.cmake --color= -Scanning dependencies of target gamessextension -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 71%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/inputdialog.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/inputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.cpp -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.cpp:25: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 71%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimwavefunction.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimwavefunction.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunction.cpp -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qalgorithms.h:45, - from /usr/include/qt4/QtCore/qdebug.h:45, - from /usr/include/qt4/QtCore/QDebug:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunction.cpp:25: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 71%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/avotubegen.cpp -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/QObject:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/avotubegen.h:21, - from /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/avotubegen.cpp:18: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 71%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessextension.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/gamessextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessextension.cpp -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessextension.h:26, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessextension.cpp:23: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 71%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.cpp -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/cmath:41, - from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.cpp:25: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 71%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderextension.cxx -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/../../../../../libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.h:21, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderextension.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 71%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderwidget.cxx +[ 70%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceparametereditor.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceparametereditor.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/moc_ceparametereditor.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9604,106 +9653,65 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/dockwidget.h:21, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/../../../../../libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.h:21, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderwidget.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 71%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder -I/build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/moc_avotubegen.cxx -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/QObject:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/../../../../../libavogadro/src/extensions/swcntbuilder/avotubegen.h:21, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/moc_avotubegen.cxx:9: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceparametereditor.h:21, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/moc_ceparametereditor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 71%] Linking CXX shared module ../../../../lib/swcntbuilderextension.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder && /usr/bin/cmake -E cmake_link_script CMakeFiles/swcntbuilderextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/swcntbuilderextension.so CMakeFiles/swcntbuilderextension.dir/__/insertcommand.cpp.o CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU tubegen/libtubegen.a make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 71%] Built target swcntbuilderextension +[ 70%] Built target spectraextension make -f libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 71%] Generating ui_lammpsinputdialog.h +[ 70%] Generating ui_lammpsinputdialog.h cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/ui_lammpsinputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/lammpsinputdialog.ui -[ 71%] Generating moc_inputfileextension.cxx +[ 70%] Generating moc_inputfileextension.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_inputfileextension.cxx_parameters -[ 72%] Generating moc_abinitinputdialog.cxx +[ 71%] Generating moc_abinitinputdialog.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_abinitinputdialog.cxx_parameters -[ 72%] Generating moc_daltoninputdialog.cxx +[ 71%] Generating moc_daltoninputdialog.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_daltoninputdialog.cxx_parameters -[ 72%] Generating moc_gamessukinputdialog.cxx +[ 71%] Generating moc_gamessukinputdialog.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_gamessukinputdialog.cxx_parameters -[ 72%] Generating moc_gaussianinputdialog.cxx +[ 71%] Generating moc_gaussianinputdialog.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_gaussianinputdialog.cxx_parameters -[ 72%] Generating moc_molproinputdialog.cxx +[ 71%] Generating moc_molproinputdialog.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_molproinputdialog.cxx_parameters -[ 72%] Generating moc_mopacinputdialog.cxx +[ 71%] Generating moc_mopacinputdialog.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_mopacinputdialog.cxx_parameters -[ 72%] Generating moc_nwcheminputdialog.cxx +[ 71%] Generating moc_nwcheminputdialog.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_nwcheminputdialog.cxx_parameters -[ 72%] Generating moc_psi4inputdialog.cxx +[ 71%] Generating moc_psi4inputdialog.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_psi4inputdialog.cxx_parameters -[ 72%] Generating moc_qcheminputdialog.cxx +[ 71%] Generating moc_qcheminputdialog.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_qcheminputdialog.cxx_parameters -[ 72%] Generating moc_teracheminputdialog.cxx +[ 71%] Generating moc_teracheminputdialog.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_teracheminputdialog.cxx_parameters -[ 73%] Generating moc_lammpsinputdialog.cxx +[ 72%] Generating moc_lammpsinputdialog.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_lammpsinputdialog.cxx_parameters -[ 73%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.cpp -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.cpp:23: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 73%] Generating ui_abinitinputdialog.h +[ 72%] Generating ui_abinitinputdialog.h cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/ui_abinitinputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/abinitinputdialog.ui -[ 73%] Generating ui_gaussianinputdialog.h +[ 72%] Generating ui_gaussianinputdialog.h cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/ui_gaussianinputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gaussianinputdialog.ui -[ 73%] Generating ui_daltoninputdialog.h +[ 72%] Generating ui_daltoninputdialog.h cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/ui_daltoninputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/daltoninputdialog.ui -[ 73%] Generating ui_gamessukinputdialog.h +[ 72%] Generating ui_gamessukinputdialog.h cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/ui_gamessukinputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessukinputdialog.ui -[ 73%] Generating ui_molproinputdialog.h +[ 72%] Generating ui_molproinputdialog.h cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/ui_molproinputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/molproinputdialog.ui -[ 73%] Generating ui_mopacinputdialog.h +[ 72%] Generating ui_mopacinputdialog.h cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/ui_mopacinputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/mopacinputdialog.ui -[ 73%] Generating ui_nwcheminputdialog.h +[ 72%] Generating ui_nwcheminputdialog.h cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/ui_nwcheminputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/nwcheminputdialog.ui -[ 73%] Generating ui_psi4inputdialog.h +[ 72%] Generating ui_psi4inputdialog.h cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/ui_psi4inputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/psi4inputdialog.ui -[ 74%] Generating ui_qcheminputdialog.h +[ 73%] Generating ui_qcheminputdialog.h cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/ui_qcheminputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/qcheminputdialog.ui -[ 74%] Generating ui_teracheminputdialog.h +[ 73%] Generating ui_teracheminputdialog.h cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/ui_teracheminputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/teracheminputdialog.ui cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/DependInfo.cmake --color= -Scanning dependencies of target inputfileextension -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 74%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/inputfileextension.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/inputfileextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputfileextension.cpp +[ 73%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceslabbuilder.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceslabbuilder.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/moc_ceslabbuilder.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9711,48 +9719,33 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputfileextension.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputfileextension.cpp:25: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 74%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimodeintegrator.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimodeintegrator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimodeintegrator.cpp -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qalgorithms.h:45, - from /usr/include/qt4/QtCore/qdebug.h:45, - from /usr/include/qt4/QtCore/QDebug:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimodeintegrator.h:30, - from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimodeintegrator.cpp:29: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdockwidget.h:45, + from /usr/include/qt4/QtGui/QDockWidget:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/dockwidget.h:21, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/moc_ceslabbuilder.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 74%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimcriticalpointlocator.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimcriticalpointlocator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.cpp +[ 73%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qalgorithms.h:45, - from /usr/include/qt4/QtCore/qdebug.h:45, - from /usr/include/qt4/QtCore/QDebug:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.cpp:27: + from /usr/include/c++/8/iostream:38, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.h:26, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp:14: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 74%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/inputdialog.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/inputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.cpp +Scanning dependencies of target inputfileextension +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 73%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/inputfileextension.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/inputfileextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputfileextension.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9764,15 +9757,14 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.cpp:25: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputfileextension.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputfileextension.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 74%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/abinitinputdialog.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/abinitinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/abinitinputdialog.cpp +[ 73%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_cetranslatewidget.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_cetranslatewidget.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/moc_cetranslatewidget.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9780,35 +9772,34 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qiodevice.h:46, - from /usr/include/qt4/QtCore/qprocess.h:45, - from /usr/include/qt4/QtCore/QProcess:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/abinitinputdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/abinitinputdialog.cpp:26: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 74%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/iostream:38, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.h:26, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp:14: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdockwidget.h:45, + from /usr/include/qt4/QtGui/QDockWidget:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/dockwidget.h:21, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/cetranslatewidget.h:23, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/moc_cetranslatewidget.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 74%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimmathutilities.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimmathutilities.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp +[ 74%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography -I/build/avogadro-1.2.0/libavogadro/src/extensions/crystallography -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/moc_ceviewoptionswidget.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/QtGlobal:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp:27: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdockwidget.h:45, + from /usr/include/qt4/QtGui/QDockWidget:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/dockwidget.h:21, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.h:21, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/ui/moc_ceviewoptionswidget.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ @@ -9847,48 +9838,11 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 75%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/daltoninputdialog.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/daltoninputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/daltoninputdialog.cpp -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/daltoninputdialog.h:13, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/daltoninputdialog.cpp:10: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 75%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.cpp -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.h:27, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.cpp:25: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 75%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/gamessukinputdialog.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/gamessukinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessukinputdialog.cpp +[ 75%] Linking CXX shared module ../../../../lib/crystallographyextension.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography && /usr/bin/cmake -E cmake_link_script CMakeFiles/crystallographyextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/crystallographyextension.so CMakeFiles/crystallographyextension.dir/avospglib.cpp.o CMakeFiles/crystallographyextension.dir/ceundo.cpp.o CMakeFiles/crystallographyextension.dir/crystallographyextension.cpp.o CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/cematrixeditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceviewoptionswidget.cpp.o CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cematrixeditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceparametereditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceslabbuilder.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cetranslatewidget.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -lsymspg +[ 75%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/inputdialog.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/inputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -9903,68 +9857,12 @@ from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/molecule.h:29, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessukinputdialog.h:30, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessukinputdialog.cpp:27: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 75%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_inputdialog.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_inputdialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 75%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_gamessextension.cxx -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessextension.h:26, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_gamessextension.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 75%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gaussianinputdialog.cpp -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qiodevice.h:46, - from /usr/include/qt4/QtCore/qprocess.h:45, - from /usr/include/qt4/QtCore/QProcess:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gaussianinputdialog.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gaussianinputdialog.cpp:26: + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 75%] Built target crystallographyextension [ 76%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimlsodaintegrator.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimlsodaintegrator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimlsodaintegrator.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, @@ -9980,40 +9878,40 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 76%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_gamessinputdialog.cxx +[ 76%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimcubature.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimcubature.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcubature.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_gamessinputdialog.cxx:9: + from /usr/include/qt4/QtCore/qalgorithms.h:45, + from /usr/include/qt4/QtCore/qdebug.h:45, + from /usr/include/qt4/QtCore/QDebug:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcubature.cpp:39: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 76%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_gamesshighlighter.cxx +[ 76%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/abinitinputdialog.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/abinitinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/abinitinputdialog.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45, - from /usr/include/qt4/QtGui/QSyntaxHighlighter:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamesshighlighter.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_gamesshighlighter.cxx:9: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qiodevice.h:46, + from /usr/include/qt4/QtCore/qprocess.h:45, + from /usr/include/qt4/QtCore/QProcess:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/abinitinputdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/abinitinputdialog.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 76%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_gamessefpmatchdialog.cxx +[ 76%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10026,27 +9924,33 @@ from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.h:27, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_gamessefpmatchdialog.cxx:9: + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.h:27, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 76%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimcubature.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimcubature.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcubature.cpp +[ 76%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/moc_qtaimextension.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/moc_qtaimextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim/moc_qtaimextension.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qalgorithms.h:45, - from /usr/include/qt4/QtCore/qdebug.h:45, - from /usr/include/qt4/QtCore/QDebug:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcubature.cpp:39: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/plugin.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/extension.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim/../../../../../libavogadro/src/extensions/qtaim/qtaimextension.h:25, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim/moc_qtaimextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 77%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/molproinputdialog.cpp +[ 76%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_inputdialog.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_inputdialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10060,30 +9964,24 @@ from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/molproinputdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/molproinputdialog.cpp:26: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 77%] Linking CXX shared module ../../../../lib/gamessextension.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/cmake -E cmake_link_script CMakeFiles/gamessextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/gamessextension.so CMakeFiles/gamessextension.dir/inputdialog.cpp.o CMakeFiles/gamessextension.dir/gamessextension.cpp.o CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o CMakeFiles/gamessextension.dir/gamesshighlighter.cpp.o CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o CMakeFiles/gamessextension.dir/moc_inputdialog.cxx.o CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 77%] Built target gamessextension make -f libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build.make libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 77%] Generating ui_orcaspectra.h +[ 76%] Generating ui_orcaspectra.h cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca/ui_orcaspectra.h /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaspectra.ui -[ 77%] Generating moc_orcaextension.cxx +[ 76%] Generating moc_orcaextension.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca/moc_orcaextension.cxx_parameters -[ 77%] Generating moc_orcainputdialog.cxx +[ 76%] Generating moc_orcainputdialog.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca/moc_orcainputdialog.cxx_parameters -[ 77%] Generating moc_orcaanalysedialog.cxx +[ 76%] Generating moc_orcaanalysedialog.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca/moc_orcaanalysedialog.cxx_parameters -[ 78%] Generating moc_orcaspectra.cxx +[ 77%] Generating moc_orcaspectra.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca/moc_orcaspectra.cxx_parameters -[ 78%] Generating ui_orcainputdialog.h +[ 77%] Generating ui_orcainputdialog.h cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca/ui_orcainputdialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget1'. /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget2'. @@ -10096,16 +9994,38 @@ /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget9'. /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget10'. /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget11'. -[ 78%] Generating ui_orcaanalysedialog.h +[ 77%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_gamessextension.cxx +[ 77%] Generating ui_orcaanalysedialog.h cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca/ui_orcaanalysedialog.h /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.ui /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget1'. cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/orca /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/DependInfo.cmake --color= +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessextension.h:26, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_gamessextension.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ Scanning dependencies of target orcaextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build.make libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 78%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcaextension.cpp.o +[ 77%] Linking CXX shared module ../../../../lib/qtaimextension.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim && /usr/bin/cmake -E cmake_link_script CMakeFiles/qtaimextension.dir/link.txt --verbose=1 +[ 77%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcaextension.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/orcaextension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaextension.cpp +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/qtaimextension.so CMakeFiles/qtaimextension.dir/qtaimextension.cpp.o CMakeFiles/qtaimextension.dir/qtaimwavefunction.cpp.o CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o CMakeFiles/qtaimextension.dir/qtaimodeintegrator.cpp.o CMakeFiles/qtaimextension.dir/qtaimcriticalpointlocator.cpp.o CMakeFiles/qtaimextension.dir/qtaimmathutilities.cpp.o CMakeFiles/qtaimextension.dir/qtaimlsodaintegrator.cpp.o CMakeFiles/qtaimextension.dir/qtaimcubature.cpp.o CMakeFiles/qtaimextension.dir/moc_qtaimextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10122,8 +10042,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 78%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/mopacinputdialog.cpp +[ 77%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/daltoninputdialog.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/daltoninputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/daltoninputdialog.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10138,13 +10058,24 @@ from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/molecule.h:29, from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/mopacinputdialog.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/mopacinputdialog.cpp:26: + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/daltoninputdialog.h:13, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/daltoninputdialog.cpp:10: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 78%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/moc_qtaimextension.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/moc_qtaimextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim/moc_qtaimextension.cxx +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 77%] Built target qtaimextension +make -f libavogadro/src/colors/CMakeFiles/smartscolor.dir/build.make libavogadro/src/colors/CMakeFiles/smartscolor.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 77%] Generating moc_smartscolor.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/moc_smartscolor.cxx_parameters +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/CMakeFiles/smartscolor.dir/DependInfo.cmake --color= +Scanning dependencies of target smartscolor +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/colors/CMakeFiles/smartscolor.dir/build.make libavogadro/src/colors/CMakeFiles/smartscolor.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 77%] Building CXX object libavogadro/src/colors/CMakeFiles/smartscolor.dir/smartscolor.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsmartscolor_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/smartscolor.dir/smartscolor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/colors/smartscolor.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10156,15 +10087,13 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/plugin.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/extension.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim/../../../../../libavogadro/src/extensions/qtaim/qtaimextension.h:25, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim/moc_qtaimextension.cxx:9: + from /build/avogadro-1.2.0/libavogadro/src/colors/smartscolor.h:28, + from /build/avogadro-1.2.0/libavogadro/src/colors/smartscolor.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 78%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcainputdialog.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/orcainputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.cpp +[ 77%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_gamessinputdialog.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10176,45 +10105,13 @@ from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.cpp:25: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 78%] Linking CXX shared module ../../../../lib/qtaimextension.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim && /usr/bin/cmake -E cmake_link_script CMakeFiles/qtaimextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/qtaimextension.so CMakeFiles/qtaimextension.dir/qtaimextension.cpp.o CMakeFiles/qtaimextension.dir/qtaimwavefunction.cpp.o CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o CMakeFiles/qtaimextension.dir/qtaimodeintegrator.cpp.o CMakeFiles/qtaimextension.dir/qtaimcriticalpointlocator.cpp.o CMakeFiles/qtaimextension.dir/qtaimmathutilities.cpp.o CMakeFiles/qtaimextension.dir/qtaimlsodaintegrator.cpp.o CMakeFiles/qtaimextension.dir/qtaimcubature.cpp.o CMakeFiles/qtaimextension.dir/moc_qtaimextension.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 78%] Built target qtaimextension -make -f libavogadro/src/colors/CMakeFiles/smartscolor.dir/build.make libavogadro/src/colors/CMakeFiles/smartscolor.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 78%] Generating moc_smartscolor.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/moc_smartscolor.cxx_parameters -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/CMakeFiles/smartscolor.dir/DependInfo.cmake --color= -Scanning dependencies of target smartscolor -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/colors/CMakeFiles/smartscolor.dir/build.make libavogadro/src/colors/CMakeFiles/smartscolor.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 78%] Building CXX object libavogadro/src/colors/CMakeFiles/smartscolor.dir/smartscolor.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsmartscolor_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/smartscolor.dir/smartscolor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/colors/smartscolor.cpp -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/colors/smartscolor.h:28, - from /build/avogadro-1.2.0/libavogadro/src/colors/smartscolor.cpp:25: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_gamessinputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 78%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/nwcheminputdialog.cpp +[ 77%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcainputdialog.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/orcainputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10222,19 +10119,16 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/nwcheminputdialog.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/nwcheminputdialog.cpp:26: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 78%] Building CXX object libavogadro/src/colors/CMakeFiles/smartscolor.dir/moc_smartscolor.cxx.o +[ 77%] Building CXX object libavogadro/src/colors/CMakeFiles/smartscolor.dir/moc_smartscolor.cxx.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsmartscolor_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/smartscolor.dir/moc_smartscolor.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/moc_smartscolor.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -10252,21 +10146,21 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 78%] Linking CXX shared module ../../../lib/smartscolor.so +[ 77%] Linking CXX shared module ../../../lib/smartscolor.so cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/smartscolor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/smartscolor.so CMakeFiles/smartscolor.dir/smartscolor.cpp.o CMakeFiles/smartscolor.dir/moc_smartscolor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 78%] Built target smartscolor +[ 77%] Built target smartscolor make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 78%] Generating moc_customcolor.cxx +[ 77%] Generating moc_customcolor.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/moc_customcolor.cxx_parameters cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/CMakeFiles/customcolor.dir/DependInfo.cmake --color= Scanning dependencies of target customcolor make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 78%] Building CXX object libavogadro/src/colors/CMakeFiles/customcolor.dir/customcolor.cpp.o +[ 77%] Building CXX object libavogadro/src/colors/CMakeFiles/customcolor.dir/customcolor.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcustomcolor_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/customcolor.dir/customcolor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/colors/customcolor.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -10284,8 +10178,22 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 78%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/psi4inputdialog.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/psi4inputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/psi4inputdialog.cpp +[ 77%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_gamesshighlighter.cxx +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45, + from /usr/include/qt4/QtGui/QSyntaxHighlighter:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamesshighlighter.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_gamesshighlighter.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 77%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/gamessukinputdialog.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/gamessukinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessukinputdialog.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10297,14 +10205,16 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/psi4inputdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/psi4inputdialog.cpp:25: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessukinputdialog.h:30, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessukinputdialog.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 78%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcaanalysedialog.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/orcaanalysedialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.cpp +[ 77%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_gamessefpmatchdialog.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10312,16 +10222,17 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.cpp:29: + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.h:27, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_gamessefpmatchdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 78%] Building CXX object libavogadro/src/colors/CMakeFiles/customcolor.dir/moc_customcolor.cxx.o +[ 77%] Building CXX object libavogadro/src/colors/CMakeFiles/customcolor.dir/moc_customcolor.cxx.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcustomcolor_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/customcolor.dir/moc_customcolor.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/moc_customcolor.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -10339,21 +10250,21 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 78%] Linking CXX shared module ../../../lib/customcolor.so +[ 77%] Linking CXX shared module ../../../lib/customcolor.so cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/customcolor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/customcolor.so CMakeFiles/customcolor.dir/customcolor.cpp.o CMakeFiles/customcolor.dir/moc_customcolor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 78%] Built target customcolor +[ 77%] Built target customcolor make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 78%] Generating moc_distancecolor.cxx +[ 77%] Generating moc_distancecolor.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/moc_distancecolor.cxx_parameters cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/CMakeFiles/distancecolor.dir/DependInfo.cmake --color= Scanning dependencies of target distancecolor make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 78%] Building CXX object libavogadro/src/colors/CMakeFiles/distancecolor.dir/distancecolor.cpp.o +[ 77%] Building CXX object libavogadro/src/colors/CMakeFiles/distancecolor.dir/distancecolor.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddistancecolor_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/distancecolor.dir/distancecolor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/colors/distancecolor.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -10371,62 +10282,23 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 78%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/qcheminputdialog.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/qcheminputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/qcheminputdialog.cpp -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/qcheminputdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/qcheminputdialog.cpp:25: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 78%] Building CXX object libavogadro/src/colors/CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddistancecolor_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/moc_distancecolor.cxx -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/../../../../libavogadro/src/colors/distancecolor.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/moc_distancecolor.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 78%] Linking CXX shared module ../../../lib/distancecolor.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/distancecolor.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/distancecolor.so CMakeFiles/distancecolor.dir/distancecolor.cpp.o CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 77%] Linking CXX shared module ../../../../lib/gamessextension.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/cmake -E cmake_link_script CMakeFiles/gamessextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/gamessextension.so CMakeFiles/gamessextension.dir/inputdialog.cpp.o CMakeFiles/gamessextension.dir/gamessextension.cpp.o CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o CMakeFiles/gamessextension.dir/gamesshighlighter.cpp.o CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o CMakeFiles/gamessextension.dir/moc_inputdialog.cxx.o CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 78%] Built target distancecolor +[ 77%] Built target gamessextension make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 78%] Generating ui_residuecolorsettings.h +[ 77%] Generating ui_residuecolorsettings.h cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/ui_residuecolorsettings.h /build/avogadro-1.2.0/libavogadro/src/colors/residuecolorsettings.ui -[ 78%] Generating moc_residuecolor.cxx +[ 77%] Generating moc_residuecolor.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/moc_residuecolor.cxx_parameters cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/CMakeFiles/residuecolor.dir/DependInfo.cmake --color= Scanning dependencies of target residuecolor make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 78%] Building CXX object libavogadro/src/colors/CMakeFiles/residuecolor.dir/residuecolor.cpp.o +[ 77%] Building CXX object libavogadro/src/colors/CMakeFiles/residuecolor.dir/residuecolor.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dresiduecolor_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/residuecolor.dir/residuecolor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/colors/residuecolor.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -10444,29 +10316,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -In file included from /usr/include/c++/8/vector:69, - from /usr/include/qt4/QtCore/qvector.h:52, - from /usr/include/qt4/QtGui/qbrush.h:47, - from /usr/include/qt4/QtGui/qpalette.h:47, - from /usr/include/qt4/QtGui/qwidget.h:50, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.cpp:29: -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Eigen::Matrix&}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]': -/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 - vector<_Tp, _Alloc>:: - ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::vector3&}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]': -/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 -/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - _M_realloc_insert(end(), std::forward<_Args>(__args)...); - ^~~~~~~~~~~~~~~~~ -[ 78%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/teracheminputdialog.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/teracheminputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/teracheminputdialog.cpp +[ 77%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gaussianinputdialog.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10475,47 +10326,16 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/teracheminputdialog.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/teracheminputdialog.cpp:26: + from /usr/include/qt4/QtCore/qiodevice.h:46, + from /usr/include/qt4/QtCore/qprocess.h:45, + from /usr/include/qt4/QtCore/QProcess:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gaussianinputdialog.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gaussianinputdialog.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -In file included from /usr/include/c++/8/vector:64, - from /usr/include/qt4/QtCore/qvector.h:52, - from /usr/include/qt4/QtGui/qbrush.h:47, - from /usr/include/qt4/QtGui/qpalette.h:47, - from /usr/include/qt4/QtGui/qwidget.h:50, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.cpp:29: -/usr/include/c++/8/bits/stl_vector.h: In member function 'QString Avogadro::OrcaAnalyseDialog::readOutputFile()': -/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - _M_realloc_insert(end(), __x); - ^~~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - _M_realloc_insert(end(), __x); - ^~~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - _M_realloc_insert(end(), __x); - ^~~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - _M_realloc_insert(end(), __x); - ^~~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - _M_realloc_insert(end(), __x); - ^~~~~~~~~~~~~~~~~ -/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - _M_realloc_insert(end(), __x); - ^~~~~~~~~~~~~~~~~ -[ 79%] Building CXX object libavogadro/src/colors/CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dresiduecolor_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/moc_residuecolor.cxx +[ 77%] Building CXX object libavogadro/src/colors/CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddistancecolor_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/moc_distancecolor.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10527,27 +10347,20 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/../../../../libavogadro/src/colors/residuecolor.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/moc_residuecolor.cxx:9: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/../../../../libavogadro/src/colors/distancecolor.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/moc_distancecolor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 79%] Linking CXX shared module ../../../lib/residuecolor.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/residuecolor.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/residuecolor.so CMakeFiles/residuecolor.dir/residuecolor.cpp.o CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 77%] Linking CXX shared module ../../../lib/distancecolor.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/distancecolor.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/distancecolor.so CMakeFiles/distancecolor.dir/distancecolor.cpp.o CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 77%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcaanalysedialog.cpp.o make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 79%] Built target residuecolor +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/orcaanalysedialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.cpp +[ 77%] Built target distancecolor make -f libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build.make libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 79%] Generating moc_atomindexcolor.cxx -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/moc_atomindexcolor.cxx_parameters -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/DependInfo.cmake --color= -Scanning dependencies of target atomindexcolor -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build.make libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 79%] Building CXX object libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Datomindexcolor_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/colors/atomindexcolor.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10555,17 +10368,24 @@ from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/libavogadro/src/colors/atomindexcolor.h:28, - from /build/avogadro-1.2.0/libavogadro/src/colors/atomindexcolor.cpp:25: + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.cpp:29: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 79%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/lammpsinputdialog.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/lammpsinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/lammpsinputdialog.cpp +[ 77%] Generating moc_atomindexcolor.cxx +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/moc_atomindexcolor.cxx_parameters +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/DependInfo.cmake --color= +Scanning dependencies of target atomindexcolor +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build.make libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 77%] Building CXX object libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Datomindexcolor_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/colors/atomindexcolor.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10577,32 +10397,13 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/lammpsinputdialog.h:28, - from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/lammpsinputdialog.cpp:25: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 79%] Building CXX object libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Datomindexcolor_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/moc_atomindexcolor.cxx -[ 79%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcaspectra.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/orcaspectra.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaspectra.cpp -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qatomic.h:45, - from /usr/include/qt4/QtCore/qvariant.h:45, - from /usr/include/qt4/QtCore/QVariant:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca/ui_orcaspectra.h:12, - from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaspectra.h:26, - from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaspectra.cpp:24: + from /build/avogadro-1.2.0/libavogadro/src/colors/atomindexcolor.h:28, + from /build/avogadro-1.2.0/libavogadro/src/colors/atomindexcolor.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 78%] Building CXX object libavogadro/src/colors/CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dresiduecolor_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/moc_residuecolor.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10614,26 +10415,26 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/../../../../libavogadro/src/colors/atomindexcolor.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/moc_atomindexcolor.cxx:9: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/../../../../libavogadro/src/colors/residuecolor.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/moc_residuecolor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 79%] Linking CXX shared module ../../../lib/atomindexcolor.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/atomindexcolor.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/atomindexcolor.so CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 78%] Linking CXX shared module ../../../lib/residuecolor.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/residuecolor.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/residuecolor.so CMakeFiles/residuecolor.dir/residuecolor.cpp.o CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 79%] Built target atomindexcolor +[ 78%] Built target residuecolor make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 79%] Generating moc_chargecolor.cxx +[ 78%] Generating moc_chargecolor.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/moc_chargecolor.cxx_parameters cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/CMakeFiles/chargecolor.dir/DependInfo.cmake --color= Scanning dependencies of target chargecolor make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 80%] Building CXX object libavogadro/src/colors/CMakeFiles/chargecolor.dir/chargecolor.cpp.o +[ 79%] Building CXX object libavogadro/src/colors/CMakeFiles/chargecolor.dir/chargecolor.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dchargecolor_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/chargecolor.dir/chargecolor.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/colors/chargecolor.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -10651,27 +10452,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 80%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_inputfileextension.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_inputfileextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_inputfileextension.cxx -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputfileextension.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_inputfileextension.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 80%] Building CXX object libavogadro/src/colors/CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dchargecolor_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/moc_chargecolor.cxx +[ 79%] Building CXX object libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Datomindexcolor_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/moc_atomindexcolor.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10683,40 +10465,19 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/../../../../libavogadro/src/colors/chargecolor.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/moc_chargecolor.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 80%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcadata.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/orcadata.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcadata.cpp -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcadata.cpp:25: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/../../../../libavogadro/src/colors/atomindexcolor.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/moc_atomindexcolor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 80%] Linking CXX shared module ../../../lib/chargecolor.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/chargecolor.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/chargecolor.so CMakeFiles/chargecolor.dir/chargecolor.cpp.o CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU +[ 79%] Linking CXX shared module ../../../lib/atomindexcolor.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/atomindexcolor.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/atomindexcolor.so CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 80%] Built target chargecolor +[ 80%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/molproinputdialog.cpp +[ 80%] Built target atomindexcolor make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 80%] Generating moleculelist.moc -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python/moleculelist.moc_parameters -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/python /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python/CMakeFiles/python-module.dir/DependInfo.cmake --color= -[ 80%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_inputdialog.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_inputdialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10730,237 +10491,22 @@ from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx:9: + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/molproinputdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/molproinputdialog.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 80%] Generating moleculelist.moc +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python/moleculelist.moc_parameters +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/python /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python/CMakeFiles/python-module.dir/DependInfo.cmake --color= Scanning dependencies of target python-module make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 81%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/animation.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/animation.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/animation.cpp -In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33, - from /usr/include/limits.h:26, - from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/limits.h:194, - from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/syslimits.h:7, - from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/limits.h:34, - from /usr/include/boost/python/detail/wrap_python.hpp:61, - from /build/avogadro-1.2.0/libavogadro/src/python/animation.cpp:2: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 81%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_abinitinputdialog.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_abinitinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_abinitinputdialog.cxx -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qiodevice.h:46, - from /usr/include/qt4/QtCore/qprocess.h:45, - from /usr/include/qt4/QtCore/QProcess:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/abinitinputdialog.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_abinitinputdialog.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 81%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcaextension.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/moc_orcaextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca/moc_orcaextension.cxx -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcaextension.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca/moc_orcaextension.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 82%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_daltoninputdialog.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_daltoninputdialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_daltoninputdialog.cxx -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/daltoninputdialog.h:13, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_daltoninputdialog.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 83%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcainputdialog.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/moc_orcainputdialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca/moc_orcainputdialog.cxx -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcainputdialog.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca/moc_orcainputdialog.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 83%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_gamessukinputdialog.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_gamessukinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_gamessukinputdialog.cxx -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessukinputdialog.h:30, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_gamessukinputdialog.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 83%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcaanalysedialog.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/moc_orcaanalysedialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca/moc_orcaanalysedialog.cxx -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtGui/qwindowdefs.h:45, - from /usr/include/qt4/QtGui/qwidget.h:46, - from /usr/include/qt4/QtGui/qdialog.h:45, - from /usr/include/qt4/QtGui/QDialog:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcaanalysedialog.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca/moc_orcaanalysedialog.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 83%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/atom.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/atom.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/atom.cpp -In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33, - from /usr/include/limits.h:26, - from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/limits.h:194, - from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/syslimits.h:7, - from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/limits.h:34, - from /usr/include/boost/python/detail/wrap_python.hpp:61, - from /usr/include/boost/python/detail/prefix.hpp:13, - from /usr/include/boost/python/args.hpp:8, - from /usr/include/boost/python.hpp:11, - from /build/avogadro-1.2.0/libavogadro/src/python/atom.cpp:2: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 83%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_gaussianinputdialog.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_gaussianinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_gaussianinputdialog.cxx -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qiodevice.h:46, - from /usr/include/qt4/QtCore/qprocess.h:45, - from /usr/include/qt4/QtCore/QProcess:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gaussianinputdialog.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_gaussianinputdialog.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 83%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcaspectra.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/moc_orcaspectra.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca/moc_orcaspectra.cxx -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qatomic.h:45, - from /usr/include/qt4/QtCore/qvariant.h:45, - from /usr/include/qt4/QtCore/QVariant:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca/ui_orcaspectra.h:12, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcaspectra.h:26, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca/moc_orcaspectra.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 83%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_molproinputdialog.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_molproinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_molproinputdialog.cxx -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/molproinputdialog.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_molproinputdialog.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 83%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_mopacinputdialog.cxx -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/mopacinputdialog.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_mopacinputdialog.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 83%] Linking CXX shared module ../../../../lib/orcaextension.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca && /usr/bin/cmake -E cmake_link_script CMakeFiles/orcaextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/orcaextension.so CMakeFiles/orcaextension.dir/orcaextension.cpp.o CMakeFiles/orcaextension.dir/orcainputdialog.cpp.o CMakeFiles/orcaextension.dir/orcaanalysedialog.cpp.o CMakeFiles/orcaextension.dir/orcaspectra.cpp.o CMakeFiles/orcaextension.dir/orcadata.cpp.o CMakeFiles/orcaextension.dir/moc_orcaextension.cxx.o CMakeFiles/orcaextension.dir/moc_orcainputdialog.cxx.o CMakeFiles/orcaextension.dir/moc_orcaanalysedialog.cxx.o CMakeFiles/orcaextension.dir/moc_orcaspectra.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -[ 83%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_nwcheminputdialog.cxx +[ 80%] Building CXX object libavogadro/src/colors/CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dchargecolor_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/moc_chargecolor.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -10972,84 +10518,144 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/nwcheminputdialog.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_nwcheminputdialog.cxx:9: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/../../../../libavogadro/src/colors/chargecolor.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/moc_chargecolor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 83%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/bond.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/bond.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/bond.cpp +[ 81%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/animation.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/animation.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/animation.cpp In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/limits.h:194, from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, - from /usr/include/boost/python/detail/prefix.hpp:13, - from /usr/include/boost/python/args.hpp:8, - from /usr/include/boost/python.hpp:11, - from /build/avogadro-1.2.0/libavogadro/src/python/bond.cpp:2: + from /build/avogadro-1.2.0/libavogadro/src/python/animation.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 81%] Linking CXX shared module ../../../lib/chargecolor.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/chargecolor.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/chargecolor.so CMakeFiles/chargecolor.dir/chargecolor.cpp.o CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 83%] Built target orcaextension +[ 81%] Built target chargecolor make -f avogadro/src/CMakeFiles/avogadro-app.dir/build.make avogadro/src/CMakeFiles/avogadro-app.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 83%] Generating avogadro_zh_TW.qm +[ 81%] Generating avogadro_zh_TW.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/zh_TW.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_zh_TW.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_zh_TW.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_zh_TW.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_zh_TW.qm -[ 83%] Generating aboutdialog.moc +In file included from /usr/include/c++/8/vector:69, + from /usr/include/qt4/QtCore/qvector.h:52, + from /usr/include/qt4/QtGui/qbrush.h:47, + from /usr/include/qt4/QtGui/qpalette.h:47, + from /usr/include/qt4/QtGui/qwidget.h:50, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.cpp:29: +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Eigen::Matrix&}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]': +/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 + vector<_Tp, _Alloc>:: + ^~~~~~~~~~~~~~~~~~~ +[ 81%] Generating aboutdialog.moc cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/aboutdialog.moc_parameters -[ 83%] Generating addenginedialog.moc +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::vector3&}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]': +/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 +[ 81%] Generating addenginedialog.moc cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/addenginedialog.moc_parameters -[ 83%] Generating application.moc +[ 81%] Generating application.moc cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/application.moc_parameters -[ 83%] Generating detachedview.moc +[ 81%] Generating detachedview.moc cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/detachedview.moc_parameters -[ 83%] Generating enginecolorswidget.moc +[ 81%] Generating enginecolorswidget.moc cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/enginecolorswidget.moc_parameters -[ 83%] Generating engineitemdelegate.moc +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 +/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + _M_realloc_insert(end(), std::forward<_Args>(__args)...); + ^~~~~~~~~~~~~~~~~ +[ 81%] Generating engineitemdelegate.moc cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/engineitemdelegate.moc_parameters -[ 83%] Generating engineitemmodel.moc +[ 81%] Generating engineitemmodel.moc cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/engineitemmodel.moc_parameters -[ 84%] Generating enginelistview.moc +[ 82%] Generating enginelistview.moc cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/enginelistview.moc_parameters -[ 84%] Generating engineprimitiveswidget.moc +[ 82%] Generating engineprimitiveswidget.moc cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/engineprimitiveswidget.moc_parameters -[ 84%] Generating engineviewwidget.moc +[ 82%] Generating engineviewwidget.moc cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/engineviewwidget.moc_parameters -[ 84%] Generating flattabwidget.moc +[ 82%] Generating flattabwidget.moc cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/flattabwidget.moc_parameters -[ 84%] Generating glgraphicsview.moc +[ 82%] Generating glgraphicsview.moc cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/glgraphicsview.moc_parameters -[ 84%] Generating importdialog.moc +[ 82%] Generating importdialog.moc cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/importdialog.moc_parameters -[ 84%] Generating mainwindow.moc +[ 82%] Generating mainwindow.moc cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/mainwindow.moc_parameters -[ 84%] Generating pluginitemmodel.moc +[ 82%] Generating pluginitemmodel.moc cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/pluginitemmodel.moc_parameters -[ 84%] Generating pluginlistview.moc +[ 82%] Generating pluginlistview.moc cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/pluginlistview.moc_parameters -[ 85%] Generating pluginsettings.moc +[ 83%] Generating pluginsettings.moc cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/pluginsettings.moc_parameters -[ 85%] Generating primitiveitemmodel.moc +[ 83%] Generating primitiveitemmodel.moc cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/primitiveitemmodel.moc_parameters -[ 85%] Generating primitivetreeview.moc +[ 83%] Generating primitivetreeview.moc cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/primitivetreeview.moc_parameters -[ 85%] Generating projecttreeeditor.moc +[ 83%] Generating projecttreeeditor.moc cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/projecttreeeditor.moc_parameters -[ 85%] Generating projecttreemodel.moc +[ 83%] Generating projecttreemodel.moc cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/projecttreemodel.moc_parameters -[ 85%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_psi4inputdialog.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_psi4inputdialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_psi4inputdialog.cxx -[ 85%] Generating projecttreemodeldelegate.moc +In file included from /usr/include/c++/8/vector:64, + from /usr/include/qt4/QtCore/qvector.h:52, + from /usr/include/qt4/QtGui/qbrush.h:47, + from /usr/include/qt4/QtGui/qpalette.h:47, + from /usr/include/qt4/QtGui/qwidget.h:50, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.cpp:29: +/usr/include/c++/8/bits/stl_vector.h: In member function 'QString Avogadro::OrcaAnalyseDialog::readOutputFile()': +/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + _M_realloc_insert(end(), __x); + ^~~~~~~~~~~~~~~~~ +/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + _M_realloc_insert(end(), __x); + ^~~~~~~~~~~~~~~~~ +/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + _M_realloc_insert(end(), __x); + ^~~~~~~~~~~~~~~~~ +/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + _M_realloc_insert(end(), __x); + ^~~~~~~~~~~~~~~~~ +/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + _M_realloc_insert(end(), __x); + ^~~~~~~~~~~~~~~~~ +/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + _M_realloc_insert(end(), __x); + ^~~~~~~~~~~~~~~~~ +[ 83%] Generating projecttreemodeldelegate.moc cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/projecttreemodeldelegate.moc_parameters +[ 83%] Generating savedialog.moc +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/savedialog.moc_parameters +[ 83%] Generating settingsdialog.moc +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/settingsdialog.moc_parameters +[ 83%] Generating atomdelegate.moc +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/atomdelegate.moc_parameters +[ 84%] Generating bonddelegate.moc +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/bonddelegate.moc_parameters +[ 84%] Generating labeldelegate.moc +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/labeldelegate.moc_parameters +[ 84%] Generating moleculedelegate.moc +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/moleculedelegate.moc_parameters +[ 84%] Generating residuedelegate.moc +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/residuedelegate.moc_parameters +[ 84%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/mopacinputdialog.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -11061,365 +10667,327 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/glwidget.h:32, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/psi4inputdialog.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_psi4inputdialog.cxx:9: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/mopacinputdialog.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/mopacinputdialog.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 85%] Generating savedialog.moc -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/savedialog.moc_parameters -[ 85%] Generating settingsdialog.moc -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/settingsdialog.moc_parameters -[ 85%] Generating atomdelegate.moc -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/atomdelegate.moc_parameters -[ 86%] Generating bonddelegate.moc -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/bonddelegate.moc_parameters -[ 86%] Generating labeldelegate.moc -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/labeldelegate.moc_parameters -[ 86%] Generating moleculedelegate.moc -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/moleculedelegate.moc_parameters -[ 86%] Generating residuedelegate.moc -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/residuedelegate.moc_parameters -[ 86%] Generating selectiondelegate.moc +[ 84%] Generating selectiondelegate.moc cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/moc @/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/selectiondelegate.moc_parameters -[ 86%] Generating ui_addenginedialog.h +[ 84%] Generating ui_addenginedialog.h cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/ui_addenginedialog.h /build/avogadro-1.2.0/avogadro/src/addenginedialog.ui -[ 86%] Generating ui_enginecolorswidget.h +[ 84%] Generating ui_enginecolorswidget.h cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/ui_enginecolorswidget.h /build/avogadro-1.2.0/avogadro/src/enginecolorswidget.ui -[ 86%] Generating ui_engineprimitiveswidget.h +[ 84%] Generating ui_engineprimitiveswidget.h cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/ui_engineprimitiveswidget.h /build/avogadro-1.2.0/avogadro/src/engineprimitiveswidget.ui -[ 86%] Generating ui_importdialog.h +[ 84%] Generating ui_importdialog.h cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/ui_importdialog.h /build/avogadro-1.2.0/avogadro/src/importdialog.ui -[ 86%] Generating ui_mainwindow.h +[ 84%] Generating ui_mainwindow.h cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/ui_mainwindow.h /build/avogadro-1.2.0/avogadro/src/mainwindow.ui -[ 87%] Generating ui_pluginsettings.h +[ 85%] Generating ui_pluginsettings.h cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/ui_pluginsettings.h /build/avogadro-1.2.0/avogadro/src/pluginsettings.ui -[ 87%] Generating ui_projecttreeeditor.h +[ 85%] Generating ui_projecttreeeditor.h cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/ui_projecttreeeditor.h /build/avogadro-1.2.0/avogadro/src/projecttreeeditor.ui -[ 87%] Generating ui_settingsdialog.h +[ 85%] Generating ui_settingsdialog.h cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/uic -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/ui_settingsdialog.h /build/avogadro-1.2.0/avogadro/src/settingsdialog.ui -[ 87%] Generating qrc_avogadro.cxx +[ 85%] Generating qrc_avogadro.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/lib/arm-linux-gnueabihf/qt4/bin/rcc -name avogadro -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/qrc_avogadro.cxx /build/avogadro-1.2.0/avogadro/src/avogadro.qrc -[ 87%] Generating avogadro_af.qm +[ 85%] Generating avogadro_af.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/af.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_af.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_af.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_af.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_af.qm -[ 87%] Generating avogadro_ar.qm +[ 85%] Generating avogadro_ar.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ar.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_ar.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_ar.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_ar.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_ar.qm -[ 87%] Generating avogadro_bg.qm +[ 85%] Generating avogadro_bg.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/bg.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_bg.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_bg.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_bg.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_bg.qm -[ 87%] Generating avogadro_ca.qm +[ 85%] Generating avogadro_ca.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ca.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_ca.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_ca.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_ca.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_ca.qm -[ 87%] Generating avogadro_ca@valencia.qm +[ 85%] Generating avogadro_ca@valencia.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ca@valencia.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_ca@valencia.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_ca@valencia.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_ca@valencia.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_ca@valencia.qm -[ 88%] Generating avogadro_cs.qm +[ 86%] Generating avogadro_cs.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/cs.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_cs.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_cs.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_cs.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_cs.qm -[ 88%] Generating avogadro_da.qm +[ 86%] Generating avogadro_da.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/da.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_da.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_da.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_da.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_da.qm -[ 88%] Generating avogadro_de.qm +[ 86%] Generating avogadro_de.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/de.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_de.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_de.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_de.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_de.qm -[ 88%] Generating avogadro_el.qm +[ 86%] Generating avogadro_el.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/el.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_el.ts -[ 88%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_qcheminputdialog.cxx cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_el.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/qcheminputdialog.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_qcheminputdialog.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_el.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_el.qm -[ 88%] Generating avogadro_en_AU.qm +[ 86%] Generating avogadro_en_AU.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/en_AU.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_en_AU.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_en_AU.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_en_AU.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_en_AU.qm -[ 88%] Generating avogadro_en_CA.qm +[ 86%] Generating avogadro_en_CA.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/en_CA.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_en_CA.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_en_CA.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_en_CA.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_en_CA.qm -[ 88%] Generating avogadro_en_GB.qm +[ 86%] Generating avogadro_en_GB.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/en_GB.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_en_GB.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_en_GB.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_en_GB.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_en_GB.qm -[ 88%] Generating avogadro_es.qm +[ 86%] Generating avogadro_es.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/es.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_es.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_es.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_es.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_es.qm -[ 88%] Generating avogadro_et.qm +[ 86%] Generating avogadro_et.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/et.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_et.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_et.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_et.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_et.qm -[ 88%] Generating avogadro_eu.qm +[ 86%] Generating avogadro_eu.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/eu.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_eu.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_eu.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_eu.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_eu.qm -[ 89%] Generating avogadro_fi.qm +[ 87%] Generating avogadro_fi.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/fi.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_fi.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_fi.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_fi.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_fi.qm -[ 89%] Generating avogadro_fr.qm +[ 87%] Generating avogadro_fr.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/fr.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_fr.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_fr.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_fr.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_fr.qm -[ 89%] Generating avogadro_fr_CA.qm +[ 87%] Generating avogadro_fr_CA.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/fr_CA.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_fr_CA.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_fr_CA.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_fr_CA.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_fr_CA.qm -[ 89%] Generating avogadro_gl.qm +[ 87%] Generating avogadro_gl.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/gl.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_gl.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_gl.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_gl.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_gl.qm -[ 89%] Generating avogadro_he.qm +[ 87%] Generating avogadro_he.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/he.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_he.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_he.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_he.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_he.qm -[ 89%] Generating avogadro_hi.qm +[ 87%] Generating avogadro_hi.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/hi.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_hi.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_hi.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_hi.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_hi.qm -[ 89%] Generating avogadro_hr.qm +[ 87%] Generating avogadro_hr.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/hr.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_hr.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_hr.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_hr.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_hr.qm -[ 89%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_teracheminputdialog.cxx.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_teracheminputdialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_teracheminputdialog.cxx -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/teracheminputdialog.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_teracheminputdialog.cxx:9: +[ 87%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/atom.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/atom.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/atom.cpp +[ 87%] Generating avogadro_hu.qm +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/hu.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_hu.ts +In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33, + from /usr/include/limits.h:26, + from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/limits.h:194, + from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/syslimits.h:7, + from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/limits.h:34, + from /usr/include/boost/python/detail/wrap_python.hpp:61, + from /usr/include/boost/python/detail/prefix.hpp:13, + from /usr/include/boost/python/args.hpp:8, + from /usr/include/boost/python.hpp:11, + from /build/avogadro-1.2.0/libavogadro/src/python/atom.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 89%] Generating avogadro_hu.qm -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/hu.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_hu.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_hu.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_hu.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_hu.qm -[ 89%] Generating avogadro_id.qm +[ 87%] Generating avogadro_id.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/id.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_id.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_id.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +[ 87%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcaspectra.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/orcaspectra.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaspectra.cpp cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_id.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_id.qm -[ 90%] Generating avogadro_it.qm +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qatomic.h:45, + from /usr/include/qt4/QtCore/qvariant.h:45, + from /usr/include/qt4/QtCore/QVariant:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca/ui_orcaspectra.h:12, + from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaspectra.h:26, + from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaspectra.cpp:24: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 88%] Generating avogadro_it.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/it.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_it.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_it.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_it.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_it.qm -[ 90%] Generating avogadro_ja.qm +[ 88%] Generating avogadro_ja.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ja.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_ja.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_ja.ts +[ 88%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/nwcheminputdialog.cpp Scanning directory '/build/avogadro-1.2.0/avogadro/src'... +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/nwcheminputdialog.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/nwcheminputdialog.cpp:26: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_ja.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_ja.qm -[ 90%] Generating avogadro_kn.qm +[ 88%] Generating avogadro_kn.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/kn.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_kn.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_kn.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_kn.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_kn.qm -[ 90%] Generating avogadro_ko.qm +[ 88%] Generating avogadro_ko.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ko.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_ko.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_ko.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_ko.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_ko.qm -[ 90%] Generating avogadro_ms.qm +[ 88%] Generating avogadro_ms.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ms.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_ms.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_ms.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_ms.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_ms.qm -[ 90%] Generating avogadro_nb.qm +[ 88%] Generating avogadro_nb.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/nb.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_nb.ts -[ 90%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/camera.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/camera.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/camera.cpp cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_nb.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33, - from /usr/include/limits.h:26, - from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/limits.h:194, - from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/syslimits.h:7, - from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/limits.h:34, - from /usr/include/boost/python/detail/wrap_python.hpp:61, - from /usr/include/boost/python/detail/prefix.hpp:13, - from /usr/include/boost/python/args.hpp:8, - from /usr/include/boost/python.hpp:11, - from /build/avogadro-1.2.0/libavogadro/src/python/camera.cpp:2: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_nb.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_nb.qm -[ 90%] Generating avogadro_nl.qm +[ 88%] Generating avogadro_nl.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/nl.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_nl.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_nl.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_nl.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_nl.qm -[ 90%] Generating avogadro_oc.qm +[ 88%] Generating avogadro_oc.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/oc.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_oc.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_oc.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_oc.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_oc.qm -[ 90%] Generating avogadro_pl.qm +[ 88%] Generating avogadro_pl.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/pl.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_pl.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_pl.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_pl.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_pl.qm -[ 91%] Generating avogadro_pt.qm +[ 89%] Generating avogadro_pt.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/pt.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_pt.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_pt.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_pt.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_pt.qm -[ 91%] Generating avogadro_pt_BR.qm +[ 89%] Generating avogadro_pt_BR.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/pt_BR.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_pt_BR.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_pt_BR.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_pt_BR.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_pt_BR.qm -[ 91%] Generating avogadro_ru.qm +[ 89%] Generating avogadro_ru.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ru.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_ru.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_ru.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_ru.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_ru.qm -[ 91%] Generating avogadro_sk.qm +[ 89%] Generating avogadro_sk.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/sk.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_sk.ts -[ 92%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_lammpsinputdialog.cxx.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_sk.ts -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_lammpsinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_lammpsinputdialog.cxx Scanning directory '/build/avogadro-1.2.0/avogadro/src'... -In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, - from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, - from /usr/include/c++/8/utility:68, - from /usr/include/c++/8/algorithm:60, - from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qnamespace.h:45, - from /usr/include/qt4/QtCore/qobjectdefs.h:45, - from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/qtranslator.h:45, - from /usr/include/qt4/QtCore/QTranslator:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/molecule.h:29, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/lammpsinputdialog.h:28, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_lammpsinputdialog.cxx:9: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_sk.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_sk.qm -[ 92%] Generating avogadro_sl.qm +[ 89%] Generating avogadro_sl.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/sl.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_sl.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_sl.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_sl.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_sl.qm -[ 92%] Generating avogadro_sq.qm +[ 89%] Generating avogadro_sq.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/sq.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_sq.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_sq.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_sq.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_sq.qm -[ 92%] Generating avogadro_sr.qm +[ 89%] Generating avogadro_sr.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/sr.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_sr.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_sr.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_sr.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_sr.qm -[ 92%] Generating avogadro_sv.qm +[ 89%] Generating avogadro_sv.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/sv.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_sv.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_sv.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_sv.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_sv.qm -[ 92%] Generating avogadro_ta.qm +[ 89%] Generating avogadro_ta.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ta.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_ta.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_ta.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_ta.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_ta.qm -[ 92%] Generating avogadro_te.qm +[ 89%] Generating avogadro_te.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/te.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_te.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_te.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_te.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_te.qm -[ 93%] Generating avogadro_th.qm +[ 90%] Generating avogadro_th.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/th.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_th.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_th.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_th.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_th.qm -[ 93%] Generating avogadro_tr.qm +[ 90%] Generating avogadro_tr.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/tr.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_tr.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_tr.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_tr.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_tr.qm -[ 93%] Generating avogadro_ug.qm +[ 90%] Generating avogadro_ug.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/ug.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_ug.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_ug.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_ug.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_ug.qm -[ 93%] Generating avogadro_uk.qm +[ 90%] Generating avogadro_uk.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/uk.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_uk.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_uk.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_uk.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_uk.qm -[ 93%] Generating avogadro_vi.qm +[ 90%] Generating avogadro_vi.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/vi.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_vi.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_vi.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_vi.ts -qm /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_vi.qm -[ 93%] Generating avogadro_zh_CN.qm +[ 90%] Generating avogadro_zh_CN.qm cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lconvert -i /build/avogadro-1.2.0/i18n/avogadro/zh_CN.po -o /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_zh_CN.ts cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/lupdate-qt4 /build/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/avogadro_zh_CN.ts Scanning directory '/build/avogadro-1.2.0/avogadro/src'... @@ -11429,7 +10997,7 @@ make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f avogadro/src/CMakeFiles/avogadro-app.dir/build.make avogadro/src/CMakeFiles/avogadro-app.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/aboutdialog.cpp.o +[ 90%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/aboutdialog.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/aboutdialog.cpp.o -c /build/avogadro-1.2.0/avogadro/src/aboutdialog.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -11447,12 +11015,43 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 93%] Linking CXX shared module ../../../../lib/inputfileextension.so -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/cmake -E cmake_link_script CMakeFiles/inputfileextension.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/inputfileextension.so CMakeFiles/inputfileextension.dir/inputfileextension.cpp.o CMakeFiles/inputfileextension.dir/inputdialog.cpp.o CMakeFiles/inputfileextension.dir/abinitinputdialog.cpp.o CMakeFiles/inputfileextension.dir/daltoninputdialog.cpp.o CMakeFiles/inputfileextension.dir/gamessukinputdialog.cpp.o CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o CMakeFiles/inputfileextension.dir/psi4inputdialog.cpp.o CMakeFiles/inputfileextension.dir/qcheminputdialog.cpp.o CMakeFiles/inputfileextension.dir/teracheminputdialog.cpp.o CMakeFiles/inputfileextension.dir/lammpsinputdialog.cpp.o CMakeFiles/inputfileextension.dir/moc_inputfileextension.cxx.o CMakeFiles/inputfileextension.dir/moc_inputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_abinitinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_daltoninputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_gamessukinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_gaussianinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_molproinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_psi4inputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_teracheminputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_lammpsinputdialog.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 93%] Built target inputfileextension -[ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/addenginedialog.cpp.o +[ 90%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcadata.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/orcadata.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcadata.cpp +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/libavogadro/src/extensions/orca/orcadata.cpp:25: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 90%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/psi4inputdialog.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/psi4inputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/psi4inputdialog.cpp +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/psi4inputdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/psi4inputdialog.cpp:25: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 90%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/addenginedialog.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/addenginedialog.cpp.o -c /build/avogadro-1.2.0/avogadro/src/addenginedialog.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -11468,7 +11067,40 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/application.cpp.o +[ 90%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcaextension.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/moc_orcaextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca/moc_orcaextension.cxx +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcaextension.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca/moc_orcaextension.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 90%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/bond.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/bond.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/bond.cpp +In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33, + from /usr/include/limits.h:26, + from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/limits.h:194, + from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/syslimits.h:7, + from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/limits.h:34, + from /usr/include/boost/python/detail/wrap_python.hpp:61, + from /usr/include/boost/python/detail/prefix.hpp:13, + from /usr/include/boost/python/args.hpp:8, + from /usr/include/boost/python.hpp:11, + from /build/avogadro-1.2.0/libavogadro/src/python/bond.cpp:2: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 91%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/application.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/application.cpp.o -c /build/avogadro-1.2.0/avogadro/src/application.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -11486,7 +11118,46 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/detachedview.cpp.o +[ 91%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/qcheminputdialog.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/qcheminputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/qcheminputdialog.cpp +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/qcheminputdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/qcheminputdialog.cpp:25: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 92%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcainputdialog.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/moc_orcainputdialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca/moc_orcainputdialog.cxx +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcainputdialog.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca/moc_orcainputdialog.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 92%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/detachedview.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/detachedview.cpp.o -c /build/avogadro-1.2.0/avogadro/src/detachedview.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -11503,7 +11174,25 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/editcommands.cpp.o +[ 92%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcaanalysedialog.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/moc_orcaanalysedialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca/moc_orcaanalysedialog.cxx +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtGui/qwindowdefs.h:45, + from /usr/include/qt4/QtGui/qwidget.h:46, + from /usr/include/qt4/QtGui/qdialog.h:45, + from /usr/include/qt4/QtGui/QDialog:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcaanalysedialog.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca/moc_orcaanalysedialog.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 92%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/editcommands.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/editcommands.cpp.o -c /build/avogadro-1.2.0/avogadro/src/editcommands.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -11520,7 +11209,59 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/enginecolorswidget.cpp.o +[ 92%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/teracheminputdialog.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/teracheminputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/teracheminputdialog.cpp +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/teracheminputdialog.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/teracheminputdialog.cpp:26: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 92%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/camera.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/camera.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/camera.cpp +In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33, + from /usr/include/limits.h:26, + from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/limits.h:194, + from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/syslimits.h:7, + from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/limits.h:34, + from /usr/include/boost/python/detail/wrap_python.hpp:61, + from /usr/include/boost/python/detail/prefix.hpp:13, + from /usr/include/boost/python/args.hpp:8, + from /usr/include/boost/python.hpp:11, + from /build/avogadro-1.2.0/libavogadro/src/python/camera.cpp:2: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 92%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcaspectra.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/moc_orcaspectra.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca/moc_orcaspectra.cxx +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qatomic.h:45, + from /usr/include/qt4/QtCore/qvariant.h:45, + from /usr/include/qt4/QtCore/QVariant:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca/ui_orcaspectra.h:12, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcaspectra.h:26, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca/moc_orcaspectra.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 92%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/enginecolorswidget.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/enginecolorswidget.cpp.o -c /build/avogadro-1.2.0/avogadro/src/enginecolorswidget.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -11536,7 +11277,28 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineitemdelegate.cpp.o +[ 92%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/lammpsinputdialog.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/lammpsinputdialog.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/lammpsinputdialog.cpp +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/lammpsinputdialog.h:28, + from /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/lammpsinputdialog.cpp:25: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 92%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineitemdelegate.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/engineitemdelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/engineitemdelegate.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -11554,22 +11316,12 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 94%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/color.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/color.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/color.cpp -In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33, - from /usr/include/limits.h:26, - from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/limits.h:194, - from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/syslimits.h:7, - from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/limits.h:34, - from /usr/include/boost/python/detail/wrap_python.hpp:61, - from /usr/include/boost/python/detail/prefix.hpp:13, - from /usr/include/boost/python/args.hpp:8, - from /usr/include/boost/python.hpp:11, - from /build/avogadro-1.2.0/libavogadro/src/python/color.cpp:3: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ -[ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineitemmodel.cpp.o +[ 92%] Linking CXX shared module ../../../../lib/orcaextension.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca && /usr/bin/cmake -E cmake_link_script CMakeFiles/orcaextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/orcaextension.so CMakeFiles/orcaextension.dir/orcaextension.cpp.o CMakeFiles/orcaextension.dir/orcainputdialog.cpp.o CMakeFiles/orcaextension.dir/orcaanalysedialog.cpp.o CMakeFiles/orcaextension.dir/orcaspectra.cpp.o CMakeFiles/orcaextension.dir/orcadata.cpp.o CMakeFiles/orcaextension.dir/moc_orcaextension.cxx.o CMakeFiles/orcaextension.dir/moc_orcainputdialog.cxx.o CMakeFiles/orcaextension.dir/moc_orcaanalysedialog.cxx.o CMakeFiles/orcaextension.dir/moc_orcaspectra.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 92%] Built target orcaextension +[ 92%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineitemmodel.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/engineitemmodel.cpp.o -c /build/avogadro-1.2.0/avogadro/src/engineitemmodel.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -11585,7 +11337,7 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/enginelistview.cpp.o +[ 92%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/enginelistview.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/enginelistview.cpp.o -c /build/avogadro-1.2.0/avogadro/src/enginelistview.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -11606,7 +11358,7 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineprimitiveswidget.cpp.o +[ 92%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineprimitiveswidget.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/engineprimitiveswidget.cpp.o -c /build/avogadro-1.2.0/avogadro/src/engineprimitiveswidget.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -11622,7 +11374,7 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineviewwidget.cpp.o +[ 92%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineviewwidget.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/engineviewwidget.cpp.o -c /build/avogadro-1.2.0/avogadro/src/engineviewwidget.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -11639,8 +11391,8 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/flattabwidget.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/flattabwidget.cpp.o -c /build/avogadro-1.2.0/avogadro/src/flattabwidget.cpp +[ 92%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_inputfileextension.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_inputfileextension.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_inputfileextension.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -11649,14 +11401,19 @@ from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, - from /usr/include/qt4/QtCore/QObject:1, - from /build/avogadro-1.2.0/avogadro/src/flattabwidget.h:26, - from /build/avogadro-1.2.0/avogadro/src/flattabwidget.cpp:23: + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputfileextension.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_inputfileextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/glgraphicsview.cpp.o +[ 92%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/glgraphicsview.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/glgraphicsview.cpp.o -c /build/avogadro-1.2.0/avogadro/src/glgraphicsview.cpp +[ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/flattabwidget.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/flattabwidget.cpp.o -c /build/avogadro-1.2.0/avogadro/src/flattabwidget.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -11670,24 +11427,22 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/importdialog.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/importdialog.cpp.o -c /build/avogadro-1.2.0/avogadro/src/importdialog.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, - from /usr/include/qt4/QtCore/qatomic.h:45, - from /usr/include/qt4/QtCore/qvariant.h:45, - from /usr/include/qt4/QtCore/QVariant:1, - from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/ui_importdialog.h:12, - from /build/avogadro-1.2.0/avogadro/src/importdialog.h:28, - from /build/avogadro-1.2.0/avogadro/src/importdialog.cpp:25: + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/QObject:1, + from /build/avogadro-1.2.0/avogadro/src/flattabwidget.h:26, + from /build/avogadro-1.2.0/avogadro/src/flattabwidget.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/main.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/main.cpp.o -c /build/avogadro-1.2.0/avogadro/src/main.cpp +[ 93%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_inputdialog.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_inputdialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -11699,12 +11454,15 @@ from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, - from /build/avogadro-1.2.0/avogadro/src/main.cpp:27: + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 95%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/cube.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/cube.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/cube.cpp +[ 93%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/color.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/color.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/color.cpp In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/limits.h:194, @@ -11714,11 +11472,83 @@ from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, - from /build/avogadro-1.2.0/libavogadro/src/python/cube.cpp:3: + from /build/avogadro-1.2.0/libavogadro/src/python/color.cpp:3: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/importdialog.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/importdialog.cpp.o -c /build/avogadro-1.2.0/avogadro/src/importdialog.cpp +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qatomic.h:45, + from /usr/include/qt4/QtCore/qvariant.h:45, + from /usr/include/qt4/QtCore/QVariant:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/ui_importdialog.h:12, + from /build/avogadro-1.2.0/avogadro/src/importdialog.h:28, + from /build/avogadro-1.2.0/avogadro/src/importdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/mainwindow.cpp.o +[ 93%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_abinitinputdialog.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_abinitinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_abinitinputdialog.cxx +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qiodevice.h:46, + from /usr/include/qt4/QtCore/qprocess.h:45, + from /usr/include/qt4/QtCore/QProcess:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/abinitinputdialog.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_abinitinputdialog.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/main.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/main.cpp.o -c /build/avogadro-1.2.0/avogadro/src/main.cpp +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/avogadro/src/main.cpp:27: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 94%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_daltoninputdialog.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_daltoninputdialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_daltoninputdialog.cxx +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/daltoninputdialog.h:13, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_daltoninputdialog.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/mainwindow.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/mainwindow.cpp.o -c /build/avogadro-1.2.0/avogadro/src/mainwindow.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -11738,7 +11568,7 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/pluginitemmodel.cpp.o +[ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/pluginitemmodel.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/pluginitemmodel.cpp.o -c /build/avogadro-1.2.0/avogadro/src/pluginitemmodel.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -11757,7 +11587,28 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/pluginlistview.cpp.o +[ 94%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_gamessukinputdialog.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_gamessukinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_gamessukinputdialog.cxx +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessukinputdialog.h:30, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_gamessukinputdialog.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/pluginlistview.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/pluginlistview.cpp.o -c /build/avogadro-1.2.0/avogadro/src/pluginlistview.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -11776,7 +11627,7 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/pluginsettings.cpp.o +[ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/pluginsettings.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/pluginsettings.cpp.o -c /build/avogadro-1.2.0/avogadro/src/pluginsettings.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -11796,7 +11647,40 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/primitiveitemmodel.cpp.o +[ 94%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_gaussianinputdialog.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_gaussianinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_gaussianinputdialog.cxx +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qiodevice.h:46, + from /usr/include/qt4/QtCore/qprocess.h:45, + from /usr/include/qt4/QtCore/QProcess:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gaussianinputdialog.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_gaussianinputdialog.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 94%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/cube.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/cube.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/cube.cpp +In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33, + from /usr/include/limits.h:26, + from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/limits.h:194, + from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/syslimits.h:7, + from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/limits.h:34, + from /usr/include/boost/python/detail/wrap_python.hpp:61, + from /usr/include/boost/python/detail/prefix.hpp:13, + from /usr/include/boost/python/args.hpp:8, + from /usr/include/boost/python.hpp:11, + from /build/avogadro-1.2.0/libavogadro/src/python/cube.cpp:3: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/primitiveitemmodel.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/primitiveitemmodel.cpp.o -c /build/avogadro-1.2.0/avogadro/src/primitiveitemmodel.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -11812,26 +11696,49 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 95%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/eigen.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/eigen.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/eigen.cpp -In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33, - from /usr/include/limits.h:26, - from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/limits.h:194, - from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/syslimits.h:7, - from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/limits.h:34, - from /usr/include/boost/python/detail/wrap_python.hpp:61, - from /build/avogadro-1.2.0/libavogadro/src/python/eigen.cpp:4: +[ 94%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_molproinputdialog.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_molproinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_molproinputdialog.cxx +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/molproinputdialog.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_molproinputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -In file included from /usr/include/python2.7/numpy/ndarraytypes.h:1822, - from /usr/include/python2.7/numpy/ndarrayobject.h:12, - from /usr/include/python2.7/numpy/arrayobject.h:4, - from /build/avogadro-1.2.0/libavogadro/src/python/eigen.cpp:5: -/usr/include/python2.7/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] - #warning "Using deprecated NumPy API, disable it with " \ - ^~~~~~~ -[ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/primitivetreeview.cpp.o +[ 94%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_mopacinputdialog.cxx +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/mopacinputdialog.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_mopacinputdialog.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/primitivetreeview.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/primitivetreeview.cpp.o -c /build/avogadro-1.2.0/avogadro/src/primitivetreeview.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -11852,7 +11759,28 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreeeditor.cpp.o +[ 94%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_nwcheminputdialog.cxx +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/nwcheminputdialog.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_nwcheminputdialog.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreeeditor.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projecttreeeditor.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projecttreeeditor.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -11870,23 +11798,67 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 96%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/elementtranslator.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/elementtranslator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/elementtranslator.cpp -[ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreeitem.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projecttreeitem.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projecttreeitem.cpp +[ 95%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_psi4inputdialog.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_psi4inputdialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_psi4inputdialog.cxx +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/glwidget.h:32, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/psi4inputdialog.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_psi4inputdialog.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 95%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/eigen.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/eigen.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/eigen.cpp In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/limits.h:194, from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, - from /usr/include/boost/python/detail/prefix.hpp:13, - from /usr/include/boost/python/args.hpp:8, - from /usr/include/boost/python.hpp:11, - from /build/avogadro-1.2.0/libavogadro/src/python/elementtranslator.cpp:2: + from /build/avogadro-1.2.0/libavogadro/src/python/eigen.cpp:4: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +In file included from /usr/include/python2.7/numpy/ndarraytypes.h:1822, + from /usr/include/python2.7/numpy/ndarrayobject.h:12, + from /usr/include/python2.7/numpy/arrayobject.h:4, + from /build/avogadro-1.2.0/libavogadro/src/python/eigen.cpp:5: +/usr/include/python2.7/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] + #warning "Using deprecated NumPy API, disable it with " \ + ^~~~~~~ +[ 95%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_qcheminputdialog.cxx +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/qcheminputdialog.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_qcheminputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreeitem.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projecttreeitem.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projecttreeitem.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, @@ -11903,7 +11875,28 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreemodel.cpp.o +[ 95%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_teracheminputdialog.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_teracheminputdialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_teracheminputdialog.cxx +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/teracheminputdialog.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_teracheminputdialog.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreemodel.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projecttreemodel.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projecttreemodel.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -11921,6 +11914,27 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 96%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_lammpsinputdialog.cxx.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions -I/build/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_lammpsinputdialog.cxx.o -c /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_lammpsinputdialog.cxx +In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, + from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, + from /usr/include/c++/8/utility:68, + from /usr/include/c++/8/algorithm:60, + from /usr/include/qt4/QtCore/qglobal.h:68, + from /usr/include/qt4/QtCore/qnamespace.h:45, + from /usr/include/qt4/QtCore/qobjectdefs.h:45, + from /usr/include/qt4/QtCore/qobject.h:47, + from /usr/include/qt4/QtCore/qtranslator.h:45, + from /usr/include/qt4/QtCore/QTranslator:1, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/global.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/primitive.h:31, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include/avogadro/molecule.h:29, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/lammpsinputdialog.h:28, + from /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/moc_lammpsinputdialog.cxx:9: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ [ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreemodeldelegate.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projecttreemodeldelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projecttreemodeldelegate.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, @@ -11939,21 +11953,9 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 96%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/engine.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/engine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/engine.cpp -In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33, - from /usr/include/limits.h:26, - from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/limits.h:194, - from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/syslimits.h:7, - from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/limits.h:34, - from /usr/include/boost/python/detail/wrap_python.hpp:61, - from /usr/include/boost/python/detail/prefix.hpp:13, - from /usr/include/boost/python/args.hpp:8, - from /usr/include/boost/python.hpp:11, - from /build/avogadro-1.2.0/libavogadro/src/python/engine.cpp:2: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ +[ 96%] Linking CXX shared module ../../../../lib/inputfileextension.so +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput && /usr/bin/cmake -E cmake_link_script CMakeFiles/inputfileextension.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/inputfileextension.so CMakeFiles/inputfileextension.dir/inputfileextension.cpp.o CMakeFiles/inputfileextension.dir/inputdialog.cpp.o CMakeFiles/inputfileextension.dir/abinitinputdialog.cpp.o CMakeFiles/inputfileextension.dir/daltoninputdialog.cpp.o CMakeFiles/inputfileextension.dir/gamessukinputdialog.cpp.o CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o CMakeFiles/inputfileextension.dir/psi4inputdialog.cpp.o CMakeFiles/inputfileextension.dir/qcheminputdialog.cpp.o CMakeFiles/inputfileextension.dir/teracheminputdialog.cpp.o CMakeFiles/inputfileextension.dir/lammpsinputdialog.cpp.o CMakeFiles/inputfileextension.dir/moc_inputfileextension.cxx.o CMakeFiles/inputfileextension.dir/moc_inputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_abinitinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_daltoninputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_gamessukinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_gaussianinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_molproinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_psi4inputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_teracheminputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_lammpsinputdialog.cxx.o -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel [ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/savedialog.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/savedialog.cpp.o -c /build/avogadro-1.2.0/avogadro/src/savedialog.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, @@ -11971,6 +11973,23 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 96%] Built target inputfileextension +[ 96%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/elementtranslator.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/elementtranslator.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/elementtranslator.cpp +In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33, + from /usr/include/limits.h:26, + from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/limits.h:194, + from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/syslimits.h:7, + from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/limits.h:34, + from /usr/include/boost/python/detail/wrap_python.hpp:61, + from /usr/include/boost/python/detail/prefix.hpp:13, + from /usr/include/boost/python/args.hpp:8, + from /usr/include/boost/python.hpp:11, + from /build/avogadro-1.2.0/libavogadro/src/python/elementtranslator.cpp:2: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ [ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/settingsdialog.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/settingsdialog.cpp.o -c /build/avogadro-1.2.0/avogadro/src/settingsdialog.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, @@ -11987,6 +12006,21 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 96%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/engine.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/engine.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/engine.cpp +In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33, + from /usr/include/limits.h:26, + from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/limits.h:194, + from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/syslimits.h:7, + from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/limits.h:34, + from /usr/include/boost/python/detail/wrap_python.hpp:61, + from /usr/include/boost/python/detail/prefix.hpp:13, + from /usr/include/boost/python/args.hpp:8, + from /usr/include/boost/python.hpp:11, + from /build/avogadro-1.2.0/libavogadro/src/python/engine.cpp:2: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ [ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/atomdelegate.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/atomdelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projectdelegates/atomdelegate.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, @@ -12041,7 +12075,22 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 97%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/moleculedelegate.cpp.o +[ 97%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/extension.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/extension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/extension.cpp +In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33, + from /usr/include/limits.h:26, + from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/limits.h:194, + from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/syslimits.h:7, + from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/limits.h:34, + from /usr/include/boost/python/detail/wrap_python.hpp:61, + from /usr/include/boost/python/detail/prefix.hpp:13, + from /usr/include/boost/python/args.hpp:8, + from /usr/include/boost/python.hpp:11, + from /build/avogadro-1.2.0/libavogadro/src/python/extension.cpp:2: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ +[ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/moleculedelegate.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/moleculedelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projectdelegates/moleculedelegate.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -12059,7 +12108,7 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 97%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/residuedelegate.cpp.o +[ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/residuedelegate.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/residuedelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projectdelegates/residuedelegate.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, from /usr/include/arm-linux-gnueabihf/c++/8/bits/c++config.h:508, @@ -12077,21 +12126,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/extension.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/extension.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/extension.cpp -In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33, - from /usr/include/limits.h:26, - from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/limits.h:194, - from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/syslimits.h:7, - from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/limits.h:34, - from /usr/include/boost/python/detail/wrap_python.hpp:61, - from /usr/include/boost/python/detail/prefix.hpp:13, - from /usr/include/boost/python/args.hpp:8, - from /usr/include/boost/python.hpp:11, - from /build/avogadro-1.2.0/libavogadro/src/python/extension.cpp:2: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ [ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/selectiondelegate.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/selectiondelegate.cpp.o -c /build/avogadro-1.2.0/avogadro/src/projectdelegates/selectiondelegate.cpp In file included from /usr/include/arm-linux-gnueabihf/c++/8/bits/os_defines.h:39, @@ -12136,11 +12170,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 98%] Linking CXX executable ../../bin/avogadro -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/avogadro-app.dir/link.txt --verbose=1 -/usr/bin/c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -rdynamic CMakeFiles/avogadro-app.dir/aboutdialog.cpp.o CMakeFiles/avogadro-app.dir/addenginedialog.cpp.o CMakeFiles/avogadro-app.dir/application.cpp.o CMakeFiles/avogadro-app.dir/detachedview.cpp.o CMakeFiles/avogadro-app.dir/editcommands.cpp.o CMakeFiles/avogadro-app.dir/enginecolorswidget.cpp.o CMakeFiles/avogadro-app.dir/engineitemdelegate.cpp.o CMakeFiles/avogadro-app.dir/engineitemmodel.cpp.o CMakeFiles/avogadro-app.dir/enginelistview.cpp.o CMakeFiles/avogadro-app.dir/engineprimitiveswidget.cpp.o CMakeFiles/avogadro-app.dir/engineviewwidget.cpp.o CMakeFiles/avogadro-app.dir/flattabwidget.cpp.o CMakeFiles/avogadro-app.dir/glgraphicsview.cpp.o CMakeFiles/avogadro-app.dir/importdialog.cpp.o CMakeFiles/avogadro-app.dir/main.cpp.o CMakeFiles/avogadro-app.dir/mainwindow.cpp.o CMakeFiles/avogadro-app.dir/pluginitemmodel.cpp.o CMakeFiles/avogadro-app.dir/pluginlistview.cpp.o CMakeFiles/avogadro-app.dir/pluginsettings.cpp.o CMakeFiles/avogadro-app.dir/primitiveitemmodel.cpp.o CMakeFiles/avogadro-app.dir/primitivetreeview.cpp.o CMakeFiles/avogadro-app.dir/projecttreeeditor.cpp.o CMakeFiles/avogadro-app.dir/projecttreeitem.cpp.o CMakeFiles/avogadro-app.dir/projecttreemodel.cpp.o CMakeFiles/avogadro-app.dir/projecttreemodeldelegate.cpp.o CMakeFiles/avogadro-app.dir/savedialog.cpp.o CMakeFiles/avogadro-app.dir/settingsdialog.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/atomdelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/bonddelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/labeldelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/moleculedelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/residuedelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/selectiondelegate.cpp.o CMakeFiles/avogadro-app.dir/qrc_avogadro.cxx.o -o ../../bin/avogadro -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lopenbabel ../../lib/libavogadro.so.1.2.0 -lX11 -lboost_python -lX11 -lboost_python -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 98%] Built target avogadro-app [ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/glwidget.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/glwidget.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/glwidget.cpp In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33, @@ -12156,8 +12185,14 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ +[ 98%] Linking CXX executable ../../bin/avogadro +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/avogadro-app.dir/link.txt --verbose=1 +/usr/bin/c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -rdynamic CMakeFiles/avogadro-app.dir/aboutdialog.cpp.o CMakeFiles/avogadro-app.dir/addenginedialog.cpp.o CMakeFiles/avogadro-app.dir/application.cpp.o CMakeFiles/avogadro-app.dir/detachedview.cpp.o CMakeFiles/avogadro-app.dir/editcommands.cpp.o CMakeFiles/avogadro-app.dir/enginecolorswidget.cpp.o CMakeFiles/avogadro-app.dir/engineitemdelegate.cpp.o CMakeFiles/avogadro-app.dir/engineitemmodel.cpp.o CMakeFiles/avogadro-app.dir/enginelistview.cpp.o CMakeFiles/avogadro-app.dir/engineprimitiveswidget.cpp.o CMakeFiles/avogadro-app.dir/engineviewwidget.cpp.o CMakeFiles/avogadro-app.dir/flattabwidget.cpp.o CMakeFiles/avogadro-app.dir/glgraphicsview.cpp.o CMakeFiles/avogadro-app.dir/importdialog.cpp.o CMakeFiles/avogadro-app.dir/main.cpp.o CMakeFiles/avogadro-app.dir/mainwindow.cpp.o CMakeFiles/avogadro-app.dir/pluginitemmodel.cpp.o CMakeFiles/avogadro-app.dir/pluginlistview.cpp.o CMakeFiles/avogadro-app.dir/pluginsettings.cpp.o CMakeFiles/avogadro-app.dir/primitiveitemmodel.cpp.o CMakeFiles/avogadro-app.dir/primitivetreeview.cpp.o CMakeFiles/avogadro-app.dir/projecttreeeditor.cpp.o CMakeFiles/avogadro-app.dir/projecttreeitem.cpp.o CMakeFiles/avogadro-app.dir/projecttreemodel.cpp.o CMakeFiles/avogadro-app.dir/projecttreemodeldelegate.cpp.o CMakeFiles/avogadro-app.dir/savedialog.cpp.o CMakeFiles/avogadro-app.dir/settingsdialog.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/atomdelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/bonddelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/labeldelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/moleculedelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/residuedelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/selectiondelegate.cpp.o CMakeFiles/avogadro-app.dir/qrc_avogadro.cxx.o -o ../../bin/avogadro -Wl,-rpath,/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/lib: -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lopenbabel ../../lib/libavogadro.so.1.2.0 -lX11 -lboost_python -lX11 -lboost_python +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 98%] Built target avogadro-app [ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/main.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/main.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/main.cpp +[ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/mesh.cpp.o In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/limits.h:194, @@ -12168,7 +12203,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/mesh.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/mesh.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/mesh.cpp In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33, from /usr/include/limits.h:26, @@ -12247,18 +12281,6 @@ /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ -[ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/moleculelist.cpp.o -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/moleculelist.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/moleculelist.cpp -In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33, - from /usr/include/limits.h:26, - from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/limits.h:194, - from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/syslimits.h:7, - from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/limits.h:34, - from /usr/include/python2.7/Python.h:19, - from /build/avogadro-1.2.0/libavogadro/src/python/moleculelist.cpp:1: -/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] - # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" - ^~~~~~~ /build/avogadro-1.2.0/libavogadro/src/python/molecule.cpp: In function 'void export_Molecule()': /build/avogadro-1.2.0/libavogadro/src/python/molecule.cpp:88:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr >("Molecule", no_init) @@ -12278,6 +12300,18 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +[ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/moleculelist.cpp.o +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/moleculelist.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/moleculelist.cpp +In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33, + from /usr/include/limits.h:26, + from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/limits.h:194, + from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/syslimits.h:7, + from /usr/lib/gcc/arm-linux-gnueabihf/8/include-fixed/limits.h:34, + from /usr/include/python2.7/Python.h:19, + from /build/avogadro-1.2.0/libavogadro/src/python/moleculelist.cpp:1: +/usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] + # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" + ^~~~~~~ [ 99%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/navigate.cpp.o cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/build/avogadro-1.2.0/libavogadro/include -I/build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/avogadro-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/navigate.cpp.o -c /build/avogadro-1.2.0/libavogadro/src/python/navigate.cpp In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33, @@ -12633,7 +12667,7 @@ dh_prep dh_installdirs dh_auto_install - cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/avogadro-1.2.0/debian/tmp AM_UPDATE_INFO_DIR=no + cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/build/avogadro-1.2.0/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/avogadro-1.2.0 -B/build/avogadro-1.2.0/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/CMakeFiles /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks @@ -12642,45 +12676,45 @@ make -f libavogadro/src/colors/CMakeFiles/elementcolor.dir/build.make libavogadro/src/colors/CMakeFiles/elementcolor.dir/depend make -f libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build.make libavogadro/src/engines/CMakeFiles/bsdyengine.dir/depend make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/depend +make -f libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build.make libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/CMakeFiles/elementcolor.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry/libmsym /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/bsdyengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/CMakeFiles/navigatetool.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build.make libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make[3]: Nothing to be done for 'libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build'. +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/colors/CMakeFiles/elementcolor.dir/build.make libavogadro/src/colors/CMakeFiles/elementcolor.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build.make libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build +[ 1%] Built target msym +make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/depend make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/elementcolor.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 1%] Built target elementcolor +make -f libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build.make libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/navigatetool.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 0%] Built target elementcolor -make -f libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build.make libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry/libmsym /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/DependInfo.cmake --color= -[ 1%] Built target bsdyengine -make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/depend -[ 2%] Built target navigatetool -make -f libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build.make libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/tubegen /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build.make libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Nothing to be done for 'libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build'. -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/DependInfo.cmake --color= -[ 3%] Built target msym +[ 2%] Built target bsdyengine +[ 3%] Built target navigatetool make -f libavogadro/src/CMakeFiles/avogadro.dir/build.make libavogadro/src/CMakeFiles/avogadro.dir/depend make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build.make libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build @@ -12688,15 +12722,13 @@ make[3]: Nothing to be done for 'libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' [ 4%] Built target tubegen -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/CMakeFiles/avogadro.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/CMakeFiles/avogadro.dir/build.make libavogadro/src/CMakeFiles/avogadro.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/CMakeFiles/avogadro.dir/DependInfo.cmake --color= [ 6%] Built target OpenQube make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' @@ -12706,180 +12738,178 @@ make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 6%] Built target qube +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/CMakeFiles/avogadro.dir/build.make libavogadro/src/CMakeFiles/avogadro.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'libavogadro/src/CMakeFiles/avogadro.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 6%] Built target qube [ 25%] Built target avogadro make -f libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build.make libavogadro/src/engines/CMakeFiles/qtaimengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/forceengine.dir/build.make libavogadro/src/engines/CMakeFiles/forceengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/hbondengine.dir/build.make libavogadro/src/engines/CMakeFiles/hbondengine.dir/depend +make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/forceengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/qtaimengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/hbondengine.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/labelengine.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/engines/CMakeFiles/forceengine.dir/build.make libavogadro/src/engines/CMakeFiles/forceengine.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/engines/CMakeFiles/hbondengine.dir/build.make libavogadro/src/engines/CMakeFiles/hbondengine.dir/build +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build.make libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/engines/CMakeFiles/hbondengine.dir/build.make libavogadro/src/engines/CMakeFiles/hbondengine.dir/build +make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/forceengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/hbondengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 25%] Built target forceengine +make -f libavogadro/src/engines/CMakeFiles/ringengine.dir/build.make libavogadro/src/engines/CMakeFiles/ringengine.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 25%] Built target forceengine -make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/labelengine.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/ringengine.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/labelengine.dir/build'. +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' [ 26%] Built target hbondengine -make -f libavogadro/src/engines/CMakeFiles/ringengine.dir/build.make libavogadro/src/engines/CMakeFiles/ringengine.dir/depend -[ 27%] Built target qtaimengine make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/ringengine.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/axesengine.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/build +[ 27%] Built target qtaimengine +make -f libavogadro/src/engines/CMakeFiles/stickengine.dir/build.make libavogadro/src/engines/CMakeFiles/stickengine.dir/depend +[ 27%] Built target labelengine make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/labelengine.dir/build'. -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/stickengine.dir/DependInfo.cmake --color= +make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/ribbonengine.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/engines/CMakeFiles/ringengine.dir/build.make libavogadro/src/engines/CMakeFiles/ringengine.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/build -[ 27%] Built target labelengine -make -f libavogadro/src/engines/CMakeFiles/stickengine.dir/build.make libavogadro/src/engines/CMakeFiles/stickengine.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/stickengine.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/engines/CMakeFiles/stickengine.dir/build.make libavogadro/src/engines/CMakeFiles/stickengine.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/ringengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/axesengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build [ 28%] Built target ringengine -make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/depend -[ 28%] Built target axesengine make -f libavogadro/src/engines/CMakeFiles/wireengine.dir/build.make libavogadro/src/engines/CMakeFiles/wireengine.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/ribbonengine.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/wireengine.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/axesengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/engines/CMakeFiles/stickengine.dir/build.make libavogadro/src/engines/CMakeFiles/stickengine.dir/build -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/engines/CMakeFiles/wireengine.dir/build.make libavogadro/src/engines/CMakeFiles/wireengine.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/stickengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 28%] Built target axesengine +make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/wireengine.dir/build'. -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/cartoonengine.dir/DependInfo.cmake --color= [ 28%] Built target stickengine -make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/depend -[ 28%] Built target ribbonengine make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/depend -[ 29%] Built target wireengine -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/cartoonengine.dir/DependInfo.cmake --color= -make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/depend +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/engines/CMakeFiles/wireengine.dir/build.make libavogadro/src/engines/CMakeFiles/wireengine.dir/build +[ 28%] Built target ribbonengine make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/sphereengine.dir/DependInfo.cmake --color= +make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/dipoleengine.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/wireengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build'. +[ 29%] Built target wireengine +make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/depend make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/polygonengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/sphereengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 30%] Built target dipoleengine -make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/depend -[ 31%] Built target sphereengine +[ 30%] Built target sphereengine make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/depend -[ 31%] Built target cartoonengine -make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/polygonengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/simplewireengine.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build'. +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/surfaceengine.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/build +[ 30%] Built target cartoonengine +make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/depend +[ 31%] Built target dipoleengine +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/engines/CMakeFiles/simplewireengine.dir/DependInfo.cmake --color= +make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/polygonengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build +[ 31%] Built target polygonengine +make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/depend make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build'. +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/CMakeFiles/manipulatetool.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/polygonengine.dir/build'. +make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 32%] Built target simplewireengine -make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/depend -[ 32%] Built target polygonengine -make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/depend -[ 33%] Built target surfaceengine -make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/CMakeFiles/manipulatetool.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build +[ 32%] Built target surfaceengine +make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/depend +[ 33%] Built target simplewireengine make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build +make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/CMakeFiles/drawtool.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 34%] Built target selectrotatetool +make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 34%] Built target selectrotatetool -make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build'. -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/CMakeFiles/autoopttool.dir/DependInfo.cmake --color= [ 35%] Built target manipulatetool -make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/depend -[ 36%] Built target bondcentrictool make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/CMakeFiles/drawtool.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/CMakeFiles/autoopttool.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/CMakeFiles/autorotatetool.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' @@ -12887,376 +12917,380 @@ make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/drawtool.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build'. +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/drawtool.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build -[ 37%] Built target drawtool +[ 36%] Built target bondcentrictool make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build'. -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 37%] Built target drawtool +make -f libavogadro/src/tools/CMakeFiles/aligntool.dir/build.make libavogadro/src/tools/CMakeFiles/aligntool.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/autoopttool.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build'. +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/CMakeFiles/aligntool.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' [ 38%] Built target autoopttool -make -f libavogadro/src/tools/CMakeFiles/aligntool.dir/build.make libavogadro/src/tools/CMakeFiles/aligntool.dir/depend -[ 38%] Built target autorotatetool make -f libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build.make libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/tools/CMakeFiles/aligntool.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/DependInfo.cmake --color= -[ 38%] Built target clickmeasuretool +[ 38%] Built target autorotatetool make -f libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build.make libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/depend +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build.make libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/tools/CMakeFiles/aligntool.dir/build.make libavogadro/src/tools/CMakeFiles/aligntool.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build.make libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build +make -f libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build.make libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 39%] Built target gl2psextension +[ 38%] Built target clickmeasuretool make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/aligntool.dir/build'. +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build.make libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/aligntool.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 40%] Built target networkfetchextension -make -f libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build.make libavogadro/src/extensions/CMakeFiles/shaderextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/supercellextension.dir/DependInfo.cmake --color= -[ 40%] Built target aligntool -make -f libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build.make libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/depend +[ 38%] Built target aligntool +make -f libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build.make libavogadro/src/extensions/CMakeFiles/shaderextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build'. +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 39%] Built target gl2psextension make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/shaderextension.dir/DependInfo.cmake --color= +make -f libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build.make libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 40%] Built target networkfetchextension +make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build +make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/propextension.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build.make libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build.make libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build +[ 41%] Built target supercellextension +make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build'. +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 41%] Built target fileimportextension -make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/depend [ 41%] Built target shaderextension -make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/depend -[ 42%] Built target supercellextension make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/propextension.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 42%] Built target fileimportextension +make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/depend make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build -make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/propextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build'. +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/animationextension.dir/DependInfo.cmake --color= +[ 43%] Built target propextension +make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/depend make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 42%] Built target h2methylextension -make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/depend +make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/propextension.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 43%] Built target cartesianextension -make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/animationextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/DependInfo.cmake --color= -[ 44%] Built target propextension +[ 44%] Built target cartesianextension make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/build -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 44%] Built target h2methylextension +make -f libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build.make libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build'. +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/animationextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 45%] Built target invertchiralextension -make -f libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build.make libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/depend -[ 47%] Built target forcefieldextension +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build +[ 46%] Built target animationextension make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/depend -[ 49%] Built target animationextension -make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 49%] Built target hydrogensextension -make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/depend make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build.make libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build +[ 47%] Built target invertchiralextension +make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/depend +[ 49%] Built target forcefieldextension +make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 49%] Built target insertpeptideextension +[ 50%] Built target vrmlextension make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/selectextension.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/build -[ 50%] Built target vrmlextension +[ 50%] Built target insertpeptideextension make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/selectextension.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 50%] Built target selectextension +make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/build +[ 50%] Built target hydrogensextension make -f libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build.make libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/depend -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build'. +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' [ 52%] Built target insertfragmentextension make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/depend +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/selectextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/DependInfo.cmake --color= +[ 52%] Built target selectextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build.make libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build -[ 52%] Built target insertdnaextension make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/depend -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/CMakeFiles/povrayextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 53%] Built target molecularpropextension +make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build +[ 52%] Built target insertdnaextension make -f libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build.make libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build'. +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/symmetry /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/DependInfo.cmake --color= -[ 54%] Built target pythonterminal +[ 53%] Built target molecularpropextension make -f libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build.make libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/depend make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build'. +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 54%] Built target pythonterminal +make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/depend make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build.make libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/crystallography /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/DependInfo.cmake --color= -[ 55%] Built target povrayextension +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/depend -[ 56%] Built target symmetryextension +[ 55%] Built target povrayextension make -f libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/DependInfo.cmake --color= +[ 56%] Built target symmetryextension +make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/DependInfo.cmake --color= +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build.make libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build [ 57%] Built target vibrationextension -make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/depend +make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/DependInfo.cmake --color= -[ 62%] Built target crystallographyextension -make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/depend +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/DependInfo.cmake --color= -[ 66%] Built target spectraextension +[ 62%] Built target crystallographyextension make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make[3]: Nothing to be done for 'libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build +[ 66%] Built target spectraextension +make -f libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/depend +[ 68%] Built target orbitalextension +make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Nothing to be done for 'libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build'. +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build -[ 68%] Built target orbitalextension +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/depend -[ 69%] Built target surfaceextension -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/qtaim /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/DependInfo.cmake --color= -make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/DependInfo.cmake --color= +[ 69%] Built target surfaceextension make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build -[ 70%] Built target swcntbuilderextension make -f libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/depend -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 71%] Built target qtaimextension +[ 70%] Built target swcntbuilderextension make -f libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build.make libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/depend +[ 71%] Built target qtaimextension +make -f libavogadro/src/colors/CMakeFiles/smartscolor.dir/build.make libavogadro/src/colors/CMakeFiles/smartscolor.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/CMakeFiles/smartscolor.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 73%] Built target gamessextension -make -f libavogadro/src/colors/CMakeFiles/smartscolor.dir/build.make libavogadro/src/colors/CMakeFiles/smartscolor.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/extensions/orca /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/DependInfo.cmake --color= +[ 73%] Built target gamessextension +make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/CMakeFiles/smartscolor.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/CMakeFiles/customcolor.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/colors/CMakeFiles/smartscolor.dir/build.make libavogadro/src/colors/CMakeFiles/smartscolor.dir/build +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/smartscolor.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build.make libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build +make -f libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build [ 73%] Built target smartscolor -make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/depend -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Nothing to be done for 'libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/CMakeFiles/customcolor.dir/DependInfo.cmake --color= -[ 79%] Built target inputfileextension +make -f libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build.make libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/CMakeFiles/distancecolor.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Nothing to be done for 'libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build'. -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/customcolor.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/build -[ 81%] Built target orcaextension +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/CMakeFiles/distancecolor.dir/DependInfo.cmake --color= +[ 73%] Built target customcolor make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/depend -make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/CMakeFiles/residuecolor.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/customcolor.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/distancecolor.dir/build'. +make[3]: Nothing to be done for 'libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 81%] Built target customcolor +[ 79%] Built target inputfileextension make -f libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build.make libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/DependInfo.cmake --color= -[ 81%] Built target distancecolor -make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/depend +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/CMakeFiles/chargecolor.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/distancecolor.dir/build'. +make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +[ 79%] Built target distancecolor +[ 81%] Built target orcaextension +make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/depend +make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/depend +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/colors /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/colors/CMakeFiles/chargecolor.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/residuecolor.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build.make libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build +make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' +cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/python /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python/CMakeFiles/python-module.dir/DependInfo.cmake --color= [ 82%] Built target residuecolor -make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/depend +make -f avogadro/src/CMakeFiles/avogadro-app.dir/build.make avogadro/src/CMakeFiles/avogadro-app.dir/depend make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/build make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/libavogadro/src/python /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/libavogadro/src/python/CMakeFiles/python-module.dir/DependInfo.cmake --color= [ 82%] Built target atomindexcolor -make -f avogadro/src/CMakeFiles/avogadro-app.dir/build.make avogadro/src/CMakeFiles/avogadro-app.dir/depend make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/chargecolor.dir/build'. make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' -[ 83%] Built target chargecolor make[3]: Entering directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' cd /build/avogadro-1.2.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-1.2.0 /build/avogadro-1.2.0/avogadro/src /build/avogadro-1.2.0/obj-arm-linux-gnueabihf /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src /build/avogadro-1.2.0/obj-arm-linux-gnueabihf/avogadro/src/CMakeFiles/avogadro-app.dir/DependInfo.cmake --color= +[ 83%] Built target chargecolor make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/build make[3]: Leaving directory '/build/avogadro-1.2.0/obj-arm-linux-gnueabihf' @@ -13285,989 +13319,989 @@ -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/cmake/FindEigen3.cmake -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/avogadro/1_2/cmake/FindGLEW.cmake -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkynes +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkynes/propyne.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkynes/acetylene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C32.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C36.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C24.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C60-buckminsterfullerene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C78.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C20.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C28.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C50.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C70.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C80.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C240.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C26.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C30.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/PCBM.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C76.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/PC70BM.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C180.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/steroids +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/steroids/cholesterol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/steroids/estradiol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/steroids/testosterone.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/acenaphthylene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/acenaphthenequinone.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/4H-chromene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/benzothiophene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/nitrobenzene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/1H-indene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/coumarin.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/aniline.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/isoquinoline.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/2H-chromene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/benzaldehyde.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/benzene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/1H-indole.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/9H-carbazole.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/1H-indene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/tetralin.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/1_10-phenanthroline.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/benzofuran.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/toluene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/acenaphthenequinone.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/phthalimide.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/caffeine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/anthracene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/anisole.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/phenol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/benzothiophene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/9H-xanthene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/benzoyl_chloride.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/naphthalene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/9H-carbazole.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/7H-purine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/benzoic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/acenaphthene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/1_10-phenanthroline.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/acenaphthylene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/phenanthrene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/quinoline.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/tetralin.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/chromone.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/2H-chromene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/coumarin.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/cinnoline.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/7H-purine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/4H-chromene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/aniline.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/uric_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/naphthalene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/acridine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/benzoyl_chloride.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/quinoline.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/toluene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/quinazoline.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/isoquinoline.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/benzene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/acridine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/uric_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/anthracene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/phenanthrene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/9H-fluorene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/acenaphthene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/caffeine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/1_8-naphthyridine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/octanoic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/decanoic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/pentanoic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/hexanoic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/myristic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/linolenic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/arachidonic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/oleic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/linoleic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/stearic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/lauric_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/palmitic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/cervonic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/triethylamine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/1H-azepine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/trimethylamine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/methylamine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/piperidine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/pyrrolidine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/ammonia.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/2-aminopropane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/S-sec-butylamine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/dimethylamine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/azepane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/triethylenediamine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/piperazine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/diethylamine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/tert-butylamine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/ethylamine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ketones --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ketones/butanone.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ketones/acetone.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ketones/p-benzoquinone.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ketones/cyclohexanone.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ketones/methyl_vinyl_ketone.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C240.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C26.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C78.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C76.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C24.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C28.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C20.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C32.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C180.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C70.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C36.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C80.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/PC70BM.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C50.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C30.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/C60-buckminsterfullerene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fullerenes/PCBM.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/9H-xanthene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/phthalimide.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aromatics/anisole.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-hex-3-ene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/2-methylbut-2-ene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-hex-2-ene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-but-2-ene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/ethene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/E-hex-3-ene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/E-hept-3-ene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/E-oct-4-ene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/E-pent-2-ene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/pent-1-ene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/E-oct-2-ene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/3E-penta-1_3-diene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/E-hept-2-ene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/E-oct-3-ene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/oct-1-ene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-hept-3-ene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/propene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-oct-4-ene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/3Z-penta-1_3-diene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/but-1-ene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-hept-2-ene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-oct-3-ene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-pent-2-ene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/2-methylbuta-1_3-diene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/hex-1-ene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/hept-1-ene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/E-hex-2-ene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/3Z_3-ethylhepta-1_3-diene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-oct-2-ene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/E-but-2-ene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/macrocycles +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/macrocycles/porphin.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/macrocycles/phthalocyanine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/octane-1-thiol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/proprane-2-thiol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/proprane-1-thiol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/hexane-1-thiol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/ethane-1_2-dithiol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/pentane-1-thiol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/methanethiol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/R_butane-2-thiol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/ethanethiol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/2-methylproprane-2-thiol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/butane-1-thiol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/heptane-1-thiol.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/sulfoxides -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/sulfoxides/dimethyl_sulfoxide.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aldehydes --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aldehydes/formaldehyde.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aldehydes/acetaldehyde.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nitriles +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nitriles/isobutyronitrile.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nitriles/propionitrile.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nitriles/1_1_1-trichloroacetonitrile.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nitriles/acetonitrile.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nitriles/butyronitrile.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ligands +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ligands/Cp-cyclopentadienyl.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amides +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amides/ethyl_carbamate.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amides/oxamide.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amides/N_N-dimethylacetamide.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amides/N_N-dimethylformamide.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amides/acetamide.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nucleobases +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nucleobases/uracil.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nucleobases/adenine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nucleobases/guanine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nucleobases/thymine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nucleobases/cytosine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/ethylmethylether.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/dipropylether.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/diisopropylether.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/diethylether.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/tetrahydropyran.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/tetrahydrofuran.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/dibutylether.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/1_4-dioxane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/dimethylether.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/di-tert-butylether.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/coordination +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/coordination/4-planar.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/coordination/5-square-pyramidal.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/coordination/3-trigonal-pyramidal.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/coordination/6-octahedral.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/coordination/4-tetrahedral.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/coordination/3-trigonal-planar.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/coordination/5-trigonal-bipyramidal.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclohepta-1_3-diene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclohepta-1_4-diene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclohepta-1_3_5-triene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/Z-cycloheptene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclohexene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclohexa-1_3-diene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclopenta-1_3-diene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclohexa-1_4-diene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/Z-cyclooctene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclopentene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cycloocta-1_3_5_7-tetraene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cycloocta-1_3_5-triene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cycloocta-1_3-diene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclodecane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclobutane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclooctane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclohexane-twist-boat.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cis-decahydronaphthalene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/abietic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclohexane-chair.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/adamantane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/norbornane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclohexane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclopropane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclopentane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cubane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/adamantane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/abietic_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/1R-camphene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclononane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclohexane-twist-boat.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/1R-camphor.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/trans-decahydronaphthalene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclooctane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclohexane-chair.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cis-decahydronaphthalene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cycloheptane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclononane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclobutane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclodecane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/trans-decahydronaphthalene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/norbornane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclohexane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclopentane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbamides -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbamides/urea.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-glucuronopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-rhamnopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-psicopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-mannopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-ribopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-lyxopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-L-ribopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-rhamnopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-lyxopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-mannopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-glucopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-idopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-glucopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-ribopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-sorbopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-allopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-L-xylopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-lyxopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-talopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-xylopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-ribopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-fucopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-L-arabinopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-gulopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-galactopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-arabinopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-arabinopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-fucopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-xylopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-galactopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-allopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-fucopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-L-lyxopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-idopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-fructopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-galacturonopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-xylopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-arabinopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-gulopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-galactopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-rhamnopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-tagatopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-tagatopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-talopyranose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/steroids --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/steroids/cholesterol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/steroids/testosterone.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/steroids/estradiol.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-serine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-threonine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-phenylalanine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-alanine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-tryptophan.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-threonine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-leucine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-cysteine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-proline.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-tryptophan.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-isoleucine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-asparagine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-leucine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-tyrosine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-serine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-allo-threonine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-serine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-arginine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/glycine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-histidine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-phenylalanine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-cysteine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-isoleucine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-glutamine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-tyrosine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-aspartic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-glutamine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-threonine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-asparagine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-alanine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-histidine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-allo-isoleucine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-glutamic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-tryptophan.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-aspartic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-allo-threonine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-lysine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-glutamic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-proline.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-aspartic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-lysine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-tyrosine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-valine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-histidine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-isoleucine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-arginine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-tyrosine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-aspartic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-isoleucine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-asparagine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-valine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-4-nitrophenylalanine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-methionine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-allo-isoleucine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-cysteine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-methionine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-lysine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-alanine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-leucine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-proline.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-alanine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/coordination --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/coordination/5-square-pyramidal.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/coordination/3-trigonal-planar.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/coordination/5-trigonal-bipyramidal.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/coordination/3-trigonal-pyramidal.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/coordination/4-planar.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/coordination/4-tetrahedral.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/coordination/6-octahedral.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-glutamine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-serine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-threonine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-glutamine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-histidine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-methionine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-arginine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-tryptophan.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-cysteine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-4-nitrophenylalanine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-leucine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/glycine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-glutamic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/propane-1_2_3-triol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/ethanol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/but-2-yne-1_4-diol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/propan-2-ol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/2-aminoethanol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/cyclohexanol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/methanol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/propan-1-ol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/ethane-1_2-diol.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/cyclopentanol.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/tetracosane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/hexadecane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/dodecane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/decane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/pentane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/heptane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/tridecane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/octane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/hexane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/hexadecane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/butane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/undecane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/heptane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/pentadecane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/propane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/eicosane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/methane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/tetradecane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/nonane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/ethane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/propane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/tetradecane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/2-methylpropane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ligands --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ligands/Cp-cyclopentadienyl.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/tridecane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/dodecane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/decane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/tetracosane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/pentane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/methane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/undecane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkanes/hexane.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/water.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nucleobases --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nucleobases/thymine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nucleobases/uracil.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nucleobases/guanine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nucleobases/adenine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nucleobases/cytosine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cycloocta-1_3-diene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclohexa-1_4-diene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cycloocta-1_3_5_7-tetraene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/Z-cycloheptene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cycloocta-1_3_5-triene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclohepta-1_3_5-triene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclohepta-1_3-diene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclohexene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclohepta-1_4-diene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclopentene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclohexa-1_3-diene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/Z-cyclooctene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclopenta-1_3-diene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/cyclohexanol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/propan-2-ol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/ethanol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/but-2-yne-1_4-diol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/propane-1_2_3-triol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/methanol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/2-aminoethanol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/cyclopentanol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/propan-1-ol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alcohols/ethane-1_2-diol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkynes --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkynes/acetylene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkynes/propyne.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/2-methylproprane-2-thiol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/pentane-1-thiol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/butane-1-thiol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/heptane-1-thiol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/proprane-2-thiol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/ethane-1_2-dithiol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/ethanethiol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/proprane-1-thiol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/octane-1-thiol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/hexane-1-thiol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/R_butane-2-thiol.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/thiols/methanethiol.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/picolinamide.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/picolinic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/1H-pyrazole.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/isonicotinic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/benzothiophene.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/furan.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/1H-pyrrole.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/pyridine.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/1H-indole.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/thiophene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/isonicotinamide.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/benzofuran.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/isonicotinic_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/1_2-thiazole.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/benzothiophene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/pyridine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/1H-pyrazole.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/benzofuran.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/picolinamide.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/nicotinic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/1H-pyrrole.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/picolinic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/isonicotinamide.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/nicotinamide.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/1_3-thiazole.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/1_3-oxazole.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/1_2-oxazole.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/diethylether.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/ethylmethylether.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/dibutylether.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/diisopropylether.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/tetrahydropyran.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/dimethylether.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/dipropylether.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/1_4-dioxane.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/di-tert-butylether.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ethers/tetrahydrofuran.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nitriles --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nitriles/isobutyronitrile.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nitriles/propionitrile.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nitriles/1_1_1-trichloroacetonitrile.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nitriles/butyronitrile.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/nitriles/acetonitrile.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/hex-1-ene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-pent-2-ene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/propene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/E-hept-2-ene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/3E-penta-1_3-diene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/hept-1-ene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/E-pent-2-ene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-but-2-ene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/E-hex-3-ene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/oct-1-ene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-oct-3-ene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-oct-4-ene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-hept-3-ene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/E-hept-3-ene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-hex-3-ene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/ethene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/pent-1-ene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/E-but-2-ene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/3Z_3-ethylhepta-1_3-diene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-hex-2-ene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/but-1-ene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/E-oct-2-ene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/E-oct-4-ene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-oct-2-ene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/E-oct-3-ene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/3Z-penta-1_3-diene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/2-methylbut-2-ene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/2-methylbuta-1_3-diene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-hept-2-ene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/alkenes/E-hex-2-ene.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/macrocycles --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/macrocycles/phthalocyanine.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/macrocycles/porphin.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amides --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amides/ethyl_carbamate.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amides/acetamide.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amides/N_N-dimethylformamide.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amides/oxamide.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amides/N_N-dimethylacetamide.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/1_3-oxazole.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/thiophene.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/1_3-thiazole.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ketones +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ketones/methyl_vinyl_ketone.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ketones/acetone.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ketones/butanone.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ketones/p-benzoquinone.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/ketones/cyclohexanone.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/2-aminopropane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/ammonia.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/methylamine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/1H-azepine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/S-sec-butylamine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/dimethylamine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/ethylamine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/triethylenediamine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/diethylamine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/triethylamine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/tert-butylamine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/piperidine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/trimethylamine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/pyrrolidine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/azepane.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/amines/piperazine.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-talose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-threose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-tagatose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-mannose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-allose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-lyxose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/dihydroxyacetone.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-arabinose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-erythrulose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-galactose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-xylulose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-ribose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-ribulose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-glyceraldehyde.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-gulose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-xylose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-idose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-sorbose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-glucose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-erythrose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-fructose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-altrose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-psicose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/L-ascorbic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/L-lactic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/oxalic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/isobutyric_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/2_2_2-trichloroacetic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/D-tartaric_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/L-tartaric_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/propanoic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/butanoic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/acetic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/E-butanoic_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/L-malic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/2_2_2-trifluoroacetic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/formic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/L-lactic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/D-tartaric_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/citric_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/isobutyric_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/D-lactic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/E-butanoic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/2_2_2-trifluoroacetic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/E-butenedioic_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/D-malic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/oxalic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/2_2_2-trichloroacetic_acid.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/2_2-dichloroacetic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/formic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/propanoic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/acetic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/E-butenedioic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/butanoic_acid.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-glucose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-allose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/dihydroxyacetone.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-erythrulose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-gulose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-erythrose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-psicose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-ribose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-talose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-lyxose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-altrose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-fructose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-threose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-sorbose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-tagatose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-idose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-glyceraldehyde.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-mannose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-ribulose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-xylulose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-xylose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-arabinose.cml --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-galactose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/pentanoic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/linoleic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/hexanoic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/linolenic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/stearic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/cervonic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/palmitic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/octanoic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/lauric_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/myristic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/decanoic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/oleic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/fatty_acids/arachidonic_acid.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aldehydes +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aldehydes/acetaldehyde.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/aldehydes/formaldehyde.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-arabinopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-L-xylopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-lyxopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-L-ribopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-sorbopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-psicopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-mannopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-gulopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-xylopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-galactopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-arabinopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-glucopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-lyxopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-ribopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-glucuronopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-galacturonopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-gulopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-galactopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-rhamnopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-L-arabinopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-xylopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-rhamnopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-ribopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-mannopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-ribopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-talopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-allopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-lyxopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-glucopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-fructopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-allopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-arabinopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-tagatopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-galactopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-fucopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-tagatopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-xylopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-L-lyxopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-idopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-rhamnopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-idopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-fucopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-fucopyranose.cml +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-talopyranose.cml -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-lys.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-glu.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-asp.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-ser.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-pyl.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-his.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-phe.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-arg.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-asn.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-leu.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-met.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-trp.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-leu.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-val.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-asp.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-trp.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-pro.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-cys.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-lys.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-gln.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-his.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-arg.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-tyr.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-val.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-sec.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-tyr.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-thr.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-lys.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-gln.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-leu.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-pro.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-asn.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-trp.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-glu.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-arg.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-pro.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-asp.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-met.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-asn.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-his.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-trp.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-ile.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-gln.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-gln.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-ile.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-phe.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-sec.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-cys.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-met.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-ala.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-ser.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-ile.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-phe.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-glu.zmat --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-ala.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-glu.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-thr.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-tyr.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/gly.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-ser.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-thr.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-ala.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-ala.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-lys.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-leu.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-tyr.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-cys.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-phe.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-asp.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-his.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/l-arg.zmat +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/builder/amino/d-ser.zmat -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbonates --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbonates/Na2CO3-Natrite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbonates/Li2CO3-Zabuyelite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbonates/CaMgC2O6-Dolomite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbonates/MgCO3-Magnesite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbonates/CaCO3-Calcite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydroxides --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydroxides/Ni(OH)2-Theophrastite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydroxides/LiOH.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydroxides/Ca(OH)2-Portlandite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydroxides/KOH.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydroxides/Mg(OH)2-Brucite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/SnS-Herzenbergite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/FeS.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/ZnS-Sphalerite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/ZnS-Wurtzite-2H.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/ZnS-Zincblende.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/CdS-Hawleyite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/FeS2-Pyrite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/Bi2S3-Bismuthinite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/CdS-Greenockite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/Sb2S3-Stibnite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/PbS-Galena.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/HgS-Metacinnabar.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates/CaSO4-2(H2O)-Gypsum.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates/CoSO4.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates/CuSO4.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates/PbSO4-Anglesite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates/BaSO4-Barite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates/SrSO4-Celestine.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates/MgSO4.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates/CaSO4-Anhydrite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydrides --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydrides/NaH.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydrides/PdH.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydrides/LiH.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydrides/KH.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbides +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbides/SiC-2H-Moissanite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbides/SiC-Moissanite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbides/W2C.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbides/SiC-3C-beta.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbides/WC.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbides/SiC-6H-alpha.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbides/SiC.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Mg3(O12Si4)H2-Vermiculite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Mn1.854Fe1.656Mg0.537Si0.953O9H4-Guidottiite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Lepidolite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Zn2SiO5H2-Hemimorphite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/AlSi2O6H-Pyrophyllite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Al2Si2O9H4-Kaolinite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Mg4Si6O22.82H13.64-Sepiolite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Mg2Al2SiO9H4-Amesite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Al2Si2O9H4-Dickite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Al2Si2O9H4-Nacrite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Al2Si4O12Ca0.5-Montmorillonite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/FeSi2O6H-Nontronite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Al4KSi2O12-Illite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Fe2.25Cl0.5H2.75-Fougerite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics/BiPd-Sobolevskite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics/Cu2MnAl-Heusler.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics/AuCu-Tetraauricupride.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics/CoFe-Wairauite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics/Au3Cu-Bogdanovite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics/PtBi.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics/(Ni0.5Fe0.5)Pt-Ferronickelplatinum.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics/(Cu0.5Fe0.5)Pt-Tulameenite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics/FePt-Tetraferroplatinum.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/CdO-Monteponite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/NbO2.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SiO2-Stishovite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/MoO3-Molybdite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/TiO2-Anatase.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/PdO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/BaO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Li2O.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/CaO-Lime.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/FeO-Wustite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/WO2.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/YbO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/K2O.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/UO2-Uraninite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SiO2-Cristobalite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Al2O3-Corundum.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SnO2-Cassiterite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SiO2-Quartz-alpha.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/La2O3-LanthanumOxide-A.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/RuO2.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Fe3O4-Magnetite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/In2O3-IndiumOxide.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Fe2O3-Hematite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SrO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/MnO-Manganosite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/In2O3.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/HfO2.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/PbO2-Scrutinyite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/MoO2-Tugarinovite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/CoO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Sc2O3.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/PbO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/MnO2-Pyrolusite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Rb2O.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/(MgAl2)O4-Spinel.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/GeO2.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SiO2-Coesite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Ag2O.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/IrO2.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Cu2O-Cuprite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/CeO2-Cerianite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/UO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/TaO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/NiFe2O4.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/GeO2-Argutite-tetrag.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SnO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/TiO2-Rutile.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/PtO2-beta.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/AgO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Y2O3.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/V2O5-Shcherbinaite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/V2O3-Karelianite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Na2O.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/ZnO-Zincite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/VO2.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/ZrO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/CoFe2O4.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/VO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SmO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/NbO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SiO2-Quartz-beta.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/CuO-Tenorite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Rh2O3.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/ZrO2-Cubic.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Cr2O3-Eskolaite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/GeO2-Argutite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/TiO2-Brookite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/MgO-Periclase.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/NiO-Bunsenite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Er-Erbium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Se-Selenium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Tm-Thulium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Am-Americium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Xe-Xenon.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Th-Thorium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ir-Iridium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Gd-Gadolinium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Mn-Manganese-gamma.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Np-Neptunium-beta.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Fe-Iron-alpha.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Al-Aluminum.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/K-Potassium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/I-Iodine.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ba-Barium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Am-Americium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/In-Indium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Mn-Manganese-delta.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Np-Neptunium-gamma.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Te-Tellurium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ga-Gallium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ta-Tantalum.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ar-Argon.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ce-Cerium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ho-Holmium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/C-Graphite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/I-Iodine.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/B-Boron.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/W-Tungsten.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ca-Calcium-alpha.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Eu-Europium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ac-Actinium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Y-Yttrium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ca-Calcium-beta.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Pt-Platinum.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Sb-Antimony.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/S8-Sulfur-gamma.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Er-Erbium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Sc-Scandium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Hf-Hafnium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Os-Osmium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Rb-Rubidium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Sr-Strontium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ge-Germanium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ti-Titanium-beta.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ac-Actinium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Cl-Chlorine.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Re-Rhenium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Pu-Plutonium-gamma.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/U-Uranium-alpha.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/In-Indium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ag-Silver.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Nd-Neodymium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Pd-Palladium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Pu-Plutonium-alpha.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Xe-Xenon.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ti-Titanium-alpha.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Si-Silicon.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Sm-Samarium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/He-Helium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Cr-Chromium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Tb-Terbium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/C-Lonsdaleite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/N-Nitrogen.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Yb-Ytterbium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/La-Lanthanum.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ba-Barium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Cs-Cesium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Pt-Platinum.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/As-Arsenolamprite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Fe-Iron-beta.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Fe-Iron-delta.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/La-Lanthanum.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Au-Gold.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Rh-Rhodium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Zn-Zinc.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Pd-Palladium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Mg-Magnesium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Cd-Cadmium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Kr-Krypton.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/C-Diamond.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Cu-Copper.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Li-Lithium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ru-Ruthenium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Mn-Manganese-alpha.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Pr-Praseodymium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/U-Uranium-gamma.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/S8-Sulfur-alpha.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ti-Titanium-beta.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Lu-Lutetium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Hf-Hafnium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ca-Calcium-gamma.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Nb-Niobium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Zr-Zirconium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/He-Helium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Br-Bromine.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ta-Tantalum.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Bi-Bismuth.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Mo-Molybdenum.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/As-Arsenic.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ca-Calcium-gamma.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Na-Sodium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Sn-Tin-beta.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Pu-Plutonium-epsilon.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Rb-Rubidium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/P-Phosphorus-black.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Fe-Iron-gamma.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Np-Neptunium-alpha.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Pb-Lead.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ag-Silver.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Cr-Chromium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/S6-Sulfur.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ar-Argon.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Mg-Magnesium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Fe-Iron-beta.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Fe-Iron-alpha.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Al-Aluminum.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/S8-Sulfur-alpha.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ne-Neon.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Cs-Cesium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/P-Phosphorus.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/K-Potassium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ir-Iridium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Tl-Thallium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/U-Uranium-gamma.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ca-Calcium-alpha.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Lu-Lutetium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ti-Titanium-alpha.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/U-Uranium-alpha.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Be-Beryllium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Co-Cobalt.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Mn-Manganese-delta.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ni-Nickel.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Br-Bromine.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Cl-Chlorine.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ne-Neon.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Tm-Thulium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Dy-Dysprosium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/S6-Sulfur.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Bi-Bismuth.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ru-Ruthenium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ge-Germanium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Eu-Europium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Np-Neptunium-beta.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/B-Boron.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ce-Cerium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/S8-Sulfur-beta.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Pu-Plutonium-epsilon.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Zr-Zirconium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Mn-Manganese-alpha.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Fe-Iron-gamma.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/C-Lonsdaleite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Mn-Manganese-gamma.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Cd-Cadmium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/C-Graphite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Yb-Ytterbium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/C-Diamond.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/S8-Sulfur-gamma.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Cu-Copper.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Pr-Praseodymium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Fe-Iron-delta.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Sr-Strontium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Sn-Tin-alpha.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Tl-Thallium.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/V-Vanadium.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbides --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbides/WC.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbides/W2C.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbides/SiC-2H-Moissanite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbides/SiC-6H-alpha.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbides/SiC-3C-beta.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbides/SiC.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbides/SiC-Moissanite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/ice --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice-Ih.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice-VII.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice-IV.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice-VI.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice-III.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice-II.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Np-Neptunium-alpha.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Zn-Zinc.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Y-Yttrium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/W-Tungsten.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Te-Tellurium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Sn-Tin-beta.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Li-Lithium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Nd-Neodymium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Gd-Gadolinium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Sb-Antimony.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Si-Silicon.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Sm-Samarium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Pb-Lead.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ni-Nickel.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Tb-Terbium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Sc-Scandium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Na-Sodium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ho-Holmium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Rh-Rhodium.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Ca-Calcium-beta.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Kr-Krypton.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Pu-Plutonium-gamma.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/N-Nitrogen.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/elements/Co-Cobalt.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/silicates +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/silicates/Be3Al2(SiO3)6-Beryl.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/arsenides +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/arsenides/AlAs.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/arsenides/Co.87Fe.11Ni.13As3-Skutterudite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/arsenides/NiAs-Nickeline.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/arsenides/BAs.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/arsenides/InAs.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/arsenides/GaAs.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/arsenides/CoAs3-Skutterudite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates/MgSO4.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates/CaSO4-Anhydrite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates/PbSO4-Anglesite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates/BaSO4-Barite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates/CuSO4.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates/CoSO4.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates/CaSO4-2(H2O)-Gypsum.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfates/SrSO4-Celestine.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/FeS.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/HgS-Metacinnabar.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/ZnS-Sphalerite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/PbS-Galena.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/Bi2S3-Bismuthinite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/CdS-Greenockite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/Sb2S3-Stibnite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/FeS2-Pyrite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/SnS-Herzenbergite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/CdS-Hawleyite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/ZnS-Zincblende.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/sulfides/ZnS-Wurtzite-2H.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/titanates --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/titanates/Mg2TiO4-Qandilite-cubic.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/titanates/SrTiO3-Tausonite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/titanates/CaTiO3-Perovskite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/titanates/Mg2TiO4-Qandilite-tetrag.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/titanates/Mg2TiO4-Qandilite-cubic.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/titanates/BaTiO3.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/titanates/CaTiO3-Perovskite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/titanates/SrTiO3-Tausonite.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/titanates/MgTiO3.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/Pb1Ti0.35Zr0.65O3-PZT-rhomb.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/Pb1Ti0.35Zr0.65O3-PZT-cub.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/CaC2O6.375H6-Oxalate-Weddellite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/C10H10Fe-Ferrocene.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/YBa2Cu3O6.9-YBCO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/(NH4)MgPO4-6(H2O)-Struvite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/LaAlO3.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/FeMnO3-Bixbyite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/Ca2C4O10H2.57-Oxalate-Whewellite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/LiNbO3-LithiumNiobate.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/H3N-Ammonia.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/antimonides -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/antimonides/InSb.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/antimonides/AlSb.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/antimonides/GaSb.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/CrCl2.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/CsCl.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/KBr.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/AlCl3.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/HgCl-Calomel.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/AlNa3F6-Cryolite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/CdCl2.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/KCl-Sylvite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/AgCl-Chlorargyrite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/FeCl3-Molysite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/CdI2.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/NaCl-Halite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/CrCl3.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/AgBr-Bromargyrite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/CaF2-Fluorite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/PbFCl-Matlockite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics/BiPd-Sobolevskite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics/Au3Cu-Bogdanovite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics/AuCu-Tetraauricupride.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics/Cu2MnAl-Heusler.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics/FePt-Tetraferroplatinum.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics/(Ni0.5Fe0.5)Pt-Ferronickelplatinum.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics/(Cu0.5Fe0.5)Pt-Tulameenite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics/PtBi.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/intermetallics/CoFe-Wairauite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/telurides --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/telurides/ZnTe.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/telurides/CdTe.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/telurides/PbTe-Altaite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/telurides/BiTe.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/telurides/Bi2Te3.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/selenides --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/selenides/ZnSe.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/selenides/Sb2Se3-Antimonselite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/selenides/HgSe-Tiemannite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/selenides/CdSe-Cadmoselite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/selenides/BiSe.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/selenides/PbSe-Clausthalite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/selenides/Bi2Se3.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/antimonides/AlSb.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/UEI.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CHI.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ITW.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/EMT.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AEL.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/OBW.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AET.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MEI.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/NPO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/NAT.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/PON.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/RON.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/NSI.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LTL.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CLO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/STI.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/IWV.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ITV.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/VFI.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/EUO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/USI.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/IWW.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AFR.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MFS.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/UTL.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/EZT.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ITH.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/GIS.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ERI.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/STF.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ZSM-5.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LAU.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ETR.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/TSC.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/EPI.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/PHI.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/APC.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SFN.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/IWS.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/BOG.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AFX.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/BEC.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AST.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/DOH.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ITE.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CON.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SGT.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AFT.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/JRY.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/RWY.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/VSV.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MVY.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/THO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/USI.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MTT.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/DDR.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MAR.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LEV.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MSO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AFI.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AFO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AEI.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/IRR.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SOF.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/NON.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CAN.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/RSN.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SAT.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SFF.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LTF.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/UOZ.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ATV.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ABW.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CFI.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MTF.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/RTH.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/PON.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AEN.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SAV.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/TER.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/GIU.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MFS.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SBE.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ATO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AFS.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SAF.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SVR.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/PAR.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AWW.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MOR.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/RWR.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AFG.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/BEA.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/OSO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/OFF.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/EON.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SFN.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/BRE.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/APD.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/PAU.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/BOF.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SFS.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AWO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/BEA.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/VNI.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/UOS.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/IFR.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/STW.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MTN.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/FER.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CGS.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MWW.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/EDI.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CAS.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/IMF.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/RTH.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SZR.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AFS.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/OSI.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MEP.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/TOL.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/UWY.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LIT.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SSY.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/EPI.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AHT.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/TSC.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LAU.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/HEU.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/RTE.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AWW.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/IHW.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/OBW.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/EAB.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/IWW.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/VFI.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/EMT.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AEL.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SAS.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ITV.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ASV.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/STI.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/IWR.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/FAU.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MER.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/OFF.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/TON.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/PAR.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MSO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/OWE.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MEL.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MSE.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CAN.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/STO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/IMF.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/OSI.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/UOZ.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LOV.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/NAB.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/APC.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AEN.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/FAR.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SOS.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MON.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AFY.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/KFI.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ITR.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/STW.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/BCT.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/EZT.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/WEI.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SOD.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ATO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CZP.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MTW.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/NPO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ZON.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ACO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/GON.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/DON.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LIO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/STO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MVY.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/BRE.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ANA.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MFI.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/RWR.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/THO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ATN.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ITH.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/BOG.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ISV.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/IWR.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/EDI.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/GME.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AFI.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/WEI.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/GIU.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AEI.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LTF.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/GOO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/NAB.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SAT.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CFI.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SBT.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CGS.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/OWE.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/FAR.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/TOL.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SFE.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MRE.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SSF.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SFO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SSY.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SIV.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ACO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CHA.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/WEN.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CHI.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MFI.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/BEC.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/BCT.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ATT.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/UTL.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CDO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AFY.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SFF.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AHT.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/RUT.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/UFI.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ANA.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/NES.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ITR.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/DFT.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/VNI.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LOS.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/RSN.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CGF.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LTA.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MEI.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/RRO.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/FRA.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/DFO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/STT.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/RHO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MTN.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MTW.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/EON.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/IWV.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SZR.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SFG.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ZON.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LTA.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AET.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SAO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/RRO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MAR.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/IHW.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/TER.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CHA.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ABW.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/JBW.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LTN.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/DFT.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/NES.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SFO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SBN.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AST.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ATS.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MOR.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SAV.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/GIS.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MTT.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MTF.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MRE.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SAF.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/YUG.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ISV.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/STT.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/UEI.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AWO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AFT.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SBS.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MAZ.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SFS.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/NAT.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ATN.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/DAC.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/VET.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SFE.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/BPH.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/BIK.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/GON.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ZSM-5.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/FAU.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/PAU.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ERI.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MOZ.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/APD.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ATT.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/PUN.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/EUO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/NON.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CZP.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/DFO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/RHO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/YUG.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SFH.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CGF.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MEP.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/UWY.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/NSI.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/UFI.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/RON.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/KFI.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CLO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/BSV.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MOZ.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ESV.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SBS.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/GOO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AFG.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AFO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/VSV.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/PHI.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LEV.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ASV.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/WEN.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SOS.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LIO.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/BPH.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SGT.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/VET.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MON.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/TUN.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/FER.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/DDR.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/EAB.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/RWY.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MER.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SAS.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/BSV.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/IFR.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LOS.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/IRR.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/IWS.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SVR.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/JRY.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/UOS.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/BIK.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CAS.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ATV.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/DOH.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AFN.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SBE.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/JBW.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ETR.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MEL.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/MSE.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SSF.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/STF.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CDO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/Pb1Ti0.35Zr0.65O3-PZT-rhomb.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/C10H10Fe-Ferrocene.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/Ca2C4O10H2.57-Oxalate-Whewellite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/FeMnO3-Bixbyite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/CaC2O6.375H6-Oxalate-Weddellite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/LiNbO3-LithiumNiobate.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/(NH4)MgPO4-6(H2O)-Struvite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/LaAlO3.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/YBa2Cu3O6.9-YBCO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/H3N-Ammonia.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/other/Pb1Ti0.35Zr0.65O3-PZT-cub.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/arsenides --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/arsenides/InAs.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/arsenides/BAs.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/arsenides/AlAs.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/arsenides/NiAs-Nickeline.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/arsenides/GaAs.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/arsenides/Co.87Fe.11Ni.13As3-Skutterudite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/arsenides/CoAs3-Skutterudite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ITW.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/RTE.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/CON.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/SBN.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/ITE.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/AFR.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LIT.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/zeolites/LTL.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/nitrides -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/nitrides/Si3N4-beta.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/nitrides/GaN.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/nitrides/BN.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/nitrides/AlN.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/nitrides/InN.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/nitrides/BN.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/silicates --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/silicates/Be3Al2(SiO3)6-Beryl.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/CaO-Lime.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/YbO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/TiO2-Brookite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/TaO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/CdO-Monteponite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/GeO2.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/GeO2-Argutite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/(MgAl2)O4-Spinel.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/MoO3-Molybdite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/GeO2-Argutite-tetrag.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/In2O3.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/NbO2.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/PbO2-Scrutinyite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Ag2O.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/CoO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SiO2-Quartz-alpha.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/ZrO2-Cubic.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SnO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/MnO-Manganosite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Rh2O3.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Cr2O3-Eskolaite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/BaO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/PbO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Cu2O-Cuprite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Fe2O3-Hematite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/In2O3-IndiumOxide.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/VO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/VO2.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/AgO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/CoFe2O4.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Li2O.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/V2O3-Karelianite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/NiFe2O4.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/HfO2.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/NbO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/CeO2-Cerianite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/MoO2-Tugarinovite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SnO2-Cassiterite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Fe3O4-Magnetite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/PtO2-beta.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SmO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Y2O3.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SiO2-Cristobalite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/TiO2-Anatase.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/NiO-Bunsenite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Al2O3-Corundum.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/FeO-Wustite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Sc2O3.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/K2O.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/WO2.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/IrO2.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SrO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Na2O.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/Rb2O.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SiO2-Stishovite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/TiO2-Rutile.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/UO2-Uraninite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SiO2-Quartz-beta.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/MgO-Periclase.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/SiO2-Coesite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/La2O3-LanthanumOxide-A.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/MnO2-Pyrolusite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/ZrO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/PdO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/CuO-Tenorite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/UO.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/V2O5-Shcherbinaite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/RuO2.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/oxides/ZnO-Zincite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/KCl-Sylvite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/AlNa3F6-Cryolite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/PbFCl-Matlockite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/HgCl-Calomel.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/CdCl2.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/CdI2.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/CrCl3.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/AgBr-Bromargyrite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/AlCl3.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/CaF2-Fluorite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/CrCl2.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/NaCl-Halite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/AgCl-Chlorargyrite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/FeCl3-Molysite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/CsCl.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/halides/KBr.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbonates +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbonates/Li2CO3-Zabuyelite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbonates/MgCO3-Magnesite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbonates/Na2CO3-Natrite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbonates/CaCO3-Calcite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/carbonates/CaMgC2O6-Dolomite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/telurides +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/telurides/CdTe.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/telurides/ZnTe.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/telurides/PbTe-Altaite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/telurides/BiTe.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/telurides/Bi2Te3.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/selenides +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/selenides/PbSe-Clausthalite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/selenides/Sb2Se3-Antimonselite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/selenides/CdSe-Cadmoselite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/selenides/HgSe-Tiemannite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/selenides/BiSe.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/selenides/Bi2Se3.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/selenides/ZnSe.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydroxides +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydroxides/KOH.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydroxides/LiOH.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydroxides/Mg(OH)2-Brucite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydroxides/Ni(OH)2-Theophrastite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydroxides/Ca(OH)2-Portlandite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/ice +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice-Ih.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice-II.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice-III.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice-VII.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice-IV.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice-VI.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/phosphides --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/phosphides/AlP.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/phosphides/InP.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/phosphides/GaP.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/phosphides/AlP.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/phosphides/BP.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Mg4Si6O22.82H13.64-Sepiolite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Al2Si4O12Ca0.5-Montmorillonite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Zn2SiO5H2-Hemimorphite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Al2Si2O9H4-Dickite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Al4KSi2O12-Illite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Al2Si2O9H4-Kaolinite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Mg3(O12Si4)H2-Vermiculite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Lepidolite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Mg2Al2SiO9H4-Amesite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Al2Si2O9H4-Nacrite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/AlSi2O6H-Pyrophyllite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Fe2.25Cl0.5H2.75-Fougerite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/Mn1.854Fe1.656Mg0.537Si0.953O9H4-Guidottiite.cif --- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/clays/FeSi2O6H-Nontronite.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydrides +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydrides/NaH.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydrides/KH.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydrides/PdH.cif +-- Installing: /build/avogadro-1.2.0/debian/tmp/usr/share/avogadro/crystals/hydrides/LiH.cif -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/lib/pkgconfig/avogadro.pc -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/bin/avopkg -- Installing: /build/avogadro-1.2.0/debian/tmp/usr/features/avogadro.prf @@ -14592,12 +14626,12 @@ dh_install --list-missing dh_install: Please use dh_missing --list-missing/--fail-missing instead dh_install: This feature will be removed in compat 12. +dh_missing: usr/share/libavogadro/extensionScripts/example.py exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/libmsym.a exists in debian/tmp but is not installed to anywhere -dh_missing: usr/lib/cmake/libmsym/libmsymTargets-none.cmake exists in debian/tmp but is not installed to anywhere +dh_missing: usr/lib/cmake/libmsym/libmsymConfigVersion.cmake exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/cmake/libmsym/libmsymConfig.cmake exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/cmake/libmsym/libmsymTargets.cmake exists in debian/tmp but is not installed to anywhere -dh_missing: usr/lib/cmake/libmsym/libmsymConfigVersion.cmake exists in debian/tmp but is not installed to anywhere -dh_missing: usr/share/libavogadro/extensionScripts/example.py exists in debian/tmp but is not installed to anywhere +dh_missing: usr/lib/cmake/libmsym/libmsymTargets-none.cmake exists in debian/tmp but is not installed to anywhere The following debhelper tools have reported what they installed (with files per package) * dh_install: avogadro (6), avogadro-data (4), libavogadro-dev (11), libavogadro1 (8), python-avogadro (2) If the missing files are installed by another tool, please file a bug against it. @@ -14631,14 +14665,14 @@ dh_strip dh_makeshlibs dh_shlibdeps -dpkg-shlibdeps: warning: debian/avogadro/usr/bin/avogadro contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin dpkg-shlibdeps: warning: debian/avogadro/usr/bin/qube contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin +dpkg-shlibdeps: warning: debian/avogadro/usr/bin/avogadro contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libavogadro1/usr/lib/libavogadro_OpenQube.so.0.1.0 found in none of the libraries dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libavogadro1/usr/lib/libavogadro.so.1.2.0 found in none of the libraries dh_installdeb dh_gencontrol -dpkg-gencontrol: warning: package python-avogadro: substitution variable ${python:Versions} unused, but is defined dpkg-gencontrol: warning: package avogadro: substitution variable ${sip:Depends} unused, but is defined +dpkg-gencontrol: warning: package python-avogadro: substitution variable ${python:Versions} unused, but is defined dpkg-gencontrol: warning: package libavogadro1: substitution variable ${sip:Depends} unused, but is defined dpkg-gencontrol: warning: package python-avogadro: substitution variable ${python:Versions} unused, but is defined dpkg-gencontrol: warning: package avogadro: substitution variable ${sip:Depends} unused, but is defined @@ -14647,13 +14681,13 @@ dpkg-gencontrol: warning: package avogadro-data: substitution variable ${sip:Depends} unused, but is defined dh_md5sums dh_builddeb -dpkg-deb: building package 'libavogadro1' in '../libavogadro1_1.2.0-4_armhf.deb'. dpkg-deb: building package 'python-avogadro' in '../python-avogadro_1.2.0-4_armhf.deb'. +dpkg-deb: building package 'libavogadro1-dbgsym' in '../libavogadro1-dbgsym_1.2.0-4_armhf.deb'. +dpkg-deb: building package 'avogadro-data' in '../avogadro-data_1.2.0-4_all.deb'. dpkg-deb: building package 'avogadro' in '../avogadro_1.2.0-4_armhf.deb'. dpkg-deb: building package 'python-avogadro-dbgsym' in '../python-avogadro-dbgsym_1.2.0-4_armhf.deb'. -dpkg-deb: building package 'libavogadro1-dbgsym' in '../libavogadro1-dbgsym_1.2.0-4_armhf.deb'. +dpkg-deb: building package 'libavogadro1' in '../libavogadro1_1.2.0-4_armhf.deb'. dpkg-deb: building package 'avogadro-dbgsym' in '../avogadro-dbgsym_1.2.0-4_armhf.deb'. -dpkg-deb: building package 'avogadro-data' in '../avogadro-data_1.2.0-4_all.deb'. dpkg-deb: building package 'libavogadro-dev' in '../libavogadro-dev_1.2.0-4_armhf.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../avogadro_1.2.0-4_armhf.changes @@ -14661,12 +14695,14 @@ dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/10471/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/10471/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/19330 and its subdirectories -I: Current time: Tue Jun 16 14:22:46 -12 2020 -I: pbuilder-time-stamp: 1592360566 +I: removing directory /srv/workspace/pbuilder/10471 and its subdirectories +I: Current time: Wed Jun 17 17:33:38 +14 2020 +I: pbuilder-time-stamp: 1592364818