Diff of the two buildlogs: -- --- b1/build.log 2021-02-08 19:41:29.772218091 +0000 +++ b2/build.log 2021-02-08 23:19:55.793829778 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Mar 13 08:16:38 -12 2022 -I: pbuilder-time-stamp: 1647202598 +I: Current time: Tue Feb 9 09:42:09 +14 2021 +I: pbuilder-time-stamp: 1612813329 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/var/lib/jenkins/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Sun Feb 17 06:12:37 2019 -12 +gpgv: Signature made Mon Feb 18 08:12:37 2019 +14 gpgv: using RSA key 843E5FA61E6063389876D2E5EE4AFD69EC65108F gpgv: issuer "nbreen@debian.org" gpgv: Can't check signature: No public key @@ -34,136 +34,170 @@ dpkg-source: info: applying local-mathjax.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2947/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/5254/tmp/hooks/D01_modify_environment starting +debug: Running on codethink10-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/5254/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/5254/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.0.3(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' - DISTRIBUTION='' - HOME='/var/lib/jenkins' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/var/lib/jenkins + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2947' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=5254 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.T0KpgIs1jP/pbuilderrc_zTfA --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.T0KpgIs1jP/b1 --logfile b1/build.log gromacs_2019.1-1.dsc' - SUDO_GID='117' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - USERNAME='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.16:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.T0KpgIs1jP/pbuilderrc_v43p --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.T0KpgIs1jP/b2 --logfile b2/build.log gromacs_2019.1-1.dsc' + SUDO_GID=117 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + USERNAME=root + _='I: set' + http_proxy=http://192.168.101.16:3128 I: uname -a - Linux codethink13-arm64 4.15.0-135-generic #139-Ubuntu SMP Mon Jan 18 17:40:29 UTC 2021 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-135-generic #139-Ubuntu SMP Mon Jan 18 17:40:29 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 4928 - -rwxr-xr-x 1 root root 1216928 Apr 17 2019 bash - -rwxr-xr-x 3 root root 34808 Jul 10 2019 bunzip2 - -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzcat - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep - -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzip2 - -rwxr-xr-x 1 root root 14264 Jul 10 2019 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore - -rwxr-xr-x 1 root root 35576 Feb 28 2019 cat - -rwxr-xr-x 1 root root 60256 Feb 28 2019 chgrp - -rwxr-xr-x 1 root root 56096 Feb 28 2019 chmod - -rwxr-xr-x 1 root root 64368 Feb 28 2019 chown - -rwxr-xr-x 1 root root 134632 Feb 28 2019 cp - -rwxr-xr-x 1 root root 129536 Jan 17 2019 dash - -rwxr-xr-x 1 root root 97136 Feb 28 2019 date - -rwxr-xr-x 1 root root 76736 Feb 28 2019 dd - -rwxr-xr-x 1 root root 93752 Feb 28 2019 df - -rwxr-xr-x 1 root root 138848 Feb 28 2019 dir - -rwxr-xr-x 1 root root 75984 Jan 9 2019 dmesg - lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname - -rwxr-xr-x 1 root root 31368 Feb 28 2019 echo - -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep - -rwxr-xr-x 1 root root 27256 Feb 28 2019 false - -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep - -rwxr-xr-x 1 root root 68792 Jan 9 2019 findmnt - -rwsr-xr-x 1 root root 34824 Apr 22 2020 fusermount - -rwxr-xr-x 1 root root 174304 Jan 7 2019 grep - -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip - -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe - -rwxr-xr-x 1 root root 89656 Jan 5 2019 gzip - -rwxr-xr-x 1 root root 18440 Sep 26 2018 hostname - -rwxr-xr-x 1 root root 64472 Feb 28 2019 ln - -rwxr-xr-x 1 root root 52544 Jul 26 2018 login - -rwxr-xr-x 1 root root 138848 Feb 28 2019 ls - -rwxr-xr-x 1 root root 108552 Jan 9 2019 lsblk - -rwxr-xr-x 1 root root 76840 Feb 28 2019 mkdir - -rwxr-xr-x 1 root root 64480 Feb 28 2019 mknod - -rwxr-xr-x 1 root root 39736 Feb 28 2019 mktemp - -rwxr-xr-x 1 root root 38840 Jan 9 2019 more - -rwsr-xr-x 1 root root 47112 Jan 9 2019 mount - -rwxr-xr-x 1 root root 14344 Jan 9 2019 mountpoint - -rwxr-xr-x 1 root root 138736 Feb 28 2019 mv - lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 35560 Feb 28 2019 pwd - lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash - -rwxr-xr-x 1 root root 43712 Feb 28 2019 readlink - -rwxr-xr-x 1 root root 68440 Feb 28 2019 rm - -rwxr-xr-x 1 root root 39624 Feb 28 2019 rmdir - -rwxr-xr-x 1 root root 19144 Jan 21 2019 run-parts - -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Mar 12 02:48 sh -> dash - -rwxr-xr-x 1 root root 31384 Feb 28 2019 sleep - -rwxr-xr-x 1 root root 72480 Feb 28 2019 stty - -rwsr-xr-x 1 root root 59424 Jan 9 2019 su - -rwxr-xr-x 1 root root 31416 Feb 28 2019 sync - -rwxr-xr-x 1 root root 449416 Apr 23 2019 tar - -rwxr-xr-x 1 root root 10560 Jan 21 2019 tempfile - -rwxr-xr-x 1 root root 88968 Feb 28 2019 touch - -rwxr-xr-x 1 root root 27256 Feb 28 2019 true - -rwxr-xr-x 1 root root 14264 Apr 22 2020 ulockmgr_server - -rwsr-xr-x 1 root root 30728 Jan 9 2019 umount - -rwxr-xr-x 1 root root 31384 Feb 28 2019 uname - -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress - -rwxr-xr-x 1 root root 138848 Feb 28 2019 vdir - -rwxr-xr-x 1 root root 34824 Jan 9 2019 wdctl - -rwxr-xr-x 1 root root 946 Jan 21 2019 which - lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat - -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp - -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff - -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep - -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep - -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce - -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep - -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless - -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore - -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew -I: user script /srv/workspace/pbuilder/2947/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1216928 Apr 18 2019 bash + -rwxr-xr-x 3 root root 34808 Jul 11 2019 bunzip2 + -rwxr-xr-x 3 root root 34808 Jul 11 2019 bzcat + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep + -rwxr-xr-x 3 root root 34808 Jul 11 2019 bzip2 + -rwxr-xr-x 1 root root 14264 Jul 11 2019 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore + -rwxr-xr-x 1 root root 35576 Mar 1 2019 cat + -rwxr-xr-x 1 root root 60256 Mar 1 2019 chgrp + -rwxr-xr-x 1 root root 56096 Mar 1 2019 chmod + -rwxr-xr-x 1 root root 64368 Mar 1 2019 chown + -rwxr-xr-x 1 root root 134632 Mar 1 2019 cp + -rwxr-xr-x 1 root root 129536 Jan 18 2019 dash + -rwxr-xr-x 1 root root 97136 Mar 1 2019 date + -rwxr-xr-x 1 root root 76736 Mar 1 2019 dd + -rwxr-xr-x 1 root root 93752 Mar 1 2019 df + -rwxr-xr-x 1 root root 138848 Mar 1 2019 dir + -rwxr-xr-x 1 root root 75984 Jan 10 2019 dmesg + lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname + -rwxr-xr-x 1 root root 31368 Mar 1 2019 echo + -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep + -rwxr-xr-x 1 root root 27256 Mar 1 2019 false + -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep + -rwxr-xr-x 1 root root 68792 Jan 10 2019 findmnt + -rwsr-xr-x 1 root root 34824 Apr 23 2020 fusermount + -rwxr-xr-x 1 root root 174304 Jan 8 2019 grep + -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip + -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe + -rwxr-xr-x 1 root root 89656 Jan 6 2019 gzip + -rwxr-xr-x 1 root root 18440 Sep 27 2018 hostname + -rwxr-xr-x 1 root root 64472 Mar 1 2019 ln + -rwxr-xr-x 1 root root 52544 Jul 27 2018 login + -rwxr-xr-x 1 root root 138848 Mar 1 2019 ls + -rwxr-xr-x 1 root root 108552 Jan 10 2019 lsblk + -rwxr-xr-x 1 root root 76840 Mar 1 2019 mkdir + -rwxr-xr-x 1 root root 64480 Mar 1 2019 mknod + -rwxr-xr-x 1 root root 39736 Mar 1 2019 mktemp + -rwxr-xr-x 1 root root 38840 Jan 10 2019 more + -rwsr-xr-x 1 root root 47112 Jan 10 2019 mount + -rwxr-xr-x 1 root root 14344 Jan 10 2019 mountpoint + -rwxr-xr-x 1 root root 138736 Mar 1 2019 mv + lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 35560 Mar 1 2019 pwd + lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash + -rwxr-xr-x 1 root root 43712 Mar 1 2019 readlink + -rwxr-xr-x 1 root root 68440 Mar 1 2019 rm + -rwxr-xr-x 1 root root 39624 Mar 1 2019 rmdir + -rwxr-xr-x 1 root root 19144 Jan 22 2019 run-parts + -rwxr-xr-x 1 root root 114016 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Feb 9 09:42 sh -> bash + lrwxrwxrwx 1 root root 4 Feb 7 22:26 sh.distrib -> dash + -rwxr-xr-x 1 root root 31384 Mar 1 2019 sleep + -rwxr-xr-x 1 root root 72480 Mar 1 2019 stty + -rwsr-xr-x 1 root root 59424 Jan 10 2019 su + -rwxr-xr-x 1 root root 31416 Mar 1 2019 sync + -rwxr-xr-x 1 root root 449416 Apr 24 2019 tar + -rwxr-xr-x 1 root root 10560 Jan 22 2019 tempfile + -rwxr-xr-x 1 root root 88968 Mar 1 2019 touch + -rwxr-xr-x 1 root root 27256 Mar 1 2019 true + -rwxr-xr-x 1 root root 14264 Apr 23 2020 ulockmgr_server + -rwsr-xr-x 1 root root 30728 Jan 10 2019 umount + -rwxr-xr-x 1 root root 31384 Mar 1 2019 uname + -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress + -rwxr-xr-x 1 root root 138848 Mar 1 2019 vdir + -rwxr-xr-x 1 root root 34824 Jan 10 2019 wdctl + -rwxr-xr-x 1 root root 946 Jan 22 2019 which + lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat + -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp + -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff + -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep + -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep + -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce + -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep + -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless + -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore + -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew +I: user script /srv/workspace/pbuilder/5254/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -509,7 +543,7 @@ Get: 262 http://deb.debian.org/debian buster/main arm64 texlive-pictures all 2018.20190227-2 [8201 kB] Get: 263 http://deb.debian.org/debian buster/main arm64 texlive-latex-extra all 2018.20190227-2 [12.3 MB] Get: 264 http://deb.debian.org/debian buster/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-1 [210 kB] -Fetched 200 MB in 13s (15.5 MB/s) +Fetched 200 MB in 31s (6375 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19168 files and directories currently installed.) @@ -1666,7 +1700,8 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/gromacs-2019.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../gromacs_2019.1-1_source.changes +hostname: Temporary failure in name resolution +I: Running cd /build/gromacs-2019.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../gromacs_2019.1-1_source.changes dpkg-buildpackage: info: source package gromacs dpkg-buildpackage: info: source version 2019.1-1 dpkg-buildpackage: info: source distribution unstable @@ -3139,24 +3174,24 @@ /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/gromacs-2019.1/build/basic' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend -make[3]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs /build/gromacs-2019.1/build/basic/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend -make[3]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs /build/gromacs-2019.1/build/basic/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/basic' +cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs /build/gromacs-2019.1/build/basic/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs /build/gromacs-2019.1/build/basic/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs /build/gromacs-2019.1/build/basic/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/programs /build/gromacs-2019.1/build/basic/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend +/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/programs /build/gromacs-2019.1/build/basic/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend +make[3]: Entering directory '/build/gromacs-2019.1/build/basic' +cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs /build/gromacs-2019.1/build/basic/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake --color= Scanning dependencies of target lmfit_objlib @@ -3164,167 +3199,155 @@ /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/gromacs-2019.1/src/external/lmfit/lmmin.cpp +Scanning dependencies of target mdrun_objlib Scanning dependencies of target view_objlib make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build Scanning dependencies of target tng_io_obj -make[3]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/3dview.cpp.o -c /build/gromacs-2019.1/src/programs/view/3dview.cpp make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build -cd /build/gromacs-2019.1/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/buttons.cpp.o -c /build/gromacs-2019.1/src/programs/view/buttons.cpp -Scanning dependencies of target mdrun_objlib -make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build -make[3]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/bwlzh.c make[3]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/mdrun.cpp Scanning dependencies of target libgromacs_external +make[3]: Entering directory '/build/gromacs-2019.1/build/basic' +cd /build/gromacs-2019.1/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/3dview.cpp.o -c /build/gromacs-2019.1/src/programs/view/3dview.cpp make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' -Scanning dependencies of target mdrun_test_objlib -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build +cd /build/gromacs-2019.1/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/buttons.cpp.o -c /build/gromacs-2019.1/src/programs/view/buttons.cpp make[3]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/eigensolver.cpp +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build +Scanning dependencies of target mdrun_test_objlib make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' +cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/bwlzh.c /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/energyreader.cpp +make[3]: Entering directory '/build/gromacs-2019.1/build/basic' +cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/eigensolver.cpp Scanning dependencies of target libgromacs_generated make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp -cd /build/gromacs-2019.1/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/dialogs.cpp.o -c /build/gromacs-2019.1/src/programs/view/dialogs.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/gmx_arpack.cpp +cd /build/gromacs-2019.1/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/dialogs.cpp.o -c /build/gromacs-2019.1/src/programs/view/dialogs.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/bwt.c cd /build/gromacs-2019.1/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/fgrid.cpp.o -c /build/gromacs-2019.1/src/programs/view/fgrid.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/coder.c cd /build/gromacs-2019.1/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/filter.cpp.o -c /build/gromacs-2019.1/src/programs/view/filter.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/coder.c cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 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-Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/popup.cpp.o -c /build/gromacs-2019.1/src/programs/view/popup.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ 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CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c -cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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/build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/warnmalloc.c +cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/widemuldiv.c +cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/moduletest.cpp make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' [ 2%] Built target view_objlib -cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/trajectorycomparison.cpp +cd 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/build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/xtc2.c +cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o 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/build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/matrix.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/sparsematrix.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/type.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/type.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/scan.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/scan.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/numa_malloc.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/numa_malloc.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/once.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/once.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/numa_malloc.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/numa_malloc.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/once.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/once.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp -/build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c: In function 'tng_time_get_str': -/build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c:15188:24: warning: '%02d' directive output may be truncated writing between 2 and 11 bytes into a region of size between 0 and 16 [-Wformat-truncation=] - "%4d-%02d-%02d %02d:%02d:%02d", - ^~~~ -In file included from /usr/include/stdio.h:873, - from /build/gromacs-2019.1/src/external/tng_io/include/tng/tng_io.h:308, - from /build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c:20: -/usr/include/aarch64-linux-gnu/bits/stdio2.h:67:10: note: '__builtin___snprintf_chk' output between 20 and 72 bytes into a destination of size 24 - return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp @@ -3332,17 +3355,25 @@ cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp -make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 2%] Built target mdrun_test_objlib cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp -make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 4%] Built target tng_io_obj cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp +/build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c: In function 'tng_time_get_str': +/build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c:15188:24: warning: '%02d' directive output may be truncated writing between 2 and 11 bytes into a region of size between 0 and 16 [-Wformat-truncation=] + "%4d-%02d-%02d %02d:%02d:%02d", + ^~~~ +In file included from /usr/include/stdio.h:873, + from /build/gromacs-2019.1/src/external/tng_io/include/tng/tng_io.h:308, + from /build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c:20: +/usr/include/aarch64-linux-gnu/bits/stdio2.h:67:10: note: '__builtin___snprintf_chk' output between 20 and 72 bytes into a destination of size 24 + return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp @@ -3350,18 +3381,22 @@ cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp +make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' +[ 4%] Built target tng_io_obj cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' [ 8%] Built target libgromacs_external +cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp +make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp +[ 8%] Built target mdrun_test_objlib cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp @@ -4189,17 +4224,17 @@ make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' [ 98%] Built target libgromacs /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend -/usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/share/template /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/share/template /build/gromacs-2019.1/build/basic/share/template/CMakeFiles/template.dir/DependInfo.cmake --color= +/usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/programs /build/gromacs-2019.1/build/basic/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= Scanning dependencies of target template make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build -Scanning dependencies of target gmx make[3]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/share/template && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/template.dir/template.cpp.o -c /build/gromacs-2019.1/share/template/template.cpp +Scanning dependencies of target gmx make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/basic' @@ -4223,13 +4258,15 @@ /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs /build/gromacs-2019.1/build/basic-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs /build/gromacs-2019.1/build/basic-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend +make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' +cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs /build/gromacs-2019.1/build/basic-dp/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs /build/gromacs-2019.1/build/basic-dp/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= @@ -4237,8 +4274,6 @@ make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/programs /build/gromacs-2019.1/build/basic-dp/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs /build/gromacs-2019.1/build/basic-dp/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/programs /build/gromacs-2019.1/build/basic-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' @@ -4249,30 +4284,30 @@ make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/gromacs-2019.1/src/external/lmfit/lmmin.cpp Scanning dependencies of target mdrun_objlib -Scanning dependencies of target tng_io_obj make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +Scanning dependencies of target tng_io_obj make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' +cd /build/gromacs-2019.1/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/mdrun.cpp make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/bwlzh.c cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/bwt.c -make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/mdrun.cpp Scanning dependencies of target mdrun_test_objlib make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build -Scanning dependencies of target libgromacs_external -make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/energyreader.cpp Scanning dependencies of target view_objlib -make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/eigensolver.cpp +Scanning dependencies of target libgromacs_external +make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/eigensolver.cpp +make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/3dview.cpp.o -c /build/gromacs-2019.1/src/programs/view/3dview.cpp Scanning dependencies of target libgromacs_generated make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' @@ -4280,20 +4315,20 @@ make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/coder.c -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/gmx_arpack.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/buttons.cpp.o -c /build/gromacs-2019.1/src/programs/view/buttons.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/dict.c cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/fixpoint.c +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/gmx_arpack.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/huffman.c +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/buttons.cpp.o -c /build/gromacs-2019.1/src/programs/view/buttons.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/huffmem.c cd /build/gromacs-2019.1/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/dialogs.cpp.o -c /build/gromacs-2019.1/src/programs/view/dialogs.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/lz77.c cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/merge_sort.c -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/mtf.c make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' [ 1%] Built target mdrun_objlib +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/mtf.c cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/rle.c cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/tng_compress.c cd /build/gromacs-2019.1/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/fgrid.cpp.o -c /build/gromacs-2019.1/src/programs/view/fgrid.cpp @@ -4301,86 +4336,84 @@ cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/vals16.c cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/warnmalloc.c cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/widemuldiv.c -cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/energycomparison.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/xtc2.c +cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/energycomparison.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/xtc3.c cd /build/gromacs-2019.1/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/filter.cpp.o -c /build/gromacs-2019.1/src/programs/view/filter.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/basic-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/lib/md5.c +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp +make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +[ 1%] Built target lmfit_objlib cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat 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-I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 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-I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/scatter.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/scatter.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/group.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/group.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_init.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/tmpi_init.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_init.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/tmpi_init.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o -c /build/gromacs-2019.1/src/programs/view/xdlgitem.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/topology.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/topology.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/topology.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/topology.cpp -[ 4%] Built target tng_io_obj +[ 2%] Built target tng_io_obj cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/trajectorycomparison.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/list.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/list.cpp +cd 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/build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/type.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/type.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xmb.cpp.o -c /build/gromacs-2019.1/src/programs/view/xmb.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xutil.cpp.o -c /build/gromacs-2019.1/src/programs/view/xutil.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp +make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +[ 4%] Built target view_objlib cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp @@ -4449,12 +4484,12 @@ cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/scan.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/scan.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/scan.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/scan.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/numa_malloc.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/numa_malloc.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/once.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/once.cpp make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' [ 8%] Built target libgromacs_external @@ -4476,6 +4511,7 @@ cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/trajectoryreader.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp @@ -4488,7 +4524,6 @@ cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/trajectoryreader.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp @@ -4500,6 +4535,8 @@ cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp +make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +[ 8%] Built target mdrun_test_objlib cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp @@ -4509,8 +4546,6 @@ cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp -make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 8%] Built target mdrun_test_objlib cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp @@ -5313,9 +5348,9 @@ /usr/bin/make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/external/googletest /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/external/googletest /build/gromacs-2019.1/build/basic/src/external/googletest/CMakeFiles/gmock.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs /build/gromacs-2019.1/build/basic/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend @@ -5328,105 +5363,90 @@ cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/programs /build/gromacs-2019.1/build/basic/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs /build/gromacs-2019.1/build/basic/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs /build/gromacs-2019.1/build/basic/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build -make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +make[4]: Entering directory '/build/gromacs-2019.1/build/basic' +cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs /build/gromacs-2019.1/build/basic/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/gromacs-2019.1/build/basic' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. +make[4]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' make[4]: Entering directory '/build/gromacs-2019.1/build/basic' make[4]: Nothing to be done for 'src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +[ 0%] Built target lmfit_objlib make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 3%] Built target libgromacs_external -Scanning dependencies of target onlinehelp-test-shared +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 4%] Built target tng_io_obj -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build -make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -make[4]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/mock_helptopic.cpp -Scanning dependencies of target gmock +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 4%] Built target lmfit_objlib -/usr/bin/make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/build +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build +[ 1%] Built target mdrun_objlib make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +[ 1%] Built target mdrun_test_objlib +Scanning dependencies of target onlinehelp-test-shared +Scanning dependencies of target gmock /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +make[4]: Entering directory '/build/gromacs-2019.1/build/basic' +cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/basic/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= +/usr/bin/make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/build +[ 4%] Built target libgromacs_external +[ 5%] Built target tng_io_obj make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/external/googletest && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googlemock -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/googletest/googletest -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o -c /build/gromacs-2019.1/src/external/googletest/googlemock/src/gmock-all.cc -[ 4%] Built target mdrun_test_objlib +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build +cd /build/gromacs-2019.1/build/basic/src/external/googletest && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googlemock -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/googletest/googletest -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o -c /build/gromacs-2019.1/src/external/googletest/googletest/src/gtest-all.cc /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/basic/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/mock_helptopic.cpp make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/analysisdata/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests /build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/DependInfo.cmake --color= -cd /build/gromacs-2019.1/build/basic/src/external/googletest && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googlemock -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/googletest/googletest -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o -c /build/gromacs-2019.1/src/external/googletest/googletest/src/gtest-all.cc -[ 5%] Built target mdrun_objlib +make[4]: Entering directory '/build/gromacs-2019.1/build/basic' +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' [ 19%] Built target libgromacs_generated /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend +Scanning dependencies of target mdrunutility-test-shared +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/basic' +cd /build/gromacs-2019.1/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp Scanning dependencies of target analysisdata-test-shared make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o -c /build/gromacs-2019.1/src/gromacs/analysisdata/tests/datatest.cpp -Scanning dependencies of target mdrunutility-test-shared -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build cd /build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -c /build/gromacs-2019.1/src/gromacs/analysisdata/tests/mock_datamodule.cpp make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp -make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs /build/gromacs-2019.1/build/basic/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= -Scanning dependencies of target libgromacs make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/lmfit -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -isystem /build/gromacs-2019.1/src/external/tng_io/include -isystem /build/gromacs-2019.1/build/basic/tng/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/vsite.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/lmfit -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -isystem /build/gromacs-2019.1/src/external/tng_io/include -isystem /build/gromacs-2019.1/build/basic/tng/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o -c /build/gromacs-2019.1/src/gromacs/applied-forces/electricfield.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/lmfit -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -isystem /build/gromacs-2019.1/src/external/tng_io/include -isystem /build/gromacs-2019.1/build/basic/tng/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o -c /build/gromacs-2019.1/src/gromacs/listed-forces/listed-forces.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/lmfit -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -isystem /build/gromacs-2019.1/src/external/tng_io/include -isystem /build/gromacs-2019.1/build/basic/tng/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o -c /build/gromacs-2019.1/src/gromacs/listed-forces/manage-threading.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/lmfit -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -isystem /build/gromacs-2019.1/src/external/tng_io/include -isystem /build/gromacs-2019.1/build/basic/tng/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o -c /build/gromacs-2019.1/src/gromacs/listed-forces/orires.cpp +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 19%] Built target mdrunutility-test-shared -cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/lmfit -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -isystem /build/gromacs-2019.1/src/external/tng_io/include -isystem /build/gromacs-2019.1/build/basic/tng/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o -c /build/gromacs-2019.1/src/gromacs/listed-forces/pairs.cpp +[ 79%] Built target libgromacs make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 19%] Built target onlinehelp-test-shared -cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/lmfit -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -isystem /build/gromacs-2019.1/src/external/tng_io/include -isystem /build/gromacs-2019.1/build/basic/tng/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o -c /build/gromacs-2019.1/src/gromacs/listed-forces/position-restraints.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/lmfit -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -isystem /build/gromacs-2019.1/src/external/tng_io/include -isystem /build/gromacs-2019.1/build/basic/tng/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o -c /build/gromacs-2019.1/src/gromacs/listed-forces/restcbt.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/lmfit -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -isystem /build/gromacs-2019.1/src/external/tng_io/include -isystem /build/gromacs-2019.1/build/basic/tng/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/calculate-spline-moduli.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/lmfit -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -isystem /build/gromacs-2019.1/src/external/tng_io/include -isystem /build/gromacs-2019.1/build/basic/tng/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/ewald.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/lmfit -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -isystem /build/gromacs-2019.1/src/external/tng_io/include -isystem /build/gromacs-2019.1/build/basic/tng/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/ewald-utils.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/lmfit -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -isystem /build/gromacs-2019.1/src/external/tng_io/include -isystem /build/gromacs-2019.1/build/basic/tng/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/long-range-correction.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/cmake -E cmake_link_script CMakeFiles/libgromacs.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libgromacs.so.4 -o ../../lib/libgromacs.so.4.0.0 @CMakeFiles/libgromacs.dir/objects1.rsp -Wl,-rpath,:::::::::::::::::::::::::::::::: /usr/lib/aarch64-linux-gnu/libhwloc.so -ldl -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so -lpthread -fopenmp -lm /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblapack.so -lpthread -lm +[ 79%] Built target onlinehelp-test-shared make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 19%] Built target analysisdata-test-shared -cd /build/gromacs-2019.1/build/basic/src/gromacs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libgromacs.so.4.0.0 ../../lib/libgromacs.so.4 ../../lib/libgromacs.so +[ 79%] Built target mdrunutility-test-shared make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 79%] Built target libgromacs +[ 79%] Built target analysisdata-test-shared cd /build/gromacs-2019.1/build/basic/src/external/googletest && /usr/bin/cmake -P CMakeFiles/gmock.dir/cmake_clean_target.cmake cd /build/gromacs-2019.1/build/basic/src/external/googletest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/libgmock.a CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o @@ -5467,12 +5487,12 @@ make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' [ 80%] Built target testutils /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/depend +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/testutils/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/testutils/tests /build/gromacs-2019.1/build/basic/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/testutils/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/testutils/tests /build/gromacs-2019.1/build/basic/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend @@ -5495,46 +5515,46 @@ /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/mpitest.cpp -Scanning dependencies of target mdrun-mpi-test -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build -make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/domain_decomposition.cpp -Scanning dependencies of target mdlib-test -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build Scanning dependencies of target testutils-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/calc_verletbuf.cpp -make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/interactivetest.cpp +Scanning dependencies of target applied-forces-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +/usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/basic' +cd /build/gromacs-2019.1/build/basic/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/electricfield.cpp.o -c /build/gromacs-2019.1/src/gromacs/applied-forces/tests/electricfield.cpp Scanning dependencies of target listed-forces-test -Scanning dependencies of target domdec-test +Scanning dependencies of target mdrun-mpi-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -/usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build +/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build +/usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/bonded.cpp.o -c /build/gromacs-2019.1/src/gromacs/listed-forces/tests/bonded.cpp -Scanning dependencies of target applied-forces-test +cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/domain_decomposition.cpp make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /build/gromacs-2019.1/src/gromacs/domdec/tests/hashedmap.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -/usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build +cd /build/gromacs-2019.1/build/basic/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/bonded.cpp.o -c /build/gromacs-2019.1/src/gromacs/listed-forces/tests/bonded.cpp +Scanning dependencies of target mdlib-test Scanning dependencies of target commandline-test -make[4]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/electricfield.cpp.o -c /build/gromacs-2019.1/src/gromacs/applied-forces/tests/electricfield.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build +Scanning dependencies of target domdec-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp -cd /build/gromacs-2019.1/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +make[4]: Entering directory '/build/gromacs-2019.1/build/basic' +cd /build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/calc_verletbuf.cpp +make[4]: Entering directory '/build/gromacs-2019.1/build/basic' +cd /build/gromacs-2019.1/build/basic/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /build/gromacs-2019.1/src/gromacs/domdec/tests/hashedmap.cpp cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/minimize.cpp +cd /build/gromacs-2019.1/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/basic/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../lib/libtestutils.a ../../../lib/libgromacs.so.4.0.0 ../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/mdebin.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/mdebin.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' [ 80%] Built target testutils-mpi-test @@ -5546,10 +5566,10 @@ /usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmebsplinetest.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/domdec/tests/localatomsetmanager.cpp -cd /build/gromacs-2019.1/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/refdata_tests.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/listed-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed-forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/listed-forces-test.dir/bonded.cpp.o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed-forces-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/refdata_tests.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/domdec/tests/localatomsetmanager.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' [ 80%] Built target listed-forces-test /usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend @@ -5560,10 +5580,10 @@ /usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/fft/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/fft.cpp.o -c /build/gromacs-2019.1/src/gromacs/fft/tests/fft.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/settle.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/applied-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied-forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/applied-forces-test.dir/electricfield.cpp.o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied-forces-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/settle.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' [ 80%] Built target applied-forces-test /usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend @@ -5574,9 +5594,9 @@ /usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/gputest.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/hostallocator.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' @@ -5590,11 +5610,11 @@ make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /build/gromacs-2019.1/src/gromacs/hardware/tests/hardwaretopology.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/fft/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp +cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/mimic.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmegathertest.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/mimic.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' [ 82%] Built target fft-test /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend @@ -5606,9 +5626,9 @@ make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/arrayrefwithpadding.cpp cd /build/gromacs-2019.1/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/testasserts_tests.cpp +cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/multisim.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/shake.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/multisim.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' @@ -5623,11 +5643,14 @@ cd /build/gromacs-2019.1/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinity.cpp cd /build/gromacs-2019.1/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/xvgtest_tests.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp -cd /build/gromacs-2019.1/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/multisimtest.cpp +cd /build/gromacs-2019.1/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/dofit.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/dofit.cpp +cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/pmetest.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmesolvetest.cpp cd /build/gromacs-2019.1/build/basic/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../lib/libtestutils.a ../../../lib/libgromacs.so.4.0.0 ../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/simulationsignal.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' [ 83%] Built target testutils-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend @@ -5638,13 +5661,11 @@ /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinity-mpi.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmesolvetest.cpp -cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/pmetest.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/simulationsignal.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/functions.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/functions.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/updategroups.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' [ 83%] Built target mdrunutility-test /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend @@ -5656,19 +5677,16 @@ make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpformat.cpp cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/replicaexchange.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/updategroups.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpmanager.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlineparser.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpmanager.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/updategroupscog.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/invertmatrix.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/devicetransfers.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/invertmatrix.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-mpi-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../../../bin/mdrun-mpi-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' [ 83%] Built target mdrunutility-mpi-test /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend @@ -5679,9 +5697,13 @@ /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/abstractoptionstorage.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../../../bin/mdrun-mpi-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmesplinespreadtest.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 83%] Built target mdrun-mpi-test +[ 84%] Built target gpu_utils-test /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/random/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/random/tests /build/gromacs-2019.1/build/basic/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= @@ -5690,27 +5712,34 @@ /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/exponentialdistribution.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 84%] Built target gpu_utils-test +[ 84%] Built target mdrun-mpi-test +cd /build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmetestcommon.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/mdebin.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpwritercontext.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +[ 85%] Built target mdlib-test /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/restraint/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/restraint/tests /build/gromacs-2019.1/build/basic/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/paddedvector.cpp Scanning dependencies of target restraintpotential-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /build/gromacs-2019.1/src/gromacs/restraint/tests/manager.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpwritercontext.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/paddedvector.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/mdebin.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/testhardwarecontexts.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/gammadistribution.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/pargs.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 85%] Built target mdlib-test +[ 85%] Built target restraintpotential-test /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/tables/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/tables/tests /build/gromacs-2019.1/build/basic/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= @@ -5719,11 +5748,11 @@ /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/tables/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /build/gromacs-2019.1/src/gromacs/tables/tests/splinetable.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 85%] Built target restraintpotential-test +[ 85%] Built target onlinehelp-test /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/taskassignment/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/taskassignment/tests /build/gromacs-2019.1/build/basic/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= @@ -5732,11 +5761,6 @@ /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /build/gromacs-2019.1/src/gromacs/taskassignment/tests/usergpuids.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/gammadistribution.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 85%] Built target onlinehelp-test /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/utility/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake --color= @@ -5745,10 +5769,11 @@ /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/physicalnodecommunicator-mpi.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/pargs.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' [ 85%] Built target utility-mpi-test /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend @@ -5759,18 +5784,10 @@ /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/alignedallocator.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmetestcommon.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/normaldistribution.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/filenameoption.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/commandline-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 85%] Built target taskassignment-test +[ 85%] Built target ewald-test /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend +cd /build/gromacs-2019.1/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/normaldistribution.cpp make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/fileio/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/fileio/tests /build/gromacs-2019.1/build/basic/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= Scanning dependencies of target fileio-test @@ -5778,7 +5795,10 @@ /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/confio.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/testhardwarecontexts.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/filenameoption.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/commandline-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' [ 86%] Built target commandline-test /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend @@ -5789,26 +5809,26 @@ /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/pull.cpp.o -c /build/gromacs-2019.1/src/gromacs/pulling/tests/pull.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/seed.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/seed.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/filemd5.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/tabulatednormaldistribution.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/filenameoptionmanager.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 86%] Built target ewald-test +[ 86%] Built target taskassignment-test /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/awh/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/awh/tests /build/gromacs-2019.1/build/basic/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= -cd /build/gromacs-2019.1/build/basic/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/seed.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/seed.cpp Scanning dependencies of target awh-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/bias.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/bias.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/filenameoptionmanager.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/readinp.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' [ 86%] Built target pull-test /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend @@ -5819,15 +5839,20 @@ /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/bootstrap_loadstore.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/tabulatednormaldistribution.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/arrayref.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/readinp.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/base.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/base.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/tables/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/tngio.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/vectypes.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/threefry.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/tables/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/biasstate.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 86%] Built target table-test +[ 86%] Built target fileio-test /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/compat/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/compat/tests /build/gromacs-2019.1/build/basic/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= @@ -5836,18 +5861,24 @@ /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/make_unique.cpp.o -c /build/gromacs-2019.1/src/gromacs/compat/tests/make_unique.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/threefry.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/tngio.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /build/gromacs-2019.1/src/gromacs/compat/tests/pointers.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/option.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/option.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/biasstate.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +[ 86%] Built target table-test +cd /build/gromacs-2019.1/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/grid.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/grid.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /build/gromacs-2019.1/src/gromacs/compat/tests/pointers.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/optionsassigner.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_floatingpoint.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/compat-test.dir/make_unique.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_floatingpoint_util.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 86%] Built target fileio-test +[ 86%] Built target compat-test /usr/bin/make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/gmxana/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/gmxana/tests /build/gromacs-2019.1/build/basic/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/DependInfo.cmake --color= @@ -5856,11 +5887,9 @@ /usr/bin/make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/entropy.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxana/tests/entropy.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/optionsassigner.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/compat-test.dir/make_unique.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 86%] Built target compat-test +[ 88%] Built target awh-test /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/DependInfo.cmake --color= @@ -5869,13 +5898,10 @@ /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pdb2gmx-test.dir/pdb2gmx.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_floatingpoint.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxana/tests/gmx_traj.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 88%] Built target math-test +[ 89%] Built target math-test /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/DependInfo.cmake --color= @@ -5884,52 +5910,55 @@ /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/genconf.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/grid.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/grid.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformintdistribution.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxana/tests/gmx_traj.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/insert-molecules.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/insert-molecules.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/gmx_trjconv.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxana/tests/gmx_trjconv.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformrealdistribution.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/readir.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_vector_operations.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_math.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/solvate.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pdb2gmx-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxana/tests/gmx_msd.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/pdb2gmx-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 89%] Built target awh-test +[ 89%] Built target pdb2gmx-test +cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_memory.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/repeatingsection.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxpreprocess-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/insert-molecules.cpp.o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxpreprocess-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_integer.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +[ 89%] Built target gmxpreprocess-test /usr/bin/make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/correlationfunctions/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests /build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/DependInfo.cmake --color= -cd /build/gromacs-2019.1/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformrealdistribution.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_floatingpoint_util.cpp Scanning dependencies of target correlations-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' /usr/bin/make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/autocorr.cpp.o -c /build/gromacs-2019.1/src/gromacs/correlationfunctions/tests/autocorr.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pdb2gmx-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx-test.dir/link.txt --verbose=1 -cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/solvate.cpp -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/pdb2gmx-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxana/tests/gmx_msd.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 89%] Built target pdb2gmx-test +[ 90%] Built target random-test /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/analysisdata/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests /build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxana/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxana-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gmxana-test.dir/entropy.cpp.o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o CMakeFiles/gmxana-test.dir/gmx_trjconv.cpp.o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxana-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm Scanning dependencies of target analysisdata-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o -c /build/gromacs-2019.1/src/gromacs/analysisdata/tests/analysisdata.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o -c /build/gromacs-2019.1/src/gromacs/correlationfunctions/tests/manyautocorrelation.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o -c /build/gromacs-2019.1/src/gromacs/correlationfunctions/tests/correlationdataset.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxpreprocess-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/insert-molecules.cpp.o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxpreprocess-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/repeatingsection.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/expfit.cpp.o -c /build/gromacs-2019.1/src/gromacs/correlationfunctions/tests/expfit.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 89%] Built target gmxpreprocess-test +[ 91%] Built target gmxana-test /usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/selection/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/selection/tests /build/gromacs-2019.1/build/basic/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake --color= @@ -5938,12 +5967,13 @@ /usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /build/gromacs-2019.1/src/gromacs/selection/tests/indexutil.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/gmxana/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxana-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gmxana-test.dir/entropy.cpp.o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o CMakeFiles/gmxana-test.dir/gmx_trjconv.cpp.o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxana-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 90%] Built target gmxana-test +cd /build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o -c /build/gromacs-2019.1/src/gromacs/correlationfunctions/tests/manyautocorrelation.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o -c /build/gromacs-2019.1/src/gromacs/correlationfunctions/tests/correlationdataset.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/expfit.cpp.o -c /build/gromacs-2019.1/src/gromacs/correlationfunctions/tests/expfit.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /build/gromacs-2019.1/src/gromacs/selection/tests/nbsearch.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4_floatingpoint.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp /usr/bin/make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests /build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/DependInfo.cmake --color= @@ -5952,8 +5982,12 @@ /usr/bin/make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/moduletest.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/correlations-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/correlations-test.dir/autocorr.cpp.o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o CMakeFiles/correlations-test.dir/expfit.cpp.o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/correlations-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/timeunitmanager.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4_vector_operations.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 91%] Built target random-test +[ 91%] Built target correlations-test /usr/bin/make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/energyanalysis/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/energyanalysis/tests /build/gromacs-2019.1/build/basic/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/DependInfo.cmake --color= @@ -5962,12 +5996,14 @@ /usr/bin/make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o -c /build/gromacs-2019.1/src/gromacs/energyanalysis/tests/legacyenergy.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_vector_operations.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/correlations-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/correlations-test.dir/autocorr.cpp.o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o CMakeFiles/correlations-test.dir/expfit.cpp.o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/correlations-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/clustsize.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4_math.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/energyanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/energyanalysis-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/energyanalysis-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/cmdlinerunner.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 91%] Built target correlations-test +[ 91%] Built target energyanalysis-test /usr/bin/make -f src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/tools/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs/tools/tests /build/gromacs-2019.1/build/basic/src/gromacs/tools/tests/CMakeFiles/tool-test.dir/DependInfo.cmake --color= @@ -5976,14 +6012,16 @@ /usr/bin/make -f src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/tools/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tool-test.dir/report-methods.cpp.o -c /build/gromacs-2019.1/src/gromacs/tools/tests/report-methods.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/clustsize.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_math.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /build/gromacs-2019.1/src/gromacs/selection/tests/nbsearch.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/energyanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/energyanalysis-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/energyanalysis-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/scalar.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/treesupport.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /build/gromacs-2019.1/src/gromacs/selection/tests/poscalc.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/scalar_util.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/tools/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o -c /build/gromacs-2019.1/src/gromacs/analysisdata/tests/arraydata.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/tools/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/tool-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/tool-test.dir/report-methods.cpp.o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/tool-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 91%] Built target energyanalysis-test +[ 91%] Built target tool-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/DependInfo.cmake --color= @@ -5992,12 +6030,17 @@ /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/minimize.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/cmdlinerunner.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/tools/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/tools/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/tool-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/tool-test.dir/report-methods.cpp.o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/tool-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /build/gromacs-2019.1/src/gromacs/selection/tests/selectioncollection.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/average.cpp.o -c /build/gromacs-2019.1/src/gromacs/analysisdata/tests/average.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/scalar_math.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /build/gromacs-2019.1/src/gromacs/selection/tests/selectionoption.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/angle.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 91%] Built target tool-test +[ 92%] Built target options-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/DependInfo.cmake --color= @@ -6006,17 +6049,13 @@ /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/legacy-mdrun-test.dir/tpitest.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/tpitest.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/timeunitmanager.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /build/gromacs-2019.1/src/gromacs/selection/tests/poscalc.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/options/tests/Testing/Temporary\" 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/build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_memory.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/distance.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 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-isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/freevolume.cpp +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 91%] Built target legacy-mdrun-test +[ 95%] Built target simd-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/DependInfo.cmake --color= @@ -6025,90 +6064,71 @@ /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/compressed_x_output.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include 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/build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/grompp.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/grompp.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 92%] Built target options-test +[ 95%] Built target legacy-mdrun-test +cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem 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CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask128.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/interactiveMD.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /build/gromacs-2019.1/src/gromacs/selection/tests/toputils.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o CMakeFiles/analysisdata-test.dir/average.cpp.o CMakeFiles/analysisdata-test.dir/histogram.cpp.o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -o ../../../../bin/analysisdata-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-non-integrator-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../../../bin/mdrun-non-integrator-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 94%] Built target mdrun-non-integrator-test -cd /build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/topologyinformation.cpp -cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/interactiveMD.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/trajectory.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask32.cpp +[ 95%] Built target analysisdata-test cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/pmetest.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/pmetest.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/unionfind.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4_floatingpoint.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o -c /build/gromacs-2019.1/src/gromacs/analysisdata/tests/lifetime.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/keyvaluetreeserializer.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +[ 96%] Built target mdrun-non-integrator-test +cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/keyvaluetreetransform.cpp cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/swapcoords.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/tabulated_bonded_interactions.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask64.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask128.cpp cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/termination.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/termination.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o CMakeFiles/analysisdata-test.dir/average.cpp.o CMakeFiles/analysisdata-test.dir/histogram.cpp.o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -o ../../../../bin/analysisdata-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/topologyinformation.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/gmxregex.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/gmxregex.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 94%] Built target analysisdata-test +[ 96%] Built target selection-test +cd /build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/trajectory.cpp cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/trajectory_writing.cpp cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/mimic.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/mimic.cpp cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem 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../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/scalar.cpp -make[4]: Leaving directory 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/build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/physicalnodecommunicator.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/stringutil.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/textreader.cpp +cd /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o CMakeFiles/mdrun-test.dir/grompp.cpp.o CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o CMakeFiles/mdrun-test.dir/pmetest.cpp.o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o CMakeFiles/mdrun-test.dir/termination.cpp.o CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o CMakeFiles/mdrun-test.dir/mimic.cpp.o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../../../bin/mdrun-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' +[ 96%] Built target mdrun-test cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/textwriter.cpp cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/typetraits.cpp -cd /build/gromacs-2019.1/build/basic/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryanalysis-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o ../../analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -o ../../../../bin/trajectoryanalysis-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 98%] Built target simd-test -cd /build/gromacs-2019.1/build/basic/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 98%] Built target selection-test +[ 98%] Built target trajectoryanalysis-test cd /build/gromacs-2019.1/build/basic/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/gmxregex.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic' @@ -6148,32 +6168,32 @@ 1: [----------] Global test environment set-up. 1: [----------] 10 tests from InteractiveTestHelperTest 1: [ RUN ] InteractiveTestHelperTest.ChecksSimpleSession -1: [ OK ] InteractiveTestHelperTest.ChecksSimpleSession (4 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSimpleSession (1 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline 1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline (1 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput -1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput (1 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput -1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput (0 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsIncorrectOutput -1: [ OK ] InteractiveTestHelperTest.DetectsIncorrectOutput (1 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsIncorrectOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingOutput -1: [ OK ] InteractiveTestHelperTest.DetectsMissingOutput (0 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsMissingOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingFinalOutput -1: [ OK ] InteractiveTestHelperTest.DetectsMissingFinalOutput (1 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsMissingFinalOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraOutput -1: [ OK ] InteractiveTestHelperTest.DetectsExtraOutput (0 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsExtraOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingInput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingInput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraInput 1: [ OK ] InteractiveTestHelperTest.DetectsExtraInput (0 ms) -1: [----------] 10 tests from InteractiveTestHelperTest (10 ms total) +1: [----------] 10 tests from InteractiveTestHelperTest (6 ms total) 1: 1: [----------] 34 tests from ReferenceDataTest 1: [ RUN ] ReferenceDataTest.HandlesSimpleData 1: [ OK ] ReferenceDataTest.HandlesSimpleData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesFloatingPointData -1: [ OK ] ReferenceDataTest.HandlesFloatingPointData (0 ms) +1: [ OK ] ReferenceDataTest.HandlesFloatingPointData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesPresenceChecks 1: [ OK ] ReferenceDataTest.HandlesPresenceChecks (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesStringBlockData @@ -6183,27 +6203,27 @@ 1: [ RUN ] ReferenceDataTest.HandlesSequenceData 1: [ OK ] ReferenceDataTest.HandlesSequenceData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceOfCustomData -1: [ OK ] ReferenceDataTest.HandlesSequenceOfCustomData (1 ms) +1: [ OK ] ReferenceDataTest.HandlesSequenceOfCustomData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectData -1: [ OK ] ReferenceDataTest.HandlesIncorrectData (0 ms) +1: [ OK ] ReferenceDataTest.HandlesIncorrectData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectDataType -1: [ OK ] ReferenceDataTest.HandlesIncorrectDataType (1 ms) +1: [ OK ] ReferenceDataTest.HandlesIncorrectDataType (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingData 1: [ OK ] ReferenceDataTest.HandlesMissingData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedData -1: [ OK ] ReferenceDataTest.HandlesUncheckedData (0 ms) +1: [ OK ] ReferenceDataTest.HandlesUncheckedData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInSequence -1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInSequence (1 ms) +1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInSequence (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInCompound 1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInCompound (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariants -1: [ OK ] ReferenceDataTest.HandlesVariants (0 ms) +1: [ OK ] ReferenceDataTest.HandlesVariants (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTree 1: [ OK ] ReferenceDataTest.HandlesKeyValueTree (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeExtraKey -1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeExtraKey (1 ms) +1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeExtraKey (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeMissingKey -1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeMissingKey (0 ms) +1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeMissingKey (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectValue 1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectValue (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectType @@ -6219,7 +6239,7 @@ 1: [ RUN ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock 1: [ OK ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceItemIndices -1: [ OK ] ReferenceDataTest.HandlesSequenceItemIndices (9 ms) +1: [ OK ] ReferenceDataTest.HandlesSequenceItemIndices (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData 1: [ OK ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleNullIds @@ -6229,16 +6249,16 @@ 1: [ RUN ] ReferenceDataTest.HandlesReadingValues 1: [ OK ] ReferenceDataTest.HandlesReadingValues (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges (0 ms) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges (1 ms) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (0 ms) -1: [----------] 34 tests from ReferenceDataTest (19 ms total) +1: [----------] 34 tests from ReferenceDataTest (12 ms total) 1: 1: [----------] 7 tests from FloatingPointDifferenceTest 1: [ RUN ] FloatingPointDifferenceTest.HandlesEqualValues @@ -6265,24 +6285,24 @@ 1: [ RUN ] FloatingPointToleranceTest.RelativeToleranceAsUlp 1: [ OK ] FloatingPointToleranceTest.RelativeToleranceAsUlp (0 ms) 1: [ RUN ] FloatingPointToleranceTest.DefaultFloatTolerance -1: [ OK ] FloatingPointToleranceTest.DefaultFloatTolerance (0 ms) -1: [----------] 4 tests from FloatingPointToleranceTest (0 ms total) +1: [ OK ] FloatingPointToleranceTest.DefaultFloatTolerance (1 ms) +1: [----------] 4 tests from FloatingPointToleranceTest (1 ms total) 1: 1: [----------] 4 tests from XvgTests 1: [ RUN ] XvgTests.CreateFile -1: [ OK ] XvgTests.CreateFile (1 ms) +1: [ OK ] XvgTests.CreateFile (0 ms) 1: [ RUN ] XvgTests.CheckMissing -1: [ OK ] XvgTests.CheckMissing (0 ms) +1: [ OK ] XvgTests.CheckMissing (1 ms) 1: [ RUN ] XvgTests.CheckExtra -1: [ OK ] XvgTests.CheckExtra (1 ms) +1: [ OK ] XvgTests.CheckExtra (0 ms) 1: [ RUN ] XvgTests.ReadIncorrect -1: [ OK ] XvgTests.ReadIncorrect (0 ms) +1: [ OK ] XvgTests.ReadIncorrect (1 ms) 1: [----------] 4 tests from XvgTests (2 ms total) 1: 1: [----------] Global test environment tear-down -1: [==========] 59 tests from 5 test cases ran. (31 ms total) +1: [==========] 59 tests from 5 test cases ran. (21 ms total) 1: [ PASSED ] 59 tests. - 1/40 Test #1: TestUtilsUnitTests ............... Passed 0.05 sec + 1/40 Test #1: TestUtilsUnitTests ............... Passed 0.04 sec test 2 Start 2: TestUtilsMpiUnitTests @@ -6292,13 +6312,13 @@ 2: [----------] Global test environment set-up. 2: [----------] 1 test from MpiSelfTest 2: [ RUN ] MpiSelfTest.Runs -2: [ OK ] MpiSelfTest.Runs (10 ms) -2: [----------] 1 test from MpiSelfTest (10 ms total) +2: [ OK ] MpiSelfTest.Runs (7 ms) +2: [----------] 1 test from MpiSelfTest (7 ms total) 2: 2: [----------] Global test environment tear-down -2: [==========] 1 test from 1 test case ran. (10 ms total) +2: [==========] 1 test from 1 test case ran. (7 ms total) 2: [ PASSED ] 1 test. - 2/40 Test #2: TestUtilsMpiUnitTests ............ Passed 0.04 sec + 2/40 Test #2: TestUtilsMpiUnitTests ............ Passed 0.03 sec test 3 Start 3: MdlibUnitTest @@ -6333,8 +6353,8 @@ 3: 3: [----------] 1 test from NullSignalTest 3: [ RUN ] NullSignalTest.NullSignallerWorks -3: [ OK ] NullSignalTest.NullSignallerWorks (1 ms) -3: [----------] 1 test from NullSignalTest (1 ms total) +3: [ OK ] NullSignalTest.NullSignallerWorks (0 ms) +3: [----------] 1 test from NullSignalTest (0 ms total) 3: 3: [----------] 7 tests from SignalTest 3: [ RUN ] SignalTest.NoSignalPropagatesIfNoSignallingTakesPlace @@ -6351,7 +6371,7 @@ 3: [ OK ] SignalTest.NonLocalSignalPropagatesWhenInterSimSignalTakesPlace (0 ms) 3: [ RUN ] SignalTest.NonLocalSignalPropagatesWhenBothTakePlace 3: [ OK ] SignalTest.NonLocalSignalPropagatesWhenBothTakePlace (0 ms) -3: [----------] 7 tests from SignalTest (0 ms total) +3: [----------] 7 tests from SignalTest (1 ms total) 3: 3: [----------] 9 tests from UpdateGroups 3: [ RUN ] UpdateGroups.ethaneUA @@ -6371,13 +6391,13 @@ 3: [ RUN ] UpdateGroups.waterFlexAngle 3: [ OK ] UpdateGroups.waterFlexAngle (0 ms) 3: [ RUN ] UpdateGroups.twoMoltypes -3: [ OK ] UpdateGroups.twoMoltypes (0 ms) -3: [----------] 9 tests from UpdateGroups (0 ms total) +3: [ OK ] UpdateGroups.twoMoltypes (1 ms) +3: [----------] 9 tests from UpdateGroups (1 ms total) 3: 3: [----------] 1 test from UpdateGroupsCog 3: [ RUN ] UpdateGroupsCog.ComputesCogs -3: [ OK ] UpdateGroupsCog.ComputesCogs (1 ms) -3: [----------] 1 test from UpdateGroupsCog (1 ms total) +3: [ OK ] UpdateGroupsCog.ComputesCogs (0 ms) +3: [----------] 1 test from UpdateGroupsCog (0 ms total) 3: 3: [----------] 24 tests from WithParameters/SettleTest 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/0 @@ -6413,7 +6433,7 @@ 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/15 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/15 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/16 -3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/16 (1 ms) +3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/16 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/17 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/17 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/18 @@ -6425,13 +6445,13 @@ 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/21 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/21 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/22 -3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/22 (0 ms) +3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/22 (1 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/23 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/23 (0 ms) 3: [----------] 24 tests from WithParameters/SettleTest (1 ms total) 3: 3: [----------] Global test environment tear-down -3: [==========] 50 tests from 8 test cases ran. (4 ms total) +3: [==========] 50 tests from 8 test cases ran. (5 ms total) 3: [ PASSED ] 50 tests. 3/40 Test #3: MdlibUnitTest .................... Passed 0.03 sec test 4 @@ -6443,9 +6463,9 @@ 4: [----------] Global test environment set-up. 4: [----------] 3 tests from ElectricFieldTest 4: [ RUN ] ElectricFieldTest.Static -4: [ OK ] ElectricFieldTest.Static (0 ms) +4: [ OK ] ElectricFieldTest.Static (1 ms) 4: [ RUN ] ElectricFieldTest.Oscillating -4: [ OK ] ElectricFieldTest.Oscillating (1 ms) +4: [ OK ] ElectricFieldTest.Oscillating (0 ms) 4: [ RUN ] ElectricFieldTest.Pulsed 4: [ OK ] ElectricFieldTest.Pulsed (0 ms) 4: [----------] 3 tests from ElectricFieldTest (1 ms total) @@ -6465,11 +6485,11 @@ 5: [ RUN ] BondedTest.BondAnglePbcNone 5: [ OK ] BondedTest.BondAnglePbcNone (0 ms) 5: [ RUN ] BondedTest.BondAnglePbcXy -5: [ OK ] BondedTest.BondAnglePbcXy (0 ms) +5: [ OK ] BondedTest.BondAnglePbcXy (1 ms) 5: [ RUN ] BondedTest.BondAnglePbcXyz 5: [ OK ] BondedTest.BondAnglePbcXyz (0 ms) 5: [ RUN ] BondedTest.DihedralAnglePbcNone -5: [ OK ] BondedTest.DihedralAnglePbcNone (1 ms) +5: [ OK ] BondedTest.DihedralAnglePbcNone (0 ms) 5: [ RUN ] BondedTest.DihedralAnglePbcXy 5: [ OK ] BondedTest.DihedralAnglePbcXy (0 ms) 5: [ RUN ] BondedTest.DihedralAnglePbcXyz @@ -6487,15 +6507,15 @@ 5: [ RUN ] BondedTest.IfuncAnglesPbcXYZ 5: [ OK ] BondedTest.IfuncAnglesPbcXYZ (0 ms) 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcNo -5: [ OK ] BondedTest.IfuncProperDihedralsPbcNo (0 ms) +5: [ OK ] BondedTest.IfuncProperDihedralsPbcNo (1 ms) 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcXy 5: [ OK ] BondedTest.IfuncProperDihedralsPbcXy (0 ms) 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcXyz -5: [ OK ] BondedTest.IfuncProperDihedralsPbcXyz (1 ms) -5: [----------] 15 tests from BondedTest (2 ms total) +5: [ OK ] BondedTest.IfuncProperDihedralsPbcXyz (0 ms) +5: [----------] 15 tests from BondedTest (3 ms total) 5: 5: [----------] Global test environment tear-down -5: [==========] 15 tests from 1 test case ran. (2 ms total) +5: [==========] 15 tests from 1 test case ran. (3 ms total) 5: [ PASSED ] 15 tests. 5/40 Test #5: ListedForcesTest ................. Passed 0.03 sec test 6 @@ -6509,40 +6529,40 @@ 6: [ RUN ] CommandLineHelpModuleTest.PrintsGeneralHelp 6: [ OK ] CommandLineHelpModuleTest.PrintsGeneralHelp (1 ms) 6: [ RUN ] CommandLineHelpModuleTest.PrintsHelpOnTopic -6: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (0 ms) +6: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (1 ms) 6: [ RUN ] CommandLineHelpModuleTest.ExportsHelp -6: [ OK ] CommandLineHelpModuleTest.ExportsHelp (10 ms) -6: [----------] 3 tests from CommandLineHelpModuleTest (11 ms total) +6: [ OK ] CommandLineHelpModuleTest.ExportsHelp (1 ms) +6: [----------] 3 tests from CommandLineHelpModuleTest (3 ms total) 6: 6: [----------] 6 tests from CommandLineHelpWriterTest 6: [ RUN ] CommandLineHelpWriterTest.HandlesOptionTypes -6: [ OK ] CommandLineHelpWriterTest.HandlesOptionTypes (1 ms) +6: [ OK ] CommandLineHelpWriterTest.HandlesOptionTypes (5 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables -6: [ OK ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables (0 ms) +6: [ OK ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables (1 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesLongFileOptions -6: [ OK ] CommandLineHelpWriterTest.HandlesLongFileOptions (1 ms) +6: [ OK ] CommandLineHelpWriterTest.HandlesLongFileOptions (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesLongOptions 6: [ OK ] CommandLineHelpWriterTest.HandlesLongOptions (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesOptionGroups -6: [ OK ] CommandLineHelpWriterTest.HandlesOptionGroups (0 ms) +6: [ OK ] CommandLineHelpWriterTest.HandlesOptionGroups (1 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesHelpText 6: [ OK ] CommandLineHelpWriterTest.HandlesHelpText (0 ms) -6: [----------] 6 tests from CommandLineHelpWriterTest (2 ms total) +6: [----------] 6 tests from CommandLineHelpWriterTest (7 ms total) 6: 6: [----------] 6 tests from CommandLineModuleManagerTest 6: [ RUN ] CommandLineModuleManagerTest.RunsModule -6: [ OK ] CommandLineModuleManagerTest.RunsModule (1 ms) +6: [ OK ] CommandLineModuleManagerTest.RunsModule (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelp 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelp (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet -6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet (0 ms) +6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet (1 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames 6: [ OK ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames (0 ms) -6: [----------] 6 tests from CommandLineModuleManagerTest (2 ms total) +6: [----------] 6 tests from CommandLineModuleManagerTest (1 ms total) 6: 6: [----------] 13 tests from CommandLineParserTest 6: [ RUN ] CommandLineParserTest.HandlesSingleValues @@ -6558,11 +6578,11 @@ 6: [ RUN ] CommandLineParserTest.HandlesString 6: [ OK ] CommandLineParserTest.HandlesString (0 ms) 6: [ RUN ] CommandLineParserTest.RejectsStringWithMultipleValues -6: [ OK ] CommandLineParserTest.RejectsStringWithMultipleValues (1 ms) +6: [ OK ] CommandLineParserTest.RejectsStringWithMultipleValues (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesDoubleDashOptionPrefix 6: [ OK ] CommandLineParserTest.HandlesDoubleDashOptionPrefix (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesOptionsStartingWithNumbers -6: [ OK ] CommandLineParserTest.HandlesOptionsStartingWithNumbers (0 ms) +6: [ OK ] CommandLineParserTest.HandlesOptionsStartingWithNumbers (1 ms) 6: [ RUN ] CommandLineParserTest.HandlesSkipUnknown 6: [ OK ] CommandLineParserTest.HandlesSkipUnknown (0 ms) 6: [ RUN ] CommandLineParserTest.RejectsPositionalArgumentsByDefault @@ -6614,7 +6634,7 @@ 6: [ RUN ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName 6: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension -6: [ OK ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension (0 ms) +6: [ OK ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension (1 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesNonExistentInputFiles 6: [ OK ] ParseCommonArgsTest.HandlesNonExistentInputFiles (0 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesNonExistentOptionalInputFiles @@ -6634,9 +6654,9 @@ 6: [----------] 21 tests from ParseCommonArgsTest (4 ms total) 6: 6: [----------] Global test environment tear-down -6: [==========] 55 tests from 6 test cases ran. (20 ms total) +6: [==========] 55 tests from 6 test cases ran. (17 ms total) 6: [ PASSED ] 55 tests. - 6/40 Test #6: CommandLineUnitTests ............. Passed 0.06 sec + 6/40 Test #6: CommandLineUnitTests ............. Passed 0.04 sec test 7 Start 7: DomDecTests @@ -6671,7 +6691,7 @@ 7: [----------] Global test environment tear-down 7: [==========] 9 tests from 2 test cases ran. (0 ms total) 7: [ PASSED ] 9 tests. - 7/40 Test #7: DomDecTests ...................... Passed 0.02 sec + 7/40 Test #7: DomDecTests ...................... Passed 0.03 sec test 8 Start 8: EwaldUnitTests @@ -6681,44 +6701,44 @@ 8: [----------] Global test environment set-up. 8: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest 8: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 -8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 (0 ms) +8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 (1 ms) 8: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 (0 ms) 8: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 (0 ms) 8: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 -8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (3 ms) +8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (4 ms) 8: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 -8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 (1 ms) -8: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (4 ms total) +8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 (0 ms) +8: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (5 ms total) 8: 8: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (3 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (7 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (9 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 @@ -6728,26 +6748,26 @@ 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (1 ms) -8: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (45 ms total) +8: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (55 ms total) 8: 8: [----------] 144 tests from SaneInput/PmeGatherTest 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/0 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/0 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/0 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/1 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/1 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/1 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/2 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/2 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/3 @@ -6759,7 +6779,7 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/6 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/6 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/7 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/7 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/7 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/8 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/8 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/9 @@ -6771,7 +6791,7 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/12 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/13 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/13 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/13 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/14 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/14 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/15 @@ -6791,27 +6811,27 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/22 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/23 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/24 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/25 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/25 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/25 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/26 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/26 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/26 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/27 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/27 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/27 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/28 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/28 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/28 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/29 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/29 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/29 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/30 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/30 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/30 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/31 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/31 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/31 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/32 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/32 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/32 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/33 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/33 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/33 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/34 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/34 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/35 @@ -6819,29 +6839,29 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/36 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/37 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/37 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/37 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/38 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/38 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/39 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/40 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/40 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/41 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/41 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/42 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/42 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/42 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/43 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/43 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/43 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/44 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/44 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/44 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/45 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/45 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/45 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/46 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/46 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/46 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/47 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/47 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/47 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/48 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/48 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/48 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/49 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/49 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/50 @@ -6873,35 +6893,35 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/63 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/63 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/64 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/64 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/64 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/65 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/66 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/66 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/67 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/68 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/69 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/70 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/70 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/70 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/71 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/72 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/72 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/73 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/73 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/73 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/74 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/74 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/75 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/75 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/75 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/76 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/76 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/77 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/77 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/77 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/78 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/78 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/78 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/79 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/79 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/80 @@ -6909,15 +6929,15 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/81 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/82 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/82 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/82 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/83 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/83 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/83 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/84 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/85 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/85 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/86 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/86 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/86 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/87 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/87 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/88 @@ -6939,35 +6959,35 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/96 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/96 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/97 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/97 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/97 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/98 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/98 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/98 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/99 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/100 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/101 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/102 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/103 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/104 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/105 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/105 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/105 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/106 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/106 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/106 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/107 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/107 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/107 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/108 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/109 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/109 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/109 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/110 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/110 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/110 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/111 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/111 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/111 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/112 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/112 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/113 @@ -6999,7 +7019,7 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/126 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/126 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/127 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/127 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/127 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/128 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/128 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/129 @@ -7025,14 +7045,14 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/139 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/139 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/140 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/140 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/140 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/141 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/141 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/142 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/143 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (1 ms) -8: [----------] 144 tests from SaneInput/PmeGatherTest (68 ms total) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (0 ms) +8: [----------] 144 tests from SaneInput/PmeGatherTest (74 ms total) 8: 8: [----------] 16 tests from SaneInput/PmeSolveTest 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/0 @@ -7044,7 +7064,7 @@ 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/3 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/4 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (2 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (3 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/5 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/6 @@ -7052,7 +7072,7 @@ 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/7 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/7 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/8 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (1 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/9 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/10 @@ -7062,12 +7082,12 @@ 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/12 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/12 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/13 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/13 (1 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/13 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/14 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/15 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (1 ms) -8: [----------] 16 tests from SaneInput/PmeSolveTest (23 ms total) +8: [----------] 16 tests from SaneInput/PmeSolveTest (28 ms total) 8: 8: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 @@ -7075,18 +7095,18 @@ 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 -8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 (0 ms) +8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 -8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (1 ms) +8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (2 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (1 ms) -8: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (8 ms total) +8: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (9 ms total) 8: 8: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 @@ -7094,18 +7114,18 @@ 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (2 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 (1 ms) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 (2 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 (2 ms) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 (1 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (2 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (1 ms) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (2 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (2 ms) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (1 ms) -8: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (13 ms total) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (2 ms) +8: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (15 ms total) 8: 8: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 @@ -7119,13 +7139,13 @@ 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 (2 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (2 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (2 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (2 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 @@ -7133,55 +7153,55 @@ 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (2 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 (2 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (1 ms) -8: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (21 ms total) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (2 ms) +8: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (25 ms total) 8: 8: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 (2 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (3 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (5 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (1 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (2 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (3 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 (1 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (1 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (1 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (2 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (3 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (2 ms) -8: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (24 ms total) +8: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (27 ms total) 8: 8: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (2 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (3 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (2 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (3 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 (2 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 (3 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 @@ -7194,13 +7214,13 @@ 8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (3 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (3 ms) -8: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (27 ms total) +8: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (31 ms total) 8: 8: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (4 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (5 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (5 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (4 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (6 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 @@ -7208,25 +7228,25 @@ 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (9 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (9 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (10 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (4 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (4 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (5 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (6 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (7 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (6 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (8 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (9 ms) -8: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (82 ms total) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (10 ms) +8: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (89 ms total) 8: 8: [----------] Global test environment tear-down -8: [==========] 257 tests from 10 test cases ran. (379 ms total) +8: [==========] 257 tests from 10 test cases ran. (430 ms total) 8: [ PASSED ] 257 tests. - 8/40 Test #8: EwaldUnitTests ................... Passed 0.44 sec + 8/40 Test #8: EwaldUnitTests ................... Passed 0.50 sec test 9 Start 9: FFTUnitTests @@ -7236,24 +7256,24 @@ 9: [----------] Global test environment set-up. 9: [----------] 2 tests from ManyFFTTest 9: [ RUN ] ManyFFTTest.Complex1DLength48Multi5Test -9: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (8 ms) +9: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (9 ms) 9: [ RUN ] ManyFFTTest.Real1DLength48Multi5Test -9: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (16 ms) +9: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (14 ms) 9: [----------] 2 tests from ManyFFTTest (25 ms total) 9: 9: [----------] 1 test from FFTTest 9: [ RUN ] FFTTest.Real2DLength18_15Test -9: [ OK ] FFTTest.Real2DLength18_15Test (4 ms) +9: [ OK ] FFTTest.Real2DLength18_15Test (5 ms) 9: [----------] 1 test from FFTTest (5 ms total) 9: 9: [----------] 1 test from FFFTest3D 9: [ RUN ] FFFTest3D.Real5_6_9 -9: [ OK ] FFFTest3D.Real5_6_9 (2 ms) +9: [ OK ] FFFTest3D.Real5_6_9 (3 ms) 9: [----------] 1 test from FFFTest3D (3 ms total) 9: 9: [----------] 10 tests from 7_8_25_36_60/FFTTest1D 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/0 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/0 (5 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/0 (1 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/1 9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/1 (1 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/2 @@ -7261,23 +7281,23 @@ 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/3 9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (3 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/4 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (2 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (3 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/0 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (1 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (0 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/1 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (1 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (0 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/2 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/2 (0 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/2 (1 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/3 9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (8 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/4 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (10 ms) -9: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (36 ms total) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (12 ms) +9: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (32 ms total) 9: 9: [----------] Global test environment tear-down -9: [==========] 14 tests from 4 test cases ran. (70 ms total) +9: [==========] 14 tests from 4 test cases ran. (65 ms total) 9: [ PASSED ] 14 tests. - 9/40 Test #9: FFTUnitTests ..................... Passed 0.09 sec + 9/40 Test #9: FFTUnitTests ..................... Passed 0.08 sec test 10 Start 10: GpuUtilsUnitTests @@ -7433,23 +7453,23 @@ 10: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment 10: [ OK ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment -10: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (1 ms) +10: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment 10: [ OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/1.Move 10: [ OK ] AllocatorTest/1.Move (0 ms) -10: [----------] 4 tests from AllocatorTest/1 (1 ms total) +10: [----------] 4 tests from AllocatorTest/1 (0 ms total) 10: 10: [----------] 4 tests from AllocatorTest/2, where TypeParam = gmx::Allocator, gmx::HostAllocationPolicy> 10: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment 10: [ OK ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment -10: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (0 ms) +10: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (1 ms) 10: [ RUN ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment 10: [ OK ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/2.Move 10: [ OK ] AllocatorTest/2.Move (0 ms) -10: [----------] 4 tests from AllocatorTest/2 (0 ms total) +10: [----------] 4 tests from AllocatorTest/2 (1 ms total) 10: 10: [----------] 4 tests from AllocatorTest/3, where TypeParam = gmx::Allocator 10: [ RUN ] AllocatorTest/3.AllocatorAlignAllocatesWithAlignment @@ -7475,19 +7495,19 @@ 11: [----------] Global test environment set-up. 11: [----------] 4 tests from HardwareTopologyTest 11: [ RUN ] HardwareTopologyTest.Execute -11: [ OK ] HardwareTopologyTest.Execute (22 ms) +11: [ OK ] HardwareTopologyTest.Execute (26 ms) 11: [ RUN ] HardwareTopologyTest.HwlocExecute -11: [ OK ] HardwareTopologyTest.HwlocExecute (22 ms) +11: [ OK ] HardwareTopologyTest.HwlocExecute (24 ms) 11: [ RUN ] HardwareTopologyTest.ProcessorSelfconsistency 11: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (20 ms) 11: [ RUN ] HardwareTopologyTest.NumaCacheSelfconsistency -11: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (20 ms) -11: [----------] 4 tests from HardwareTopologyTest (84 ms total) +11: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (25 ms) +11: [----------] 4 tests from HardwareTopologyTest (95 ms total) 11: 11: [----------] Global test environment tear-down -11: [==========] 4 tests from 1 test case ran. (84 ms total) +11: [==========] 4 tests from 1 test case ran. (95 ms total) 11: [ PASSED ] 4 tests. -11/40 Test #11: HardwareUnitTests ................ Passed 0.10 sec +11/40 Test #11: HardwareUnitTests ................ Passed 0.11 sec test 12 Start 12: MathUnitTests @@ -7543,7 +7563,7 @@ 12: 12: [----------] 21 tests from FunctionTest 12: [ RUN ] FunctionTest.StaticLog2 -12: [ OK ] FunctionTest.StaticLog2 (0 ms) +12: [ OK ] FunctionTest.StaticLog2 (1 ms) 12: [ RUN ] FunctionTest.Log2I32Bit 12: [ OK ] FunctionTest.Log2I32Bit (0 ms) 12: [ RUN ] FunctionTest.Log2I64Bit @@ -7551,9 +7571,9 @@ 12: [ RUN ] FunctionTest.GreatestCommonDivisor 12: [ OK ] FunctionTest.GreatestCommonDivisor (0 ms) 12: [ RUN ] FunctionTest.InvsqrtFloat -12: [ OK ] FunctionTest.InvsqrtFloat (1 ms) +12: [ OK ] FunctionTest.InvsqrtFloat (0 ms) 12: [ RUN ] FunctionTest.InvsqrtDouble -12: [ OK ] FunctionTest.InvsqrtDouble (0 ms) +12: [ OK ] FunctionTest.InvsqrtDouble (1 ms) 12: [ RUN ] FunctionTest.InvsqrtInteger 12: [ OK ] FunctionTest.InvsqrtInteger (0 ms) 12: [ RUN ] FunctionTest.InvcbrtFloat @@ -7565,7 +7585,7 @@ 12: [ RUN ] FunctionTest.SixthrootFloat 12: [ OK ] FunctionTest.SixthrootFloat (0 ms) 12: [ RUN ] FunctionTest.SixthrootDouble -12: [ OK ] FunctionTest.SixthrootDouble (0 ms) +12: [ OK ] FunctionTest.SixthrootDouble (1 ms) 12: [ RUN ] FunctionTest.SixthrootInteger 12: [ OK ] FunctionTest.SixthrootInteger (0 ms) 12: [ RUN ] FunctionTest.InvsixthrootFloat @@ -7579,12 +7599,12 @@ 12: [ RUN ] FunctionTest.ErfInvFloat 12: [ OK ] FunctionTest.ErfInvFloat (0 ms) 12: [ RUN ] FunctionTest.ErfInvDouble -12: [ OK ] FunctionTest.ErfInvDouble (0 ms) +12: [ OK ] FunctionTest.ErfInvDouble (1 ms) 12: [ RUN ] FunctionTest.ErfAndErfInvAreInversesFloat 12: [ OK ] FunctionTest.ErfAndErfInvAreInversesFloat (0 ms) 12: [ RUN ] FunctionTest.ErfAndErfInvAreInversesDouble -12: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (1 ms) -12: [----------] 21 tests from FunctionTest (3 ms total) +12: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (0 ms) +12: [----------] 21 tests from FunctionTest (4 ms total) 12: 12: [----------] 2 tests from InvertMatrixTest 12: [ RUN ] InvertMatrixTest.IdentityIsImpotent @@ -7642,7 +7662,7 @@ 12: [ OK ] PaddedVectorTest/3.CanMoveAssign (0 ms) 12: [ RUN ] PaddedVectorTest/3.CanSwap 12: [ OK ] PaddedVectorTest/3.CanSwap (0 ms) -12: [----------] 4 tests from PaddedVectorTest/3 (1 ms total) +12: [----------] 4 tests from PaddedVectorTest/3 (0 ms total) 12: 12: [----------] 4 tests from PaddedVectorTest/4, where TypeParam = std::allocator > 12: [ RUN ] PaddedVectorTest/4.ConstructsResizesAndReserves @@ -7674,8 +7694,8 @@ 12: [ RUN ] PaddedVectorTest/6.CanMoveAssign 12: [ OK ] PaddedVectorTest/6.CanMoveAssign (0 ms) 12: [ RUN ] PaddedVectorTest/6.CanSwap -12: [ OK ] PaddedVectorTest/6.CanSwap (1 ms) -12: [----------] 4 tests from PaddedVectorTest/6 (1 ms total) +12: [ OK ] PaddedVectorTest/6.CanSwap (0 ms) +12: [----------] 4 tests from PaddedVectorTest/6 (0 ms total) 12: 12: [----------] 4 tests from PaddedVectorTest/7, where TypeParam = gmx::Allocator 12: [ RUN ] PaddedVectorTest/7.ConstructsResizesAndReserves @@ -7697,7 +7717,7 @@ 12: [ OK ] PaddedVectorTest/8.CanMoveAssign (0 ms) 12: [ RUN ] PaddedVectorTest/8.CanSwap 12: [ OK ] PaddedVectorTest/8.CanSwap (0 ms) -12: [----------] 4 tests from PaddedVectorTest/8 (0 ms total) +12: [----------] 4 tests from PaddedVectorTest/8 (1 ms total) 12: 12: [----------] 4 tests from PaddedVectorTest/9, where TypeParam = gmx::Allocator, gmx::AlignedAllocationPolicy> 12: [ RUN ] PaddedVectorTest/9.ConstructsResizesAndReserves @@ -7798,39 +7818,39 @@ 13: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads 13: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads -13: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads (0 ms) +13: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads (1 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads -13: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads (1 ms) +13: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithUnknownHardware 13: [ OK ] ThreadAffinityTest.DoesNothingWithUnknownHardware (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithTooManyThreads 13: [ OK ] ThreadAffinityTest.DoesNothingWithTooManyThreads (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeOffset -13: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeOffset (0 ms) +13: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeOffset (1 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeStride 13: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeStride (0 ms) 13: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithAuto -13: [ OK ] ThreadAffinityTest.PinsSingleThreadWithAuto (1 ms) +13: [ OK ] ThreadAffinityTest.PinsSingleThreadWithAuto (0 ms) 13: [ RUN ] ThreadAffinityTest.PinsSingleThreadWhenForced -13: [ OK ] ThreadAffinityTest.PinsSingleThreadWhenForced (0 ms) +13: [ OK ] ThreadAffinityTest.PinsSingleThreadWhenForced (1 ms) 13: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced -13: [ OK ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced (5 ms) +13: [ OK ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced (4 ms) 13: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread 13: NOTE: Affinity setting failed. -13: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread (1 ms) +13: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread (0 ms) 13: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithAuto -13: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (0 ms) +13: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (1 ms) 13: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced -13: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (1 ms) +13: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (0 ms) 13: [ RUN ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads -13: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (0 ms) +13: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (1 ms) 13: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing 13: NOTE: Affinity setting for 1/2 threads failed. 13: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (0 ms) -13: [----------] 17 tests from ThreadAffinityTest (9 ms total) +13: [----------] 17 tests from ThreadAffinityTest (10 ms total) 13: 13: [----------] Global test environment tear-down -13: [==========] 17 tests from 1 test case ran. (9 ms total) +13: [==========] 17 tests from 1 test case ran. (10 ms total) 13: [ PASSED ] 17 tests. 13/40 Test #13: MdrunUtilityUnitTests ............ Passed 0.03 sec test 14 @@ -7842,40 +7862,40 @@ 14: [----------] Global test environment set-up. 14: [----------] 6 tests from ThreadAffinityMultiRankTest 14: [ RUN ] ThreadAffinityMultiRankTest.PinsWholeNode -14: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (69 ms) +14: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (77 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride -14: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (52 ms) +14: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (56 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.PinsTwoNodes -14: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (43 ms) +14: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (44 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled -14: [ OK ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled (40 ms) +14: [ OK ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled (44 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto -14: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (96 ms) +14: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (52 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce -14: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (40 ms) -14: [----------] 6 tests from ThreadAffinityMultiRankTest (342 ms total) +14: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (153 ms) +14: [----------] 6 tests from ThreadAffinityMultiRankTest (426 ms total) 14: 14: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (47 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (92 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (40 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (83 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (55 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (76 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (56 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (68 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (35 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (172 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (56 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (60 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (39 ms) -14: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (331 ms total) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (108 ms) +14: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (659 ms total) 14: 14: [----------] Global test environment tear-down -14: [==========] 13 tests from 2 test cases ran. (673 ms total) +14: [==========] 13 tests from 2 test cases ran. (1085 ms total) 14: [ PASSED ] 13 tests. -14/40 Test #14: MdrunUtilityMpiUnitTests ......... Passed 0.69 sec +14/40 Test #14: MdrunUtilityMpiUnitTests ......... Passed 1.11 sec test 15 Start 15: OnlineHelpUnitTests @@ -7895,24 +7915,24 @@ 15: [ RUN ] TextTableFormatterTest.HandlesLastColumnFolding 15: [ OK ] TextTableFormatterTest.HandlesLastColumnFolding (0 ms) 15: [ RUN ] TextTableFormatterTest.HandlesEmptyColumns -15: [ OK ] TextTableFormatterTest.HandlesEmptyColumns (0 ms) -15: [----------] 6 tests from TextTableFormatterTest (1 ms total) +15: [ OK ] TextTableFormatterTest.HandlesEmptyColumns (1 ms) +15: [----------] 6 tests from TextTableFormatterTest (2 ms total) 15: 15: [----------] 3 tests from HelpManagerTest 15: [ RUN ] HelpManagerTest.HandlesRootTopic -15: [ OK ] HelpManagerTest.HandlesRootTopic (1 ms) +15: [ OK ] HelpManagerTest.HandlesRootTopic (0 ms) 15: [ RUN ] HelpManagerTest.HandlesSubTopics 15: [ OK ] HelpManagerTest.HandlesSubTopics (0 ms) 15: [ RUN ] HelpManagerTest.HandlesInvalidTopics 15: [ OK ] HelpManagerTest.HandlesInvalidTopics (0 ms) -15: [----------] 3 tests from HelpManagerTest (1 ms total) +15: [----------] 3 tests from HelpManagerTest (0 ms total) 15: 15: [----------] 2 tests from HelpTopicFormattingTest 15: [ RUN ] HelpTopicFormattingTest.FormatsSimpleTopic -15: [ OK ] HelpTopicFormattingTest.FormatsSimpleTopic (0 ms) +15: [ OK ] HelpTopicFormattingTest.FormatsSimpleTopic (1 ms) 15: [ RUN ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics -15: [ OK ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics (0 ms) -15: [----------] 2 tests from HelpTopicFormattingTest (1 ms total) +15: [ OK ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics (4 ms) +15: [----------] 2 tests from HelpTopicFormattingTest (5 ms total) 15: 15: [----------] 11 tests from HelpWriterContextTest 15: [ RUN ] HelpWriterContextTest.FormatsParagraphs @@ -7920,7 +7940,7 @@ 15: [ RUN ] HelpWriterContextTest.FormatsRstStyleParagraphs 15: [ OK ] HelpWriterContextTest.FormatsRstStyleParagraphs (0 ms) 15: [ RUN ] HelpWriterContextTest.CleansUpExtraWhitespace -15: [ OK ] HelpWriterContextTest.CleansUpExtraWhitespace (0 ms) +15: [ OK ] HelpWriterContextTest.CleansUpExtraWhitespace (1 ms) 15: [ RUN ] HelpWriterContextTest.FormatsLiteralText 15: [ OK ] HelpWriterContextTest.FormatsLiteralText (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsLiteralTextAtBeginning @@ -7928,21 +7948,21 @@ 15: [ RUN ] HelpWriterContextTest.FormatsLiteralTextWithIndentation 15: [ OK ] HelpWriterContextTest.FormatsLiteralTextWithIndentation (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsBulletList -15: [ OK ] HelpWriterContextTest.FormatsBulletList (1 ms) +15: [ OK ] HelpWriterContextTest.FormatsBulletList (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsEnumeratedList 15: [ OK ] HelpWriterContextTest.FormatsEnumeratedList (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsSimpleTable -15: [ OK ] HelpWriterContextTest.FormatsSimpleTable (0 ms) +15: [ OK ] HelpWriterContextTest.FormatsSimpleTable (1 ms) 15: [ RUN ] HelpWriterContextTest.FormatsGridTable 15: [ OK ] HelpWriterContextTest.FormatsGridTable (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsTitles 15: [ OK ] HelpWriterContextTest.FormatsTitles (0 ms) -15: [----------] 11 tests from HelpWriterContextTest (1 ms total) +15: [----------] 11 tests from HelpWriterContextTest (2 ms total) 15: 15: [----------] Global test environment tear-down -15: [==========] 22 tests from 4 test cases ran. (4 ms total) +15: [==========] 22 tests from 4 test cases ran. (9 ms total) 15: [ PASSED ] 22 tests. -15/40 Test #15: OnlineHelpUnitTests .............. Passed 0.02 sec +15/40 Test #15: OnlineHelpUnitTests .............. Passed 0.04 sec test 16 Start 16: OptionsUnitTests @@ -7956,9 +7976,9 @@ 16: [ RUN ] AbstractOptionStorageTest.HandlesValueRemoval 16: [ OK ] AbstractOptionStorageTest.HandlesValueRemoval (0 ms) 16: [ RUN ] AbstractOptionStorageTest.HandlesValueAddition -16: [ OK ] AbstractOptionStorageTest.HandlesValueAddition (0 ms) +16: [ OK ] AbstractOptionStorageTest.HandlesValueAddition (1 ms) 16: [ RUN ] AbstractOptionStorageTest.HandlesTooManyValueAddition -16: [ OK ] AbstractOptionStorageTest.HandlesTooManyValueAddition (1 ms) +16: [ OK ] AbstractOptionStorageTest.HandlesTooManyValueAddition (0 ms) 16: [ RUN ] AbstractOptionStorageTest.AllowsEmptyValues 16: [ OK ] AbstractOptionStorageTest.AllowsEmptyValues (0 ms) 16: [----------] 5 tests from AbstractOptionStorageTest (1 ms total) @@ -7980,7 +8000,7 @@ 16: [ OK ] FileNameOptionTest.GivesErrorOnUnknownFileSuffix (0 ms) 16: [ RUN ] FileNameOptionTest.GivesErrorOnInvalidFileSuffix 16: [ OK ] FileNameOptionTest.GivesErrorOnInvalidFileSuffix (0 ms) -16: [----------] 8 tests from FileNameOptionTest (0 ms total) +16: [----------] 8 tests from FileNameOptionTest (1 ms total) 16: 16: [----------] 15 tests from FileNameOptionManagerTest 16: [ RUN ] FileNameOptionManagerTest.AddsMissingExtension @@ -7990,11 +8010,11 @@ 16: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile 16: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile (0 ms) 16: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile -16: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile (1 ms) +16: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile (0 ms) 16: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingDefaultInputFile 16: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingDefaultInputFile (0 ms) 16: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingRequiredInputFile -16: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingRequiredInputFile (0 ms) +16: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingRequiredInputFile (1 ms) 16: [ RUN ] FileNameOptionManagerTest.AcceptsMissingInputFileIfSpecified 16: [ OK ] FileNameOptionManagerTest.AcceptsMissingInputFileIfSpecified (0 ms) 16: [ RUN ] FileNameOptionManagerTest.AcceptsMissingDefaultInputFileIfSpecified @@ -8030,11 +8050,11 @@ 16: [ RUN ] OptionsAssignerTest.HandlesMultipleParameter 16: [ OK ] OptionsAssignerTest.HandlesMultipleParameter (0 ms) 16: [ RUN ] OptionsAssignerTest.HandlesMissingValue -16: [ OK ] OptionsAssignerTest.HandlesMissingValue (1 ms) +16: [ OK ] OptionsAssignerTest.HandlesMissingValue (0 ms) 16: [ RUN ] OptionsAssignerTest.HandlesExtraValue 16: [ OK ] OptionsAssignerTest.HandlesExtraValue (0 ms) 16: [ RUN ] OptionsAssignerTest.HandlesGroups -16: [ OK ] OptionsAssignerTest.HandlesGroups (0 ms) +16: [ OK ] OptionsAssignerTest.HandlesGroups (1 ms) 16: [ RUN ] OptionsAssignerTest.HandlesSections 16: [ OK ] OptionsAssignerTest.HandlesSections (0 ms) 16: [ RUN ] OptionsAssignerTest.HandlesMultipleSources @@ -8060,7 +8080,7 @@ 16: [ RUN ] OptionsAssignerIntegerTest.HandlesInvalidValue 16: [ OK ] OptionsAssignerIntegerTest.HandlesInvalidValue (0 ms) 16: [ RUN ] OptionsAssignerIntegerTest.HandlesOverflow -16: [ OK ] OptionsAssignerIntegerTest.HandlesOverflow (1 ms) +16: [ OK ] OptionsAssignerIntegerTest.HandlesOverflow (0 ms) 16: [ RUN ] OptionsAssignerIntegerTest.StoresDefaultValue 16: [ OK ] OptionsAssignerIntegerTest.StoresDefaultValue (0 ms) 16: [ RUN ] OptionsAssignerIntegerTest.StoresDefaultValueIfSet @@ -8079,7 +8099,7 @@ 16: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue (0 ms) 16: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment 16: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment (0 ms) -16: [----------] 13 tests from OptionsAssignerIntegerTest (1 ms total) +16: [----------] 13 tests from OptionsAssignerIntegerTest (0 ms total) 16: 16: [----------] 5 tests from OptionsAssignerDoubleTest 16: [ RUN ] OptionsAssignerDoubleTest.StoresSingleValue @@ -8087,12 +8107,12 @@ 16: [ RUN ] OptionsAssignerDoubleTest.StoresValueFromFloat 16: [ OK ] OptionsAssignerDoubleTest.StoresValueFromFloat (0 ms) 16: [ RUN ] OptionsAssignerDoubleTest.HandlesEmptyValue -16: [ OK ] OptionsAssignerDoubleTest.HandlesEmptyValue (1 ms) +16: [ OK ] OptionsAssignerDoubleTest.HandlesEmptyValue (0 ms) 16: [ RUN ] OptionsAssignerDoubleTest.HandlesPreSetScaleValue 16: [ OK ] OptionsAssignerDoubleTest.HandlesPreSetScaleValue (0 ms) 16: [ RUN ] OptionsAssignerDoubleTest.HandlesPostSetScaleValue 16: [ OK ] OptionsAssignerDoubleTest.HandlesPostSetScaleValue (0 ms) -16: [----------] 5 tests from OptionsAssignerDoubleTest (1 ms total) +16: [----------] 5 tests from OptionsAssignerDoubleTest (0 ms total) 16: 16: [----------] 9 tests from OptionsAssignerStringTest 16: [ RUN ] OptionsAssignerStringTest.StoresSingleValue @@ -8147,7 +8167,7 @@ 16: [ OK ] RepeatingOptionSectionTest.HandlesUnsetOptionWithExplicitDefault (0 ms) 16: [ RUN ] RepeatingOptionSectionTest.HandlesNestedSections 16: [ OK ] RepeatingOptionSectionTest.HandlesNestedSections (0 ms) -16: [----------] 8 tests from RepeatingOptionSectionTest (0 ms total) +16: [----------] 8 tests from RepeatingOptionSectionTest (1 ms total) 16: 16: [----------] 1 test from TimeUnitManagerTest 16: [ RUN ] TimeUnitManagerTest.BasicOperations @@ -8163,7 +8183,7 @@ 16: [ OK ] TimeUnitBehaviorTest.ScalesUserInputWithMultipleSources (0 ms) 16: [ RUN ] TimeUnitBehaviorTest.TimeUnitOptionWorks 16: [ OK ] TimeUnitBehaviorTest.TimeUnitOptionWorks (0 ms) -16: [----------] 4 tests from TimeUnitBehaviorTest (1 ms total) +16: [----------] 4 tests from TimeUnitBehaviorTest (0 ms total) 16: 16: [----------] 2 tests from TreeValueSupportAssignTest 16: [ RUN ] TreeValueSupportAssignTest.AssignsFromTree @@ -8192,9 +8212,9 @@ 16: 16: [----------] 6 tests from TreeValueSupportAdjustTest 16: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultValues -16: [ OK ] TreeValueSupportAdjustTest.FillsDefaultValues (0 ms) +16: [ OK ] TreeValueSupportAdjustTest.FillsDefaultValues (1 ms) 16: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultVectorValues -16: [ OK ] TreeValueSupportAdjustTest.FillsDefaultVectorValues (1 ms) +16: [ OK ] TreeValueSupportAdjustTest.FillsDefaultVectorValues (0 ms) 16: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultObjectValues 16: [ OK ] TreeValueSupportAdjustTest.FillsDefaultObjectValues (0 ms) 16: [ RUN ] TreeValueSupportAdjustTest.NormalizesValues @@ -8215,19 +8235,19 @@ 16: [ RUN ] TreeValueSupportTest.SupportsStringOption 16: [ OK ] TreeValueSupportTest.SupportsStringOption (0 ms) 16: [ RUN ] TreeValueSupportTest.SupportsFloatOption -16: [ OK ] TreeValueSupportTest.SupportsFloatOption (0 ms) +16: [ OK ] TreeValueSupportTest.SupportsFloatOption (1 ms) 16: [ RUN ] TreeValueSupportTest.SupportsDoubleOption 16: [ OK ] TreeValueSupportTest.SupportsDoubleOption (0 ms) 16: [ RUN ] TreeValueSupportTest.SupportsEnumIntOption -16: [ OK ] TreeValueSupportTest.SupportsEnumIntOption (1 ms) +16: [ OK ] TreeValueSupportTest.SupportsEnumIntOption (0 ms) 16: [ RUN ] TreeValueSupportTest.SupportsEnumOption 16: [ OK ] TreeValueSupportTest.SupportsEnumOption (0 ms) -16: [----------] 8 tests from TreeValueSupportTest (3 ms total) +16: [----------] 8 tests from TreeValueSupportTest (2 ms total) 16: 16: [----------] Global test environment tear-down -16: [==========] 110 tests from 18 test cases ran. (10 ms total) +16: [==========] 110 tests from 18 test cases ran. (9 ms total) 16: [ PASSED ] 110 tests. -16/40 Test #16: OptionsUnitTests ................. Passed 0.04 sec +16/40 Test #16: OptionsUnitTests ................. Passed 0.03 sec test 17 Start 17: RandomUnitTests @@ -8237,14 +8257,14 @@ 17: [----------] Global test environment set-up. 17: [----------] 4 tests from ExponentialDistributionTest 17: [ RUN ] ExponentialDistributionTest.Output -17: [ OK ] ExponentialDistributionTest.Output (0 ms) +17: [ OK ] ExponentialDistributionTest.Output (1 ms) 17: [ RUN ] ExponentialDistributionTest.Logical 17: [ OK ] ExponentialDistributionTest.Logical (0 ms) 17: [ RUN ] ExponentialDistributionTest.Reset 17: [ OK ] ExponentialDistributionTest.Reset (0 ms) 17: [ RUN ] ExponentialDistributionTest.AltParam 17: [ OK ] ExponentialDistributionTest.AltParam (0 ms) -17: [----------] 4 tests from ExponentialDistributionTest (0 ms total) +17: [----------] 4 tests from ExponentialDistributionTest (1 ms total) 17: 17: [----------] 4 tests from GammaDistributionTest 17: [ RUN ] GammaDistributionTest.Output @@ -8259,19 +8279,19 @@ 17: 17: [----------] 4 tests from NormalDistributionTest 17: [ RUN ] NormalDistributionTest.Output -17: [ OK ] NormalDistributionTest.Output (1 ms) +17: [ OK ] NormalDistributionTest.Output (0 ms) 17: [ RUN ] NormalDistributionTest.Logical 17: [ OK ] NormalDistributionTest.Logical (0 ms) 17: [ RUN ] NormalDistributionTest.Reset 17: [ OK ] NormalDistributionTest.Reset (0 ms) 17: [ RUN ] NormalDistributionTest.AltParam 17: [ OK ] NormalDistributionTest.AltParam (0 ms) -17: [----------] 4 tests from NormalDistributionTest (1 ms total) +17: [----------] 4 tests from NormalDistributionTest (0 ms total) 17: 17: [----------] 1 test from SeedTest 17: [ RUN ] SeedTest.makeRandomSeed 17: [ OK ] SeedTest.makeRandomSeed (0 ms) -17: [----------] 1 test from SeedTest (0 ms total) +17: [----------] 1 test from SeedTest (1 ms total) 17: 17: [----------] 6 tests from TabulatedNormalDistributionTest 17: [ RUN ] TabulatedNormalDistributionTest.Output14 @@ -8297,7 +8317,7 @@ 17: [ RUN ] ThreeFry2x64Test.Logical 17: [ OK ] ThreeFry2x64Test.Logical (0 ms) 17: [ RUN ] ThreeFry2x64Test.InternalCounterSequence -17: [ OK ] ThreeFry2x64Test.InternalCounterSequence (1 ms) +17: [ OK ] ThreeFry2x64Test.InternalCounterSequence (0 ms) 17: [ RUN ] ThreeFry2x64Test.Reseed 17: [ OK ] ThreeFry2x64Test.Reseed (0 ms) 17: [ RUN ] ThreeFry2x64Test.Discard @@ -8306,7 +8326,7 @@ 17: [ OK ] ThreeFry2x64Test.InvalidCounter (0 ms) 17: [ RUN ] ThreeFry2x64Test.ExhaustInternalCounter 17: [ OK ] ThreeFry2x64Test.ExhaustInternalCounter (0 ms) -17: [----------] 6 tests from ThreeFry2x64Test (1 ms total) +17: [----------] 6 tests from ThreeFry2x64Test (0 ms total) 17: 17: [----------] 4 tests from UniformIntDistributionTest 17: [ RUN ] UniformIntDistributionTest.Output @@ -8321,7 +8341,7 @@ 17: 17: [----------] 5 tests from UniformRealDistributionTest 17: [ RUN ] UniformRealDistributionTest.GenerateCanonical -17: [ OK ] UniformRealDistributionTest.GenerateCanonical (0 ms) +17: [ OK ] UniformRealDistributionTest.GenerateCanonical (1 ms) 17: [ RUN ] UniformRealDistributionTest.Output 17: [ OK ] UniformRealDistributionTest.Output (0 ms) 17: [ RUN ] UniformRealDistributionTest.Logical @@ -8330,11 +8350,11 @@ 17: [ OK ] UniformRealDistributionTest.Reset (0 ms) 17: [ RUN ] UniformRealDistributionTest.AltParam 17: [ OK ] UniformRealDistributionTest.AltParam (0 ms) -17: [----------] 5 tests from UniformRealDistributionTest (0 ms total) +17: [----------] 5 tests from UniformRealDistributionTest (1 ms total) 17: 17: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/0 -17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/0 (1 ms) +17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/0 (0 ms) 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/1 17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/1 (0 ms) 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/2 @@ -8342,7 +8362,7 @@ 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 (0 ms) 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 -17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 (0 ms) +17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 (1 ms) 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 (0 ms) 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 @@ -8366,11 +8386,11 @@ 18: [----------] Global test environment set-up. 18: [----------] 1 test from RestraintManager 18: [ RUN ] RestraintManager.restraintList -18: [ OK ] RestraintManager.restraintList (1 ms) -18: [----------] 1 test from RestraintManager (1 ms total) +18: [ OK ] RestraintManager.restraintList (0 ms) +18: [----------] 1 test from RestraintManager (0 ms total) 18: 18: [----------] Global test environment tear-down -18: [==========] 1 test from 1 test case ran. (1 ms total) +18: [==========] 1 test from 1 test case ran. (0 ms total) 18: [ PASSED ] 1 test. 18/40 Test #18: RestraintTests ................... Passed 0.02 sec test 19 @@ -8382,26 +8402,26 @@ 19: [----------] Global test environment set-up. 19: [----------] 10 tests from SplineTableTest/0, where TypeParam = gmx::QuadraticSplineTable 19: [ RUN ] SplineTableTest/0.HandlesIncorrectInput -19: [ OK ] SplineTableTest/0.HandlesIncorrectInput (4 ms) +19: [ OK ] SplineTableTest/0.HandlesIncorrectInput (3 ms) 19: [ RUN ] SplineTableTest/0.Sinc -19: [ OK ] SplineTableTest/0.Sinc (1 ms) +19: [ OK ] SplineTableTest/0.Sinc (2 ms) 19: [ RUN ] SplineTableTest/0.LJ12 -19: [ OK ] SplineTableTest/0.LJ12 (33 ms) +19: [ OK ] SplineTableTest/0.LJ12 (39 ms) 19: [ RUN ] SplineTableTest/0.PmeCorrection -19: [ OK ] SplineTableTest/0.PmeCorrection (3 ms) +19: [ OK ] SplineTableTest/0.PmeCorrection (2 ms) 19: [ RUN ] SplineTableTest/0.HandlesIncorrectNumericalInput 19: [ OK ] SplineTableTest/0.HandlesIncorrectNumericalInput (1 ms) 19: [ RUN ] SplineTableTest/0.NumericalInputPmeCorr 19: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (2 ms) 19: [ RUN ] SplineTableTest/0.TwoFunctions -19: [ OK ] SplineTableTest/0.TwoFunctions (65 ms) +19: [ OK ] SplineTableTest/0.TwoFunctions (81 ms) 19: [ RUN ] SplineTableTest/0.ThreeFunctions -19: [ OK ] SplineTableTest/0.ThreeFunctions (70 ms) +19: [ OK ] SplineTableTest/0.ThreeFunctions (73 ms) 19: [ RUN ] SplineTableTest/0.Simd 19: [ OK ] SplineTableTest/0.Simd (17 ms) 19: [ RUN ] SplineTableTest/0.SimdTwoFunctions -19: [ OK ] SplineTableTest/0.SimdTwoFunctions (64 ms) -19: [----------] 10 tests from SplineTableTest/0 (261 ms total) +19: [ OK ] SplineTableTest/0.SimdTwoFunctions (66 ms) +19: [----------] 10 tests from SplineTableTest/0 (287 ms total) 19: 19: [----------] 10 tests from SplineTableTest/1, where TypeParam = gmx::CubicSplineTable 19: [ RUN ] SplineTableTest/1.HandlesIncorrectInput @@ -8409,27 +8429,27 @@ 19: [ RUN ] SplineTableTest/1.Sinc 19: [ OK ] SplineTableTest/1.Sinc (1 ms) 19: [ RUN ] SplineTableTest/1.LJ12 -19: [ OK ] SplineTableTest/1.LJ12 (6 ms) +19: [ OK ] SplineTableTest/1.LJ12 (5 ms) 19: [ RUN ] SplineTableTest/1.PmeCorrection -19: [ OK ] SplineTableTest/1.PmeCorrection (3 ms) +19: [ OK ] SplineTableTest/1.PmeCorrection (2 ms) 19: [ RUN ] SplineTableTest/1.HandlesIncorrectNumericalInput -19: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (0 ms) +19: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (1 ms) 19: [ RUN ] SplineTableTest/1.NumericalInputPmeCorr -19: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (3 ms) +19: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (2 ms) 19: [ RUN ] SplineTableTest/1.TwoFunctions 19: [ OK ] SplineTableTest/1.TwoFunctions (10 ms) 19: [ RUN ] SplineTableTest/1.ThreeFunctions 19: [ OK ] SplineTableTest/1.ThreeFunctions (12 ms) 19: [ RUN ] SplineTableTest/1.Simd -19: [ OK ] SplineTableTest/1.Simd (4 ms) +19: [ OK ] SplineTableTest/1.Simd (3 ms) 19: [ RUN ] SplineTableTest/1.SimdTwoFunctions -19: [ OK ] SplineTableTest/1.SimdTwoFunctions (10 ms) -19: [----------] 10 tests from SplineTableTest/1 (52 ms total) +19: [ OK ] SplineTableTest/1.SimdTwoFunctions (11 ms) +19: [----------] 10 tests from SplineTableTest/1 (51 ms total) 19: 19: [----------] Global test environment tear-down -19: [==========] 20 tests from 2 test cases ran. (313 ms total) +19: [==========] 20 tests from 2 test cases ran. (338 ms total) 19: [ PASSED ] 20 tests. -19/40 Test #19: TableUnitTests ................... Passed 0.33 sec +19/40 Test #19: TableUnitTests ................... Passed 0.36 sec test 20 Start 20: TaskAssignmentUnitTests @@ -8474,7 +8494,7 @@ 21: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment 21: [ OK ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment -21: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (1 ms) +21: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment 21: [ OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/1.Move @@ -8533,7 +8553,7 @@ 21: [ OK ] AllocatorTest/5.Move (0 ms) 21: [ RUN ] AllocatorTest/5.StatelessAllocatorUsesNoMemory 21: [ OK ] AllocatorTest/5.StatelessAllocatorUsesNoMemory (0 ms) -21: [----------] 5 tests from AllocatorTest/5 (1 ms total) +21: [----------] 5 tests from AllocatorTest/5 (0 ms total) 21: 21: [----------] 1 test from AllocatorUntypedTest 21: [ RUN ] AllocatorUntypedTest.Comparison @@ -8821,7 +8841,7 @@ 21: [ OK ] ArrayRefTest/12.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/12.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/12.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/12 (3 ms total) +21: [----------] 9 tests from ArrayRefTest/12 (0 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/13, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/13.MakeWithAssignmentWorks @@ -8842,7 +8862,7 @@ 21: [ OK ] ArrayRefTest/13.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/13.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/13.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/13 (0 ms total) +21: [----------] 9 tests from ArrayRefTest/13 (1 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/14, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/14.MakeWithAssignmentWorks @@ -8884,7 +8904,7 @@ 21: [ OK ] ArrayRefTest/15.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/15.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/15.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/15 (0 ms total) +21: [----------] 9 tests from ArrayRefTest/15 (3 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/16, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/16.MakeWithAssignmentWorks @@ -8905,7 +8925,7 @@ 21: [ OK ] ArrayRefTest/16.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/16.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/16.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/16 (1 ms total) +21: [----------] 9 tests from ArrayRefTest/16 (0 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/17, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/17.MakeWithAssignmentWorks @@ -8947,7 +8967,7 @@ 21: [ OK ] ArrayRefTest/18.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/18.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/18.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/18 (0 ms total) +21: [----------] 9 tests from ArrayRefTest/18 (1 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/19, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/19.MakeWithAssignmentWorks @@ -8976,9 +8996,9 @@ 21: [ RUN ] KeyValueTreeSerializerTest.SimpleObject 21: [ OK ] KeyValueTreeSerializerTest.SimpleObject (0 ms) 21: [ RUN ] KeyValueTreeSerializerTest.ObjectWithArrays -21: [ OK ] KeyValueTreeSerializerTest.ObjectWithArrays (1 ms) +21: [ OK ] KeyValueTreeSerializerTest.ObjectWithArrays (0 ms) 21: [ RUN ] KeyValueTreeSerializerTest.ObjectWithObjects -21: [ OK ] KeyValueTreeSerializerTest.ObjectWithObjects (0 ms) +21: [ OK ] KeyValueTreeSerializerTest.ObjectWithObjects (1 ms) 21: [----------] 4 tests from KeyValueTreeSerializerTest (1 ms total) 21: 21: [----------] 6 tests from TreeValueTransformTest @@ -8999,27 +9019,27 @@ 21: [----------] 1 test from TreeValueTransformErrorTest 21: [ RUN ] TreeValueTransformErrorTest.ConversionError 21: [ OK ] TreeValueTransformErrorTest.ConversionError (0 ms) -21: [----------] 1 test from TreeValueTransformErrorTest (0 ms total) +21: [----------] 1 test from TreeValueTransformErrorTest (1 ms total) 21: 21: [----------] 2 tests from RegexBasicTest 21: [ RUN ] RegexBasicTest.BasicMatchesWorkWhenSupported -21: [ OK ] RegexBasicTest.BasicMatchesWorkWhenSupported (1 ms) +21: [ OK ] RegexBasicTest.BasicMatchesWorkWhenSupported (0 ms) 21: [ RUN ] RegexBasicTest.MatchesForCharacterClassesWorkWhenSupported 21: [ OK ] RegexBasicTest.MatchesForCharacterClassesWorkWhenSupported (0 ms) -21: [----------] 2 tests from RegexBasicTest (1 ms total) +21: [----------] 2 tests from RegexBasicTest (0 ms total) 21: 21: [----------] 5 tests from LoggerTest 21: [ RUN ] LoggerTest.EmptyLoggerWorks 21: [ OK ] LoggerTest.EmptyLoggerWorks (0 ms) 21: [ RUN ] LoggerTest.LogsToStream -21: [ OK ] LoggerTest.LogsToStream (0 ms) +21: [ OK ] LoggerTest.LogsToStream (1 ms) 21: [ RUN ] LoggerTest.LogsToFile 21: [ OK ] LoggerTest.LogsToFile (1 ms) 21: [ RUN ] LoggerTest.LevelFilteringWorks -21: [ OK ] LoggerTest.LevelFilteringWorks (0 ms) +21: [ OK ] LoggerTest.LevelFilteringWorks (1 ms) 21: [ RUN ] LoggerTest.LogsToMultipleStreams 21: [ OK ] LoggerTest.LogsToMultipleStreams (0 ms) -21: [----------] 5 tests from LoggerTest (1 ms total) +21: [----------] 5 tests from LoggerTest (3 ms total) 21: 21: [----------] 4 tests from MutexBasicTest 21: [ RUN ] MutexBasicTest.CanBeMade @@ -9034,12 +9054,12 @@ 21: 21: [----------] 3 tests from MutexTaskTest 21: [ RUN ] MutexTaskTest.MutualExclusionWorksWithLock -21: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (2 ms) +21: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (0 ms) 21: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread -21: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (0 ms) +21: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (1 ms) 21: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread 21: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread (0 ms) -21: [----------] 3 tests from MutexTaskTest (2 ms total) +21: [----------] 3 tests from MutexTaskTest (1 ms total) 21: 21: [----------] 4 tests from PathTest 21: [ RUN ] PathTest.StripSourcePrefixWorks @@ -9073,7 +9093,7 @@ 21: [ RUN ] StringUtilityTest.SplitDelimitedString 21: [ OK ] StringUtilityTest.SplitDelimitedString (0 ms) 21: [ RUN ] StringUtilityTest.SplitAndTrimDelimitedString -21: [ OK ] StringUtilityTest.SplitAndTrimDelimitedString (0 ms) +21: [ OK ] StringUtilityTest.SplitAndTrimDelimitedString (1 ms) 21: [----------] 7 tests from StringUtilityTest (1 ms total) 21: 21: [----------] 2 tests from FormatStringTest @@ -9140,9 +9160,9 @@ 21: [ RUN ] TextWriterTest.WritesLines 21: [ OK ] TextWriterTest.WritesLines (0 ms) 21: [ RUN ] TextWriterTest.WritesLinesInParts -21: [ OK ] TextWriterTest.WritesLinesInParts (0 ms) +21: [ OK ] TextWriterTest.WritesLinesInParts (1 ms) 21: [ RUN ] TextWriterTest.WritesWrappedLines -21: [ OK ] TextWriterTest.WritesWrappedLines (1 ms) +21: [ OK ] TextWriterTest.WritesWrappedLines (0 ms) 21: [ RUN ] TextWriterTest.WritesLinesInPartsWithWrapper 21: [ OK ] TextWriterTest.WritesLinesInPartsWithWrapper (0 ms) 21: [ RUN ] TextWriterTest.TracksNewlines @@ -9223,13 +9243,13 @@ 21: [ OK ] BitmaskTest128_9_78/BitmaskTest128.ToHex/0 (0 ms) 21: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.ToHex/1 21: [ OK ] BitmaskTest128_9_78/BitmaskTest128.ToHex/1 (0 ms) -21: [----------] 12 tests from BitmaskTest128_9_78/BitmaskTest128 (0 ms total) +21: [----------] 12 tests from BitmaskTest128_9_78/BitmaskTest128 (1 ms total) 21: 21: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 -21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (2 ms) +21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (1 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 -21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 (0 ms) +21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 (1 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 (0 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 @@ -9237,7 +9257,7 @@ 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (0 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 -21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 (0 ms) +21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 (1 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 (0 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 @@ -9254,19 +9274,19 @@ 21: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/2 21: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/2 (0 ms) 21: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/3 -21: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/3 (1 ms) +21: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/3 (0 ms) 21: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/4 21: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/4 (0 ms) 21: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5 21: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5 (0 ms) 21: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6 -21: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6 (0 ms) +21: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6 (1 ms) 21: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest (1 ms total) 21: 21: [----------] Global test environment tear-down -21: [==========] 325 tests from 52 test cases ran. (20 ms total) +21: [==========] 325 tests from 52 test cases ran. (23 ms total) 21: [ PASSED ] 325 tests. -21/40 Test #21: UtilityUnitTests ................. Passed 0.05 sec +21/40 Test #21: UtilityUnitTests ................. Passed 0.06 sec test 22 Start 22: UtilityMpiUnitTests @@ -9276,15 +9296,15 @@ 22: [----------] Global test environment set-up. 22: [----------] 2 tests from PhysicalNodeCommunicatorTest 22: [ RUN ] PhysicalNodeCommunicatorTest.CanConstruct -22: [ OK ] PhysicalNodeCommunicatorTest.CanConstruct (20 ms) +22: [ OK ] PhysicalNodeCommunicatorTest.CanConstruct (13 ms) 22: [ RUN ] PhysicalNodeCommunicatorTest.CanCallBarrier -22: [ OK ] PhysicalNodeCommunicatorTest.CanCallBarrier (24 ms) -22: [----------] 2 tests from PhysicalNodeCommunicatorTest (44 ms total) +22: [ OK ] PhysicalNodeCommunicatorTest.CanCallBarrier (28 ms) +22: [----------] 2 tests from PhysicalNodeCommunicatorTest (41 ms total) 22: 22: [----------] Global test environment tear-down -22: [==========] 2 tests from 1 test case ran. (44 ms total) +22: [==========] 2 tests from 1 test case ran. (42 ms total) 22: [ PASSED ] 2 tests. -22/40 Test #22: UtilityMpiUnitTests .............. Passed 0.07 sec +22/40 Test #22: UtilityMpiUnitTests .............. Passed 0.06 sec test 23 Start 23: FileIOTests @@ -9296,8 +9316,8 @@ 23: [ RUN ] FileMD5Test.CanComputeMD5 23: [ OK ] FileMD5Test.CanComputeMD5 (1 ms) 23: [ RUN ] FileMD5Test.ReturnsErrorIfFileModeIsWrong -23: [ OK ] FileMD5Test.ReturnsErrorIfFileModeIsWrong (1 ms) -23: [----------] 2 tests from FileMD5Test (2 ms total) +23: [ OK ] FileMD5Test.ReturnsErrorIfFileModeIsWrong (0 ms) +23: [----------] 2 tests from FileMD5Test (1 ms total) 23: 23: [----------] 9 tests from ReadTest 23: [ RUN ] ReadTest.get_eint_ReadsInteger @@ -9352,24 +9372,24 @@ 23: 23: [----------] 2 tests from TngTest 23: [ RUN ] TngTest.CanOpenTngFile -23: [ OK ] TngTest.CanOpenTngFile (0 ms) +23: [ OK ] TngTest.CanOpenTngFile (1 ms) 23: [ RUN ] TngTest.CloseBeforeOpenIsNotFatal 23: [ OK ] TngTest.CloseBeforeOpenIsNotFatal (0 ms) -23: [----------] 2 tests from TngTest (0 ms total) +23: [----------] 2 tests from TngTest (1 ms total) 23: 23: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 (1 ms) 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 -23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (1 ms) +23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (0 ms) 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 -23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (7 ms) +23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (4 ms) 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (1 ms) -23: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (10 ms total) +23: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (6 ms total) 23: 23: [----------] Global test environment tear-down -23: [==========] 17 tests from 4 test cases ran. (12 ms total) +23: [==========] 17 tests from 4 test cases ran. (8 ms total) 23: [ PASSED ] 17 tests. 23/40 Test #23: FileIOTests ...................... Passed 0.03 sec test 24 @@ -9393,7 +9413,7 @@ 24: [----------] 5 tests from PullTest (0 ms total) 24: 24: [----------] Global test environment tear-down -24: [==========] 5 tests from 1 test case ran. (1 ms total) +24: [==========] 5 tests from 1 test case ran. (0 ms total) 24: [ PASSED ] 5 tests. 24/40 Test #24: PullTest ......................... Passed 0.02 sec test 25 @@ -9415,28 +9435,28 @@ 25: 25: [----------] 8 tests from WithParameters/BiasTest 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/0 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (0 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (1 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/1 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/1 (1 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/1 (0 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/2 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/2 (1 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/2 (0 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/3 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (0 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (1 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/4 25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/4 (0 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/5 25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/5 (1 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/6 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (0 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (1 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/7 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/7 (1 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/7 (0 ms) 25: [----------] 8 tests from WithParameters/BiasTest (5 ms total) 25: 25: [----------] 2 tests from WithParameters/BiasStateTest 25: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/0 -25: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/0 (0 ms) +25: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/0 (1 ms) 25: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/1 -25: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/1 (1 ms) +25: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/1 (0 ms) 25: [----------] 2 tests from WithParameters/BiasStateTest (1 ms total) 25: 25: [----------] Global test environment tear-down @@ -9469,7 +9489,7 @@ 26: [ OK ] SimdBootstrapTest.simd4LoadU (0 ms) 26: [ RUN ] SimdBootstrapTest.simd4StoreU 26: [ OK ] SimdBootstrapTest.simd4StoreU (0 ms) -26: [----------] 9 tests from SimdBootstrapTest (1 ms total) +26: [----------] 9 tests from SimdBootstrapTest (0 ms total) 26: 26: [----------] 1 test from SimdTest 26: [ RUN ] SimdTest.GmxAligned @@ -9561,7 +9581,7 @@ 26: [ OK ] SimdFloatingpointTest.cvtFloat2Double (0 ms) 26: [ RUN ] SimdFloatingpointTest.cvtDouble2Float 26: [ OK ] SimdFloatingpointTest.cvtDouble2Float (0 ms) -26: [----------] 42 tests from SimdFloatingpointTest (1 ms total) +26: [----------] 42 tests from SimdFloatingpointTest (0 ms total) 26: 26: [----------] 16 tests from SimdFloatingpointUtilTest 26: [ RUN ] SimdFloatingpointUtilTest.gatherLoadTranspose4 @@ -9596,7 +9616,7 @@ 26: [ OK ] SimdFloatingpointUtilTest.load4DuplicateN (0 ms) 26: [ RUN ] SimdFloatingpointUtilTest.loadU4NOffset 26: [ OK ] SimdFloatingpointUtilTest.loadU4NOffset (0 ms) -26: [----------] 16 tests from SimdFloatingpointUtilTest (0 ms total) +26: [----------] 16 tests from SimdFloatingpointUtilTest (1 ms total) 26: 26: [----------] 3 tests from SimdVectorOperationsTest 26: [ RUN ] SimdVectorOperationsTest.iprod @@ -9619,9 +9639,9 @@ 26: [ RUN ] SimdMathTest.sqrt 26: [ OK ] SimdMathTest.sqrt (1 ms) 26: [ RUN ] SimdMathTest.sqrtUnsafe -26: [ OK ] SimdMathTest.sqrtUnsafe (2 ms) +26: [ OK ] SimdMathTest.sqrtUnsafe (0 ms) 26: [ RUN ] SimdMathTest.inv -26: [ OK ] SimdMathTest.inv (0 ms) +26: [ OK ] SimdMathTest.inv (1 ms) 26: [ RUN ] SimdMathTest.maskzInv 26: [ OK ] SimdMathTest.maskzInv (0 ms) 26: [ RUN ] SimdMathTest.log @@ -9635,15 +9655,15 @@ 26: [ RUN ] SimdMathTest.expUnsafe 26: [ OK ] SimdMathTest.expUnsafe (1 ms) 26: [ RUN ] SimdMathTest.erf -26: [ OK ] SimdMathTest.erf (2 ms) +26: [ OK ] SimdMathTest.erf (1 ms) 26: [ RUN ] SimdMathTest.erfc -26: [ OK ] SimdMathTest.erfc (2 ms) +26: [ OK ] SimdMathTest.erfc (1 ms) 26: [ RUN ] SimdMathTest.sin -26: [ OK ] SimdMathTest.sin (1 ms) +26: [ OK ] SimdMathTest.sin (2 ms) 26: [ RUN ] SimdMathTest.cos 26: [ OK ] SimdMathTest.cos (2 ms) 26: [ RUN ] SimdMathTest.tan -26: [ OK ] SimdMathTest.tan (9 ms) +26: [ OK ] SimdMathTest.tan (8 ms) 26: [ RUN ] SimdMathTest.asin 26: [ OK ] SimdMathTest.asin (1 ms) 26: [ RUN ] SimdMathTest.acos @@ -9671,23 +9691,23 @@ 26: [ RUN ] SimdMathTest.exp2SingleAccuracy 26: [ OK ] SimdMathTest.exp2SingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.exp2SingleAccuracyUnsafe -26: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (1 ms) +26: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (0 ms) 26: [ RUN ] SimdMathTest.expSingleAccuracy -26: [ OK ] SimdMathTest.expSingleAccuracy (1 ms) +26: [ OK ] SimdMathTest.expSingleAccuracy (4 ms) 26: [ RUN ] SimdMathTest.expSingleAccuracyUnsafe -26: [ OK ] SimdMathTest.expSingleAccuracyUnsafe (1 ms) +26: [ OK ] SimdMathTest.expSingleAccuracyUnsafe (0 ms) 26: [ RUN ] SimdMathTest.erfSingleAccuracy -26: [ OK ] SimdMathTest.erfSingleAccuracy (1 ms) +26: [ OK ] SimdMathTest.erfSingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.erfcSingleAccuracy -26: [ OK ] SimdMathTest.erfcSingleAccuracy (2 ms) +26: [ OK ] SimdMathTest.erfcSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.sinSingleAccuracy 26: [ OK ] SimdMathTest.sinSingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.cosSingleAccuracy 26: [ OK ] SimdMathTest.cosSingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.tanSingleAccuracy -26: [ OK ] SimdMathTest.tanSingleAccuracy (9 ms) +26: [ OK ] SimdMathTest.tanSingleAccuracy (8 ms) 26: [ RUN ] SimdMathTest.asinSingleAccuracy -26: [ OK ] SimdMathTest.asinSingleAccuracy (1 ms) +26: [ OK ] SimdMathTest.asinSingleAccuracy (0 ms) 26: [ RUN ] SimdMathTest.acosSingleAccuracy 26: [ OK ] SimdMathTest.acosSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.atanSingleAccuracy @@ -9734,12 +9754,12 @@ 26: 26: [----------] 3 tests from ArrayRefTest/3, where TypeParam = gmx::ArrayRef 26: [ RUN ] ArrayRefTest/3.ConstructFromPointersWorks -26: [ OK ] ArrayRefTest/3.ConstructFromPointersWorks (0 ms) +26: [ OK ] ArrayRefTest/3.ConstructFromPointersWorks (1 ms) 26: [ RUN ] ArrayRefTest/3.ConstructFromArrayRefWorks 26: [ OK ] ArrayRefTest/3.ConstructFromArrayRefWorks (0 ms) 26: [ RUN ] ArrayRefTest/3.ConstructFromArrayWorks 26: [ OK ] ArrayRefTest/3.ConstructFromArrayWorks (0 ms) -26: [----------] 3 tests from ArrayRefTest/3 (0 ms total) +26: [----------] 3 tests from ArrayRefTest/3 (1 ms total) 26: 26: [----------] 1 test from ArrayRefReadWriteTest/0, where TypeParam = gmx::ArrayRef 26: [ RUN ] ArrayRefReadWriteTest/0.Assignment @@ -9838,7 +9858,7 @@ 26: [ RUN ] Simd4FloatingpointTest.or 26: [ OK ] Simd4FloatingpointTest.or (0 ms) 26: [ RUN ] Simd4FloatingpointTest.xor -26: [ OK ] Simd4FloatingpointTest.xor (1 ms) +26: [ OK ] Simd4FloatingpointTest.xor (0 ms) 26: [ RUN ] Simd4FloatingpointTest.andNot 26: [ OK ] Simd4FloatingpointTest.andNot (0 ms) 26: [ RUN ] Simd4FloatingpointTest.max @@ -9875,7 +9895,7 @@ 26: [ OK ] Simd4FloatingpointTest.dotProduct (0 ms) 26: [ RUN ] Simd4FloatingpointTest.transpose 26: [ OK ] Simd4FloatingpointTest.transpose (0 ms) -26: [----------] 32 tests from Simd4FloatingpointTest (1 ms total) +26: [----------] 32 tests from Simd4FloatingpointTest (0 ms total) 26: 26: [----------] 1 test from Simd4VectorOperationsTest 26: [ RUN ] Simd4VectorOperationsTest.norm2 @@ -9884,10 +9904,10 @@ 26: 26: [----------] 2 tests from Simd4MathTest 26: [ RUN ] Simd4MathTest.invsqrt -26: [ OK ] Simd4MathTest.invsqrt (0 ms) +26: [ OK ] Simd4MathTest.invsqrt (1 ms) 26: [ RUN ] Simd4MathTest.invsqrtSingleaccuracy -26: [ OK ] Simd4MathTest.invsqrtSingleaccuracy (1 ms) -26: [----------] 2 tests from Simd4MathTest (1 ms total) +26: [ OK ] Simd4MathTest.invsqrtSingleaccuracy (0 ms) +26: [----------] 2 tests from Simd4MathTest (2 ms total) 26: 26: [----------] 41 tests from SimdScalarTest 26: [ RUN ] SimdScalarTest.load @@ -9972,7 +9992,7 @@ 26: [ OK ] SimdScalarTest.cvtIB2B (0 ms) 26: [ RUN ] SimdScalarTest.expandScalarsToTriplets 26: [ OK ] SimdScalarTest.expandScalarsToTriplets (0 ms) -26: [----------] 41 tests from SimdScalarTest (2 ms total) +26: [----------] 41 tests from SimdScalarTest (0 ms total) 26: 26: [----------] 8 tests from SimdScalarUtilTest 26: [ RUN ] SimdScalarUtilTest.gatherLoadTranspose @@ -10068,7 +10088,7 @@ 26: [ OK ] SimdScalarMathTest.pmeForceCorrectionSingleAccuracy (0 ms) 26: [ RUN ] SimdScalarMathTest.pmePotentialCorrectionSingleAccuracy 26: [ OK ] SimdScalarMathTest.pmePotentialCorrectionSingleAccuracy (0 ms) -26: [----------] 37 tests from SimdScalarMathTest (0 ms total) +26: [----------] 37 tests from SimdScalarMathTest (1 ms total) 26: 26: [----------] Global test environment tear-down 26: [==========] 277 tests from 22 test cases ran. (70 ms total) @@ -10103,8 +10123,8 @@ 27: 27: [----------] 1 test from MakeNotNull 27: [ RUN ] MakeNotNull.Works -27: [ OK ] MakeNotNull.Works (0 ms) -27: [----------] 1 test from MakeNotNull (0 ms total) +27: [ OK ] MakeNotNull.Works (1 ms) +27: [----------] 1 test from MakeNotNull (1 ms total) 27: 27: [----------] 1 test from NotNull 27: [ RUN ] NotNull.WorksInContainers @@ -10112,7 +10132,7 @@ 27: [----------] 1 test from NotNull (0 ms total) 27: 27: [----------] Global test environment tear-down -27: [==========] 6 tests from 6 test cases ran. (0 ms total) +27: [==========] 6 tests from 6 test cases ran. (1 ms total) 27: [ PASSED ] 6 tests. 27/40 Test #27: CompatibilityHelpersTests ........ Passed 0.02 sec test 28 @@ -10124,7 +10144,7 @@ 28: [----------] Global test environment set-up. 28: [----------] 5 tests from Entropy 28: [ RUN ] Entropy.Schlitter_300_NoLinear -28: [ OK ] Entropy.Schlitter_300_NoLinear (1 ms) +28: [ OK ] Entropy.Schlitter_300_NoLinear (0 ms) 28: [ RUN ] Entropy.Schlitter_300_Linear 28: [ OK ] Entropy.Schlitter_300_Linear (0 ms) 28: [ RUN ] Entropy.QuasiHarmonic_300_NoLinear @@ -10174,8 +10194,8 @@ 28: Fitting from 1 to 8 ps 28: 28: D[ particles] 8.0000 (+/- 0.0000) 1e-5 cm^2/s -28: [ OK ] MsdTest.oneDimensionalDiffusion (2 ms) -28: [----------] 3 tests from MsdTest (5 ms total) +28: [ OK ] MsdTest.oneDimensionalDiffusion (1 ms) +28: [----------] 3 tests from MsdTest (4 ms total) 28: 28: [----------] 6 tests from NoFatalErrorWhenWritingFrom/GmxTraj 28: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/0 @@ -10185,21 +10205,21 @@ 28: Select a group: trr version: GMX_trn_file (single precision) 28: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 28: Selected 0: 'System' -28: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/0 (2 ms) +28: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/0 (3 ms) 28: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/1 28: Group 0 ( System) has 6 elements 28: Group 1 ( Water) has 6 elements 28: Group 2 ( SOL) has 6 elements 28: Select a group: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 28: Selected 0: 'System' -28: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/1 (7 ms) +28: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/1 (3 ms) 28: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/2 28: Group 0 ( System) has 6 elements 28: Group 1 ( Water) has 6 elements 28: Group 2 ( SOL) has 6 elements 28: Select a group: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 28: Selected 0: 'System' -28: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/2 (3 ms) +28: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/2 (2 ms) 28: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/3 28: Group 0 ( System) has 6 elements 28: Group 1 ( Water) has 6 elements @@ -10207,7 +10227,7 @@ 28: Select a group: Reading frames from gro file '', 6 atoms. 28: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 28: Selected 0: 'System' -28: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/3 (2 ms) +28: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/3 (3 ms) 28: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/4 28: Group 0 ( System) has 6 elements 28: Group 1 ( Water) has 6 elements @@ -10215,7 +10235,7 @@ 28: Select a group: Reading frames from pdb file Reading frame 0 time 0.000 't= 0.00000', 6 atoms 28: Reading frame 1 time 0.000 Last frame 1 time 0.000 28: Selected 0: 'System' -28: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/4 (3 ms) +28: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/4 (2 ms) 28: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/5 28: Group 0 ( System) has 6 elements 28: Group 1 ( Water) has 6 elements @@ -10223,7 +10243,7 @@ 28: Select a group: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 28: Selected 0: 'System' 28: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/5 (2 ms) -28: [----------] 6 tests from NoFatalErrorWhenWritingFrom/GmxTraj (19 ms total) +28: [----------] 6 tests from NoFatalErrorWhenWritingFrom/GmxTraj (15 ms total) 28: 28: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset 28: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/0 @@ -10235,7 +10255,7 @@ 28: 28: Note that major changes are planned in future for trjconv, to improve usability and utility.Select group for output 28: Selected 2: 'SecondWaterMolecule' -28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/0 (9 ms) +28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/0 (6 ms) 28: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/1 28: Will write tng: Trajectory file (tng format) 28: Group 0 ( System) has 6 elements @@ -10283,7 +10303,7 @@ 28: 28: Note that major changes are planned in future for trjconv, to improve usability and utility.Select group for output 28: Selected 2: 'SecondWaterMolecule' -28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/4 (2 ms) +28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/4 (4 ms) 28: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/5 28: Will write tng: Trajectory file (tng format) 28: Group 0 ( System) has 6 elements @@ -10293,8 +10313,8 @@ 28: 28: Note that major changes are planned in future for trjconv, to improve usability and utility.Select group for output 28: Selected 2: 'SecondWaterMolecule' -28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/5 (2 ms) -28: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset (24 ms total) +28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/5 (3 ms) +28: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset (23 ms total) 28: 28: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile 28: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/0 @@ -10306,7 +10326,7 @@ 28: 28: Note that major changes are planned in future for trjconv, to improve usability and utility.Select group for output 28: Selected 2: 'SecondWaterMolecule' -28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/0 (2 ms) +28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/0 (1 ms) 28: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/1 28: Will write trr: Trajectory in portable xdr format 28: Group 0 ( System) has 6 elements @@ -10318,7 +10338,7 @@ 28: 28: Note that major changes are planned in future for trjconv, to improve usability and utility.Select group for output 28: Selected 2: 'SecondWaterMolecule' -28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/1 (1 ms) +28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/1 (2 ms) 28: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/2 28: Will write trr: Trajectory in portable xdr format 28: Group 0 ( System) has 6 elements @@ -10341,7 +10361,7 @@ 28: 28: Note that major changes are planned in future for trjconv, to improve usability and utility.Select group for output 28: Selected 2: 'SecondWaterMolecule' -28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/3 (5 ms) +28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/3 (1 ms) 28: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/4 28: Will write trr: Trajectory in portable xdr format 28: Group 0 ( System) has 6 elements @@ -10365,12 +10385,12 @@ 28: Note that major changes are planned in future for trjconv, to improve usability and utility.Select group for output 28: Selected 2: 'SecondWaterMolecule' 28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/5 (1 ms) -28: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile (11 ms total) +28: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile (8 ms total) 28: 28: [----------] Global test environment tear-down -28: [==========] 26 tests from 5 test cases ran. (60 ms total) +28: [==========] 26 tests from 5 test cases ran. (51 ms total) 28: [ PASSED ] 26 tests. -28/40 Test #28: GmxAnaTest ....................... Passed 0.08 sec +28/40 Test #28: GmxAnaTest ....................... Passed 0.07 sec test 29 Start 29: GmxPreprocessTests @@ -10380,7 +10400,7 @@ 29: [----------] Global test environment set-up. 29: [----------] 4 tests from GenconfTest 29: [ RUN ] GenconfTest.nbox_Works -29: [ OK ] GenconfTest.nbox_Works (1 ms) +29: [ OK ] GenconfTest.nbox_Works (2 ms) 29: [ RUN ] GenconfTest.nbox_norenumber_Works 29: [ OK ] GenconfTest.nbox_norenumber_Works (1 ms) 29: [ RUN ] GenconfTest.nbox_dist_Works @@ -10398,7 +10418,7 @@ 29: center of geometry: 1.733667, 1.477000, 0.905167 29: center of geometry: 1.733667, 1.477000, 0.905167 29: center of geometry: 1.733667, 1.477000, 0.905167 -29: [ OK ] GenconfTest.nbox_rot_Works (2 ms) +29: [ OK ] GenconfTest.nbox_rot_Works (1 ms) 29: [----------] 4 tests from GenconfTest (5 ms total) 29: 29: [----------] 5 tests from InsertMoleculesTest @@ -10430,7 +10450,7 @@ 29: Writing generated configuration to /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoExistingConfiguration_out.gro 29: 29: Output configuration contains 8 atoms in 4 residues -29: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoExistingConfiguration (3 ms) +29: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoExistingConfiguration (4 ms) 29: [ RUN ] InsertMoleculesTest.InsertsMoleculesIntoEmptyBox 29: Initialising inter-atomic distances... 29: @@ -10462,7 +10482,7 @@ 29: Writing generated configuration to /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoEmptyBox_out.gro 29: 29: Output configuration contains 10 atoms in 10 residues -29: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoEmptyBox (2 ms) +29: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoEmptyBox (3 ms) 29: [ RUN ] InsertMoleculesTest.InsertsMoleculesIntoEnlargedBox 29: Reading solute configuration 29: Initialising inter-atomic distances... @@ -10492,7 +10512,7 @@ 29: Writing generated configuration to /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoEnlargedBox_out.gro 29: 29: Output configuration contains 10 atoms in 4 residues -29: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoEnlargedBox (6 ms) +29: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoEnlargedBox (3 ms) 29: [ RUN ] InsertMoleculesTest.InsertsMoleculesWithReplacement 29: Reading solute configuration 29: Initialising inter-atomic distances... @@ -10525,7 +10545,7 @@ 29: Writing generated configuration to /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesWithReplacement_out.gro 29: 29: Output configuration contains 632 atoms in 212 residues -29: [ OK ] InsertMoleculesTest.InsertsMoleculesWithReplacement (13 ms) +29: [ OK ] InsertMoleculesTest.InsertsMoleculesWithReplacement (14 ms) 29: [ RUN ] InsertMoleculesTest.InsertsMoleculesIntoFixedPositions 29: Initialising inter-atomic distances... 29: @@ -10559,7 +10579,7 @@ 29: 29: Output configuration contains 6 atoms in 3 residues 29: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoFixedPositions (3 ms) -29: [----------] 5 tests from InsertMoleculesTest (28 ms total) +29: [----------] 5 tests from InsertMoleculesTest (27 ms total) 29: 29: [----------] 12 tests from GetIrTest 29: [ RUN ] GetIrTest.HandlesDifferentKindsOfMdpLines @@ -10572,7 +10592,7 @@ 29: 29: Ignoring obsolete mdp entry 'title' 29: Replacing old mdp entry 'xtc_grps' by 'compressed-x-grps' -29: [ OK ] GetIrTest.HandlesDifferentKindsOfMdpLines (4 ms) +29: [ OK ] GetIrTest.HandlesDifferentKindsOfMdpLines (5 ms) 29: [ RUN ] GetIrTest.HandlesOnlyCutoffScheme 29: [ OK ] GetIrTest.HandlesOnlyCutoffScheme (4 ms) 29: [ RUN ] GetIrTest.UserErrorsSilentlyTolerated @@ -10583,7 +10603,7 @@ 29: scheme was introduced, but the group scheme was still the default. The 29: default is now the Verlet scheme, so you will observe different behaviour. 29: -29: [ OK ] GetIrTest.UserErrorsSilentlyTolerated (3 ms) +29: [ OK ] GetIrTest.UserErrorsSilentlyTolerated (5 ms) 29: [ RUN ] GetIrTest.DefineHandlesAssignmentOnRhs 29: 29: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_DefineHandlesAssignmentOnRhs_input.mdp, line 2]: @@ -10610,7 +10630,7 @@ 29: scheme was introduced, but the group scheme was still the default. The 29: default is now the Verlet scheme, so you will observe different behaviour. 29: -29: [ OK ] GetIrTest.ProducesOutputFromElectricField (3 ms) +29: [ OK ] GetIrTest.ProducesOutputFromElectricField (5 ms) 29: [ RUN ] GetIrTest.ProducesOutputFromElectricFieldPulsed 29: 29: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricFieldPulsed_input.mdp, line 2]: @@ -10630,7 +10650,7 @@ 29: 29: [ OK ] GetIrTest.ProducesOutputFromElectricFieldOscillating (4 ms) 29: [ RUN ] GetIrTest.TerminatesOnDuplicateOldAndNewKeys -29: [ OK ] GetIrTest.TerminatesOnDuplicateOldAndNewKeys (7 ms) +29: [ OK ] GetIrTest.TerminatesOnDuplicateOldAndNewKeys (3 ms) 29: [ RUN ] GetIrTest.ImplicitSolventNoWorks 29: 29: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ImplicitSolventNoWorks_input.mdp, line 2]: @@ -10641,7 +10661,7 @@ 29: 29: [ OK ] GetIrTest.ImplicitSolventNoWorks (4 ms) 29: [ RUN ] GetIrTest.ImplicitSolventYesWorks -29: [ OK ] GetIrTest.ImplicitSolventYesWorks (7 ms) +29: [ OK ] GetIrTest.ImplicitSolventYesWorks (6 ms) 29: [ RUN ] GetIrTest.HandlesMimic 29: 29: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_HandlesMimic_input.mdp, line 3]: @@ -10651,7 +10671,7 @@ 29: default is now the Verlet scheme, so you will observe different behaviour. 29: 29: [ OK ] GetIrTest.HandlesMimic (4 ms) -29: [----------] 12 tests from GetIrTest (52 ms total) +29: [----------] 12 tests from GetIrTest (53 ms total) 29: 29: [----------] 5 tests from SolvateTest 29: [ RUN ] SolvateTest.cs_box_Works @@ -10731,7 +10751,7 @@ 29: Density : 974.777 (g/l) 29: Number of solvent molecules: 886 29: -29: [ OK ] SolvateTest.cs_cp_Works (61 ms) +29: [ OK ] SolvateTest.cs_cp_Works (59 ms) 29: [ RUN ] SolvateTest.cs_cp_p_Works 29: Reading solute configuration 29: Reading solvent configuration @@ -10814,7 +10834,7 @@ 29: Density : 279.3 (g/l) 29: Number of solvent molecules: 252 29: -29: [ OK ] SolvateTest.shell_Works (32 ms) +29: [ OK ] SolvateTest.shell_Works (34 ms) 29: [ RUN ] SolvateTest.update_Topology_Works 29: Reading solute configuration 29: Reading solvent configuration @@ -10858,13 +10878,13 @@ 29: Processing topology 29: Adding line for 1876 solvent molecules with resname (HOH) to topology file (/build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_update_Topology_Works_simple.top) 29: Adding line for 2169 solvent molecules with resname (SOL) to topology file (/build/gromacs-2019.1/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_update_Topology_Works_simple.top) -29: [ OK ] SolvateTest.update_Topology_Works (228 ms) -29: [----------] 5 tests from SolvateTest (396 ms total) +29: [ OK ] SolvateTest.update_Topology_Works (235 ms) +29: [----------] 5 tests from SolvateTest (401 ms total) 29: 29: [----------] Global test environment tear-down -29: [==========] 26 tests from 4 test cases ran. (481 ms total) +29: [==========] 26 tests from 4 test cases ran. (486 ms total) 29: [ PASSED ] 26 tests. -29/40 Test #29: GmxPreprocessTests ............... Passed 0.50 sec +29/40 Test #29: GmxPreprocessTests ............... Passed 0.51 sec test 30 Start 30: Pdb2gmxTest @@ -10934,7 +10954,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Oplsaa force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/0 (493 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/0 (523 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/1 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -10997,7 +11017,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Oplsaa force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/1 (536 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/1 (585 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/2 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -11058,7 +11078,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Oplsaa force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/2 (495 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/2 (536 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/3 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -11119,7 +11139,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Oplsaa force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/3 (445 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/3 (492 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/4 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -11184,7 +11204,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Oplsaa force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/4 (528 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/4 (579 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/5 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -11250,7 +11270,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Oplsaa force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/5 (585 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/5 (620 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/6 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -11314,7 +11334,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Oplsaa force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/6 (562 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/6 (600 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/7 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -11378,7 +11398,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Oplsaa force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/7 (500 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/7 (548 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/8 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -11440,7 +11460,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Oplsaa force field and the tip4p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/8 (497 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/8 (517 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/9 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -11503,7 +11523,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Oplsaa force field and the tip4p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/9 (553 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/9 (575 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/10 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -11564,7 +11584,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Oplsaa force field and the tip4p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/10 (485 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/10 (532 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/11 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -11625,7 +11645,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Oplsaa force field and the tip4p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/11 (441 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/11 (475 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/12 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -11690,7 +11710,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Oplsaa force field and the tip4p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/12 (516 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/12 (559 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/13 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -11756,7 +11776,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Oplsaa force field and the tip4p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/13 (582 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/13 (614 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/14 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -11820,7 +11840,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Oplsaa force field and the tip4p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/14 (534 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/14 (568 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/15 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -11884,7 +11904,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Oplsaa force field and the tip4p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/15 (479 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/15 (507 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/16 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -11946,7 +11966,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Oplsaa force field and the tip5p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/16 (477 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/16 (508 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/17 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -12009,7 +12029,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Oplsaa force field and the tip5p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/17 (542 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/17 (575 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/18 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -12070,7 +12090,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Oplsaa force field and the tip5p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/18 (514 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/18 (512 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/19 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -12131,7 +12151,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Oplsaa force field and the tip5p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/19 (479 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/19 (444 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/20 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -12262,7 +12282,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Oplsaa force field and the tip5p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/21 (618 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/21 (609 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/22 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -12326,7 +12346,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Oplsaa force field and the tip5p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/22 (561 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/22 (576 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/23 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -12390,8 +12410,8 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Oplsaa force field and the tip5p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/23 (502 ms) -30: [----------] 24 tests from ForOplsaa/Pdb2gmxTest (12473 ms total) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/23 (528 ms) +30: [----------] 24 tests from ForOplsaa/Pdb2gmxTest (13133 ms total) 30: 30: [----------] 16 tests from ForGromos43a1/Pdb2gmxTest 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -12470,7 +12490,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Gromos43a1 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/0 (257 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/0 (263 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/1 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -12548,7 +12568,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Gromos43a1 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/1 (304 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/1 (298 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/2 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -12624,7 +12644,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Gromos43a1 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/2 (260 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/2 (243 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/3 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -12700,7 +12720,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Gromos43a1 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/3 (242 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/3 (237 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/4 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -12780,7 +12800,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Gromos43a1 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/4 (273 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/4 (276 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/5 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -12861,7 +12881,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Gromos43a1 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/5 (324 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/5 (325 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/6 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -13019,7 +13039,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Gromos43a1 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/7 (249 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/7 (256 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/8 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -13096,7 +13116,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Gromos43a1 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/8 (257 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/8 (259 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/9 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -13174,7 +13194,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Gromos43a1 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/9 (301 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/9 (309 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/10 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -13250,7 +13270,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Gromos43a1 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/10 (259 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/10 (279 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/11 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -13326,7 +13346,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Gromos43a1 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/11 (234 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/11 (255 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/12 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -13406,7 +13426,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Gromos43a1 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/12 (267 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/12 (278 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/13 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -13487,7 +13507,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Gromos43a1 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/13 (303 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/13 (318 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/14 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -13566,7 +13586,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Gromos43a1 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/14 (265 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/14 (275 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/15 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -13645,8 +13665,8 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Gromos43a1 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/15 (241 ms) -30: [----------] 16 tests from ForGromos43a1/Pdb2gmxTest (4310 ms total) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/15 (254 ms) +30: [----------] 16 tests from ForGromos43a1/Pdb2gmxTest (4402 ms total) 30: 30: [----------] 16 tests from ForGromos53a6/Pdb2gmxTest 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -13729,7 +13749,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Gromos53a6 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/0 (255 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/0 (257 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/1 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -13811,7 +13831,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Gromos53a6 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/1 (296 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/1 (311 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/2 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -13891,7 +13911,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Gromos53a6 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/2 (251 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/2 (271 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/3 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -13971,7 +13991,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Gromos53a6 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/3 (235 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/3 (245 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/4 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -14055,7 +14075,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Gromos53a6 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/4 (267 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/4 (269 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/5 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -14140,7 +14160,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Gromos53a6 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/5 (305 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/5 (334 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/6 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -14223,7 +14243,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Gromos53a6 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/6 (265 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/6 (287 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/7 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -14306,7 +14326,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Gromos53a6 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/7 (240 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/7 (264 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/8 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -14387,7 +14407,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Gromos53a6 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/8 (246 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/8 (261 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/9 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -14469,7 +14489,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Gromos53a6 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/9 (299 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/9 (301 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/10 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -14549,7 +14569,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Gromos53a6 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/10 (258 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/10 (255 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/11 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -14629,7 +14649,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Gromos53a6 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/11 (236 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/11 (237 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/12 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -14713,7 +14733,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Gromos53a6 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/12 (263 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/12 (271 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/13 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -14881,7 +14901,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Gromos53a6 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/14 (272 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/14 (288 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/15 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -14964,8 +14984,8 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Gromos53a6 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/15 (254 ms) -30: [----------] 16 tests from ForGromos53a6/Pdb2gmxTest (4257 ms total) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/15 (264 ms) +30: [----------] 16 tests from ForGromos53a6/Pdb2gmxTest (4432 ms total) 30: 30: [----------] 8 tests from ForAmber99sb_ildn/Pdb2gmxTest 30: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -15042,7 +15062,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Amber99sb-ildn force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/0 (476 ms) +30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/0 (484 ms) 30: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/1 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/dna.r2b @@ -15118,7 +15138,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Amber99sb-ildn force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/1 (535 ms) +30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/1 (529 ms) 30: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/2 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/dna.r2b @@ -15192,7 +15212,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Amber99sb-ildn force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/2 (484 ms) +30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/2 (542 ms) 30: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/3 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/dna.r2b @@ -15266,7 +15286,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Amber99sb-ildn force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/3 (425 ms) +30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/3 (483 ms) 30: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/4 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/dna.r2b @@ -15344,7 +15364,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Amber99sb-ildn force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/4 (528 ms) +30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/4 (567 ms) 30: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/5 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/dna.r2b @@ -15423,7 +15443,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Amber99sb-ildn force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/5 (583 ms) +30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/5 (632 ms) 30: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/6 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/dna.r2b @@ -15500,7 +15520,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Amber99sb-ildn force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/6 (522 ms) +30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/6 (567 ms) 30: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/7 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/dna.r2b @@ -15577,8 +15597,8 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Amber99sb-ildn force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/7 (466 ms) -30: [----------] 8 tests from ForAmber99sb_ildn/Pdb2gmxTest (4020 ms total) +30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/7 (517 ms) +30: [----------] 8 tests from ForAmber99sb_ildn/Pdb2gmxTest (4322 ms total) 30: 30: [----------] 8 tests from ForCharmm27/Pdb2gmxTest 30: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -15664,7 +15684,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/0 (471 ms) +30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/0 (496 ms) 30: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/1 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -15749,7 +15769,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/1 (532 ms) +30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/1 (555 ms) 30: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/2 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -15832,7 +15852,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/2 (475 ms) +30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/2 (510 ms) 30: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/3 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -15915,7 +15935,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/3 (435 ms) +30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/3 (456 ms) 30: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/4 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -16002,7 +16022,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/4 (512 ms) +30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/4 (536 ms) 30: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/5 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -16090,7 +16110,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/5 (559 ms) +30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/5 (594 ms) 30: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/6 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -16176,7 +16196,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/6 (507 ms) +30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/6 (552 ms) 30: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/7 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -16262,8 +16282,8 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/7 (460 ms) -30: [----------] 8 tests from ForCharmm27/Pdb2gmxTest (3952 ms total) +30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/7 (501 ms) +30: [----------] 8 tests from ForCharmm27/Pdb2gmxTest (4201 ms total) 30: 30: [----------] 8 tests from ChainSep/Pdb2gmxTest 30: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -16360,7 +16380,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/0 (478 ms) +30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/0 (511 ms) 30: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/1 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -16504,7 +16524,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/1 (81 ms) +30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/1 (85 ms) 30: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/2 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -16599,7 +16619,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/2 (471 ms) +30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/2 (519 ms) 30: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/3 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -16743,7 +16763,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/3 (78 ms) +30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/3 (86 ms) 30: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/4 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -16842,7 +16862,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/4 (472 ms) +30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/4 (531 ms) 30: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/5 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -17012,7 +17032,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/5 (81 ms) +30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/5 (90 ms) 30: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/6 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -17103,7 +17123,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/6 (457 ms) +30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/6 (524 ms) 30: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/7 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -17220,13 +17240,13 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/7 (78 ms) -30: [----------] 8 tests from ChainSep/Pdb2gmxTest (2196 ms total) +30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/7 (85 ms) +30: [----------] 8 tests from ChainSep/Pdb2gmxTest (2434 ms total) 30: 30: [----------] Global test environment tear-down -30: [==========] 80 tests from 6 test cases ran. (31208 ms total) +30: [==========] 80 tests from 6 test cases ran. (32924 ms total) 30: [ PASSED ] 80 tests. -30/40 Test #30: Pdb2gmxTest ...................... Passed 31.25 sec +30/40 Test #30: Pdb2gmxTest ...................... Passed 32.97 sec test 31 Start 31: CorrelationsTest @@ -17236,26 +17256,26 @@ 31: [----------] Global test environment set-up. 31: [----------] 10 tests from AutocorrTest 31: [ RUN ] AutocorrTest.EacNormal -31: [ OK ] AutocorrTest.EacNormal (32 ms) +31: [ OK ] AutocorrTest.EacNormal (37 ms) 31: [ RUN ] AutocorrTest.EacNoNormalize -31: [ OK ] AutocorrTest.EacNoNormalize (16 ms) +31: [ OK ] AutocorrTest.EacNoNormalize (31 ms) 31: [ RUN ] AutocorrTest.EacCos -31: [ OK ] AutocorrTest.EacCos (40 ms) +31: [ OK ] AutocorrTest.EacCos (60 ms) 31: [ RUN ] AutocorrTest.EacVector -31: [ OK ] AutocorrTest.EacVector (60 ms) +31: [ OK ] AutocorrTest.EacVector (55 ms) 31: [ RUN ] AutocorrTest.EacRcross 31: [ OK ] AutocorrTest.EacRcross (2 ms) 31: [ RUN ] AutocorrTest.EacP0 -31: [ OK ] AutocorrTest.EacP0 (66 ms) +31: [ OK ] AutocorrTest.EacP0 (27 ms) 31: [ RUN ] AutocorrTest.EacP1 -31: [ OK ] AutocorrTest.EacP1 (55 ms) +31: [ OK ] AutocorrTest.EacP1 (22 ms) 31: [ RUN ] AutocorrTest.EacP2 -31: [ OK ] AutocorrTest.EacP2 (108 ms) +31: [ OK ] AutocorrTest.EacP2 (42 ms) 31: [ RUN ] AutocorrTest.EacP3 31: [ OK ] AutocorrTest.EacP3 (8 ms) 31: [ RUN ] AutocorrTest.EacP4 -31: [ OK ] AutocorrTest.EacP4 (35 ms) -31: [----------] 10 tests from AutocorrTest (424 ms total) +31: [ OK ] AutocorrTest.EacP4 (22 ms) +31: [----------] 10 tests from AutocorrTest (309 ms total) 31: 31: [----------] 1 test from ManyAutocorrelationTest 31: [ RUN ] ManyAutocorrelationTest.Empty @@ -17263,9 +17283,9 @@ 31: [----------] 1 test from ManyAutocorrelationTest (1 ms total) 31: 31: [----------] Global test environment tear-down -31: [==========] 11 tests from 2 test cases ran. (431 ms total) +31: [==========] 11 tests from 2 test cases ran. (313 ms total) 31: [ PASSED ] 11 tests. -31/40 Test #31: CorrelationsTest ................. Passed 0.45 sec +31/40 Test #31: CorrelationsTest ................. Passed 0.33 sec test 32 Start 32: AnalysisDataUnitTests @@ -17292,20 +17312,20 @@ 32: [ RUN ] AnalysisDataCommonTest/0.CallsColumnModuleCorrectly 32: [ OK ] AnalysisDataCommonTest/0.CallsColumnModuleCorrectly (1 ms) 32: [ RUN ] AnalysisDataCommonTest/0.CallsModuleCorrectlyWithOutOfOrderFrames -32: [ OK ] AnalysisDataCommonTest/0.CallsModuleCorrectlyWithOutOfOrderFrames (1 ms) +32: [ OK ] AnalysisDataCommonTest/0.CallsModuleCorrectlyWithOutOfOrderFrames (6 ms) 32: [ RUN ] AnalysisDataCommonTest/0.FullStorageWorks -32: [ OK ] AnalysisDataCommonTest/0.FullStorageWorks (1 ms) +32: [ OK ] AnalysisDataCommonTest/0.FullStorageWorks (0 ms) 32: [ RUN ] AnalysisDataCommonTest/0.CanAddModuleAfterStoredData -32: [ OK ] AnalysisDataCommonTest/0.CanAddModuleAfterStoredData (0 ms) +32: [ OK ] AnalysisDataCommonTest/0.CanAddModuleAfterStoredData (1 ms) 32: [ RUN ] AnalysisDataCommonTest/0.LimitedStorageWorks -32: [ OK ] AnalysisDataCommonTest/0.LimitedStorageWorks (1 ms) -32: [----------] 8 tests from AnalysisDataCommonTest/0 (7 ms total) +32: [ OK ] AnalysisDataCommonTest/0.LimitedStorageWorks (0 ms) +32: [----------] 8 tests from AnalysisDataCommonTest/0 (11 ms total) 32: 32: [----------] 8 tests from AnalysisDataCommonTest/1, where TypeParam = (anonymous namespace)::DataSetsInputData 32: [ RUN ] AnalysisDataCommonTest/1.CallsModuleCorrectly 32: [ OK ] AnalysisDataCommonTest/1.CallsModuleCorrectly (1 ms) 32: [ RUN ] AnalysisDataCommonTest/1.CallsParallelModuleCorrectly -32: [ OK ] AnalysisDataCommonTest/1.CallsParallelModuleCorrectly (1 ms) +32: [ OK ] AnalysisDataCommonTest/1.CallsParallelModuleCorrectly (2 ms) 32: [ RUN ] AnalysisDataCommonTest/1.CallsMixedModulesCorrectly 32: [ OK ] AnalysisDataCommonTest/1.CallsMixedModulesCorrectly (1 ms) 32: [ RUN ] AnalysisDataCommonTest/1.CallsColumnModuleCorrectly @@ -17313,41 +17333,41 @@ 32: [ RUN ] AnalysisDataCommonTest/1.CallsModuleCorrectlyWithOutOfOrderFrames 32: [ OK ] AnalysisDataCommonTest/1.CallsModuleCorrectlyWithOutOfOrderFrames (1 ms) 32: [ RUN ] AnalysisDataCommonTest/1.FullStorageWorks -32: [ OK ] AnalysisDataCommonTest/1.FullStorageWorks (1 ms) +32: [ OK ] AnalysisDataCommonTest/1.FullStorageWorks (0 ms) 32: [ RUN ] AnalysisDataCommonTest/1.CanAddModuleAfterStoredData -32: [ OK ] AnalysisDataCommonTest/1.CanAddModuleAfterStoredData (0 ms) +32: [ OK ] AnalysisDataCommonTest/1.CanAddModuleAfterStoredData (1 ms) 32: [ RUN ] AnalysisDataCommonTest/1.LimitedStorageWorks -32: [ OK ] AnalysisDataCommonTest/1.LimitedStorageWorks (1 ms) -32: [----------] 8 tests from AnalysisDataCommonTest/1 (7 ms total) +32: [ OK ] AnalysisDataCommonTest/1.LimitedStorageWorks (0 ms) +32: [----------] 8 tests from AnalysisDataCommonTest/1 (8 ms total) 32: 32: [----------] 8 tests from AnalysisDataCommonTest/2, where TypeParam = (anonymous namespace)::MultipointInputData 32: [ RUN ] AnalysisDataCommonTest/2.CallsModuleCorrectly -32: [ OK ] AnalysisDataCommonTest/2.CallsModuleCorrectly (1 ms) +32: [ OK ] AnalysisDataCommonTest/2.CallsModuleCorrectly (2 ms) 32: [ RUN ] AnalysisDataCommonTest/2.CallsParallelModuleCorrectly 32: [ OK ] AnalysisDataCommonTest/2.CallsParallelModuleCorrectly (1 ms) 32: [ RUN ] AnalysisDataCommonTest/2.CallsMixedModulesCorrectly -32: [ OK ] AnalysisDataCommonTest/2.CallsMixedModulesCorrectly (1 ms) +32: [ OK ] AnalysisDataCommonTest/2.CallsMixedModulesCorrectly (2 ms) 32: [ RUN ] AnalysisDataCommonTest/2.CallsColumnModuleCorrectly -32: [ OK ] AnalysisDataCommonTest/2.CallsColumnModuleCorrectly (2 ms) +32: [ OK ] AnalysisDataCommonTest/2.CallsColumnModuleCorrectly (1 ms) 32: [ RUN ] AnalysisDataCommonTest/2.CallsModuleCorrectlyWithOutOfOrderFrames -32: [ OK ] AnalysisDataCommonTest/2.CallsModuleCorrectlyWithOutOfOrderFrames (1 ms) +32: [ OK ] AnalysisDataCommonTest/2.CallsModuleCorrectlyWithOutOfOrderFrames (2 ms) 32: [ RUN ] AnalysisDataCommonTest/2.FullStorageWorks -32: [ OK ] AnalysisDataCommonTest/2.FullStorageWorks (1 ms) +32: [ OK ] AnalysisDataCommonTest/2.FullStorageWorks (7 ms) 32: [ RUN ] AnalysisDataCommonTest/2.CanAddModuleAfterStoredData -32: [ OK ] AnalysisDataCommonTest/2.CanAddModuleAfterStoredData (1 ms) +32: [ OK ] AnalysisDataCommonTest/2.CanAddModuleAfterStoredData (0 ms) 32: [ RUN ] AnalysisDataCommonTest/2.LimitedStorageWorks -32: [ OK ] AnalysisDataCommonTest/2.LimitedStorageWorks (0 ms) -32: [----------] 8 tests from AnalysisDataCommonTest/2 (8 ms total) +32: [ OK ] AnalysisDataCommonTest/2.LimitedStorageWorks (1 ms) +32: [----------] 8 tests from AnalysisDataCommonTest/2 (16 ms total) 32: 32: [----------] 8 tests from AnalysisDataCommonTest/3, where TypeParam = (anonymous namespace)::MultipointDataSetsInputData 32: [ RUN ] AnalysisDataCommonTest/3.CallsModuleCorrectly -32: [ OK ] AnalysisDataCommonTest/3.CallsModuleCorrectly (1 ms) +32: [ OK ] AnalysisDataCommonTest/3.CallsModuleCorrectly (2 ms) 32: [ RUN ] AnalysisDataCommonTest/3.CallsParallelModuleCorrectly -32: [ OK ] AnalysisDataCommonTest/3.CallsParallelModuleCorrectly (2 ms) +32: [ OK ] AnalysisDataCommonTest/3.CallsParallelModuleCorrectly (1 ms) 32: [ RUN ] AnalysisDataCommonTest/3.CallsMixedModulesCorrectly 32: [ OK ] AnalysisDataCommonTest/3.CallsMixedModulesCorrectly (1 ms) 32: [ RUN ] AnalysisDataCommonTest/3.CallsColumnModuleCorrectly -32: [ OK ] AnalysisDataCommonTest/3.CallsColumnModuleCorrectly (1 ms) +32: [ OK ] AnalysisDataCommonTest/3.CallsColumnModuleCorrectly (2 ms) 32: [ RUN ] AnalysisDataCommonTest/3.CallsModuleCorrectlyWithOutOfOrderFrames 32: [ OK ] AnalysisDataCommonTest/3.CallsModuleCorrectlyWithOutOfOrderFrames (2 ms) 32: [ RUN ] AnalysisDataCommonTest/3.FullStorageWorks @@ -17356,24 +17376,24 @@ 32: [ OK ] AnalysisDataCommonTest/3.CanAddModuleAfterStoredData (1 ms) 32: [ RUN ] AnalysisDataCommonTest/3.LimitedStorageWorks 32: [ OK ] AnalysisDataCommonTest/3.LimitedStorageWorks (1 ms) -32: [----------] 8 tests from AnalysisDataCommonTest/3 (9 ms total) +32: [----------] 8 tests from AnalysisDataCommonTest/3 (10 ms total) 32: 32: [----------] 4 tests from AnalysisArrayDataTest 32: [ RUN ] AnalysisArrayDataTest.CallsModuleCorrectly 32: [ OK ] AnalysisArrayDataTest.CallsModuleCorrectly (1 ms) 32: [ RUN ] AnalysisArrayDataTest.StorageWorks -32: [ OK ] AnalysisArrayDataTest.StorageWorks (0 ms) +32: [ OK ] AnalysisArrayDataTest.StorageWorks (1 ms) 32: [ RUN ] AnalysisArrayDataTest.CanSetXAxis 32: [ OK ] AnalysisArrayDataTest.CanSetXAxis (0 ms) 32: [ RUN ] AnalysisArrayDataTest.CanSetXAxisBeforeRowCount -32: [ OK ] AnalysisArrayDataTest.CanSetXAxisBeforeRowCount (1 ms) +32: [ OK ] AnalysisArrayDataTest.CanSetXAxisBeforeRowCount (0 ms) 32: [----------] 4 tests from AnalysisArrayDataTest (2 ms total) 32: 32: [----------] 6 tests from AverageModuleTest 32: [ RUN ] AverageModuleTest.BasicTest 32: [ OK ] AverageModuleTest.BasicTest (1 ms) 32: [ RUN ] AverageModuleTest.HandlesMultipointData -32: [ OK ] AverageModuleTest.HandlesMultipointData (1 ms) +32: [ OK ] AverageModuleTest.HandlesMultipointData (2 ms) 32: [ RUN ] AverageModuleTest.HandlesMultipleDataSets 32: [ OK ] AverageModuleTest.HandlesMultipleDataSets (2 ms) 32: [ RUN ] AverageModuleTest.HandlesDataSetAveraging @@ -17382,13 +17402,13 @@ 32: [ OK ] AverageModuleTest.CanCustomizeXAxis (1 ms) 32: [ RUN ] AverageModuleTest.CanCustomizeNonUniformXAxis 32: [ OK ] AverageModuleTest.CanCustomizeNonUniformXAxis (1 ms) -32: [----------] 6 tests from AverageModuleTest (8 ms total) +32: [----------] 6 tests from AverageModuleTest (10 ms total) 32: 32: [----------] 2 tests from FrameAverageModuleTest 32: [ RUN ] FrameAverageModuleTest.BasicTest 32: [ OK ] FrameAverageModuleTest.BasicTest (1 ms) 32: [ RUN ] FrameAverageModuleTest.HandlesMultipleDataSets -32: [ OK ] FrameAverageModuleTest.HandlesMultipleDataSets (1 ms) +32: [ OK ] FrameAverageModuleTest.HandlesMultipleDataSets (2 ms) 32: [----------] 2 tests from FrameAverageModuleTest (3 ms total) 32: 32: [----------] 7 tests from AnalysisHistogramSettingsTest @@ -17412,37 +17432,37 @@ 32: [ RUN ] SimpleHistogramModuleTest.ComputesCorrectly 32: [ OK ] SimpleHistogramModuleTest.ComputesCorrectly (2 ms) 32: [ RUN ] SimpleHistogramModuleTest.ComputesCorrectlyWithAll -32: [ OK ] SimpleHistogramModuleTest.ComputesCorrectlyWithAll (2 ms) -32: [----------] 2 tests from SimpleHistogramModuleTest (4 ms total) +32: [ OK ] SimpleHistogramModuleTest.ComputesCorrectlyWithAll (3 ms) +32: [----------] 2 tests from SimpleHistogramModuleTest (5 ms total) 32: 32: [----------] 3 tests from WeightedHistogramModuleTest 32: [ RUN ] WeightedHistogramModuleTest.ComputesCorrectly 32: [ OK ] WeightedHistogramModuleTest.ComputesCorrectly (2 ms) 32: [ RUN ] WeightedHistogramModuleTest.ComputesCorrectlyWithAll -32: [ OK ] WeightedHistogramModuleTest.ComputesCorrectlyWithAll (2 ms) +32: [ OK ] WeightedHistogramModuleTest.ComputesCorrectlyWithAll (3 ms) 32: [ RUN ] WeightedHistogramModuleTest.HandlesMultipleDataSets -32: [ OK ] WeightedHistogramModuleTest.HandlesMultipleDataSets (3 ms) -32: [----------] 3 tests from WeightedHistogramModuleTest (7 ms total) +32: [ OK ] WeightedHistogramModuleTest.HandlesMultipleDataSets (2 ms) +32: [----------] 3 tests from WeightedHistogramModuleTest (8 ms total) 32: 32: [----------] 3 tests from BinAverageModuleTest 32: [ RUN ] BinAverageModuleTest.ComputesCorrectly -32: [ OK ] BinAverageModuleTest.ComputesCorrectly (1 ms) +32: [ OK ] BinAverageModuleTest.ComputesCorrectly (6 ms) 32: [ RUN ] BinAverageModuleTest.ComputesCorrectlyWithAll 32: [ OK ] BinAverageModuleTest.ComputesCorrectlyWithAll (2 ms) 32: [ RUN ] BinAverageModuleTest.HandlesMultipleDataSets 32: [ OK ] BinAverageModuleTest.HandlesMultipleDataSets (2 ms) -32: [----------] 3 tests from BinAverageModuleTest (5 ms total) +32: [----------] 3 tests from BinAverageModuleTest (10 ms total) 32: 32: [----------] 4 tests from AbstractAverageHistogramTest 32: [ RUN ] AbstractAverageHistogramTest.ClonesCorrectly -32: [ OK ] AbstractAverageHistogramTest.ClonesCorrectly (2 ms) +32: [ OK ] AbstractAverageHistogramTest.ClonesCorrectly (3 ms) 32: [ RUN ] AbstractAverageHistogramTest.ComputesCumulativeHistogram 32: [ OK ] AbstractAverageHistogramTest.ComputesCumulativeHistogram (2 ms) 32: [ RUN ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidth -32: [ OK ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidth (1 ms) +32: [ OK ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidth (2 ms) 32: [ RUN ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidthWithIntegerBins 32: [ OK ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidthWithIntegerBins (2 ms) -32: [----------] 4 tests from AbstractAverageHistogramTest (8 ms total) +32: [----------] 4 tests from AbstractAverageHistogramTest (10 ms total) 32: 32: [----------] 3 tests from LifetimeModuleTest 32: [ RUN ] LifetimeModuleTest.BasicTest @@ -17454,9 +17474,9 @@ 32: [----------] 3 tests from LifetimeModuleTest (4 ms total) 32: 32: [----------] Global test environment tear-down -32: [==========] 69 tests from 14 test cases ran. (72 ms total) +32: [==========] 69 tests from 14 test cases ran. (98 ms total) 32: [ PASSED ] 69 tests. -32/40 Test #32: AnalysisDataUnitTests ............ Passed 0.09 sec +32/40 Test #32: AnalysisDataUnitTests ............ Passed 0.12 sec test 33 Start 33: SelectionUnitTests @@ -17471,9 +17491,9 @@ 33: 33: [----------] 15 tests from IndexBlockTest 33: [ RUN ] IndexBlockTest.CreatesUnknownBlock -33: [ OK ] IndexBlockTest.CreatesUnknownBlock (0 ms) +33: [ OK ] IndexBlockTest.CreatesUnknownBlock (1 ms) 33: [ RUN ] IndexBlockTest.CreatesAtomBlock -33: [ OK ] IndexBlockTest.CreatesAtomBlock (1 ms) +33: [ OK ] IndexBlockTest.CreatesAtomBlock (0 ms) 33: [ RUN ] IndexBlockTest.CreatesResidueBlock 33: [ OK ] IndexBlockTest.CreatesResidueBlock (0 ms) 33: [ RUN ] IndexBlockTest.CreatesMoleculeBlock @@ -17481,7 +17501,7 @@ 33: [ RUN ] IndexBlockTest.CreatesResidueBlockWithCompletion 33: [ OK ] IndexBlockTest.CreatesResidueBlockWithCompletion (0 ms) 33: [ RUN ] IndexBlockTest.CreatesMoleculeBlockWithCompletion -33: [ OK ] IndexBlockTest.CreatesMoleculeBlockWithCompletion (0 ms) +33: [ OK ] IndexBlockTest.CreatesMoleculeBlockWithCompletion (1 ms) 33: [ RUN ] IndexBlockTest.CreatesSingleBlock 33: [ OK ] IndexBlockTest.CreatesSingleBlock (0 ms) 33: [ RUN ] IndexBlockTest.ChecksGroupForFullBlocksPositive @@ -17504,48 +17524,48 @@ 33: 33: [----------] 11 tests from IndexMapTest 33: [ RUN ] IndexMapTest.InitializesAtomBlock -33: [ OK ] IndexMapTest.InitializesAtomBlock (0 ms) +33: [ OK ] IndexMapTest.InitializesAtomBlock (1 ms) 33: [ RUN ] IndexMapTest.InitializesOrgIdGroupAtom -33: [ OK ] IndexMapTest.InitializesOrgIdGroupAtom (1 ms) +33: [ OK ] IndexMapTest.InitializesOrgIdGroupAtom (0 ms) 33: [ RUN ] IndexMapTest.InitializesOrgIdGroupSingle 33: [ OK ] IndexMapTest.InitializesOrgIdGroupSingle (0 ms) 33: [ RUN ] IndexMapTest.InitializesOrgIdGroupResidue 33: [ OK ] IndexMapTest.InitializesOrgIdGroupResidue (0 ms) 33: [ RUN ] IndexMapTest.InitializesOrgIdGroupMolecule -33: [ OK ] IndexMapTest.InitializesOrgIdGroupMolecule (0 ms) +33: [ OK ] IndexMapTest.InitializesOrgIdGroupMolecule (1 ms) 33: [ RUN ] IndexMapTest.InitializesOrgIdGroupAll -33: [ OK ] IndexMapTest.InitializesOrgIdGroupAll (1 ms) +33: [ OK ] IndexMapTest.InitializesOrgIdGroupAll (0 ms) 33: [ RUN ] IndexMapTest.InitializesMoleculeBlock 33: [ OK ] IndexMapTest.InitializesMoleculeBlock (0 ms) 33: [ RUN ] IndexMapTest.MapsSingleBlock 33: [ OK ] IndexMapTest.MapsSingleBlock (0 ms) 33: [ RUN ] IndexMapTest.MapsResidueBlocks -33: [ OK ] IndexMapTest.MapsResidueBlocks (4 ms) +33: [ OK ] IndexMapTest.MapsResidueBlocks (1 ms) 33: [ RUN ] IndexMapTest.MapsResidueBlocksWithMask 33: [ OK ] IndexMapTest.MapsResidueBlocksWithMask (0 ms) 33: [ RUN ] IndexMapTest.HandlesMultipleRequests -33: [ OK ] IndexMapTest.HandlesMultipleRequests (1 ms) -33: [----------] 11 tests from IndexMapTest (8 ms total) +33: [ OK ] IndexMapTest.HandlesMultipleRequests (0 ms) +33: [----------] 11 tests from IndexMapTest (4 ms total) 33: 33: [----------] 15 tests from NeighborhoodSearchTest 33: [ RUN ] NeighborhoodSearchTest.SimpleSearch -33: [ OK ] NeighborhoodSearchTest.SimpleSearch (26 ms) +33: [ OK ] NeighborhoodSearchTest.SimpleSearch (23 ms) 33: [ RUN ] NeighborhoodSearchTest.SimpleSearchXY -33: [ OK ] NeighborhoodSearchTest.SimpleSearchXY (28 ms) +33: [ OK ] NeighborhoodSearchTest.SimpleSearchXY (23 ms) 33: [ RUN ] NeighborhoodSearchTest.GridSearchBox -33: [ OK ] NeighborhoodSearchTest.GridSearchBox (3 ms) +33: [ OK ] NeighborhoodSearchTest.GridSearchBox (4 ms) 33: [ RUN ] NeighborhoodSearchTest.GridSearchTriclinic -33: [ OK ] NeighborhoodSearchTest.GridSearchTriclinic (16 ms) +33: [ OK ] NeighborhoodSearchTest.GridSearchTriclinic (13 ms) 33: [ RUN ] NeighborhoodSearchTest.GridSearch2DPBC 33: [ OK ] NeighborhoodSearchTest.GridSearch2DPBC (7 ms) 33: [ RUN ] NeighborhoodSearchTest.GridSearchNoPBC -33: [ OK ] NeighborhoodSearchTest.GridSearchNoPBC (4 ms) +33: [ OK ] NeighborhoodSearchTest.GridSearchNoPBC (3 ms) 33: [ RUN ] NeighborhoodSearchTest.GridSearchXYBox -33: [ OK ] NeighborhoodSearchTest.GridSearchXYBox (3 ms) +33: [ OK ] NeighborhoodSearchTest.GridSearchXYBox (4 ms) 33: [ RUN ] NeighborhoodSearchTest.SimpleSelfPairsSearch 33: [ OK ] NeighborhoodSearchTest.SimpleSelfPairsSearch (0 ms) 33: [ RUN ] NeighborhoodSearchTest.GridSelfPairsSearch -33: [ OK ] NeighborhoodSearchTest.GridSelfPairsSearch (73 ms) +33: [ OK ] NeighborhoodSearchTest.GridSelfPairsSearch (66 ms) 33: [ RUN ] NeighborhoodSearchTest.HandlesConcurrentSearches 33: [ OK ] NeighborhoodSearchTest.HandlesConcurrentSearches (0 ms) 33: [ RUN ] NeighborhoodSearchTest.HandlesNoPBC @@ -17558,7 +17578,7 @@ 33: [ OK ] NeighborhoodSearchTest.SimpleSearchExclusions (6 ms) 33: [ RUN ] NeighborhoodSearchTest.GridSearchExclusions 33: [ OK ] NeighborhoodSearchTest.GridSearchExclusions (1 ms) -33: [----------] 15 tests from NeighborhoodSearchTest (168 ms total) +33: [----------] 15 tests from NeighborhoodSearchTest (152 ms total) 33: 33: [----------] 12 tests from PositionCalculationTest 33: [ RUN ] PositionCalculationTest.ComputesAtomPositions @@ -17576,32 +17596,32 @@ 33: [ RUN ] PositionCalculationTest.ComputesPositionsWithCompleteMax 33: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteMax (0 ms) 33: [ RUN ] PositionCalculationTest.ComputesPositionMask -33: [ OK ] PositionCalculationTest.ComputesPositionMask (0 ms) +33: [ OK ] PositionCalculationTest.ComputesPositionMask (1 ms) 33: [ RUN ] PositionCalculationTest.HandlesFramesWithLessAtoms -33: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms (1 ms) +33: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms (0 ms) 33: [ RUN ] PositionCalculationTest.HandlesFramesWithLessAtoms2 -33: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms2 (0 ms) +33: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms2 (1 ms) 33: [ RUN ] PositionCalculationTest.HandlesIdenticalStaticCalculations -33: [ OK ] PositionCalculationTest.HandlesIdenticalStaticCalculations (1 ms) +33: [ OK ] PositionCalculationTest.HandlesIdenticalStaticCalculations (0 ms) 33: [ RUN ] PositionCalculationTest.HandlesOverlappingStaticCalculations -33: [ OK ] PositionCalculationTest.HandlesOverlappingStaticCalculations (0 ms) -33: [----------] 12 tests from PositionCalculationTest (5 ms total) +33: [ OK ] PositionCalculationTest.HandlesOverlappingStaticCalculations (1 ms) +33: [----------] 12 tests from PositionCalculationTest (6 ms total) 33: 33: [----------] 30 tests from SelectionCollectionTest 33: [ RUN ] SelectionCollectionTest.HandlesNoSelections -33: [ OK ] SelectionCollectionTest.HandlesNoSelections (1 ms) +33: [ OK ] SelectionCollectionTest.HandlesNoSelections (0 ms) 33: [ RUN ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType 33: [ OK ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType (1 ms) 33: [ RUN ] SelectionCollectionTest.HandlesVelocityAndForceRequests -33: [ OK ] SelectionCollectionTest.HandlesVelocityAndForceRequests (0 ms) +33: [ OK ] SelectionCollectionTest.HandlesVelocityAndForceRequests (1 ms) 33: [ RUN ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry -33: [ OK ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry (1 ms) +33: [ OK ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry (0 ms) 33: [ RUN ] SelectionCollectionTest.ParsesSelectionsFromFile -33: [ OK ] SelectionCollectionTest.ParsesSelectionsFromFile (0 ms) +33: [ OK ] SelectionCollectionTest.ParsesSelectionsFromFile (1 ms) 33: [ RUN ] SelectionCollectionTest.HandlesAtypicalWhitespace -33: [ OK ] SelectionCollectionTest.HandlesAtypicalWhitespace (1 ms) +33: [ OK ] SelectionCollectionTest.HandlesAtypicalWhitespace (0 ms) 33: [ RUN ] SelectionCollectionTest.HandlesInvalidRegularExpressions -33: [ OK ] SelectionCollectionTest.HandlesInvalidRegularExpressions (0 ms) +33: [ OK ] SelectionCollectionTest.HandlesInvalidRegularExpressions (1 ms) 33: [ RUN ] SelectionCollectionTest.HandlesUnsupportedRegularExpressions 33: [ OK ] SelectionCollectionTest.HandlesUnsupportedRegularExpressions (1 ms) 33: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue @@ -17615,25 +17635,25 @@ 33: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 33: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 (1 ms) 33: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 -33: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 (0 ms) +33: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 (1 ms) 33: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 -33: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 (1 ms) +33: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 (0 ms) 33: [ RUN ] SelectionCollectionTest.HandlesUnsortedGroupReference 33: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReference (1 ms) 33: [ RUN ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed 33: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed (1 ms) 33: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup -33: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup (0 ms) +33: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup (1 ms) 33: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed -33: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed (1 ms) +33: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed (0 ms) 33: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 -33: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 (0 ms) +33: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 (1 ms) 33: [ RUN ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo 33: [ OK ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo (1 ms) 33: [ RUN ] SelectionCollectionTest.RecoversFromMissingAtomTypes -33: [ OK ] SelectionCollectionTest.RecoversFromMissingAtomTypes (1 ms) +33: [ OK ] SelectionCollectionTest.RecoversFromMissingAtomTypes (0 ms) 33: [ RUN ] SelectionCollectionTest.RecoversFromMissingPDBInfo -33: [ OK ] SelectionCollectionTest.RecoversFromMissingPDBInfo (0 ms) +33: [ OK ] SelectionCollectionTest.RecoversFromMissingPDBInfo (1 ms) 33: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation 33: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation (1 ms) 33: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation2 @@ -17648,13 +17668,13 @@ 33: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 (1 ms) 33: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 33: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 (1 ms) -33: [----------] 30 tests from SelectionCollectionTest (19 ms total) +33: [----------] 30 tests from SelectionCollectionTest (20 ms total) 33: 33: [----------] 14 tests from SelectionCollectionInteractiveTest 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesBasicInput 33: [ OK ] SelectionCollectionInteractiveTest.HandlesBasicInput (1 ms) 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesContinuation -33: [ OK ] SelectionCollectionInteractiveTest.HandlesContinuation (0 ms) +33: [ OK ] SelectionCollectionInteractiveTest.HandlesContinuation (1 ms) 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput 33: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput (1 ms) 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInput @@ -17666,7 +17686,7 @@ 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus 33: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus (1 ms) 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus -33: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus (1 ms) +33: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus (0 ms) 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus 33: [ OK ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus (0 ms) 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline @@ -17679,13 +17699,13 @@ 33: [ OK ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput (0 ms) 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively 33: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively (1 ms) -33: [----------] 14 tests from SelectionCollectionInteractiveTest (11 ms total) +33: [----------] 14 tests from SelectionCollectionInteractiveTest (12 ms total) 33: 33: [----------] 66 tests from SelectionCollectionDataTest 33: [ RUN ] SelectionCollectionDataTest.HandlesAllNone 33: [ OK ] SelectionCollectionDataTest.HandlesAllNone (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesAtomnr -33: [ OK ] SelectionCollectionDataTest.HandlesAtomnr (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesAtomnr (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesResnr 33: [ OK ] SelectionCollectionDataTest.HandlesResnr (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesResIndex @@ -17715,7 +17735,7 @@ 33: [ RUN ] SelectionCollectionDataTest.HandlesResname 33: [ OK ] SelectionCollectionDataTest.HandlesResname (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesCoordinateKeywords -33: [ OK ] SelectionCollectionDataTest.HandlesCoordinateKeywords (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesCoordinateKeywords (2 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesSameResidue 33: [ OK ] SelectionCollectionDataTest.HandlesSameResidue (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesSameResidueName @@ -17731,23 +17751,23 @@ 33: [ RUN ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword 33: [ OK ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword (6 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesPermuteModifier -33: [ OK ] SelectionCollectionDataTest.HandlesPermuteModifier (3 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesPermuteModifier (4 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesPlusModifier 33: [ OK ] SelectionCollectionDataTest.HandlesPlusModifier (3 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesMergeModifier 33: [ OK ] SelectionCollectionDataTest.HandlesMergeModifier (3 ms) 33: [ RUN ] SelectionCollectionDataTest.ComputesMassesAndCharges -33: [ OK ] SelectionCollectionDataTest.ComputesMassesAndCharges (2 ms) +33: [ OK ] SelectionCollectionDataTest.ComputesMassesAndCharges (3 ms) 33: [ RUN ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology -33: [ OK ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology (2 ms) +33: [ OK ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets -33: [ OK ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets (2 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesSelectionNames 33: [ OK ] SelectionCollectionDataTest.HandlesSelectionNames (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections -33: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections (2 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed -33: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed (2 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections 33: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections (2 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed @@ -17767,7 +17787,7 @@ 33: [ RUN ] SelectionCollectionDataTest.HandlesWildcardMatching 33: [ OK ] SelectionCollectionDataTest.HandlesWildcardMatching (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesRegexMatching -33: [ OK ] SelectionCollectionDataTest.HandlesRegexMatching (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesRegexMatching (2 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesBasicBoolean 33: [ OK ] SelectionCollectionDataTest.HandlesBasicBoolean (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters @@ -17785,7 +17805,7 @@ 33: [ RUN ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic 33: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesNumericComparisons -33: [ OK ] SelectionCollectionDataTest.HandlesNumericComparisons (2 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesNumericComparisons (3 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesArithmeticExpressions 33: [ OK ] SelectionCollectionDataTest.HandlesArithmeticExpressions (2 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesNumericVariables @@ -17795,9 +17815,9 @@ 33: [ RUN ] SelectionCollectionDataTest.HandlesPositionVariables 33: [ OK ] SelectionCollectionDataTest.HandlesPositionVariables (2 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesPositionVariableInModifier -33: [ OK ] SelectionCollectionDataTest.HandlesPositionVariableInModifier (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesPositionVariableInModifier (2 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositionInVariable -33: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionInVariable (2 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionInVariable (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables 33: [ OK ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis @@ -17807,24 +17827,24 @@ 33: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables 33: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables (2 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesUnusedVariables -33: [ OK ] SelectionCollectionDataTest.HandlesUnusedVariables (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesUnusedVariables (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups 33: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups 33: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 -33: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 (2 ms) -33: [----------] 66 tests from SelectionCollectionDataTest (94 ms total) +33: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 (1 ms) +33: [----------] 66 tests from SelectionCollectionDataTest (103 ms total) 33: 33: [----------] 17 tests from SelectionOptionTest 33: [ RUN ] SelectionOptionTest.ParsesSimpleSelection -33: [ OK ] SelectionOptionTest.ParsesSimpleSelection (0 ms) +33: [ OK ] SelectionOptionTest.ParsesSimpleSelection (1 ms) 33: [ RUN ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired -33: [ OK ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired (1 ms) +33: [ OK ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired (0 ms) 33: [ RUN ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired 33: [ OK ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired (1 ms) 33: [ RUN ] SelectionOptionTest.ChecksForSortedAtomsWhenRequired -33: [ OK ] SelectionOptionTest.ChecksForSortedAtomsWhenRequired (0 ms) +33: [ OK ] SelectionOptionTest.ChecksForSortedAtomsWhenRequired (1 ms) 33: [ RUN ] SelectionOptionTest.ChecksEmptySelections 33: [ OK ] SelectionOptionTest.ChecksEmptySelections (1 ms) 33: [ RUN ] SelectionOptionTest.ChecksEmptyDelayedSelections @@ -17834,9 +17854,9 @@ 33: [ RUN ] SelectionOptionTest.HandlesTooFewSelections 33: [ OK ] SelectionOptionTest.HandlesTooFewSelections (0 ms) 33: [ RUN ] SelectionOptionTest.HandlesDefaultSelectionText -33: [ OK ] SelectionOptionTest.HandlesDefaultSelectionText (0 ms) +33: [ OK ] SelectionOptionTest.HandlesDefaultSelectionText (1 ms) 33: [ RUN ] SelectionOptionTest.HandlesAdjuster -33: [ OK ] SelectionOptionTest.HandlesAdjuster (1 ms) +33: [ OK ] SelectionOptionTest.HandlesAdjuster (0 ms) 33: [ RUN ] SelectionOptionTest.HandlesDynamicWhenStaticRequiredWithAdjuster 33: [ OK ] SelectionOptionTest.HandlesDynamicWhenStaticRequiredWithAdjuster (0 ms) 33: [ RUN ] SelectionOptionTest.HandlesTooManySelectionsWithAdjuster @@ -17844,38 +17864,38 @@ 33: [ RUN ] SelectionOptionTest.HandlesTooFewSelectionsWithAdjuster 33: [ OK ] SelectionOptionTest.HandlesTooFewSelectionsWithAdjuster (0 ms) 33: [ RUN ] SelectionOptionTest.HandlesDelayedRequiredSelection -33: [ OK ] SelectionOptionTest.HandlesDelayedRequiredSelection (0 ms) +33: [ OK ] SelectionOptionTest.HandlesDelayedRequiredSelection (1 ms) 33: [ RUN ] SelectionOptionTest.HandlesTooFewDelayedRequiredSelections -33: [ OK ] SelectionOptionTest.HandlesTooFewDelayedRequiredSelections (1 ms) +33: [ OK ] SelectionOptionTest.HandlesTooFewDelayedRequiredSelections (0 ms) 33: [ RUN ] SelectionOptionTest.HandlesDelayedOptionalSelection -33: [ OK ] SelectionOptionTest.HandlesDelayedOptionalSelection (0 ms) +33: [ OK ] SelectionOptionTest.HandlesDelayedOptionalSelection (1 ms) 33: [ RUN ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster -33: [ OK ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster (1 ms) -33: [----------] 17 tests from SelectionOptionTest (8 ms total) +33: [ OK ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster (0 ms) +33: [----------] 17 tests from SelectionOptionTest (9 ms total) 33: 33: [----------] 9 tests from SelectionFileOptionTest 33: [ RUN ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile -33: [ OK ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile (0 ms) +33: [ OK ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile (1 ms) 33: [ RUN ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions -33: [ OK ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions (1 ms) +33: [ OK ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions (0 ms) 33: [ RUN ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile -33: [ OK ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile (0 ms) +33: [ OK ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile (1 ms) 33: [ RUN ] SelectionFileOptionTest.HandlesRequiredOptionFromFile -33: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFile (1 ms) +33: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFile (0 ms) 33: [ RUN ] SelectionFileOptionTest.HandlesRequiredOptionFromFileWithOtherOptionSet -33: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFileWithOtherOptionSet (0 ms) +33: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFileWithOtherOptionSet (1 ms) 33: [ RUN ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile -33: [ OK ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile (1 ms) +33: [ OK ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile (0 ms) 33: [ RUN ] SelectionFileOptionTest.GivesErrorWithNoFile 33: [ OK ] SelectionFileOptionTest.GivesErrorWithNoFile (0 ms) 33: [ RUN ] SelectionFileOptionTest.GivesErrorWithNonExistentFile -33: [ OK ] SelectionFileOptionTest.GivesErrorWithNonExistentFile (1 ms) +33: [ OK ] SelectionFileOptionTest.GivesErrorWithNonExistentFile (0 ms) 33: [ RUN ] SelectionFileOptionTest.GivesErrorWithMultipleFiles 33: [ OK ] SelectionFileOptionTest.GivesErrorWithMultipleFiles (0 ms) -33: [----------] 9 tests from SelectionFileOptionTest (4 ms total) +33: [----------] 9 tests from SelectionFileOptionTest (5 ms total) 33: 33: [----------] Global test environment tear-down -33: [==========] 190 tests from 10 test cases ran. (319 ms total) +33: [==========] 190 tests from 10 test cases ran. (313 ms total) 33: [ PASSED ] 190 tests. 33/40 Test #33: SelectionUnitTests ............... Passed 0.34 sec test 34 @@ -17912,7 +17932,7 @@ 34: Total number of atoms in clusters = 8 34: cmid: 2, cmax: 4, max_size: 2 34: 50%100%cmid: 2, cmax: 6, max_size: 2 -34: 50%100%[ OK ] ClustsizeTest.MolDefaultCutoff (7 ms) +34: 50%100%[ OK ] ClustsizeTest.MolDefaultCutoff (8 ms) 34: [ RUN ] ClustsizeTest.MolShortCutoff 34: Reading frames from pdb file Reading frame 0 time 0.000 Reading file /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 34: Reading file /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) @@ -17931,11 +17951,11 @@ 34: cmid: 2, cmax: 4, max_size: 2 34: 50%100%cmid: 2, cmax: 6, max_size: 2 34: 50%100%[ OK ] ClustsizeTest.MolCSize (3 ms) -34: [----------] 5 tests from ClustsizeTest (18 ms total) +34: [----------] 5 tests from ClustsizeTest (19 ms total) 34: 34: [----------] 4 tests from TrajectoryAnalysisCommandLineRunnerTest 34: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.WritesHelp -34: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.WritesHelp (2 ms) +34: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.WritesHelp (1 ms) 34: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.RunsWithSubsetTrajectory 34: Reading frames from gro file 'Test system', 8 atoms. 34: Reading frame 0 time 0.000 @@ -17971,10 +17991,10 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.DetectsIncorrectTrajectorySubset (9 ms) +34: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.DetectsIncorrectTrajectorySubset (5 ms) 34: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.FailsWithTrajectorySubsetWithoutTrajectory -34: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.FailsWithTrajectorySubsetWithoutTrajectory (0 ms) -34: [----------] 4 tests from TrajectoryAnalysisCommandLineRunnerTest (16 ms total) +34: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.FailsWithTrajectorySubsetWithoutTrajectory (1 ms) +34: [----------] 4 tests from TrajectoryAnalysisCommandLineRunnerTest (12 ms total) 34: 34: [----------] 11 tests from AngleModuleTest 34: [ RUN ] AngleModuleTest.ComputesSimpleAngles @@ -17993,7 +18013,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] AngleModuleTest.ComputesSimpleAngles (6 ms) +34: [ OK ] AngleModuleTest.ComputesSimpleAngles (10 ms) 34: [ RUN ] AngleModuleTest.ComputesDihedrals 34: 34: WARNING: If there are molecules in the input trajectory file @@ -18044,7 +18064,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] AngleModuleTest.ComputesVectorPlanePairAngles (6 ms) +34: [ OK ] AngleModuleTest.ComputesVectorPlanePairAngles (5 ms) 34: [ RUN ] AngleModuleTest.ComputesPlaneZAxisAngles 34: 34: WARNING: If there are molecules in the input trajectory file @@ -18061,7 +18081,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] AngleModuleTest.ComputesPlaneZAxisAngles (5 ms) +34: [ OK ] AngleModuleTest.ComputesPlaneZAxisAngles (9 ms) 34: [ RUN ] AngleModuleTest.ComputesVectorSphereNormalZAxisAngles 34: 34: WARNING: If there are molecules in the input trajectory file @@ -18097,7 +18117,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] AngleModuleTest.ComputesVectorTimeZeroAngles (5 ms) +34: [ OK ] AngleModuleTest.ComputesVectorTimeZeroAngles (6 ms) 34: [ RUN ] AngleModuleTest.ComputesMultipleAngles 34: 34: WARNING: If there are molecules in the input trajectory file @@ -18166,7 +18186,7 @@ 34: files if necessary. 34: 34: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorGroupsAngles (5 ms) -34: [----------] 11 tests from AngleModuleTest (58 ms total) +34: [----------] 11 tests from AngleModuleTest (69 ms total) 34: 34: [----------] 3 tests from DistanceModuleTest 34: [ RUN ] DistanceModuleTest.ComputesDistances @@ -18189,7 +18209,7 @@ 34: Number of samples: 5 34: Average distance: 1.43246 nm 34: Standard deviation: 0.96700 nm -34: [ OK ] DistanceModuleTest.ComputesDistances (6 ms) +34: [ OK ] DistanceModuleTest.ComputesDistances (7 ms) 34: [ RUN ] DistanceModuleTest.ComputesMultipleDistances 34: 34: WARNING: If there are molecules in the input trajectory file @@ -18300,7 +18320,7 @@ 34: Molecular volume Vm assuming homogeneity: 0.2027 +/- 0.0000 nm^3 34: Molecular van der Waals volume assuming homogeneity: 0.1256 +/- 0.0000 nm^3 34: Fractional free volume 0.194 +/- 0.000 -34: [ OK ] FreeVolumeModuleTest.ComputesFreeVolume (186 ms) +34: [ OK ] FreeVolumeModuleTest.ComputesFreeVolume (197 ms) 34: [ RUN ] FreeVolumeModuleTest.ComputesFreeVolumeSelection 34: Reading file /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) 34: Reading file /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) @@ -18352,8 +18372,8 @@ 34: Molecular volume Vm assuming homogeneity: 0.2027 +/- 0.0000 nm^3 34: Molecular van der Waals volume assuming homogeneity: 0.1247 +/- 0.0000 nm^3 34: Fractional free volume 0.200 +/- 0.000 -34: [ OK ] FreeVolumeModuleTest.ComputesFreeVolumeSelection (185 ms) -34: [----------] 2 tests from FreeVolumeModuleTest (371 ms total) +34: [ OK ] FreeVolumeModuleTest.ComputesFreeVolumeSelection (191 ms) +34: [----------] 2 tests from FreeVolumeModuleTest (388 ms total) 34: 34: [----------] 7 tests from PairDistanceModuleTest 34: [ RUN ] PairDistanceModuleTest.ComputesAllDistances @@ -18372,7 +18392,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] PairDistanceModuleTest.ComputesAllDistances (5 ms) +34: [ OK ] PairDistanceModuleTest.ComputesAllDistances (6 ms) 34: [ RUN ] PairDistanceModuleTest.ComputesAllDistancesWithCutoff 34: 34: WARNING: If there are molecules in the input trajectory file @@ -18406,7 +18426,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] PairDistanceModuleTest.ComputesMinDistanceWithCutoff (5 ms) +34: [ OK ] PairDistanceModuleTest.ComputesMinDistanceWithCutoff (6 ms) 34: [ RUN ] PairDistanceModuleTest.ComputesMaxDistance 34: 34: WARNING: If there are molecules in the input trajectory file @@ -18423,7 +18443,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] PairDistanceModuleTest.ComputesMaxDistance (4 ms) +34: [ OK ] PairDistanceModuleTest.ComputesMaxDistance (5 ms) 34: [ RUN ] PairDistanceModuleTest.ComputesMaxDistanceWithCutoff 34: 34: WARNING: If there are molecules in the input trajectory file @@ -18475,7 +18495,7 @@ 34: files if necessary. 34: 34: [ OK ] PairDistanceModuleTest.ComputesGroupedMaxDistanceWithCutoff (5 ms) -34: [----------] 7 tests from PairDistanceModuleTest (34 ms total) +34: [----------] 7 tests from PairDistanceModuleTest (38 ms total) 34: 34: [----------] 5 tests from RdfModuleTest 34: [ RUN ] RdfModuleTest.BasicTest @@ -18499,7 +18519,7 @@ 34: Reading frames from gro file '216H2O,WATJP01,SPC216,SPC-MODEL,300K,BOX(M)=1.86206NM,WFVG,MAR. 1984', 648 atoms. 34: Reading frame 0 time 0.000 Last frame 0 time 0.000 34: Analyzed 1 frames, last time 0.000 -34: [ OK ] RdfModuleTest.SelectionsSolelyFromIndexFileWork (30 ms) +34: [ OK ] RdfModuleTest.SelectionsSolelyFromIndexFileWork (29 ms) 34: [ RUN ] RdfModuleTest.SelectionsFromBothTopologyFileAndIndexFileWork 34: 34: WARNING: If there are molecules in the input trajectory file @@ -18533,7 +18553,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] RdfModuleTest.CalculatesSurf (19 ms) +34: [ OK ] RdfModuleTest.CalculatesSurf (21 ms) 34: [ RUN ] RdfModuleTest.CalculatesXY 34: 34: WARNING: If there are molecules in the input trajectory file @@ -18550,8 +18570,8 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] RdfModuleTest.CalculatesXY (44 ms) -34: [----------] 5 tests from RdfModuleTest (170 ms total) +34: [ OK ] RdfModuleTest.CalculatesXY (45 ms) +34: [----------] 5 tests from RdfModuleTest (172 ms total) 34: 34: [----------] 5 tests from SasaModuleTest 34: [ RUN ] SasaModuleTest.BasicTest @@ -18598,7 +18618,7 @@ 34: you providing a run input file. 34: 34: Analyzed topology coordinates -34: [ OK ] SasaModuleTest.BasicTest (19 ms) +34: [ OK ] SasaModuleTest.BasicTest (20 ms) 34: [ RUN ] SasaModuleTest.HandlesSelectedResidues 34: 34: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ @@ -18643,7 +18663,7 @@ 34: you providing a run input file. 34: 34: Analyzed topology coordinates -34: [ OK ] SasaModuleTest.HandlesSelectedResidues (11 ms) +34: [ OK ] SasaModuleTest.HandlesSelectedResidues (12 ms) 34: [ RUN ] SasaModuleTest.WritesConnollySurfaceWithSolute 34: 34: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ @@ -18733,7 +18753,7 @@ 34: you providing a run input file. 34: 34: Analyzed topology coordinates -34: [ OK ] SasaModuleTest.HandlesDynamicOutputGroup (14 ms) +34: [ OK ] SasaModuleTest.HandlesDynamicOutputGroup (15 ms) 34: [ RUN ] SasaModuleTest.HandlesDynamicCalculationGroup 34: 34: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ @@ -18778,8 +18798,8 @@ 34: you providing a run input file. 34: 34: Analyzed topology coordinates -34: [ OK ] SasaModuleTest.HandlesDynamicCalculationGroup (14 ms) -34: [----------] 5 tests from SasaModuleTest (73 ms total) +34: [ OK ] SasaModuleTest.HandlesDynamicCalculationGroup (15 ms) +34: [----------] 5 tests from SasaModuleTest (76 ms total) 34: 34: [----------] 8 tests from SelectModuleTest 34: [ RUN ] SelectModuleTest.BasicTest @@ -18800,7 +18820,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] SelectModuleTest.BasicTest (8 ms) +34: [ OK ] SelectModuleTest.BasicTest (10 ms) 34: [ RUN ] SelectModuleTest.HandlesPDBOutputWithNonPDBInput 34: Reading frames from gro file 'Test system', 15 atoms. 34: Reading frame 0 time 0.000 @@ -18819,7 +18839,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] SelectModuleTest.HandlesPDBOutputWithNonPDBInput (7 ms) +34: [ OK ] SelectModuleTest.HandlesPDBOutputWithNonPDBInput (8 ms) 34: [ RUN ] SelectModuleTest.HandlesPDBOutputWithPDBInput 34: Reading frames from gro file 'Test system', 15 atoms. 34: Reading frame 0 time 0.000 @@ -18838,7 +18858,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] SelectModuleTest.HandlesPDBOutputWithPDBInput (8 ms) +34: [ OK ] SelectModuleTest.HandlesPDBOutputWithPDBInput (7 ms) 34: [ RUN ] SelectModuleTest.HandlesMaxPDBOutput 34: Reading frames from gro file 'Test system', 15 atoms. 34: Reading frame 0 time 0.000 @@ -18857,7 +18877,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] SelectModuleTest.HandlesMaxPDBOutput (7 ms) +34: [ OK ] SelectModuleTest.HandlesMaxPDBOutput (8 ms) 34: [ RUN ] SelectModuleTest.HandlesSelectedPDBOutput 34: Reading frames from gro file 'Test system', 15 atoms. 34: Reading frame 0 time 0.000 @@ -18876,7 +18896,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] SelectModuleTest.HandlesSelectedPDBOutput (7 ms) +34: [ OK ] SelectModuleTest.HandlesSelectedPDBOutput (8 ms) 34: [ RUN ] SelectModuleTest.NormalizesSizes 34: 34: WARNING: If there are molecules in the input trajectory file @@ -18928,17 +18948,17 @@ 34: files if necessary. 34: 34: [ OK ] SelectModuleTest.WritesResidueIndices (4 ms) -34: [----------] 8 tests from SelectModuleTest (52 ms total) +34: [----------] 8 tests from SelectModuleTest (57 ms total) 34: 34: [----------] 10 tests from SurfaceAreaTest 34: [ RUN ] SurfaceAreaTest.ComputesSinglePoint -34: [ OK ] SurfaceAreaTest.ComputesSinglePoint (1 ms) +34: [ OK ] SurfaceAreaTest.ComputesSinglePoint (0 ms) 34: [ RUN ] SurfaceAreaTest.ComputesTwoPoints -34: [ OK ] SurfaceAreaTest.ComputesTwoPoints (1 ms) +34: [ OK ] SurfaceAreaTest.ComputesTwoPoints (2 ms) 34: [ RUN ] SurfaceAreaTest.ComputesTwoPointsOfUnequalRadius -34: [ OK ] SurfaceAreaTest.ComputesTwoPointsOfUnequalRadius (1 ms) +34: [ OK ] SurfaceAreaTest.ComputesTwoPointsOfUnequalRadius (2 ms) 34: [ RUN ] SurfaceAreaTest.SurfacePoints12 -34: [ OK ] SurfaceAreaTest.SurfacePoints12 (1 ms) +34: [ OK ] SurfaceAreaTest.SurfacePoints12 (0 ms) 34: [ RUN ] SurfaceAreaTest.SurfacePoints32 34: [ OK ] SurfaceAreaTest.SurfacePoints32 (0 ms) 34: [ RUN ] SurfaceAreaTest.SurfacePoints42 @@ -18948,7 +18968,7 @@ 34: [ RUN ] SurfaceAreaTest.Computes100Points 34: [ OK ] SurfaceAreaTest.Computes100Points (1 ms) 34: [ RUN ] SurfaceAreaTest.Computes100PointsWithRectangularPBC -34: [ OK ] SurfaceAreaTest.Computes100PointsWithRectangularPBC (4 ms) +34: [ OK ] SurfaceAreaTest.Computes100PointsWithRectangularPBC (3 ms) 34: [ RUN ] SurfaceAreaTest.Computes100PointsWithTriclinicPBC 34: [ OK ] SurfaceAreaTest.Computes100PointsWithTriclinicPBC (4 ms) 34: [----------] 10 tests from SurfaceAreaTest (16 ms total) @@ -18989,7 +19009,7 @@ 34: For a correct single-point energy evaluation with nsteps = 0, use 34: continuation = yes to avoid constraining the input coordinates. 34: -34: Setting the LD random seed to 824489530 +34: Setting the LD random seed to 2076816578 34: Generated 330891 of the 330891 non-bonded parameter combinations 34: Generating 1-4 interactions: fudge = 0.5 34: Generated 330891 of the 330891 1-4 parameter combinations @@ -19024,8 +19044,8 @@ 34: There are: 10 Protein residues 34: Analysing Protein... 34: This run will generate roughly 0 Mb of data -34: [ OK ] TopologyInformation.WorksWithTprFromPdbFile (347 ms) -34: [----------] 4 tests from TopologyInformation (357 ms total) +34: [ OK ] TopologyInformation.WorksWithTprFromPdbFile (357 ms) +34: [----------] 4 tests from TopologyInformation (367 ms total) 34: 34: [----------] 4 tests from TrajectoryModuleTest 34: [ RUN ] TrajectoryModuleTest.BasicTest @@ -19046,7 +19066,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] TrajectoryModuleTest.BasicTest (7 ms) +34: [ OK ] TrajectoryModuleTest.BasicTest (6 ms) 34: [ RUN ] TrajectoryModuleTest.PlotsXOnly 34: Reading frames from gro file 'Test system', 15 atoms. 34: Reading frame 0 time 0.000 @@ -19103,12 +19123,12 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] TrajectoryModuleTest.HandlesNoForces (5 ms) +34: [ OK ] TrajectoryModuleTest.HandlesNoForces (6 ms) 34: [----------] 4 tests from TrajectoryModuleTest (23 ms total) 34: 34: [----------] 5 tests from UnionFinderTest 34: [ RUN ] UnionFinderTest.WorksEmpty -34: [ OK ] UnionFinderTest.WorksEmpty (1 ms) +34: [ OK ] UnionFinderTest.WorksEmpty (0 ms) 34: [ RUN ] UnionFinderTest.BasicMerges 34: [ OK ] UnionFinderTest.BasicMerges (0 ms) 34: [ RUN ] UnionFinderTest.LargerMerges @@ -19117,7 +19137,7 @@ 34: [ OK ] UnionFinderTest.LongRightMerge (0 ms) 34: [ RUN ] UnionFinderTest.LongLeftMerge 34: [ OK ] UnionFinderTest.LongLeftMerge (0 ms) -34: [----------] 5 tests from UnionFinderTest (1 ms total) +34: [----------] 5 tests from UnionFinderTest (0 ms total) 34: 34: [----------] 1 test from MappedUnionFinderTest 34: [ RUN ] MappedUnionFinderTest.BasicMerges @@ -19125,9 +19145,9 @@ 34: [----------] 1 test from MappedUnionFinderTest (0 ms total) 34: 34: [----------] Global test environment tear-down -34: [==========] 74 tests from 14 test cases ran. (1211 ms total) +34: [==========] 74 tests from 14 test cases ran. (1258 ms total) 34: [ PASSED ] 74 tests. -34/40 Test #34: TrajectoryAnalysisUnitTests ...... Passed 1.23 sec +34/40 Test #34: TrajectoryAnalysisUnitTests ...... Passed 1.28 sec test 35 Start 35: EnergyAnalysisUnitTests @@ -19144,8 +19164,8 @@ 35: 35: 35: Wrote 8 lambda values with 101 samples as 808 dH data blocks to /build/gromacs-2019.1/build/basic/src/gromacs/energyanalysis/tests/Testing/Temporary/DhdlTest_ExtractDhdl_dhdl.xvg -35: [ OK ] DhdlTest.ExtractDhdl (18 ms) -35: [----------] 1 test from DhdlTest (19 ms total) +35: [ OK ] DhdlTest.ExtractDhdl (19 ms) +35: [----------] 1 test from DhdlTest (20 ms total) 35: 35: [----------] 1 test from OriresTest 35: [ RUN ] OriresTest.ExtractOrires @@ -19157,7 +19177,7 @@ 35: Selecting all 7 orientation restraints 35: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.002 Reading energy frame 2 time 0.004 Reading energy frame 3 time 0.006 Reading energy frame 4 time 0.008 Reading energy frame 5 time 0.010 Reading energy frame 6 time 0.012 Reading energy frame 7 time 0.014 Reading energy frame 8 time 0.016 Reading energy frame 9 time 0.018 Reading energy frame 10 time 0.020 Last energy frame read 10 time 0.020 35: [ OK ] OriresTest.ExtractOrires (15 ms) -35: [----------] 1 test from OriresTest (16 ms total) +35: [----------] 1 test from OriresTest (15 ms total) 35: 35: [----------] 3 tests from EnergyTest 35: [ RUN ] EnergyTest.ExtractEnergy @@ -19188,7 +19208,7 @@ 35: Potential -34142.2 39 228.993 -62.8906 (kJ/mol) 35: Kinetic En. 6132.38 0.42 119.428 -0.266996 (kJ/mol) 35: Total Energy -28009.8 39 258.637 -63.1577 (kJ/mol) -35: [ OK ] EnergyTest.ExtractEnergy (4 ms) +35: [ OK ] EnergyTest.ExtractEnergy (5 ms) 35: [ RUN ] EnergyTest.ExtractEnergyByNumber 35: Opened /build/gromacs-2019.1/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file 35: @@ -19217,7 +19237,7 @@ 35: Coul. recip. 302.771 2.8 17.5152 12.5403 (kJ/mol) 35: Kinetic En. 6132.38 0.42 119.428 -0.266996 (kJ/mol) 35: Pres. DC -268.49 3 8.52175 13.2804 (bar) -35: [ OK ] EnergyTest.ExtractEnergyByNumber (4 ms) +35: [ OK ] EnergyTest.ExtractEnergyByNumber (9 ms) 35: [ RUN ] EnergyTest.ExtractEnergyMixed 35: Opened /build/gromacs-2019.1/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file 35: @@ -19247,8 +19267,8 @@ 35: Pressure 5.34371 4.1 605.307 -4.88771 (bar) 35: Box-Z 2.92457 0.0054 0.0151558 0.0234974 (nm) 35: Volume 25.0162 0.14 0.386769 0.598615 (nm^3) -35: [ OK ] EnergyTest.ExtractEnergyMixed (10 ms) -35: [----------] 3 tests from EnergyTest (19 ms total) +35: [ OK ] EnergyTest.ExtractEnergyMixed (6 ms) +35: [----------] 3 tests from EnergyTest (20 ms total) 35: 35: [----------] 2 tests from ViscosityTest 35: [ RUN ] ViscosityTest.EinsteinViscosity @@ -19272,7 +19292,7 @@ 35: Temperature 300.001 0.02 5.8425 -0.0130558 (K) 35: Volume 25.0162 0.14 0.386769 0.598615 (nm^3) 35: Pressure 5.34371 4.1 605.307 -4.88771 (bar) -35: [ OK ] ViscosityTest.EinsteinViscosity (108 ms) +35: [ OK ] ViscosityTest.EinsteinViscosity (133 ms) 35: [ RUN ] ViscosityTest.EinsteinViscosityIntegral 35: Opened /build/gromacs-2019.1/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file 35: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.200 Reading energy frame 2 time 0.400 Reading energy frame 3 time 0.600 Reading energy frame 4 time 0.800 Reading energy frame 5 time 1.000 Reading energy frame 6 time 1.200 Reading energy frame 7 time 1.400 Reading energy frame 8 time 1.600 Reading energy frame 9 time 1.800 Reading energy frame 10 time 2.000 Reading energy frame 11 time 2.200 Reading energy frame 12 time 2.400 Reading energy frame 13 time 2.600 Reading energy frame 14 time 2.800 Reading energy frame 15 time 3.000 Reading energy frame 16 time 3.200 Reading energy frame 17 time 3.400 Reading energy frame 18 time 3.600 Reading energy frame 19 time 3.800 Reading energy frame 20 time 4.000 Reading energy frame 30 time 6.000 Reading energy frame 40 time 8.000 Reading energy frame 50 time 10.000 Last energy frame read 50 time 10.000 @@ -19294,13 +19314,13 @@ 35: Temperature 300.001 0.02 5.8425 -0.0130558 (K) 35: Volume 25.0162 0.14 0.386769 0.598615 (nm^3) 35: Pressure 5.34371 4.1 605.307 -4.88771 (bar) -35: [ OK ] ViscosityTest.EinsteinViscosityIntegral (75 ms) -35: [----------] 2 tests from ViscosityTest (184 ms total) +35: [ OK ] ViscosityTest.EinsteinViscosityIntegral (43 ms) +35: [----------] 2 tests from ViscosityTest (176 ms total) 35: 35: [----------] Global test environment tear-down -35: [==========] 7 tests from 4 test cases ran. (238 ms total) +35: [==========] 7 tests from 4 test cases ran. (232 ms total) 35: [ PASSED ] 7 tests. -35/40 Test #35: EnergyAnalysisUnitTests .......... Passed 0.26 sec +35/40 Test #35: EnergyAnalysisUnitTests .......... Passed 0.25 sec test 36 Start 36: ToolUnitTests @@ -19310,7 +19330,7 @@ 36: [----------] Global test environment set-up. 36: [----------] 4 tests from ReportMethodsTest 36: [ RUN ] ReportMethodsTest.WritesCorrectHeadersFormated -36: [ OK ] ReportMethodsTest.WritesCorrectHeadersFormated (0 ms) +36: [ OK ] ReportMethodsTest.WritesCorrectHeadersFormated (1 ms) 36: [ RUN ] ReportMethodsTest.WritesCorrectHeadersUnformatted 36: [ OK ] ReportMethodsTest.WritesCorrectHeadersUnformatted (0 ms) 36: [ RUN ] ReportMethodsTest.WritesCorrectInformation @@ -19326,7 +19346,7 @@ 36: For a correct single-point energy evaluation with nsteps = 0, use 36: continuation = yes to avoid constraining the input coordinates. 36: -36: Setting the LD random seed to 568289616 +36: Setting the LD random seed to -1920326513 36: Generated 330891 of the 330891 non-bonded parameter combinations 36: Generating 1-4 interactions: fudge = 0.5 36: Generated 330891 of the 330891 1-4 parameter combinations @@ -19360,7 +19380,7 @@ 36: There are: 10 Protein residues 36: Analysing Protein... 36: This run will generate roughly 0 Mb of data -36: [ OK ] ReportMethodsTest.WritesCorrectInformation (386 ms) +36: [ OK ] ReportMethodsTest.WritesCorrectInformation (396 ms) 36: [ RUN ] ReportMethodsTest.ToolEndToEndTest 36: 36: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/gromacs/tools/tests/Testing/Temporary/ReportMethodsTest_ToolEndToEndTest_lysozyme.mdp, line 1]: @@ -19374,7 +19394,7 @@ 36: For a correct single-point energy evaluation with nsteps = 0, use 36: continuation = yes to avoid constraining the input coordinates. 36: -36: Setting the LD random seed to 1159543049 +36: Setting the LD random seed to -120557456 36: Generated 330891 of the 330891 non-bonded parameter combinations 36: Generating 1-4 interactions: fudge = 0.5 36: Generated 330891 of the 330891 1-4 parameter combinations @@ -19418,13 +19438,13 @@ 36: The Cut-off algorithm was used for electrostatic interactions. 36: with a cut-off of 1 nm. 36: A single cut-off of 1.1 nm was used for Van der Waals interactions. -36: [ OK ] ReportMethodsTest.ToolEndToEndTest (375 ms) -36: [----------] 4 tests from ReportMethodsTest (761 ms total) +36: [ OK ] ReportMethodsTest.ToolEndToEndTest (379 ms) +36: [----------] 4 tests from ReportMethodsTest (776 ms total) 36: 36: [----------] Global test environment tear-down -36: [==========] 4 tests from 1 test case ran. (761 ms total) +36: [==========] 4 tests from 1 test case ran. (776 ms total) 36: [ PASSED ] 4 tests. -36/40 Test #36: ToolUnitTests .................... Passed 0.78 sec +36/40 Test #36: ToolUnitTests .................... Passed 0.80 sec test 37 Start 37: MdrunTests @@ -19446,7 +19466,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to -999089724 +37: Setting the LD random seed to -102140400 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -19470,8 +19490,8 @@ 37: Set rlist, assuming 4x4 atom pair-list, to 1.056 nm, buffer size 0.056 nm 37: Note that mdrun will redetermine rlist based on the actual pair-list setup 37: This run will generate roughly 0 Mb of data -37: [ OK ] GromppTest.EmptyMdpFileWorks (48 ms) -37: [----------] 1 test from GromppTest (48 ms total) +37: [ OK ] GromppTest.EmptyMdpFileWorks (52 ms) +37: [----------] 1 test from GromppTest (52 ms total) 37: 37: [----------] 1 test from ImdTest 37: [ RUN ] ImdTest.ImdCanRun @@ -19480,7 +19500,7 @@ 37: The Berendsen thermostat does not generate the correct kinetic energy 37: distribution. You might want to consider using the V-rescale thermostat. 37: -37: Setting the LD random seed to 1558045135 +37: Setting the LD random seed to 1582329975 37: Generated 3 of the 3 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 3 of the 3 1-4 parameter combinations @@ -19512,7 +19532,7 @@ 37: IMD: Pulling from IMD remote is enabled (-imdpull). 37: IMD: Turning on IMD - port for incoming requests is 0. 37: IMD: Setting up incoming socket. -37: IMD: Listening for IMD connection on port 39491. +37: IMD: Listening for IMD connection on port 38787. 37: IMD: -imdwait not set, starting simulation. 37: starting mdrun 'spc2' 37: 2 steps, 0.0 ps. @@ -19525,15 +19545,15 @@ 37: 37: Writing final coordinates. 37: -37: NOTE: 69 % of the run time was spent in pair search, +37: NOTE: 74 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.015 0.008 198.0 +37: Time: 0.019 0.010 198.3 37: (ns/day) (hour/ns) -37: Performance: 132.860 0.181 -37: [ OK ] ImdTest.ImdCanRun (79 ms) -37: [----------] 1 test from ImdTest (79 ms total) +37: Performance: 106.267 0.226 +37: [ OK ] ImdTest.ImdCanRun (62 ms) +37: [----------] 1 test from ImdTest (62 ms total) 37: 37: [----------] 2 tests from PmeTest 37: [ RUN ] PmeTest.ReproducesEnergies @@ -19544,7 +19564,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to -362500564 +37: Setting the LD random seed to -1931376354 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -19588,9 +19608,9 @@ 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.055 0.028 199.4 +37: Time: 0.483 0.242 199.9 37: (ns/day) (hour/ns) -37: Performance: 65.565 0.366 +37: Performance: 7.503 3.199 37: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeAuto.edr as single precision energy file 37: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies.tpr, VERSION 2019.1 (single precision) 37: Can not increase nstlist because an NVE ensemble is used @@ -19608,9 +19628,9 @@ 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.059 0.029 199.5 +37: Time: 0.080 0.040 199.5 37: (ns/day) (hour/ns) -37: Performance: 61.580 0.390 +37: Performance: 45.002 0.533 37: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpu.edr as single precision energy file 37: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies.tpr, VERSION 2019.1 (single precision) 37: Can not increase nstlist because an NVE ensemble is used @@ -19628,11 +19648,11 @@ 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.055 0.028 199.3 +37: Time: 0.224 0.112 199.8 37: (ns/day) (hour/ns) -37: Performance: 65.409 0.367 +37: Performance: 16.155 1.486 37: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpuTune.edr as single precision energy file -37: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (10175 ms) +37: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (10483 ms) 37: [ RUN ] PmeTest.ScalesTheBox 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBox_input.mdp, line 12]: @@ -19646,7 +19666,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to 1904877146 +37: Setting the LD random seed to -85104781 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -19681,13 +19701,10 @@ 37: starting mdrun 'spc-and-methanol' 37: 0 steps, 0.0 ps. 37: -37: NOTE: 12 % of the run time was spent in pair search, -37: you might want to increase nstlist (this has no effect on accuracy) -37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.010 0.005 194.5 +37: Time: 0.053 0.027 198.9 37: (ns/day) (hour/ns) -37: Performance: 17.462 1.374 +37: Performance: 3.233 7.424 37: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBox_spc-and-methanol_PmeOnCpu.edr as single precision energy file 37: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 966.268 K 37: Calculated rlist for 1x1 atom pair-list as 1.000 nm, buffer size 0.000 nm @@ -19696,8 +19713,8 @@ 37: Calculating fourier grid dimensions for X Y Z 37: Using a fourier grid of 28x28x128, spacing 0.108 0.108 0.118 37: This run will generate roughly 0 Mb of data -37: [ OK ] PmeTest.ScalesTheBox (32081 ms) -37: [----------] 2 tests from PmeTest (42256 ms total) +37: [ OK ] PmeTest.ScalesTheBox (31948 ms) +37: [----------] 2 tests from PmeTest (42431 ms total) 37: 37: [----------] 1 test from CompelTest 37: [ RUN ] CompelTest.SwapCanRun @@ -19706,7 +19723,7 @@ 37: The Berendsen thermostat does not generate the correct kinetic energy 37: distribution. You might want to consider using the V-rescale thermostat. 37: -37: Setting the LD random seed to -1546668422 +37: Setting the LD random seed to -1944235027 37: Generated 330891 of the 330891 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 330891 of the 330891 1-4 parameter combinations @@ -19766,9 +19783,9 @@ 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.823 0.412 199.9 +37: Time: 0.780 0.390 199.9 37: (ns/day) (hour/ns) -37: Performance: 3.148 7.625 +37: Performance: 3.322 7.225 37: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/CompelTest_SwapCanRun.tpr, VERSION 2019.1 (single precision) 37: Overriding nsteps with value passed on the command line: 2 steps, 0.01 ps 37: @@ -19791,15 +19808,15 @@ 37: 37: Writing final coordinates. 37: -37: NOTE: 25 % of the run time was spent in pair search, +37: NOTE: 23 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.571 0.285 199.9 +37: Time: 0.835 0.418 199.9 37: (ns/day) (hour/ns) -37: Performance: 4.540 5.287 -37: [ OK ] CompelTest.SwapCanRun (1345 ms) -37: [----------] 1 test from CompelTest (1345 ms total) +37: Performance: 3.103 7.734 +37: [ OK ] CompelTest.SwapCanRun (1482 ms) +37: [----------] 1 test from CompelTest (1482 ms total) 37: 37: [----------] 6 tests from BondedInteractionsTest 37: [ RUN ] BondedInteractionsTest.NormalBondWorks @@ -19815,7 +19832,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to -153886915 +37: Setting the LD random seed to 582621050 37: Generated 3 of the 3 non-bonded parameter combinations 37: Excluding 3 bonded neighbours molecule type 'butane' 37: Removing all charge groups because cutoff-scheme=Verlet @@ -19855,11 +19872,11 @@ 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.001 0.000 188.4 +37: Time: 0.001 0.001 188.7 37: (ns/day) (hour/ns) -37: Performance: 200.992 0.119 +37: Performance: 167.928 0.143 37: This run will generate roughly 0 Mb of data -37: [ OK ] BondedInteractionsTest.NormalBondWorks (14 ms) +37: [ OK ] BondedInteractionsTest.NormalBondWorks (10 ms) 37: [ RUN ] BondedInteractionsTest.TabulatedBondWorks 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedBondWorks_input.mdp, line 1]: @@ -19873,7 +19890,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to 1358110320 +37: Setting the LD random seed to 787842425 37: Generated 3 of the 3 non-bonded parameter combinations 37: Excluding 3 bonded neighbours molecule type 'butane' 37: Removing all charge groups because cutoff-scheme=Verlet @@ -19909,10 +19926,13 @@ 37: Reading frames from gro file 'A single butane', 4 atoms. 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: +37: NOTE: 18 % of the run time was spent in pair search, +37: you might want to increase nstlist (this has no effect on accuracy) +37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.001 0.001 191.7 +37: Time: 0.001 0.000 187.0 37: (ns/day) (hour/ns) -37: Performance: 124.918 0.192 +37: Performance: 177.293 0.135 37: This run will generate roughly 0 Mb of data 37: [ OK ] BondedInteractionsTest.TabulatedBondWorks (11 ms) 37: [ RUN ] BondedInteractionsTest.NormalAngleWorks @@ -19928,7 +19948,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to 740814072 +37: Setting the LD random seed to -1650835265 37: Generated 3 of the 3 non-bonded parameter combinations 37: Excluding 3 bonded neighbours molecule type 'butane' 37: Removing all charge groups because cutoff-scheme=Verlet @@ -19964,15 +19984,15 @@ 37: Reading frames from gro file 'A single butane', 4 atoms. 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: -37: NOTE: 16 % of the run time was spent in pair search, +37: NOTE: 17 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.001 0.000 188.3 +37: Time: 0.001 0.000 189.4 37: (ns/day) (hour/ns) -37: Performance: 221.644 0.108 +37: Performance: 178.516 0.134 37: This run will generate roughly 0 Mb of data -37: [ OK ] BondedInteractionsTest.NormalAngleWorks (9 ms) +37: [ OK ] BondedInteractionsTest.NormalAngleWorks (10 ms) 37: [ RUN ] BondedInteractionsTest.TabulatedAngleWorks 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedAngleWorks_input.mdp, line 1]: @@ -19986,7 +20006,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to -591171436 +37: Setting the LD random seed to -750809661 37: Generated 3 of the 3 non-bonded parameter combinations 37: Excluding 3 bonded neighbours molecule type 'butane' 37: Removing all charge groups because cutoff-scheme=Verlet @@ -20026,9 +20046,9 @@ 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.001 0.000 187.8 +37: Time: 0.001 0.001 188.2 37: (ns/day) (hour/ns) -37: Performance: 221.103 0.109 +37: Performance: 170.455 0.141 37: This run will generate roughly 0 Mb of data 37: [ OK ] BondedInteractionsTest.TabulatedAngleWorks (10 ms) 37: [ RUN ] BondedInteractionsTest.NormalDihedralWorks @@ -20044,7 +20064,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to -1972013051 +37: Setting the LD random seed to -2058302806 37: Generated 3 of the 3 non-bonded parameter combinations 37: Excluding 3 bonded neighbours molecule type 'butane' 37: Removing all charge groups because cutoff-scheme=Verlet @@ -20071,15 +20091,15 @@ 37: Reading frames from gro file 'A single butane', 4 atoms. 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: -37: NOTE: 11 % of the run time was spent in pair search, +37: NOTE: 24 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.002 0.001 193.1 +37: Time: 0.001 0.001 189.4 37: (ns/day) (hour/ns) -37: Performance: 106.117 0.226 +37: Performance: 160.349 0.150 37: This run will generate roughly 0 Mb of data -37: [ OK ] BondedInteractionsTest.NormalDihedralWorks (9 ms) +37: [ OK ] BondedInteractionsTest.NormalDihedralWorks (10 ms) 37: [ RUN ] BondedInteractionsTest.TabulatedDihedralWorks 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedDihedralWorks_input.mdp, line 1]: @@ -20093,7 +20113,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to -1164245216 +37: Setting the LD random seed to 650987097 37: Generated 3 of the 3 non-bonded parameter combinations 37: Excluding 3 bonded neighbours molecule type 'butane' 37: Removing all charge groups because cutoff-scheme=Verlet @@ -20124,12 +20144,12 @@ 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.001 0.001 189.8 +37: Time: 0.001 0.001 189.5 37: (ns/day) (hour/ns) -37: Performance: 159.361 0.151 +37: Performance: 161.133 0.149 37: This run will generate roughly 0 Mb of data -37: [ OK ] BondedInteractionsTest.TabulatedDihedralWorks (16 ms) -37: [----------] 6 tests from BondedInteractionsTest (69 ms total) +37: [ OK ] BondedInteractionsTest.TabulatedDihedralWorks (12 ms) +37: [----------] 6 tests from BondedInteractionsTest (63 ms total) 37: 37: [----------] 2 tests from MdrunTerminationTest 37: [ RUN ] MdrunTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts @@ -20140,7 +20160,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to 1461319412 +37: Setting the LD random seed to -1168572461 37: Generated 3 of the 3 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 3 of the 3 1-4 parameter combinations @@ -20176,13 +20196,13 @@ 37: Note that mdrun will redetermine rlist based on the actual pair-list setup 37: This run will generate roughly 0 Mb of data 37: -37: NOTE: 58 % of the run time was spent in pair search, +37: NOTE: 49 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.006 0.003 195.2 +37: Time: 0.006 0.003 194.7 37: (ns/day) (hour/ns) -37: Performance: 55.722 0.431 +37: Performance: 55.915 0.429 37: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts.tpr, VERSION 2019.1 (single precision) 37: Overriding nsteps with value passed on the command line: 2 steps, 0.002 ps 37: Changing nstlist from 10 to 80, rlist from 1.024 to 1.244 @@ -20202,9 +20222,9 @@ 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.002 0.001 189.9 +37: Time: 0.003 0.001 189.8 37: (ns/day) (hour/ns) -37: Performance: 204.239 0.118 +37: Performance: 172.840 0.139 37: [ OK ] MdrunTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts (18 ms) 37: [ RUN ] MdrunTerminationTest.CheckpointRestartWorksWithNoAppend 37: @@ -20214,7 +20234,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to 1001848293 +37: Setting the LD random seed to 930380434 37: Generated 3 of the 3 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 3 of the 3 1-4 parameter combinations @@ -20243,17 +20263,20 @@ 37: starting mdrun 'spc2' 37: 100 steps, 0.1 ps. 37: -37: Step 2: Run time exceeded 0.000 hours, will terminate the run within 2 steps +37: Step 1: Run time exceeded 0.000 hours, will terminate the run within 2 steps 37: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 37: Calculated rlist for 1x1 atom pair-list as 1.026 nm, buffer size 0.026 nm 37: Set rlist, assuming 4x4 atom pair-list, to 1.024 nm, buffer size 0.024 nm 37: Note that mdrun will redetermine rlist based on the actual pair-list setup 37: This run will generate roughly 0 Mb of data 37: +37: NOTE: 11 % of the run time was spent in pair search, +37: you might want to increase nstlist (this has no effect on accuracy) +37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.004 0.002 193.3 +37: Time: 0.003 0.002 190.5 37: (ns/day) (hour/ns) -37: Performance: 162.670 0.148 +37: Performance: 164.448 0.146 37: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksWithNoAppend.tpr, VERSION 2019.1 (single precision) 37: Overriding nsteps with value passed on the command line: 2 steps, 0.002 ps 37: Changing nstlist from 10 to 80, rlist from 1.024 to 1.244 @@ -20268,17 +20291,17 @@ 37: This can lead to significant performance degradation. 37: Consider using -pin on (and -pinoffset in case you run multiple jobs). 37: starting mdrun 'spc2' -37: 5 steps, 0.0 ps (continuing from step 3, 0.0 ps). +37: 4 steps, 0.0 ps (continuing from step 2, 0.0 ps). 37: Checkpoint file is from part 1, new output files will be suffixed '.part0002'. 37: 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.003 0.001 195.2 +37: Time: 0.003 0.001 195.4 37: (ns/day) (hour/ns) -37: Performance: 198.171 0.121 -37: [ OK ] MdrunTerminationTest.CheckpointRestartWorksWithNoAppend (17 ms) -37: [----------] 2 tests from MdrunTerminationTest (35 ms total) +37: Performance: 182.533 0.131 +37: [ OK ] MdrunTerminationTest.CheckpointRestartWorksWithNoAppend (19 ms) +37: [----------] 2 tests from MdrunTerminationTest (37 ms total) 37: 37: [----------] 4 tests from MimicTest 37: [ RUN ] MimicTest.OneQuantumMol @@ -20294,7 +20317,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to 249477040 +37: Setting the LD random seed to 60438197 37: Generated 10 of the 10 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 10 of the 10 1-4 parameter combinations @@ -20333,12 +20356,12 @@ 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.001 0.000 188.8 +37: Time: 0.001 0.001 190.4 37: (ns/day) (hour/ns) -37: Performance: 181.103 0.133 +37: Performance: 144.493 0.166 37: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_OneQuantumMol.edr as single precision energy file 37: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -37: [ OK ] MimicTest.OneQuantumMol (10 ms) +37: [ OK ] MimicTest.OneQuantumMol (11 ms) 37: [ RUN ] MimicTest.AllQuantumMol 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_AllQuantumMol_input.mdp, line 3]: @@ -20352,7 +20375,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to 333902783 +37: Setting the LD random seed to -387251380 37: Generated 10 of the 10 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 10 of the 10 1-4 parameter combinations @@ -20387,16 +20410,16 @@ 37: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: -37: NOTE: 92 % of the run time was spent in pair search, +37: NOTE: 61 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.011 0.005 198.6 +37: Time: 0.003 0.001 194.0 37: (ns/day) (hour/ns) -37: Performance: 16.343 1.469 +37: Performance: 67.047 0.358 37: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_AllQuantumMol.edr as single precision energy file 37: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -37: [ OK ] MimicTest.AllQuantumMol (15 ms) +37: [ OK ] MimicTest.AllQuantumMol (11 ms) 37: [ RUN ] MimicTest.TwoQuantumMol 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_TwoQuantumMol_input.mdp, line 3]: @@ -20410,7 +20433,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to 1933742016 +37: Setting the LD random seed to -1557802568 37: Generated 10 of the 10 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 10 of the 10 1-4 parameter combinations @@ -20445,16 +20468,16 @@ 37: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: -37: NOTE: 94 % of the run time was spent in pair search, +37: NOTE: 49 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.013 0.006 198.8 +37: Time: 0.003 0.002 195.3 37: (ns/day) (hour/ns) -37: Performance: 13.506 1.777 +37: Performance: 51.948 0.462 37: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_TwoQuantumMol.edr as single precision energy file 37: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -37: [ OK ] MimicTest.TwoQuantumMol (16 ms) +37: [ OK ] MimicTest.TwoQuantumMol (12 ms) 37: [ RUN ] MimicTest.BondCuts 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_BondCuts_input.mdp, line 3]: @@ -20468,7 +20491,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to 1582805337 +37: Setting the LD random seed to -155692442 37: Generated 2211 of the 2211 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 2211 of the 2211 1-4 parameter combinations @@ -20503,22 +20526,25 @@ 37: Reading frames from gro file 'Alanine dipeptide in water', 23 atoms. 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: +37: NOTE: 90 % of the run time was spent in pair search, +37: you might want to increase nstlist (this has no effect on accuracy) +37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.004 0.002 196.7 +37: Time: 0.015 0.008 198.6 37: (ns/day) (hour/ns) -37: Performance: 39.592 0.606 +37: Performance: 11.139 2.155 37: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_BondCuts.edr as single precision energy file 37: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 300.368 K 37: Calculated rlist for 1x1 atom pair-list as 1.034 nm, buffer size 0.034 nm 37: Set rlist, assuming 4x4 atom pair-list, to 1.025 nm, buffer size 0.025 nm 37: Note that mdrun will redetermine rlist based on the actual pair-list setup 37: This run will generate roughly 0 Mb of data -37: [ OK ] MimicTest.BondCuts (29 ms) -37: [----------] 4 tests from MimicTest (70 ms total) +37: [ OK ] MimicTest.BondCuts (31 ms) +37: [----------] 4 tests from MimicTest (65 ms total) 37: 37: [----------] 3 tests from WithDifferentOutputGroupSettings/MdrunCompressedXOutput 37: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/0 -37: Setting the LD random seed to -1322029493 +37: Setting the LD random seed to -780980970 37: Generated 3 of the 3 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 3 of the 3 1-4 parameter combinations @@ -20558,10 +20584,13 @@ 37: 37: Writing final coordinates. 37: +37: NOTE: 20 % of the run time was spent in pair search, +37: you might want to increase nstlist (this has no effect on accuracy) +37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.012 0.006 197.2 +37: Time: 0.004 0.002 192.7 37: (ns/day) (hour/ns) -37: Performance: 27.880 0.861 +37: Performance: 78.177 0.307 37: Reading frame 0 time 0.000 37: # Atoms 6 37: Reading frame 1 time 0.001 Last frame 1 time 0.001 @@ -20576,9 +20605,9 @@ 37: Forces 0 37: Box 2 0.001 37: Checking file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0.xtc -37: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/0 (16 ms) +37: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/0 (15 ms) 37: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/1 -37: Setting the LD random seed to -1987879968 +37: Setting the LD random seed to 2014965178 37: Generated 3 of the 3 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 3 of the 3 1-4 parameter combinations @@ -20619,9 +20648,9 @@ 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.003 0.002 191.2 +37: Time: 0.004 0.002 192.0 37: (ns/day) (hour/ns) -37: Performance: 98.757 0.243 +37: Performance: 81.794 0.293 37: Reading frame 0 time 0.000 37: # Atoms 6 37: Reading frame 1 time 0.001 Last frame 1 time 0.001 @@ -20636,9 +20665,9 @@ 37: Forces 0 37: Box 2 0.001 37: Checking file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1.xtc -37: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/1 (12 ms) +37: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/1 (14 ms) 37: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/2 -37: Setting the LD random seed to 1325585592 +37: Setting the LD random seed to -1543009185 37: Generated 3 of the 3 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 3 of the 3 1-4 parameter combinations @@ -20679,9 +20708,9 @@ 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.003 0.002 191.5 +37: Time: 0.003 0.002 190.0 37: (ns/day) (hour/ns) -37: Performance: 98.142 0.245 +37: Performance: 100.803 0.238 37: Reading frame 0 time 0.000 37: # Atoms 3 37: Reading frame 1 time 0.001 Last frame 1 time 0.001 @@ -20696,8 +20725,8 @@ 37: Forces 0 37: Box 2 0.001 37: Checking file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2.xtc -37: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/2 (12 ms) -37: [----------] 3 tests from WithDifferentOutputGroupSettings/MdrunCompressedXOutput (40 ms total) +37: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/2 (17 ms) +37: [----------] 3 tests from WithDifferentOutputGroupSettings/MdrunCompressedXOutput (46 ms total) 37: 37: [----------] 3 tests from Checking/InitialConstraintsTest 37: [ RUN ] Checking/InitialConstraintsTest.Works/0 @@ -20708,7 +20737,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to 2034292669 +37: Setting the LD random seed to -1501763271 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -20749,15 +20778,15 @@ 37: 37: Writing final coordinates. 37: -37: NOTE: 14 % of the run time was spent in pair search, +37: NOTE: 19 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.003 0.002 191.2 +37: Time: 0.004 0.002 191.8 37: (ns/day) (hour/ns) -37: Performance: 98.315 0.244 +37: Performance: 87.112 0.276 37: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0_spc-and-methanol.edr as single precision energy file -37: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/0 (42 ms) +37: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/0 (50 ms) 37: [ RUN ] Checking/InitialConstraintsTest.Works/1 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_input.mdp, line 13]: @@ -20766,7 +20795,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to -175983217 +37: Setting the LD random seed to 996571213 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -20807,15 +20836,15 @@ 37: 37: Writing final coordinates. 37: -37: NOTE: 72 % of the run time was spent in pair search, +37: NOTE: 21 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.011 0.006 197.3 +37: Time: 0.004 0.002 192.2 37: (ns/day) (hour/ns) -37: Performance: 29.920 0.802 +37: Performance: 84.414 0.284 37: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_spc-and-methanol.edr as single precision energy file -37: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/1 (43 ms) +37: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/1 (49 ms) 37: [ RUN ] Checking/InitialConstraintsTest.Works/2 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_input.mdp, line 13]: @@ -20829,7 +20858,7 @@ 37: Integrator method md-vv-avek is implemented primarily for validation 37: purposes; for molecular dynamics, you should probably be using md or md-vv 37: -37: Setting the LD random seed to 869555440 +37: Setting the LD random seed to 1393462234 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -20870,16 +20899,16 @@ 37: 37: Writing final coordinates. 37: -37: NOTE: 13 % of the run time was spent in pair search, +37: NOTE: 14 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.065 0.033 199.4 +37: Time: 0.004 0.002 191.6 37: (ns/day) (hour/ns) -37: Performance: 5.291 4.536 +37: Performance: 87.724 0.274 37: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_spc-and-methanol.edr as single precision energy file -37: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/2 (75 ms) -37: [----------] 3 tests from Checking/InitialConstraintsTest (160 ms total) +37: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/2 (49 ms) +37: [----------] 3 tests from Checking/InitialConstraintsTest (148 ms total) 37: 37: [----------] 3 tests from MdrunCanWrite/Trajectories 37: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/0 @@ -20890,7 +20919,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to 1152544163 +37: Setting the LD random seed to -1023872710 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -20925,11 +20954,14 @@ 37: 37: Writing final coordinates. 37: +37: NOTE: 15 % of the run time was spent in pair search, +37: you might want to increase nstlist (this has no effect on accuracy) +37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.108 0.054 199.7 +37: Time: 0.011 0.006 196.7 37: (ns/day) (hour/ns) -37: Performance: 11.192 2.144 -37: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/0 (111 ms) +37: Performance: 104.866 0.229 +37: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/0 (56 ms) 37: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/1 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_1_input.mdp, line 12]: @@ -20938,7 +20970,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to -1942664790 +37: Setting the LD random seed to 783677774 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -20973,11 +21005,14 @@ 37: 37: Writing final coordinates. 37: +37: NOTE: 53 % of the run time was spent in pair search, +37: you might want to increase nstlist (this has no effect on accuracy) +37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.100 0.050 199.6 +37: Time: 0.019 0.009 198.0 37: (ns/day) (hour/ns) -37: Performance: 12.044 1.993 -37: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/1 (98 ms) +37: Performance: 64.618 0.371 +37: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/1 (62 ms) 37: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/2 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_2_input.mdp, line 12]: @@ -20986,7 +21021,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to -1729794384 +37: Setting the LD random seed to -292887361 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -21021,12 +21056,15 @@ 37: 37: Writing final coordinates. 37: +37: NOTE: 51 % of the run time was spent in pair search, +37: you might want to increase nstlist (this has no effect on accuracy) +37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.099 0.050 199.6 +37: Time: 0.018 0.009 197.9 37: (ns/day) (hour/ns) -37: Performance: 12.168 1.972 -37: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/2 (99 ms) -37: [----------] 3 tests from MdrunCanWrite/Trajectories (309 ms total) +37: Performance: 66.127 0.363 +37: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/2 (60 ms) +37: [----------] 3 tests from MdrunCanWrite/Trajectories (178 ms total) 37: 37: [----------] 3 tests from MdrunCanWrite/NptTrajectories 37: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/0 @@ -21037,7 +21075,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to 952734545 +37: Setting the LD random seed to -2063280915 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -21072,14 +21110,11 @@ 37: 37: Writing final coordinates. 37: -37: NOTE: 10 % of the run time was spent in pair search, -37: you might want to increase nstlist (this has no effect on accuracy) -37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.051 0.026 199.2 +37: Time: 0.005 0.002 193.2 37: (ns/day) (hour/ns) -37: Performance: 10.120 2.372 -37: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/0 (74 ms) +37: Performance: 103.925 0.231 +37: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/0 (52 ms) 37: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/1 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_1_input.mdp, line 13]: @@ -21088,7 +21123,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to -1030158603 +37: Setting the LD random seed to -710907302 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -21123,14 +21158,14 @@ 37: 37: Writing final coordinates. 37: -37: NOTE: 10 % of the run time was spent in pair search, +37: NOTE: 72 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.051 0.025 199.2 +37: Time: 0.018 0.009 197.7 37: (ns/day) (hour/ns) -37: Performance: 10.220 2.348 -37: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/1 (73 ms) +37: Performance: 28.709 0.836 +37: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/1 (58 ms) 37: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/2 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_2_input.mdp, line 13]: @@ -21139,7 +21174,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to 1769870420 +37: Setting the LD random seed to 1083042807 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -21174,20 +21209,17 @@ 37: 37: Writing final coordinates. 37: -37: NOTE: 10 % of the run time was spent in pair search, -37: you might want to increase nstlist (this has no effect on accuracy) -37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.051 0.025 199.1 +37: Time: 0.005 0.002 192.4 37: (ns/day) (hour/ns) -37: Performance: 10.192 2.355 -37: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/2 (74 ms) -37: [----------] 3 tests from MdrunCanWrite/NptTrajectories (221 ms total) +37: Performance: 104.234 0.230 +37: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/2 (56 ms) +37: [----------] 3 tests from MdrunCanWrite/NptTrajectories (166 ms total) 37: 37: [----------] Global test environment tear-down -37: [==========] 29 tests from 11 test cases ran. (44633 ms total) +37: [==========] 29 tests from 11 test cases ran. (44730 ms total) 37: [ PASSED ] 29 tests. -37/40 Test #37: MdrunTests ....................... Passed 44.67 sec +37/40 Test #37: MdrunTests ....................... Passed 44.77 sec test 38 Start 38: MdrunNonIntegratorTests @@ -21249,7 +21281,7 @@ 38: Norm of force = 8.7721851e+01 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_0_minimize.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 (392 ms) +38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 (425 ms) 38: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_1_input.mdp, line 28]: @@ -21306,7 +21338,7 @@ 38: Norm of force = 1.8452602e+02 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_1_minimize.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 (342 ms) +38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 (391 ms) 38: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_2_input.mdp, line 28]: @@ -21361,7 +21393,7 @@ 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_2_minimize.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 turning H bonds into constraints... 38: This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 (228 ms) +38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 (203 ms) 38: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_3_input.mdp, line 28]: @@ -21423,7 +21455,7 @@ 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_3_minimize.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 turning H bonds into constraints... 38: This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 (237 ms) +38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 (177 ms) 38: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_4_input.mdp, line 28]: @@ -21488,7 +21520,7 @@ 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_4_minimize.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 3.000 Last energy frame read 2 time 3.000 turning all bonds into constraints... 38: This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 (149 ms) +38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 (72 ms) 38: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_5_input.mdp, line 28]: @@ -21560,8 +21592,8 @@ 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_5_minimize.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 turning all bonds into constraints... 38: This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 (99 ms) -38: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest (1447 ms total) +38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 (55 ms) +38: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest (1323 ms total) 38: 38: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest 38: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 @@ -21606,7 +21638,7 @@ 38: Norm of force = 1.6383933e+00 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_0_minimize.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 (61 ms) +38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 (63 ms) 38: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_1_input.mdp, line 28]: @@ -21652,7 +21684,7 @@ 38: Norm of force = 1.0525324e+00 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_1_minimize.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Last energy frame read 1 time 0.000 This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 (66 ms) +38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 (64 ms) 38: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_2_input.mdp, line 28]: @@ -21708,7 +21740,7 @@ 38: Norm of force = 1.0525324e+00 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_2_minimize.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Last energy frame read 1 time 0.000 This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 (56 ms) +38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 (48 ms) 38: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_3_input.mdp, line 28]: @@ -21762,7 +21794,7 @@ 38: Norm of force = 4.6227534e+03 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_3_minimize.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 (169 ms) +38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 (225 ms) 38: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_4_input.mdp, line 28]: @@ -21819,7 +21851,7 @@ 38: Norm of force = 3.6139019e+03 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_4_minimize.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 (182 ms) +38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 (170 ms) 38: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_5_input.mdp, line 28]: @@ -21886,8 +21918,8 @@ 38: Norm of force = 1.0198873e+04 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_5_minimize.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 (163 ms) -38: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest (697 ms total) +38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 (171 ms) +38: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest (742 ms total) 38: 38: [----------] 12 tests from NormalMdrunIsReproduced/MdrunRerunTest 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/0 @@ -21939,13 +21971,10 @@ 38: 38: Writing final coordinates. 38: -38: NOTE: 10 % of the run time was spent in pair search, -38: you might want to increase nstlist (this has no effect on accuracy) -38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.002 191.6 +38: Time: 0.004 0.002 192.2 38: (ns/day) (hour/ns) -38: Performance: 841.611 0.029 +38: Performance: 733.928 0.033 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_0.tpr, VERSION 2019.1 (single precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -21961,18 +21990,18 @@ 38: trr version: GMX_trn_file (single precision) 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 21 % of the run time was spent in pair search, +38: NOTE: 22 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.002 0.001 193.6 +38: Time: 0.002 0.001 193.8 38: (ns/day) (hour/ns) -38: Performance: 1457.784 0.016 +38: Performance: 1254.959 0.019 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_0_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_0_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/0 (90 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/0 (109 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/1 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_1_input.mdp, line 28]: @@ -22022,10 +22051,13 @@ 38: 38: Writing final coordinates. 38: +38: NOTE: 11 % of the run time was spent in pair search, +38: you might want to increase nstlist (this has no effect on accuracy) +38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.004 0.002 192.0 +38: Time: 0.004 0.002 192.3 38: (ns/day) (hour/ns) -38: Performance: 778.147 0.031 +38: Performance: 727.601 0.033 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_1.tpr, VERSION 2019.1 (single precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -22044,14 +22076,14 @@ 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.002 0.001 193.1 +38: Time: 0.002 0.001 194.2 38: (ns/day) (hour/ns) -38: Performance: 1385.649 0.017 +38: Performance: 1292.071 0.019 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_1_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_1_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/1 (79 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/1 (94 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/2 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_2_input.mdp, line 28]: @@ -22098,9 +22130,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.004 0.002 192.0 +38: Time: 0.004 0.002 191.9 38: (ns/day) (hour/ns) -38: Performance: 735.681 0.033 +38: Performance: 707.301 0.034 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_2.tpr, VERSION 2019.1 (single precision) 38: Changing nstlist from 8 to 100, rlist from 0.708 to 0.73 38: @@ -22120,14 +22152,14 @@ 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.002 0.001 193.8 +38: Time: 0.002 0.001 194.4 38: (ns/day) (hour/ns) -38: Performance: 1453.656 0.017 +38: Performance: 1242.306 0.019 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_2_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_2_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/2 (90 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/2 (108 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/3 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_3_input.mdp, line 28]: @@ -22176,7 +22208,7 @@ 38: Core t (s) Wall t (s) (%) 38: Time: 0.005 0.002 193.1 38: (ns/day) (hour/ns) -38: Performance: 597.710 0.040 +38: Performance: 604.929 0.040 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_3.tpr, VERSION 2019.1 (single precision) 38: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 38: @@ -22192,18 +22224,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 22 % of the run time was spent in pair search, +38: NOTE: 19 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.002 0.001 193.1 +38: Time: 0.002 0.001 193.8 38: (ns/day) (hour/ns) -38: Performance: 1497.835 0.016 +38: Performance: 1325.714 0.018 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_3_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_3_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/3 (121 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/3 (101 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/4 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_4_input.mdp, line 28]: @@ -22262,9 +22294,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.004 0.002 191.9 +38: Time: 0.004 0.002 192.4 38: (ns/day) (hour/ns) -38: Performance: 761.507 0.032 +38: Performance: 698.797 0.034 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_4.tpr, VERSION 2019.1 (single precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -22283,14 +22315,14 @@ 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.002 0.001 194.3 +38: Time: 0.002 0.001 193.7 38: (ns/day) (hour/ns) -38: Performance: 1335.196 0.018 +38: Performance: 1247.842 0.019 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_4_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_4_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/4 (403 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/4 (454 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/5 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_5_input.mdp, line 28]: @@ -22349,9 +22381,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.004 0.002 192.9 +38: Time: 0.004 0.002 192.5 38: (ns/day) (hour/ns) -38: Performance: 648.279 0.037 +38: Performance: 635.178 0.038 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_5.tpr, VERSION 2019.1 (single precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -22370,14 +22402,14 @@ 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.002 0.001 193.7 +38: Time: 0.002 0.001 193.8 38: (ns/day) (hour/ns) -38: Performance: 1360.555 0.018 +38: Performance: 1234.093 0.019 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_5_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_5_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/5 (386 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/5 (430 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/6 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_6_input.mdp, line 28]: @@ -22432,9 +22464,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.004 0.002 191.7 +38: Time: 0.004 0.002 192.0 38: (ns/day) (hour/ns) -38: Performance: 764.247 0.031 +38: Performance: 694.386 0.035 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_6.tpr, VERSION 2019.1 (single precision) 38: Changing nstlist from 8 to 100, rlist from 0.733 to 0.824 38: @@ -22450,18 +22482,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 21 % of the run time was spent in pair search, +38: NOTE: 15 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.002 0.001 194.1 +38: Time: 0.003 0.002 195.5 38: (ns/day) (hour/ns) -38: Performance: 1357.258 0.018 +38: Performance: 926.823 0.026 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_6_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_6_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/6 (388 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/6 (467 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/7 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_7_input.mdp, line 28]: @@ -22516,9 +22548,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.004 0.002 192.8 +38: Time: 0.004 0.002 192.6 38: (ns/day) (hour/ns) -38: Performance: 646.646 0.037 +38: Performance: 671.674 0.036 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_7.tpr, VERSION 2019.1 (single precision) 38: Changing nstlist from 8 to 25, rlist from 0.759 to 0.912 38: @@ -22534,18 +22566,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 21 % of the run time was spent in pair search, +38: NOTE: 18 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.002 0.001 194.0 +38: Time: 0.002 0.001 193.3 38: (ns/day) (hour/ns) -38: Performance: 1300.252 0.018 +38: Performance: 1351.897 0.018 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_7_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_7_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/7 (390 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/7 (380 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/8 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_8_input.mdp, line 28]: @@ -22621,9 +22653,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.007 0.004 195.0 +38: Time: 0.008 0.004 194.9 38: (ns/day) (hour/ns) -38: Performance: 396.358 0.061 +38: Performance: 356.475 0.067 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_8.tpr, VERSION 2019.1 (single precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -22638,18 +22670,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 17 % of the run time was spent in pair search, +38: NOTE: 18 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.002 196.0 +38: Time: 0.003 0.002 195.6 38: (ns/day) (hour/ns) -38: Performance: 853.859 0.028 +38: Performance: 841.037 0.029 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_8_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_8_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/8 (116 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/8 (118 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/9 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_9_input.mdp, line 28]: @@ -22724,13 +22756,13 @@ 38: 38: Writing final coordinates. 38: -38: NOTE: 51 % of the run time was spent in pair search, +38: NOTE: 14 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.017 0.009 197.7 +38: Time: 0.010 0.005 196.0 38: (ns/day) (hour/ns) -38: Performance: 171.796 0.140 +38: Performance: 298.363 0.080 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_9.tpr, VERSION 2019.1 (single precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -22745,18 +22777,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 74 % of the run time was spent in pair search, +38: NOTE: 32 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.012 0.006 198.7 +38: Time: 0.005 0.002 196.3 38: (ns/day) (hour/ns) -38: Performance: 246.276 0.097 +38: Performance: 634.982 0.038 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_9_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_9_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/9 (142 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/9 (136 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/10 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_10_input.mdp, line 28]: @@ -22828,9 +22860,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.008 0.004 195.3 +38: Time: 0.009 0.005 195.2 38: (ns/day) (hour/ns) -38: Performance: 352.114 0.068 +38: Performance: 319.334 0.075 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_10.tpr, VERSION 2019.1 (single precision) 38: Changing nstlist from 8 to 100, rlist from 0.744 to 0.868 38: @@ -22846,18 +22878,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 77 % of the run time was spent in pair search, +38: NOTE: 20 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.013 0.007 198.8 +38: Time: 0.004 0.002 196.1 38: (ns/day) (hour/ns) -38: Performance: 219.927 0.109 +38: Performance: 731.575 0.033 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_10_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_10_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/10 (160 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/10 (163 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/11 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_11_input.mdp, line 28]: @@ -22928,10 +22960,13 @@ 38: 38: Writing final coordinates. 38: +38: NOTE: 59 % of the run time was spent in pair search, +38: you might want to increase nstlist (this has no effect on accuracy) +38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.009 0.005 195.9 +38: Time: 0.020 0.010 197.9 38: (ns/day) (hour/ns) -38: Performance: 305.040 0.079 +38: Performance: 143.986 0.167 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_11.tpr, VERSION 2019.1 (single precision) 38: Changing nstlist from 8 to 40, rlist from 0.726 to 0.869 38: @@ -22947,19 +22982,19 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 33 % of the run time was spent in pair search, +38: NOTE: 80 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.004 0.002 196.4 +38: Time: 0.015 0.008 198.7 38: (ns/day) (hour/ns) -38: Performance: 699.035 0.034 +38: Performance: 191.961 0.125 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_11_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_11_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/11 (134 ms) -38: [----------] 12 tests from NormalMdrunIsReproduced/MdrunRerunTest (2500 ms total) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/11 (144 ms) +38: [----------] 12 tests from NormalMdrunIsReproduced/MdrunRerunTest (2706 ms total) 38: 38: [----------] 33 tests from MdrunIsReproduced/MdrunRerunFreeEnergyTest 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/0 @@ -23022,13 +23057,13 @@ 38: 38: Writing final coordinates. 38: -38: NOTE: 61 % of the run time was spent in pair search, +38: NOTE: 21 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.021 0.011 198.0 +38: Time: 0.012 0.006 196.0 38: (ns/day) (hour/ns) -38: Performance: 139.487 0.172 +38: Performance: 230.475 0.104 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_0.tpr, VERSION 2019.1 (single precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -23047,14 +23082,14 @@ 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.018 0.009 198.4 +38: Time: 0.019 0.010 198.4 38: (ns/day) (hour/ns) -38: Performance: 165.070 0.145 +38: Performance: 153.815 0.156 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_0_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_0_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/0 (139 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/0 (145 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/1 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_1_input.mdp, line 42]: @@ -23115,13 +23150,10 @@ 38: 38: Writing final coordinates. 38: -38: NOTE: 59 % of the run time was spent in pair search, -38: you might want to increase nstlist (this has no effect on accuracy) -38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.020 0.010 197.8 +38: Time: 0.026 0.013 198.2 38: (ns/day) (hour/ns) -38: Performance: 146.385 0.164 +38: Performance: 113.338 0.212 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_1.tpr, VERSION 2019.1 (single precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -23136,18 +23168,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 59 % of the run time was spent in pair search, +38: NOTE: 77 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.009 0.005 196.8 +38: Time: 0.018 0.009 198.1 38: (ns/day) (hour/ns) -38: Performance: 314.573 0.076 +38: Performance: 157.383 0.152 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_1_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_1_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/1 (122 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/1 (160 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/2 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_2_input.mdp, line 42]: @@ -23209,9 +23241,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.009 0.005 194.8 +38: Time: 0.018 0.009 197.2 38: (ns/day) (hour/ns) -38: Performance: 326.285 0.074 +38: Performance: 162.014 0.148 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_2.tpr, VERSION 2019.1 (single precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -23226,18 +23258,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 18 % of the run time was spent in pair search, +38: NOTE: 61 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.005 0.002 194.4 +38: Time: 0.010 0.005 197.0 38: (ns/day) (hour/ns) -38: Performance: 626.841 0.038 +38: Performance: 295.515 0.081 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_2_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_2_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/2 (141 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/2 (160 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/3 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_3_input.mdp, line 42]: @@ -23298,10 +23330,13 @@ 38: 38: Writing final coordinates. 38: +38: NOTE: 56 % of the run time was spent in pair search, +38: you might want to increase nstlist (this has no effect on accuracy) +38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.008 0.004 194.8 +38: Time: 0.020 0.010 197.6 38: (ns/day) (hour/ns) -38: Performance: 339.670 0.071 +38: Performance: 143.113 0.168 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_3.tpr, VERSION 2019.1 (single precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -23316,18 +23351,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 64 % of the run time was spent in pair search, +38: NOTE: 16 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.010 0.005 197.3 +38: Time: 0.004 0.002 194.0 38: (ns/day) (hour/ns) -38: Performance: 277.467 0.086 +38: Performance: 681.105 0.035 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_3_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_3_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/3 (101 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/3 (148 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/4 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_4_input.mdp, line 42]: @@ -23389,9 +23424,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.017 0.008 197.3 +38: Time: 0.008 0.004 194.7 38: (ns/day) (hour/ns) -38: Performance: 174.210 0.138 +38: Performance: 357.364 0.067 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_4.tpr, VERSION 2019.1 (single precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -23406,18 +23441,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 67 % of the run time was spent in pair search, +38: NOTE: 68 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.012 0.006 197.6 +38: Time: 0.011 0.006 197.6 38: (ns/day) (hour/ns) -38: Performance: 249.427 0.096 +38: Performance: 264.596 0.091 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_4_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_4_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/4 (136 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/4 (143 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/5 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_5_input.mdp, line 42]: @@ -23479,9 +23514,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.017 0.009 197.1 +38: Time: 0.008 0.004 194.3 38: (ns/day) (hour/ns) -38: Performance: 169.391 0.142 +38: Performance: 366.724 0.065 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_5.tpr, VERSION 2019.1 (single precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -23496,18 +23531,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 77 % of the run time was spent in pair search, +38: NOTE: 15 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.018 0.009 198.5 +38: Time: 0.004 0.002 194.3 38: (ns/day) (hour/ns) -38: Performance: 159.337 0.151 +38: Performance: 729.237 0.033 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_5_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_5_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/5 (139 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/5 (138 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/6 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_6_input.mdp, line 42]: @@ -23569,9 +23604,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.009 0.004 194.9 +38: Time: 0.014 0.007 196.5 38: (ns/day) (hour/ns) -38: Performance: 333.456 0.072 +38: Performance: 213.554 0.112 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_6.tpr, VERSION 2019.1 (single precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -23586,18 +23621,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 69 % of the run time was spent in pair search, +38: NOTE: 65 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.012 0.006 197.9 +38: Time: 0.012 0.006 197.5 38: (ns/day) (hour/ns) -38: Performance: 236.437 0.102 +38: Performance: 237.806 0.101 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_6_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_6_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/6 (113 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/6 (158 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/7 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_7_input.mdp, line 42]: @@ -23659,9 +23694,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.008 0.004 194.8 +38: Time: 0.007 0.004 194.5 38: (ns/day) (hour/ns) -38: Performance: 347.252 0.069 +38: Performance: 384.101 0.062 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_7.tpr, VERSION 2019.1 (single precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -23680,14 +23715,14 @@ 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.013 0.007 197.9 +38: Time: 0.013 0.007 197.7 38: (ns/day) (hour/ns) -38: Performance: 216.032 0.111 +38: Performance: 224.030 0.107 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_7_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_7_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/7 (140 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/7 (149 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/8 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_8_input.mdp, line 42]: @@ -23749,9 +23784,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.008 0.004 194.9 +38: Time: 0.013 0.007 196.7 38: (ns/day) (hour/ns) -38: Performance: 337.844 0.071 +38: Performance: 214.438 0.112 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_8.tpr, VERSION 2019.1 (single precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -23766,18 +23801,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 62 % of the run time was spent in pair search, +38: NOTE: 33 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.010 0.005 197.2 +38: Time: 0.072 0.036 199.5 38: (ns/day) (hour/ns) -38: Performance: 287.060 0.084 +38: Performance: 40.455 0.593 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_8_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_8_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/8 (132 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/8 (165 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/9 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_9_input.mdp, line 42]: @@ -23839,9 +23874,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.008 0.004 193.7 +38: Time: 0.008 0.004 194.1 38: (ns/day) (hour/ns) -38: Performance: 344.263 0.070 +38: Performance: 346.451 0.069 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_9.tpr, VERSION 2019.1 (single precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -23856,18 +23891,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 66 % of the run time was spent in pair search, +38: NOTE: 18 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.011 0.005 197.7 +38: Time: 0.005 0.002 194.9 38: (ns/day) (hour/ns) -38: Performance: 270.629 0.089 +38: Performance: 609.960 0.039 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_9_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_9_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/9 (108 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/9 (127 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/10 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_10_input.mdp, line 42]: @@ -23928,10 +23963,13 @@ 38: 38: Writing final coordinates. 38: +38: NOTE: 16 % of the run time was spent in pair search, +38: you might want to increase nstlist (this has no effect on accuracy) +38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.009 0.005 195.0 +38: Time: 0.086 0.043 199.3 38: (ns/day) (hour/ns) -38: Performance: 317.409 0.076 +38: Performance: 34.084 0.704 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_10.tpr, VERSION 2019.1 (single precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -23946,18 +23984,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 78 % of the run time was spent in pair search, +38: NOTE: 76 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.017 0.009 198.4 +38: Time: 0.019 0.009 198.6 38: (ns/day) (hour/ns) -38: Performance: 169.182 0.142 +38: Performance: 156.440 0.153 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_10_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_10_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/10 (136 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/10 (167 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/11 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_11_input.mdp, line 42]: @@ -24019,9 +24057,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.009 0.005 195.1 +38: Time: 0.021 0.011 197.6 38: (ns/day) (hour/ns) -38: Performance: 309.718 0.077 +38: Performance: 136.705 0.176 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_11.tpr, VERSION 2019.1 (single precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -24036,18 +24074,15 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 69 % of the run time was spent in pair search, -38: you might want to increase nstlist (this has no effect on accuracy) -38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.012 0.006 198.0 +38: Time: 0.027 0.014 198.8 38: (ns/day) (hour/ns) -38: Performance: 233.214 0.103 +38: Performance: 108.058 0.222 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_11_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_11_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/11 (128 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/11 (137 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/12 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_12_input.mdp, line 42]: @@ -24109,9 +24144,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.010 0.005 195.4 +38: Time: 0.013 0.007 196.4 38: (ns/day) (hour/ns) -38: Performance: 297.340 0.081 +38: Performance: 220.186 0.109 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_12.tpr, VERSION 2019.1 (single precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -24126,18 +24161,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 66 % of the run time was spent in pair search, +38: NOTE: 72 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.011 0.006 197.8 +38: Time: 0.014 0.007 198.1 38: (ns/day) (hour/ns) -38: Performance: 256.948 0.093 +38: Performance: 204.142 0.118 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_12_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_12_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/12 (132 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/12 (133 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/13 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_13_input.mdp, line 42]: @@ -24198,10 +24233,13 @@ 38: 38: Writing final coordinates. 38: +38: NOTE: 52 % of the run time was spent in pair search, +38: you might want to increase nstlist (this has no effect on accuracy) +38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.010 0.005 195.2 +38: Time: 0.019 0.010 197.4 38: (ns/day) (hour/ns) -38: Performance: 300.268 0.080 +38: Performance: 150.755 0.159 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_13.tpr, VERSION 2019.1 (single precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -24216,18 +24254,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 76 % of the run time was spent in pair search, +38: NOTE: 59 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.016 0.008 198.3 +38: Time: 0.010 0.005 197.0 38: (ns/day) (hour/ns) -38: Performance: 180.938 0.133 +38: Performance: 303.897 0.079 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_13_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_13_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/13 (108 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/13 (122 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/14 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_14_input.mdp, line 42]: @@ -24289,9 +24327,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.009 0.005 195.2 +38: Time: 0.334 0.167 199.8 38: (ns/day) (hour/ns) -38: Performance: 314.943 0.076 +38: Performance: 8.793 2.730 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_14.tpr, VERSION 2019.1 (single precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -24306,18 +24344,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 68 % of the run time was spent in pair search, +38: NOTE: 38 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.012 0.006 197.6 +38: Time: 0.066 0.033 199.5 38: (ns/day) (hour/ns) -38: Performance: 236.855 0.101 +38: Performance: 44.692 0.537 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_14_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_14_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/14 (136 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/14 (357 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/15 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_15_input.mdp, line 42]: @@ -24379,9 +24417,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.009 0.005 195.2 +38: Time: 0.331 0.166 199.8 38: (ns/day) (hour/ns) -38: Performance: 318.344 0.075 +38: Performance: 8.858 2.710 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_15.tpr, VERSION 2019.1 (single precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -24396,18 +24434,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 17 % of the run time was spent in pair search, +38: NOTE: 33 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.004 0.002 194.2 +38: Time: 0.074 0.037 199.6 38: (ns/day) (hour/ns) -38: Performance: 641.795 0.037 +38: Performance: 39.825 0.603 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_15_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_15_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/15 (110 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/15 (304 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/16 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_16_input.mdp, line 42]: @@ -24469,9 +24507,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.009 0.005 195.0 +38: Time: 0.032 0.016 198.1 38: (ns/day) (hour/ns) -38: Performance: 305.464 0.079 +38: Performance: 90.799 0.264 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_16.tpr, VERSION 2019.1 (single precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -24486,18 +24524,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 68 % of the run time was spent in pair search, +38: NOTE: 70 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.012 0.006 197.8 +38: Time: 0.013 0.006 197.9 38: (ns/day) (hour/ns) -38: Performance: 242.124 0.099 +38: Performance: 226.476 0.106 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_16_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_16_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/16 (126 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/16 (179 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/17 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_17_input.mdp, line 42]: @@ -24558,10 +24596,13 @@ 38: 38: Writing final coordinates. 38: +38: NOTE: 29 % of the run time was spent in pair search, +38: you might want to increase nstlist (this has no effect on accuracy) +38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.009 0.005 195.2 +38: Time: 0.012 0.006 196.3 38: (ns/day) (hour/ns) -38: Performance: 317.229 0.076 +38: Performance: 233.923 0.103 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_17.tpr, VERSION 2019.1 (single precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -24576,18 +24617,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 19 % of the run time was spent in pair search, +38: NOTE: 67 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.004 0.002 194.7 +38: Time: 0.013 0.006 197.4 38: (ns/day) (hour/ns) -38: Performance: 642.264 0.037 +38: Performance: 230.967 0.104 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_17_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_17_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/17 (106 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/17 (101 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/18 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_18_input.mdp, line 42]: @@ -24649,9 +24690,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.018 0.009 197.4 +38: Time: 0.074 0.037 199.3 38: (ns/day) (hour/ns) -38: Performance: 162.386 0.148 +38: Performance: 39.459 0.608 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_18.tpr, VERSION 2019.1 (single precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -24666,18 +24707,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 18 % of the run time was spent in pair search, +38: NOTE: 78 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.005 0.002 194.6 +38: Time: 0.018 0.009 198.2 38: (ns/day) (hour/ns) -38: Performance: 633.610 0.038 +38: Performance: 157.459 0.152 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_18_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_18_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/18 (124 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/18 (160 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/19 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_19_input.mdp, line 42]: @@ -24739,9 +24780,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.009 0.005 195.0 +38: Time: 0.018 0.009 197.4 38: (ns/day) (hour/ns) -38: Performance: 315.750 0.076 +38: Performance: 159.638 0.150 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_19.tpr, VERSION 2019.1 (single precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -24756,18 +24797,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 63 % of the run time was spent in pair search, +38: NOTE: 57 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.011 0.005 197.5 +38: Time: 0.009 0.005 197.0 38: (ns/day) (hour/ns) -38: Performance: 275.901 0.087 +38: Performance: 322.950 0.074 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_19_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_19_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/19 (130 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/19 (143 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/20 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_20_input.mdp, line 42]: @@ -24829,9 +24870,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.014 0.007 196.4 +38: Time: 0.009 0.005 195.0 38: (ns/day) (hour/ns) -38: Performance: 208.501 0.115 +38: Performance: 325.080 0.074 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_20.tpr, VERSION 2019.1 (single precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -24846,18 +24887,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 77 % of the run time was spent in pair search, +38: NOTE: 70 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.017 0.009 198.4 +38: Time: 0.013 0.006 197.9 38: (ns/day) (hour/ns) -38: Performance: 166.850 0.144 +38: Performance: 227.715 0.105 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_20_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_20_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/20 (140 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/20 (132 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/21 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_21_input.mdp, line 42]: @@ -24918,13 +24959,10 @@ 38: 38: Writing final coordinates. 38: -38: NOTE: 55 % of the run time was spent in pair search, -38: you might want to increase nstlist (this has no effect on accuracy) -38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.021 0.011 197.9 +38: Time: 0.009 0.005 195.1 38: (ns/day) (hour/ns) -38: Performance: 135.249 0.177 +38: Performance: 320.147 0.075 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_21.tpr, VERSION 2019.1 (single precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -24939,18 +24977,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 76 % of the run time was spent in pair search, +38: NOTE: 70 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.017 0.009 198.2 +38: Time: 0.012 0.006 197.7 38: (ns/day) (hour/ns) -38: Performance: 172.286 0.139 +38: Performance: 236.782 0.101 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_21_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_21_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/21 (156 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/21 (124 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/22 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_22_input.mdp, line 42]: @@ -25007,10 +25045,13 @@ 38: 38: Writing final coordinates. 38: +38: NOTE: 52 % of the run time was spent in pair search, +38: you might want to increase nstlist (this has no effect on accuracy) +38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.010 0.005 195.3 +38: Time: 0.019 0.010 197.6 38: (ns/day) (hour/ns) -38: Performance: 288.363 0.083 +38: Performance: 151.191 0.159 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_22.tpr, VERSION 2019.1 (single precision) 38: Changing nstlist from 8 to 25, rlist from 0.749 to 0.88 38: @@ -25026,18 +25067,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 70 % of the run time was spent in pair search, +38: NOTE: 76 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.014 0.007 197.9 +38: Time: 0.017 0.008 198.2 38: (ns/day) (hour/ns) -38: Performance: 212.610 0.113 +38: Performance: 173.562 0.138 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_22_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_22_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/22 (180 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/22 (153 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/23 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_23_input.mdp, line 42]: @@ -25095,9 +25136,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.010 0.005 195.3 +38: Time: 0.009 0.005 194.9 38: (ns/day) (hour/ns) -38: Performance: 293.571 0.082 +38: Performance: 316.936 0.076 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_23.tpr, VERSION 2019.1 (single precision) 38: Changing nstlist from 8 to 25, rlist from 0.749 to 0.88 38: @@ -25113,18 +25154,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 70 % of the run time was spent in pair search, +38: NOTE: 66 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.013 0.007 197.9 +38: Time: 0.012 0.006 197.6 38: (ns/day) (hour/ns) -38: Performance: 215.323 0.111 +38: Performance: 240.488 0.100 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_23_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_23_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/23 (144 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/23 (135 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/24 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_24_input.mdp, line 42]: @@ -25182,9 +25223,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.010 0.005 194.3 +38: Time: 0.010 0.005 195.1 38: (ns/day) (hour/ns) -38: Performance: 293.978 0.082 +38: Performance: 275.580 0.087 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_24.tpr, VERSION 2019.1 (single precision) 38: Changing nstlist from 8 to 25, rlist from 0.749 to 0.88 38: @@ -25200,18 +25241,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 12 % of the run time was spent in pair search, +38: NOTE: 24 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.014 0.007 198.0 +38: Time: 0.005 0.003 194.9 38: (ns/day) (hour/ns) -38: Performance: 210.864 0.114 +38: Performance: 587.451 0.041 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_24_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_24_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/24 (161 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/24 (185 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/25 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_25_input.mdp, line 42]: @@ -25269,9 +25310,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.010 0.005 195.5 +38: Time: 0.027 0.014 198.0 38: (ns/day) (hour/ns) -38: Performance: 293.950 0.082 +38: Performance: 106.465 0.225 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_25.tpr, VERSION 2019.1 (single precision) 38: Changing nstlist from 8 to 25, rlist from 0.749 to 0.88 38: @@ -25287,18 +25328,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 71 % of the run time was spent in pair search, +38: NOTE: 73 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.014 0.007 198.0 +38: Time: 0.015 0.008 198.0 38: (ns/day) (hour/ns) -38: Performance: 206.641 0.116 +38: Performance: 191.418 0.125 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_25_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_25_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/25 (167 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/25 (212 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/26 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_26_input.mdp, line 42]: @@ -25356,9 +25397,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.018 0.009 197.4 +38: Time: 0.010 0.005 195.0 38: (ns/day) (hour/ns) -38: Performance: 159.324 0.151 +38: Performance: 289.434 0.083 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_26.tpr, VERSION 2019.1 (single precision) 38: Changing nstlist from 8 to 25, rlist from 0.749 to 0.88 38: @@ -25374,18 +25415,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 77 % of the run time was spent in pair search, +38: NOTE: 76 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.018 0.009 198.3 +38: Time: 0.017 0.009 198.4 38: (ns/day) (hour/ns) -38: Performance: 165.893 0.145 +38: Performance: 166.624 0.144 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_26_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_26_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/26 (176 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/26 (172 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/27 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_27_input.mdp, line 42]: @@ -25443,9 +25484,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.010 0.005 195.2 +38: Time: 0.010 0.005 195.0 38: (ns/day) (hour/ns) -38: Performance: 286.980 0.084 +38: Performance: 287.167 0.084 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_27.tpr, VERSION 2019.1 (single precision) 38: Changing nstlist from 8 to 25, rlist from 0.749 to 0.88 38: @@ -25461,18 +25502,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 74 % of the run time was spent in pair search, +38: NOTE: 27 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.015 0.008 198.2 +38: Time: 0.005 0.003 195.1 38: (ns/day) (hour/ns) -38: Performance: 191.507 0.125 +38: Performance: 544.126 0.044 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_27_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_27_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/27 (176 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/27 (179 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/28 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_28_input.mdp, line 42]: @@ -25529,10 +25570,13 @@ 38: 38: Writing final coordinates. 38: +38: NOTE: 59 % of the run time was spent in pair search, +38: you might want to increase nstlist (this has no effect on accuracy) +38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.010 0.005 195.1 +38: Time: 0.022 0.011 197.9 38: (ns/day) (hour/ns) -38: Performance: 293.445 0.082 +38: Performance: 129.885 0.185 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_28.tpr, VERSION 2019.1 (single precision) 38: Changing nstlist from 8 to 25, rlist from 0.749 to 0.88 38: @@ -25548,18 +25592,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 69 % of the run time was spent in pair search, +38: NOTE: 76 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.014 0.007 197.9 +38: Time: 0.018 0.009 197.9 38: (ns/day) (hour/ns) -38: Performance: 202.791 0.118 +38: Performance: 163.867 0.146 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_28_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_28_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/28 (176 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/28 (197 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/29 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_29_input.mdp, line 42]: @@ -25617,9 +25661,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.010 0.005 195.2 +38: Time: 0.011 0.005 195.0 38: (ns/day) (hour/ns) -38: Performance: 296.282 0.081 +38: Performance: 272.569 0.088 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_29.tpr, VERSION 2019.1 (single precision) 38: Changing nstlist from 8 to 25, rlist from 0.749 to 0.88 38: @@ -25635,18 +25679,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 63 % of the run time was spent in pair search, +38: NOTE: 16 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.011 0.005 197.5 +38: Time: 0.004 0.002 194.2 38: (ns/day) (hour/ns) -38: Performance: 270.605 0.089 +38: Performance: 695.327 0.035 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_29_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_29_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/29 (156 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/29 (207 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/30 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_30_input.mdp, line 42]: @@ -25703,13 +25747,10 @@ 38: 38: Writing final coordinates. 38: -38: NOTE: 46 % of the run time was spent in pair search, -38: you might want to increase nstlist (this has no effect on accuracy) -38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.018 0.009 197.4 +38: Time: 0.009 0.004 194.8 38: (ns/day) (hour/ns) -38: Performance: 159.721 0.150 +38: Performance: 327.918 0.073 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_30.tpr, VERSION 2019.1 (single precision) 38: Changing nstlist from 8 to 25, rlist from 0.749 to 0.88 38: @@ -25725,18 +25766,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 72 % of the run time was spent in pair search, +38: NOTE: 22 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.014 0.007 197.7 +38: Time: 0.004 0.002 194.6 38: (ns/day) (hour/ns) -38: Performance: 205.957 0.117 +38: Performance: 672.040 0.036 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_30_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_30_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/30 (168 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/30 (184 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/31 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_31_input.mdp, line 42]: @@ -25794,9 +25835,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.010 0.005 195.3 +38: Time: 0.009 0.005 195.1 38: (ns/day) (hour/ns) -38: Performance: 291.584 0.082 +38: Performance: 313.293 0.077 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_31.tpr, VERSION 2019.1 (single precision) 38: Changing nstlist from 8 to 25, rlist from 0.749 to 0.88 38: @@ -25812,18 +25853,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 20 % of the run time was spent in pair search, +38: NOTE: 17 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.005 0.002 194.7 +38: Time: 0.005 0.002 194.8 38: (ns/day) (hour/ns) -38: Performance: 607.134 0.040 +38: Performance: 589.756 0.041 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_31_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_31_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/31 (153 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/31 (162 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/32 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_32_input.mdp, line 42]: @@ -25881,9 +25922,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.019 0.010 197.0 +38: Time: 0.010 0.005 194.4 38: (ns/day) (hour/ns) -38: Performance: 154.564 0.155 +38: Performance: 286.246 0.084 38: Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_32.tpr, VERSION 2019.1 (single precision) 38: Changing nstlist from 8 to 25, rlist from 0.749 to 0.88 38: @@ -25899,24 +25940,24 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 17 % of the run time was spent in pair search, +38: NOTE: 72 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.004 0.002 194.9 +38: Time: 0.015 0.007 197.9 38: (ns/day) (hour/ns) -38: Performance: 651.846 0.037 +38: Performance: 197.164 0.122 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_32_normal.edr as single precision energy file 38: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_32_rerun.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/32 (156 ms) -38: [----------] 33 tests from MdrunIsReproduced/MdrunRerunFreeEnergyTest (4616 ms total) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/32 (150 ms) +38: [----------] 33 tests from MdrunIsReproduced/MdrunRerunFreeEnergyTest (5489 ms total) 38: 38: [----------] Global test environment tear-down -38: [==========] 57 tests from 4 test cases ran. (9260 ms total) +38: [==========] 57 tests from 4 test cases ran. (10260 ms total) 38: [ PASSED ] 57 tests. -38/40 Test #38: MdrunNonIntegratorTests .......... Passed 9.32 sec +38/40 Test #38: MdrunNonIntegratorTests .......... Passed 10.34 sec test 39 Start 39: LegacyGroupSchemeMdrunTests @@ -25960,7 +26001,7 @@ 39: Largest charge group radii for Van der Waals: 0.100, 0.100 nm 39: Largest charge group radii for Coulomb: 0.100, 0.100 nm 39: This run will generate roughly 0 Mb of data -39: [ OK ] Simple/TpiTest.ReproducesOutput/0 (385 ms) +39: [ OK ] Simple/TpiTest.ReproducesOutput/0 (399 ms) 39: [ RUN ] Simple/TpiTest.ReproducesOutput/1 39: 39: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/Simple_TpiTest_ReproducesOutput_1_input.mdp]: @@ -25996,13 +26037,13 @@ 39: Largest charge group radii for Van der Waals: 0.100, 0.100 nm 39: Largest charge group radii for Coulomb: 0.100, 0.100 nm 39: This run will generate roughly 0 Mb of data -39: [ OK ] Simple/TpiTest.ReproducesOutput/1 (397 ms) -39: [----------] 2 tests from Simple/TpiTest (782 ms total) +39: [ OK ] Simple/TpiTest.ReproducesOutput/1 (400 ms) +39: [----------] 2 tests from Simple/TpiTest (799 ms total) 39: 39: [----------] Global test environment tear-down -39: [==========] 2 tests from 1 test case ran. (782 ms total) +39: [==========] 2 tests from 1 test case ran. (800 ms total) 39: [ PASSED ] 2 tests. -39/40 Test #39: LegacyGroupSchemeMdrunTests ...... Passed 0.80 sec +39/40 Test #39: LegacyGroupSchemeMdrunTests ...... Passed 0.82 sec test 40 Start 40: MdrunMpiTests @@ -26017,7 +26058,7 @@ 40: For a correct single-point energy evaluation with nsteps = 0, use 40: continuation = yes to avoid constraining the input coordinates. 40: -40: Setting the LD random seed to 1981966967 +40: Setting the LD random seed to -335520580 40: Generated 3 of the 3 non-bonded parameter combinations 40: Generating 1-4 interactions: fudge = 0.5 40: Generated 3 of the 3 1-4 parameter combinations @@ -26050,16 +26091,16 @@ 40: starting mdrun 'spc2' 40: 0 steps, 0.0 ps. 40: -40: NOTE: 93 % of the run time was spent in pair search, +40: NOTE: 94 % of the run time was spent in pair search, 40: you might want to increase nstlist (this has no effect on accuracy) 40: 40: Core t (s) Wall t (s) (%) -40: Time: 0.010 0.005 196.8 +40: Time: 0.015 0.007 197.5 40: (ns/day) (hour/ns) -40: Performance: 17.229 1.393 +40: Performance: 11.641 2.062 40: This run will generate roughly 0 Mb of data -40: [ OK ] DomainDecompositionSpecialCasesTest.AnEmptyDomainWorks (64 ms) -40: [----------] 1 test from DomainDecompositionSpecialCasesTest (64 ms total) +40: [ OK ] DomainDecompositionSpecialCasesTest.AnEmptyDomainWorks (95 ms) +40: [----------] 1 test from DomainDecompositionSpecialCasesTest (95 ms total) 40: 40: [----------] 4 tests from MimicTest 40: [ RUN ] MimicTest.OneQuantumMol @@ -26075,7 +26116,7 @@ 40: For a correct single-point energy evaluation with nsteps = 0, use 40: continuation = yes to avoid constraining the input coordinates. 40: -40: Setting the LD random seed to 1067584090 +40: Setting the LD random seed to 1471803262 40: Generated 10 of the 10 non-bonded parameter combinations 40: Generating 1-4 interactions: fudge = 0.5 40: Generated 10 of the 10 1-4 parameter combinations @@ -26111,12 +26152,12 @@ 40: Reading frame 0 time 0.000 Last frame 0 time 0.000 40: 40: Core t (s) Wall t (s) (%) -40: Time: 0.008 0.004 198.1 +40: Time: 0.011 0.006 198.6 40: (ns/day) (hour/ns) -40: Performance: 21.461 1.118 +40: Performance: 15.276 1.571 40: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_OneQuantumMol.edr as single precision energy file 40: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -40: [ OK ] MimicTest.OneQuantumMol (98 ms) +40: [ OK ] MimicTest.OneQuantumMol (57 ms) 40: [ RUN ] MimicTest.AllQuantumMol 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_AllQuantumMol_input.mdp, line 3]: @@ -26130,7 +26171,7 @@ 40: For a correct single-point energy evaluation with nsteps = 0, use 40: continuation = yes to avoid constraining the input coordinates. 40: -40: Setting the LD random seed to 793873733 +40: Setting the LD random seed to -53376007 40: Generated 10 of the 10 non-bonded parameter combinations 40: Generating 1-4 interactions: fudge = 0.5 40: Generated 10 of the 10 1-4 parameter combinations @@ -26169,12 +26210,12 @@ 40: you might want to increase nstlist (this has no effect on accuracy) 40: 40: Core t (s) Wall t (s) (%) -40: Time: 0.011 0.006 198.6 +40: Time: 0.012 0.006 198.6 40: (ns/day) (hour/ns) -40: Performance: 15.020 1.598 +40: Performance: 14.231 1.686 40: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_AllQuantumMol.edr as single precision energy file 40: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -40: [ OK ] MimicTest.AllQuantumMol (51 ms) +40: [ OK ] MimicTest.AllQuantumMol (91 ms) 40: [ RUN ] MimicTest.TwoQuantumMol 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_TwoQuantumMol_input.mdp, line 3]: @@ -26188,7 +26229,7 @@ 40: For a correct single-point energy evaluation with nsteps = 0, use 40: continuation = yes to avoid constraining the input coordinates. 40: -40: Setting the LD random seed to -1011356392 +40: Setting the LD random seed to 2008558116 40: Generated 10 of the 10 non-bonded parameter combinations 40: Generating 1-4 interactions: fudge = 0.5 40: Generated 10 of the 10 1-4 parameter combinations @@ -26223,16 +26264,16 @@ 40: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 40: Reading frame 0 time 0.000 Last frame 0 time 0.000 40: -40: NOTE: 93 % of the run time was spent in pair search, +40: NOTE: 31 % of the run time was spent in pair search, 40: you might want to increase nstlist (this has no effect on accuracy) 40: 40: Core t (s) Wall t (s) (%) -40: Time: 0.013 0.007 199.0 +40: Time: 0.001 0.001 191.5 40: (ns/day) (hour/ns) -40: Performance: 12.901 1.860 +40: Performance: 122.635 0.196 40: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_TwoQuantumMol.edr as single precision energy file 40: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -40: [ OK ] MimicTest.TwoQuantumMol (63 ms) +40: [ OK ] MimicTest.TwoQuantumMol (43 ms) 40: [ RUN ] MimicTest.BondCuts 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_BondCuts_input.mdp, line 3]: @@ -26246,7 +26287,7 @@ 40: For a correct single-point energy evaluation with nsteps = 0, use 40: continuation = yes to avoid constraining the input coordinates. 40: -40: Setting the LD random seed to -677535691 +40: Setting the LD random seed to 1225519273 40: Generated 2211 of the 2211 non-bonded parameter combinations 40: Generating 1-4 interactions: fudge = 0.5 40: Generated 2211 of the 2211 1-4 parameter combinations @@ -26281,21 +26322,21 @@ 40: Reading frames from gro file 'Alanine dipeptide in water', 23 atoms. 40: Reading frame 0 time 0.000 Last frame 0 time 0.000 40: -40: NOTE: 41 % of the run time was spent in pair search, +40: NOTE: 81 % of the run time was spent in pair search, 40: you might want to increase nstlist (this has no effect on accuracy) 40: 40: Core t (s) Wall t (s) (%) -40: Time: 0.002 0.001 194.1 +40: Time: 0.008 0.004 197.9 40: (ns/day) (hour/ns) -40: Performance: 81.619 0.294 +40: Performance: 21.725 1.105 40: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_BondCuts.edr as single precision energy file 40: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 300.368 K 40: Calculated rlist for 1x1 atom pair-list as 1.034 nm, buffer size 0.034 nm 40: Set rlist, assuming 4x4 atom pair-list, to 1.025 nm, buffer size 0.025 nm 40: Note that mdrun will redetermine rlist based on the actual pair-list setup 40: This run will generate roughly 0 Mb of data -40: [ OK ] MimicTest.BondCuts (49 ms) -40: [----------] 4 tests from MimicTest (261 ms total) +40: [ OK ] MimicTest.BondCuts (57 ms) +40: [----------] 4 tests from MimicTest (248 ms total) 40: 40: [----------] 1 test from MultiSimTerminationTest 40: [ RUN ] MultiSimTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts @@ -26311,7 +26352,7 @@ 40: scheme was introduced, but the group scheme was still the default. The 40: default is now the Verlet scheme, so you will observe different behaviour. 40: -40: Setting the LD random seed to 1594253346 +40: Setting the LD random seed to 893901576 40: Generated 279 of the 1225 non-bonded parameter combinations 40: Excluding 2 bonded neighbours molecule type 'Methanol' 40: Excluding 2 bonded neighbours molecule type 'SOL' @@ -26355,9 +26396,9 @@ 40: Writing final coordinates. 40: 40: Core t (s) Wall t (s) (%) -40: Time: 0.060 0.030 199.5 +40: Time: 0.052 0.026 199.2 40: (ns/day) (hour/ns) -40: Performance: 60.291 0.398 +40: Performance: 69.585 0.345 40: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeAuto.edr as single precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies.tpr, VERSION 2019.1 (single precision) 40: Can not increase nstlist because an NVE ensemble is used @@ -26375,9 +26416,9 @@ 40: Writing final coordinates. 40: 40: Core t (s) Wall t (s) (%) -40: Time: 0.060 0.030 199.5 +40: Time: 0.140 0.070 199.7 40: (ns/day) (hour/ns) -40: Performance: 60.801 0.395 +40: Performance: 25.819 0.930 40: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpu.edr as single precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Reading file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies.tpr, VERSION 2019.1 (single precision) 40: Can not increase nstlist because an NVE ensemble is used @@ -26395,11 +26436,11 @@ 40: Writing final coordinates. 40: 40: Core t (s) Wall t (s) (%) -40: Time: 0.055 0.028 199.4 +40: Time: 0.349 0.175 199.9 40: (ns/day) (hour/ns) -40: Performance: 65.361 0.367 +40: Performance: 10.392 2.309 40: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpuTune.edr as single precision energy file -40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (10140 ms) +40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (10326 ms) 40: [ RUN ] PmeTest.ScalesTheBox 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBox_input.mdp, line 12]: @@ -26413,7 +26454,7 @@ 40: For a correct single-point energy evaluation with nsteps = 0, use 40: continuation = yes to avoid constraining the input coordinates. 40: -40: Setting the LD random seed to -222061700 +40: Setting the LD random seed to -1847244086 40: Generated 279 of the 1225 non-bonded parameter combinations 40: Excluding 2 bonded neighbours molecule type 'Methanol' 40: Excluding 2 bonded neighbours molecule type 'SOL' @@ -26448,10 +26489,13 @@ 40: starting mdrun 'spc-and-methanol' 40: 0 steps, 0.0 ps. 40: +40: NOTE: 13 % of the run time was spent in pair search, +40: you might want to increase nstlist (this has no effect on accuracy) +40: 40: Core t (s) Wall t (s) (%) -40: Time: 0.009 0.004 194.3 +40: Time: 0.010 0.005 194.9 40: (ns/day) (hour/ns) -40: Performance: 19.212 1.249 +40: Performance: 16.083 1.492 40: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBox_spc-and-methanol_PmeOnCpu.edr as single precision energy file 40: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 966.268 K 40: Calculated rlist for 1x1 atom pair-list as 1.000 nm, buffer size 0.000 nm @@ -26460,8 +26504,8 @@ 40: Calculating fourier grid dimensions for X Y Z 40: Using a fourier grid of 28x28x128, spacing 0.108 0.108 0.118 40: This run will generate roughly 0 Mb of data -40: [ OK ] PmeTest.ScalesTheBox (31983 ms) -40: [----------] 2 tests from PmeTest (42123 ms total) +40: [ OK ] PmeTest.ScalesTheBox (31966 ms) +40: [----------] 2 tests from PmeTest (42292 ms total) 40: 40: [----------] 1 test from ReplicaExchangeTerminationTest 40: [ RUN ] ReplicaExchangeTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts @@ -26522,7 +26566,7 @@ 40: Norm of force = 8.7721851e+01 40: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_0_minimize.edr as single precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 (291 ms) +40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 (333 ms) 40: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_1_input.mdp, line 28]: @@ -26579,7 +26623,7 @@ 40: Norm of force = 1.8452602e+02 40: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_1_minimize.edr as single precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 (289 ms) +40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 (347 ms) 40: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_2_input.mdp, line 28]: @@ -26634,7 +26678,7 @@ 40: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_2_minimize.edr as single precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 turning H bonds into constraints... 40: This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 (130 ms) +40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 (155 ms) 40: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_3_input.mdp, line 28]: @@ -26696,7 +26740,7 @@ 40: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_3_minimize.edr as single precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 turning H bonds into constraints... 40: This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 (128 ms) +40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 (152 ms) 40: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_4_input.mdp, line 28]: @@ -26761,7 +26805,7 @@ 40: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_4_minimize.edr as single precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 3.000 Last energy frame read 2 time 3.000 turning all bonds into constraints... 40: This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 (19 ms) +40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 (22 ms) 40: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_5_input.mdp, line 28]: @@ -26833,8 +26877,8 @@ 40: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_5_minimize.edr as single precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 turning all bonds into constraints... 40: This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 (20 ms) -40: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest (877 ms total) +40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 (22 ms) +40: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest (1031 ms total) 40: 40: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest 40: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 @@ -26879,7 +26923,7 @@ 40: Norm of force = 1.6383933e+00 40: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_0_minimize.edr as single precision energy file 40: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 (8 ms) +40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 (10 ms) 40: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_1_input.mdp, line 28]: @@ -26925,7 +26969,7 @@ 40: Norm of force = 1.0525324e+00 40: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_1_minimize.edr as single precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Last energy frame read 1 time 0.000 This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 (14 ms) +40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 (10 ms) 40: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_2_input.mdp, line 28]: @@ -26981,7 +27025,7 @@ 40: Norm of force = 1.0525324e+00 40: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_2_minimize.edr as single precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Last energy frame read 1 time 0.000 This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 (26 ms) +40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 (11 ms) 40: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_3_input.mdp, line 28]: @@ -27035,7 +27079,7 @@ 40: Norm of force = 4.6227534e+03 40: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_3_minimize.edr as single precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 (176 ms) +40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 (144 ms) 40: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_4_input.mdp, line 28]: @@ -27092,7 +27136,7 @@ 40: Norm of force = 3.6139019e+03 40: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_4_minimize.edr as single precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 (180 ms) +40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 (131 ms) 40: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_5_input.mdp, line 28]: @@ -27159,27 +27203,27 @@ 40: Norm of force = 1.0198873e+04 40: Opened /build/gromacs-2019.1/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_5_minimize.edr as single precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 (164 ms) -40: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest (568 ms total) +40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 (137 ms) +40: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest (443 ms total) 40: 40: [----------] Global test environment tear-down -40: [==========] 21 tests from 7 test cases ran. (43893 ms total) +40: [==========] 21 tests from 7 test cases ran. (44111 ms total) 40: [ PASSED ] 21 tests. 40: 40: YOU HAVE 4 DISABLED TESTS 40: -40/40 Test #40: MdrunMpiTests .................... Passed 43.92 sec +40/40 Test #40: MdrunMpiTests .................... Passed 44.14 sec 100% tests passed, 0 tests failed out of 40 Label Time Summary: -GTest = 136.15 sec*proc (40 tests) -IntegrationTest = 98.79 sec*proc (5 tests) -MpiTest = 0.80 sec*proc (3 tests) -SlowTest = 31.25 sec*proc (1 test) -UnitTest = 6.11 sec*proc (34 tests) +GTest = 139.69 sec*proc (40 tests) +IntegrationTest = 100.14 sec*proc (5 tests) +MpiTest = 1.19 sec*proc (3 tests) +SlowTest = 32.97 sec*proc (1 test) +UnitTest = 6.58 sec*proc (34 tests) -Total Test time (real) = 136.23 sec +Total Test time (real) = 139.78 sec /usr/bin/make -j8 -C build/basic-dp tests make[1]: Entering directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/cmake -S/build/gromacs-2019.1 -B/build/gromacs-2019.1/build/basic-dp --check-build-system CMakeFiles/Makefile.cmake 0 @@ -27193,87 +27237,87 @@ /usr/bin/make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/external/googletest /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/external/googletest /build/gromacs-2019.1/build/basic-dp/src/external/googletest/CMakeFiles/gmock.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs /build/gromacs-2019.1/build/basic-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs /build/gromacs-2019.1/build/basic-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend +Scanning dependencies of target gmock +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' +cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs /build/gromacs-2019.1/build/basic-dp/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/programs /build/gromacs-2019.1/build/basic-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +/usr/bin/make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/build +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs /build/gromacs-2019.1/build/basic-dp/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs /build/gromacs-2019.1/build/basic-dp/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build +cd /build/gromacs-2019.1/build/basic-dp/src/external/googletest && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googlemock -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/googletest/googletest -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o -c /build/gromacs-2019.1/src/external/googletest/googlemock/src/gmock-all.cc make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs /build/gromacs-2019.1/build/basic-dp/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= +make[4]: Nothing to be done for 'src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -make[4]: Nothing to be done for 'src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build'. +cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build -make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -make[4]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -Scanning dependencies of target onlinehelp-test-shared +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build -Scanning dependencies of target gmock -[ 0%] Built target lmfit_objlib make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/mock_helptopic.cpp +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -/usr/bin/make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/build make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build [ 0%] Built target mdrun_test_objlib make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp/src/external/googletest && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googlemock -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/googletest/googletest -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o -c /build/gromacs-2019.1/src/external/googletest/googlemock/src/gmock-all.cc -/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend -cd /build/gromacs-2019.1/build/basic-dp/src/external/googletest && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googlemock -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/googletest/googletest -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o -c /build/gromacs-2019.1/src/external/googletest/googletest/src/gtest-all.cc +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. +make[4]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +[ 0%] Built target lmfit_objlib +cd /build/gromacs-2019.1/build/basic-dp/src/external/googletest && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googlemock -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/googletest/googletest -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o -c /build/gromacs-2019.1/src/external/googletest/googletest/src/gtest-all.cc +/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= -[ 1%] Built target mdrun_objlib -/usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend -make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/analysisdata/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build -make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. +[ 3%] Built target libgromacs_external +Scanning dependencies of target onlinehelp-test-shared make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 2%] Built target tng_io_obj +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build +[ 4%] Built target tng_io_obj +/usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend +[ 5%] Built target mdrun_objlib make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 5%] Built target libgromacs_external +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/mock_helptopic.cpp +make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' +cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/analysisdata/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/DependInfo.cmake --color= Scanning dependencies of target analysisdata-test-shared make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build -Scanning dependencies of target mdrunutility-test-shared +make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o -c /build/gromacs-2019.1/src/gromacs/analysisdata/tests/datatest.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -c /build/gromacs-2019.1/src/gromacs/analysisdata/tests/mock_datamodule.cpp +Scanning dependencies of target mdrunutility-test-shared make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -c /build/gromacs-2019.1/src/gromacs/analysisdata/tests/mock_datamodule.cpp make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp [ 19%] Built target libgromacs_generated @@ -27287,8 +27331,8 @@ make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' [ 79%] Built target libgromacs make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' [ 79%] Built target mdrunutility-test-shared +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' [ 79%] Built target onlinehelp-test-shared make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' [ 79%] Built target analysisdata-test-shared @@ -27333,20 +27377,20 @@ [ 80%] Built target testutils /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/depend /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend +/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/testutils/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/testutils/tests /build/gromacs-2019.1/build/basic-dp/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend +cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/testutils/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/testutils/tests /build/gromacs-2019.1/build/basic-dp/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/testutils/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/testutils/tests /build/gromacs-2019.1/build/basic-dp/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdlib/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend +/usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/applied-forces/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/applied-forces/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/listed-forces/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/listed-forces/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend @@ -27355,48 +27399,48 @@ /usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/domdec/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/domdec/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= +Scanning dependencies of target testutils-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' +cd /build/gromacs-2019.1/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/interactivetest.cpp Scanning dependencies of target testutils-mpi-test -Scanning dependencies of target listed-forces-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -/usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/mpitest.cpp -make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/bonded.cpp.o -c /build/gromacs-2019.1/src/gromacs/listed-forces/tests/bonded.cpp -Scanning dependencies of target testutils-test +Scanning dependencies of target listed-forces-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build +/usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build +Scanning dependencies of target mdrun-mpi-test Scanning dependencies of target applied-forces-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +Scanning dependencies of target domdec-test Scanning dependencies of target mdlib-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -/usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -Scanning dependencies of target domdec-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/bonded.cpp.o -c /build/gromacs-2019.1/src/gromacs/listed-forces/tests/bonded.cpp /usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/interactivetest.cpp -Scanning dependencies of target mdrun-mpi-test -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/domain_decomposition.cpp +/usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/calc_verletbuf.cpp /usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/electricfield.cpp.o -c /build/gromacs-2019.1/src/gromacs/applied-forces/tests/electricfield.cpp make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/calc_verletbuf.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /build/gromacs-2019.1/src/gromacs/domdec/tests/hashedmap.cpp Scanning dependencies of target commandline-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build -make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /build/gromacs-2019.1/src/gromacs/domdec/tests/hashedmap.cpp /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/domain_decomposition.cpp -make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/minimize.cpp cd /build/gromacs-2019.1/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/minimize.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/basic-dp/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../lib/libtestutils.a ../../../lib/libgromacs_d.so.4.0.0 ../../../lib/libgmock.a -lpthread -fopenmp -lm @@ -27411,10 +27455,10 @@ /usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmebsplinetest.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/refdata_tests.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/listed-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed-forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/listed-forces-test.dir/bonded.cpp.o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed-forces-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/domdec/tests/localatomsetmanager.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/refdata_tests.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' [ 80%] Built target listed-forces-test /usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend @@ -27440,12 +27484,20 @@ make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/gputest.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/hostallocator.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/hostallocator.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/fft/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' [ 80%] Built target domdec-test +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/devicetransfers.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +[ 82%] Built target fft-test /usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/hardware/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/hardware/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= @@ -27454,14 +27506,18 @@ /usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /build/gromacs-2019.1/src/gromacs/hardware/tests/hardwaretopology.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/fft/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmegathertest.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/mimic.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/testasserts_tests.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmegathertest.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmesolvetest.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/shake.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/multisim.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/xvgtest_tests.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 82%] Built target fft-test +[ 82%] Built target hardware-test /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/math/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= @@ -27470,14 +27526,12 @@ /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/arrayrefwithpadding.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/testasserts_tests.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/shake.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/multisim.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../lib/libtestutils.a ../../../lib/libgromacs_d.so.4.0.0 ../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 82%] Built target hardware-test +[ 83%] Built target testutils-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= @@ -27486,15 +27540,21 @@ /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinity.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/xvgtest_tests.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/dofit.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/dofit.cpp cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/multisimtest.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../lib/libtestutils.a ../../../lib/libgromacs_d.so.4.0.0 ../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/pmetest.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmesplinespreadtest.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/simulationsignal.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmetestcommon.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/dofit.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/dofit.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/updategroups.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/replicaexchange.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/testhardwarecontexts.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlineparser.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 83%] Built target testutils-test +[ 83%] Built target mdrunutility-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= @@ -27503,15 +27563,14 @@ /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinity-mpi.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/pmetest.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmesolvetest.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/functions.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/functions.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/simulationsignal.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 83%] Built target mdrunutility-test +[ 84%] Built target gpu_utils-test +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/updategroupscog.cpp /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= @@ -27520,34 +27579,19 @@ /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpformat.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/replicaexchange.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/updategroups.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpmanager.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlineparser.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/devicetransfers.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/invertmatrix.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-mpi-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../../../bin/mdrun-mpi-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/updategroupscog.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 84%] Built target gpu_utils-test /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/options/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp Scanning dependencies of target options-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/abstractoptionstorage.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../../../bin/mdrun-mpi-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 84%] Built target mdrunutility-mpi-test +[ 84%] Built target mdrun-mpi-test /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/random/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= @@ -27556,26 +27600,35 @@ /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/exponentialdistribution.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpmanager.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 84%] Built target mdrun-mpi-test +[ 84%] Built target ewald-test /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/restraint/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/restraint/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp Scanning dependencies of target restraintpotential-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /build/gromacs-2019.1/src/gromacs/restraint/tests/manager.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmesplinespreadtest.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/paddedvector.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpwritercontext.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/invertmatrix.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/mdebin.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +[ 85%] Built target mdlib-test +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/pargs.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-mpi-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 84%] Built target restraintpotential-test +[ 85%] Built target restraintpotential-test /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/tables/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/tables/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= @@ -27584,18 +27637,9 @@ /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/tables/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /build/gromacs-2019.1/src/gromacs/tables/tests/splinetable.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/mdebin.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 85%] Built target mdlib-test -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/tables/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/gammadistribution.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/normaldistribution.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 85%] Built target onlinehelp-test +[ 85%] Built target mdrunutility-mpi-test /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/taskassignment/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/taskassignment/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= @@ -27604,19 +27648,14 @@ /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /build/gromacs-2019.1/src/gromacs/taskassignment/tests/usergpuids.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/pargs.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/seed.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/seed.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmetestcommon.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/tabulatednormaldistribution.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/threefry.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/filenameoption.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/commandline-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/testhardwarecontexts.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/paddedvector.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpwritercontext.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/vectypes.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 86%] Built target commandline-test +[ 85%] Built target onlinehelp-test /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/utility/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake --color= @@ -27625,10 +27664,10 @@ /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/physicalnodecommunicator-mpi.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/commandline-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 86%] Built target taskassignment-test +[ 86%] Built target commandline-test /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/utility/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= @@ -27638,12 +27677,10 @@ make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/alignedallocator.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformintdistribution.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/normaldistribution.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/filenameoption.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' [ 86%] Built target utility-mpi-test /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend @@ -27654,8 +27691,12 @@ /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/confio.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 86%] Built target ewald-test +[ 86%] Built target taskassignment-test /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/pulling/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/pulling/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= @@ -27664,9 +27705,19 @@ /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/pull.cpp.o -c /build/gromacs-2019.1/src/gromacs/pulling/tests/pull.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/filenameoptionmanager.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformrealdistribution.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/filemd5.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/seed.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/seed.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/readinp.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/filenameoptionmanager.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/tngio.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/tabulatednormaldistribution.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/arrayref.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +[ 86%] Built target pull-test /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/awh/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/awh/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= @@ -27675,10 +27726,11 @@ /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/bias.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/bias.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/biasstate.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 86%] Built target pull-test +[ 86%] Built target fileio-test /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/simd/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= @@ -27687,10 +27739,11 @@ /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/bootstrap_loadstore.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/filemd5.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/tables/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/base.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/base.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/vectypes.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/threefry.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' [ 86%] Built target table-test /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend @@ -27701,29 +27754,30 @@ /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/make_unique.cpp.o -c /build/gromacs-2019.1/src/gromacs/compat/tests/make_unique.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /build/gromacs-2019.1/src/gromacs/compat/tests/pointers.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/readinp.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/base.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/base.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/arrayref.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 88%] Built target random-test +[ 88%] Built target math-test /usr/bin/make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/gmxana/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxana/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/grid.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/grid.cpp Scanning dependencies of target gmxana-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/entropy.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxana/tests/entropy.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/option.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/option.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/compat-test.dir/make_unique.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /build/gromacs-2019.1/src/gromacs/compat/tests/pointers.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/optionsassigner.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxana/tests/gmx_traj.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/gmx_trjconv.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxana/tests/gmx_trjconv.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 88%] Built target compat-test +[ 89%] Built target awh-test /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/DependInfo.cmake --color= @@ -27732,17 +27786,11 @@ /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pdb2gmx-test.dir/pdb2gmx.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/tngio.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxana/tests/gmx_traj.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/optionsassigner.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/biasstate.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/compat-test.dir/make_unique.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 89%] Built target math-test +[ 89%] Built target compat-test /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/DependInfo.cmake --color= @@ -27751,22 +27799,16 @@ /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/genconf.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 89%] Built target fileio-test -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/repeatingsection.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/insert-molecules.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/insert-molecules.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/gmx_trjconv.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxana/tests/gmx_trjconv.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxana/tests/gmx_msd.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_floatingpoint.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/insert-molecules.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/insert-molecules.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformintdistribution.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/readir.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/grid.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/grid.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pdb2gmx-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/pdb2gmx-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxana-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gmxana-test.dir/entropy.cpp.o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o CMakeFiles/gmxana-test.dir/gmx_trjconv.cpp.o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxana-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 89%] Built target pdb2gmx-test +[ 90%] Built target gmxana-test /usr/bin/make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/correlationfunctions/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/correlationfunctions/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/DependInfo.cmake --color= @@ -27775,41 +27817,44 @@ /usr/bin/make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/autocorr.cpp.o -c /build/gromacs-2019.1/src/gromacs/correlationfunctions/tests/autocorr.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxana/tests/gmx_msd.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/solvate.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o -c /build/gromacs-2019.1/src/gromacs/correlationfunctions/tests/manyautocorrelation.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformrealdistribution.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pdb2gmx-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o -c /build/gromacs-2019.1/src/gromacs/correlationfunctions/tests/correlationdataset.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxpreprocess-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/insert-molecules.cpp.o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxpreprocess-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 90%] Built target awh-test +[ 90%] Built target gmxpreprocess-test /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/analysisdata/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/expfit.cpp.o -c /build/gromacs-2019.1/src/gromacs/correlationfunctions/tests/expfit.cpp Scanning dependencies of target analysisdata-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o -c /build/gromacs-2019.1/src/gromacs/analysisdata/tests/analysisdata.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/timeunitmanager.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o -c /build/gromacs-2019.1/src/gromacs/correlationfunctions/tests/manyautocorrelation.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_floatingpoint_util.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxpreprocess-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/insert-molecules.cpp.o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxpreprocess-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxana-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gmxana-test.dir/entropy.cpp.o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o CMakeFiles/gmxana-test.dir/gmx_trjconv.cpp.o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxana-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/pdb2gmx-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 90%] Built target gmxpreprocess-test +[ 90%] Built target pdb2gmx-test /usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/selection/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' Scanning dependencies of target selection-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /build/gromacs-2019.1/src/gromacs/selection/tests/indexutil.cpp -[ 91%] Built target gmxana-test +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_floatingpoint_util.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_vector_operations.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/correlations-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/correlations-test.dir/autocorr.cpp.o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o CMakeFiles/correlations-test.dir/expfit.cpp.o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/correlations-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +[ 90%] Built target correlations-test /usr/bin/make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/DependInfo.cmake --color= @@ -27818,16 +27863,15 @@ /usr/bin/make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/moduletest.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o -c /build/gromacs-2019.1/src/gromacs/correlationfunctions/tests/correlationdataset.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/expfit.cpp.o -c /build/gromacs-2019.1/src/gromacs/correlationfunctions/tests/expfit.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/treesupport.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/repeatingsection.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o -c /build/gromacs-2019.1/src/gromacs/analysisdata/tests/arraydata.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/clustsize.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/correlations-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/correlations-test.dir/autocorr.cpp.o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o CMakeFiles/correlations-test.dir/expfit.cpp.o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/correlations-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /build/gromacs-2019.1/src/gromacs/selection/tests/nbsearch.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 91%] Built target correlations-test +[ 91%] Built target random-test /usr/bin/make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/energyanalysis/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/energyanalysis/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/DependInfo.cmake --color= @@ -27836,25 +27880,14 @@ /usr/bin/make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o -c /build/gromacs-2019.1/src/gromacs/energyanalysis/tests/legacyenergy.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /build/gromacs-2019.1/src/gromacs/selection/tests/nbsearch.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/average.cpp.o -c /build/gromacs-2019.1/src/gromacs/analysisdata/tests/average.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/cmdlinerunner.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/angle.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_math.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/energyanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/energyanalysis-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/energyanalysis-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' [ 91%] Built target energyanalysis-test -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o -c /build/gromacs-2019.1/src/gromacs/analysisdata/tests/arraydata.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_vector_operations.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/distance.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/freevolume.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_math.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/average.cpp.o -c /build/gromacs-2019.1/src/gromacs/analysisdata/tests/average.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/pairdist.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 92%] Built target options-test /usr/bin/make -f src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/tools/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs/tools/tests /build/gromacs-2019.1/build/basic-dp/src/gromacs/tools/tests/CMakeFiles/tool-test.dir/DependInfo.cmake --color= @@ -27863,36 +27896,36 @@ /usr/bin/make -f src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/tools/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tool-test.dir/report-methods.cpp.o -c /build/gromacs-2019.1/src/gromacs/tools/tests/report-methods.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/rdf.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /build/gromacs-2019.1/src/gromacs/selection/tests/poscalc.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/timeunitmanager.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/histogram.cpp.o -c /build/gromacs-2019.1/src/gromacs/analysisdata/tests/histogram.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/sasa.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/tools/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/select.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o -c /build/gromacs-2019.1/src/gromacs/analysisdata/tests/lifetime.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /build/gromacs-2019.1/src/gromacs/selection/tests/poscalc.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/tools/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/tool-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/tool-test.dir/report-methods.cpp.o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/tool-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 92%] Built target tool-test +[ 91%] Built target tool-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/DependInfo.cmake --color= -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /build/gromacs-2019.1/src/gromacs/selection/tests/selectioncollection.cpp Scanning dependencies of target mdrun-non-integrator-test make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/minimize.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask32.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_memory.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o -c /build/gromacs-2019.1/src/gromacs/analysisdata/tests/lifetime.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/treesupport.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/angle.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /build/gromacs-2019.1/src/gromacs/selection/tests/selectioncollection.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_integer.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/distance.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/freevolume.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_memory.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/pairdist.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o CMakeFiles/analysisdata-test.dir/average.cpp.o CMakeFiles/analysisdata-test.dir/histogram.cpp.o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -o ../../../../bin/analysisdata-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask64.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/rdf.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 92%] Built target analysisdata-test +[ 91%] Built target analysisdata-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/DependInfo.cmake --color= @@ -27901,19 +27934,16 @@ /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/legacy-mdrun-test.dir/tpitest.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/tpitest.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/topologyinformation.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/sasa.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/select.cpp cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/rerun.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4_floatingpoint.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4_vector_operations.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/legacy-mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 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-ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/scalar.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat 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-funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/topologyinformation.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 92%] Built target legacy-mdrun-test +[ 92%] Built target options-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/DependInfo.cmake --color= @@ -27922,54 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CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/compressed_x_output.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/legacy-mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_integer.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/legacy-mdrun-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/legacy-mdrun-test.dir/tpitest.cpp.o CMakeFiles/legacy-mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../../../bin/legacy-mdrun-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +[ 92%] Built target legacy-mdrun-test +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/grompp.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/grompp.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask32.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4_floatingpoint.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/trajectory.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/scalar_util.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4_vector_operations.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o -c /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/unionfind.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/grompp.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/grompp.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/keyvaluetreeserializer.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/keyvaluetreetransform.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat 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-fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/scalar_math.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4_math.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd 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/build/gromacs-2019.1/src/gromacs/simd/tests/scalar_util.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/scalar_math.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' [ 94%] Built target mdrun-non-integrator-test cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/interactiveMD.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask64.cpp cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/pmetest.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/pmetest.cpp cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/swapcoords.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /build/gromacs-2019.1/src/gromacs/selection/tests/selectionoption.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/tabulated_bonded_interactions.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /build/gromacs-2019.1/src/gromacs/selection/tests/selectionoption.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /build/gromacs-2019.1/src/gromacs/selection/tests/toputils.cpp cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/termination.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/termination.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/trajectory_writing.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/trajectory_writing.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' [ 96%] Built target simd-test cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/mimic.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/tests/mimic.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/logger.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/logger.cpp cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryanalysis-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o ../../analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -o ../../../../bin/trajectoryanalysis-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /build/gromacs-2019.1/src/gromacs/selection/tests/toputils.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/mutex.cpp [ 98%] Built target trajectoryanalysis-test +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask128.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/keyvaluetreeserializer.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/keyvaluetreetransform.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/gmxregex.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/gmxregex.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/logger.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/logger.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/mutex.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/path.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/path.cpp +cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o CMakeFiles/mdrun-test.dir/grompp.cpp.o CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o CMakeFiles/mdrun-test.dir/pmetest.cpp.o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o CMakeFiles/mdrun-test.dir/termination.cpp.o CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o CMakeFiles/mdrun-test.dir/mimic.cpp.o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../../../bin/mdrun-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm +make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +[ 98%] Built target mdrun-test cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/physicalnodecommunicator.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/stringutil.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/textreader.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/textwriter.cpp cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/typetraits.cpp -cd /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o CMakeFiles/mdrun-test.dir/grompp.cpp.o CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o CMakeFiles/mdrun-test.dir/pmetest.cpp.o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o CMakeFiles/mdrun-test.dir/termination.cpp.o CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o CMakeFiles/mdrun-test.dir/mimic.cpp.o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../../../bin/mdrun-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/basic-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 98%] Built target mdrun-test cd /build/gromacs-2019.1/build/basic-dp/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test -Wl,-rpath,/build/gromacs-2019.1/build/basic-dp/lib ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' @@ -28013,26 +28057,26 @@ 1: [----------] Global test environment set-up. 1: [----------] 10 tests from InteractiveTestHelperTest 1: [ RUN ] InteractiveTestHelperTest.ChecksSimpleSession -1: [ OK ] InteractiveTestHelperTest.ChecksSimpleSession (0 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSimpleSession (1 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline -1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline (1 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline (0 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput -1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput (0 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput -1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput (1 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsIncorrectOutput -1: [ OK ] InteractiveTestHelperTest.DetectsIncorrectOutput (0 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsIncorrectOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingOutput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingFinalOutput -1: [ OK ] InteractiveTestHelperTest.DetectsMissingFinalOutput (1 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsMissingFinalOutput (5 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraOutput -1: [ OK ] InteractiveTestHelperTest.DetectsExtraOutput (0 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsExtraOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingInput -1: [ OK ] InteractiveTestHelperTest.DetectsMissingInput (1 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsMissingInput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraInput -1: [ OK ] InteractiveTestHelperTest.DetectsExtraInput (0 ms) -1: [----------] 10 tests from InteractiveTestHelperTest (5 ms total) +1: [ OK ] InteractiveTestHelperTest.DetectsExtraInput (1 ms) +1: [----------] 10 tests from InteractiveTestHelperTest (10 ms total) 1: 1: [----------] 34 tests from ReferenceDataTest 1: [ RUN ] ReferenceDataTest.HandlesSimpleData @@ -28056,9 +28100,9 @@ 1: [ RUN ] ReferenceDataTest.HandlesMissingData 1: [ OK ] ReferenceDataTest.HandlesMissingData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedData -1: [ OK ] ReferenceDataTest.HandlesUncheckedData (0 ms) +1: [ OK ] ReferenceDataTest.HandlesUncheckedData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInSequence -1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInSequence (1 ms) +1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInSequence (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInCompound 1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInCompound (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariants @@ -28070,19 +28114,19 @@ 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeMissingKey 1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeMissingKey (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectValue -1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectValue (1 ms) +1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectValue (9 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectType -1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectType (0 ms) +1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectType (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingReferenceDataFile 1: [ OK ] ReferenceDataTest.HandlesMissingReferenceDataFile (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSpecialCharactersInStrings -1: [ OK ] ReferenceDataTest.HandlesSpecialCharactersInStrings (1 ms) +1: [ OK ] ReferenceDataTest.HandlesSpecialCharactersInStrings (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace 1: [ OK ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmptyStrings -1: [ OK ] ReferenceDataTest.HandlesEmptyStrings (0 ms) +1: [ OK ] ReferenceDataTest.HandlesEmptyStrings (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock -1: [ OK ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock (1 ms) +1: [ OK ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceItemIndices 1: [ OK ] ReferenceDataTest.HandlesSequenceItemIndices (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData @@ -28090,20 +28134,20 @@ 1: [ RUN ] ReferenceDataTest.HandlesMultipleNullIds 1: [ OK ] ReferenceDataTest.HandlesMultipleNullIds (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds -1: [ OK ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds (0 ms) +1: [ OK ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesReadingValues 1: [ OK ] ReferenceDataTest.HandlesReadingValues (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges (1 ms) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges (0 ms) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges (1 ms) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (0 ms) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (0 ms) -1: [----------] 34 tests from ReferenceDataTest (11 ms total) +1: [----------] 34 tests from ReferenceDataTest (20 ms total) 1: 1: [----------] 7 tests from FloatingPointDifferenceTest 1: [ RUN ] FloatingPointDifferenceTest.HandlesEqualValues @@ -28120,7 +28164,7 @@ 1: [ OK ] FloatingPointDifferenceTest.HandlesUlpDifferenceAcrossZero (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesNaN 1: [ OK ] FloatingPointDifferenceTest.HandlesNaN (0 ms) -1: [----------] 7 tests from FloatingPointDifferenceTest (1 ms total) +1: [----------] 7 tests from FloatingPointDifferenceTest (0 ms total) 1: 1: [----------] 4 tests from FloatingPointToleranceTest 1: [ RUN ] FloatingPointToleranceTest.UlpTolerance @@ -28135,19 +28179,19 @@ 1: 1: [----------] 4 tests from XvgTests 1: [ RUN ] XvgTests.CreateFile -1: [ OK ] XvgTests.CreateFile (0 ms) +1: [ OK ] XvgTests.CreateFile (1 ms) 1: [ RUN ] XvgTests.CheckMissing -1: [ OK ] XvgTests.CheckMissing (1 ms) +1: [ OK ] XvgTests.CheckMissing (0 ms) 1: [ RUN ] XvgTests.CheckExtra -1: [ OK ] XvgTests.CheckExtra (0 ms) +1: [ OK ] XvgTests.CheckExtra (1 ms) 1: [ RUN ] XvgTests.ReadIncorrect 1: [ OK ] XvgTests.ReadIncorrect (1 ms) -1: [----------] 4 tests from XvgTests (2 ms total) +1: [----------] 4 tests from XvgTests (3 ms total) 1: 1: [----------] Global test environment tear-down -1: [==========] 59 tests from 5 test cases ran. (20 ms total) +1: [==========] 59 tests from 5 test cases ran. (33 ms total) 1: [ PASSED ] 59 tests. - 1/40 Test #1: TestUtilsUnitTests ............... Passed 0.05 sec + 1/40 Test #1: TestUtilsUnitTests ............... Passed 0.07 sec test 2 Start 2: TestUtilsMpiUnitTests @@ -28157,13 +28201,13 @@ 2: [----------] Global test environment set-up. 2: [----------] 1 test from MpiSelfTest 2: [ RUN ] MpiSelfTest.Runs -2: [ OK ] MpiSelfTest.Runs (9 ms) -2: [----------] 1 test from MpiSelfTest (9 ms total) +2: [ OK ] MpiSelfTest.Runs (1 ms) +2: [----------] 1 test from MpiSelfTest (1 ms total) 2: 2: [----------] Global test environment tear-down -2: [==========] 1 test from 1 test case ran. (9 ms total) +2: [==========] 1 test from 1 test case ran. (1 ms total) 2: [ PASSED ] 1 test. - 2/40 Test #2: TestUtilsMpiUnitTests ............ Passed 0.03 sec + 2/40 Test #2: TestUtilsMpiUnitTests ............ Passed 0.02 sec test 3 Start 3: MdlibUnitTest @@ -28173,16 +28217,16 @@ 3: [----------] Global test environment set-up. 3: [----------] 1 test from VerletBufferConstraintTest 3: [ RUN ] VerletBufferConstraintTest.EqualMasses -3: [ OK ] VerletBufferConstraintTest.EqualMasses (5 ms) -3: [----------] 1 test from VerletBufferConstraintTest (5 ms total) +3: [ OK ] VerletBufferConstraintTest.EqualMasses (0 ms) +3: [----------] 1 test from VerletBufferConstraintTest (0 ms total) 3: 3: [----------] 3 tests from PrintEbin 3: [ RUN ] PrintEbin.print_ebin_HandlesEmptyAverages 3: [ OK ] PrintEbin.print_ebin_HandlesEmptyAverages (0 ms) 3: [ RUN ] PrintEbin.pr_ebin_HandlesAverages -3: [ OK ] PrintEbin.pr_ebin_HandlesAverages (1 ms) +3: [ OK ] PrintEbin.pr_ebin_HandlesAverages (0 ms) 3: [ RUN ] PrintEbin.pr_ebin_HandlesEmptyAverages -3: [ OK ] PrintEbin.pr_ebin_HandlesEmptyAverages (0 ms) +3: [ OK ] PrintEbin.pr_ebin_HandlesEmptyAverages (1 ms) 3: [----------] 3 tests from PrintEbin (1 ms total) 3: 3: [----------] 4 tests from ShakeTest @@ -28237,7 +28281,7 @@ 3: [ OK ] UpdateGroups.waterFlexAngle (0 ms) 3: [ RUN ] UpdateGroups.twoMoltypes 3: [ OK ] UpdateGroups.twoMoltypes (0 ms) -3: [----------] 9 tests from UpdateGroups (1 ms total) +3: [----------] 9 tests from UpdateGroups (0 ms total) 3: 3: [----------] 1 test from UpdateGroupsCog 3: [ RUN ] UpdateGroupsCog.ComputesCogs @@ -28268,7 +28312,7 @@ 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/10 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/10 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/11 -3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/11 (1 ms) +3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/11 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/12 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/12 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/13 @@ -28284,7 +28328,7 @@ 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/18 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/18 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/19 -3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/19 (1 ms) +3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/19 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/20 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/20 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/21 @@ -28293,10 +28337,10 @@ 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/22 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/23 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/23 (0 ms) -3: [----------] 24 tests from WithParameters/SettleTest (2 ms total) +3: [----------] 24 tests from WithParameters/SettleTest (1 ms total) 3: 3: [----------] Global test environment tear-down -3: [==========] 50 tests from 8 test cases ran. (10 ms total) +3: [==========] 50 tests from 8 test cases ran. (5 ms total) 3: [ PASSED ] 50 tests. 3/40 Test #3: MdlibUnitTest .................... Passed 0.03 sec test 4 @@ -28308,9 +28352,9 @@ 4: [----------] Global test environment set-up. 4: [----------] 3 tests from ElectricFieldTest 4: [ RUN ] ElectricFieldTest.Static -4: [ OK ] ElectricFieldTest.Static (1 ms) +4: [ OK ] ElectricFieldTest.Static (0 ms) 4: [ RUN ] ElectricFieldTest.Oscillating -4: [ OK ] ElectricFieldTest.Oscillating (0 ms) +4: [ OK ] ElectricFieldTest.Oscillating (1 ms) 4: [ RUN ] ElectricFieldTest.Pulsed 4: [ OK ] ElectricFieldTest.Pulsed (0 ms) 4: [----------] 3 tests from ElectricFieldTest (1 ms total) @@ -28336,11 +28380,11 @@ 5: [ RUN ] BondedTest.DihedralAnglePbcNone 5: [ OK ] BondedTest.DihedralAnglePbcNone (0 ms) 5: [ RUN ] BondedTest.DihedralAnglePbcXy -5: [ OK ] BondedTest.DihedralAnglePbcXy (1 ms) +5: [ OK ] BondedTest.DihedralAnglePbcXy (0 ms) 5: [ RUN ] BondedTest.DihedralAnglePbcXyz 5: [ OK ] BondedTest.DihedralAnglePbcXyz (0 ms) 5: [ RUN ] BondedTest.IfuncBondsPbcNo -5: [ OK ] BondedTest.IfuncBondsPbcNo (0 ms) +5: [ OK ] BondedTest.IfuncBondsPbcNo (1 ms) 5: [ RUN ] BondedTest.IfuncBondsPbcXy 5: [ OK ] BondedTest.IfuncBondsPbcXy (0 ms) 5: [ RUN ] BondedTest.IfuncBondsPbcXyz @@ -28362,7 +28406,7 @@ 5: [----------] Global test environment tear-down 5: [==========] 15 tests from 1 test case ran. (1 ms total) 5: [ PASSED ] 15 tests. - 5/40 Test #5: ListedForcesTest ................. Passed 0.03 sec + 5/40 Test #5: ListedForcesTest ................. Passed 0.02 sec test 6 Start 6: CommandLineUnitTests @@ -28372,9 +28416,9 @@ 6: [----------] Global test environment set-up. 6: [----------] 3 tests from CommandLineHelpModuleTest 6: [ RUN ] CommandLineHelpModuleTest.PrintsGeneralHelp -6: [ OK ] CommandLineHelpModuleTest.PrintsGeneralHelp (1 ms) +6: [ OK ] CommandLineHelpModuleTest.PrintsGeneralHelp (2 ms) 6: [ RUN ] CommandLineHelpModuleTest.PrintsHelpOnTopic -6: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (1 ms) +6: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (0 ms) 6: [ RUN ] CommandLineHelpModuleTest.ExportsHelp 6: [ OK ] CommandLineHelpModuleTest.ExportsHelp (1 ms) 6: [----------] 3 tests from CommandLineHelpModuleTest (3 ms total) @@ -28383,22 +28427,22 @@ 6: [ RUN ] CommandLineHelpWriterTest.HandlesOptionTypes 6: [ OK ] CommandLineHelpWriterTest.HandlesOptionTypes (1 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables -6: [ OK ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables (5 ms) +6: [ OK ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesLongFileOptions 6: [ OK ] CommandLineHelpWriterTest.HandlesLongFileOptions (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesLongOptions -6: [ OK ] CommandLineHelpWriterTest.HandlesLongOptions (1 ms) +6: [ OK ] CommandLineHelpWriterTest.HandlesLongOptions (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesOptionGroups 6: [ OK ] CommandLineHelpWriterTest.HandlesOptionGroups (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesHelpText 6: [ OK ] CommandLineHelpWriterTest.HandlesHelpText (0 ms) -6: [----------] 6 tests from CommandLineHelpWriterTest (7 ms total) +6: [----------] 6 tests from CommandLineHelpWriterTest (3 ms total) 6: 6: [----------] 6 tests from CommandLineModuleManagerTest 6: [ RUN ] CommandLineModuleManagerTest.RunsModule 6: [ OK ] CommandLineModuleManagerTest.RunsModule (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelp -6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelp (1 ms) +6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelp (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH @@ -28406,12 +28450,12 @@ 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames -6: [ OK ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames (1 ms) -6: [----------] 6 tests from CommandLineModuleManagerTest (2 ms total) +6: [ OK ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames (0 ms) +6: [----------] 6 tests from CommandLineModuleManagerTest (1 ms total) 6: 6: [----------] 13 tests from CommandLineParserTest 6: [ RUN ] CommandLineParserTest.HandlesSingleValues -6: [ OK ] CommandLineParserTest.HandlesSingleValues (0 ms) +6: [ OK ] CommandLineParserTest.HandlesSingleValues (1 ms) 6: [ RUN ] CommandLineParserTest.HandlesBooleanWithoutArgument 6: [ OK ] CommandLineParserTest.HandlesBooleanWithoutArgument (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesBooleanAsNoWithoutArgument @@ -28423,7 +28467,7 @@ 6: [ RUN ] CommandLineParserTest.HandlesString 6: [ OK ] CommandLineParserTest.HandlesString (0 ms) 6: [ RUN ] CommandLineParserTest.RejectsStringWithMultipleValues -6: [ OK ] CommandLineParserTest.RejectsStringWithMultipleValues (1 ms) +6: [ OK ] CommandLineParserTest.RejectsStringWithMultipleValues (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesDoubleDashOptionPrefix 6: [ OK ] CommandLineParserTest.HandlesDoubleDashOptionPrefix (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesOptionsStartingWithNumbers @@ -28435,8 +28479,8 @@ 6: [ RUN ] CommandLineParserTest.CanAllowPositionalArguments 6: [ OK ] CommandLineParserTest.CanAllowPositionalArguments (0 ms) 6: [ RUN ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions -6: [ OK ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions (0 ms) -6: [----------] 13 tests from CommandLineParserTest (1 ms total) +6: [ OK ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions (1 ms) +6: [----------] 13 tests from CommandLineParserTest (2 ms total) 6: 6: [----------] 6 tests from CommandLineProgramContextTest 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithAbsolutePath @@ -28444,7 +28488,7 @@ 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithRelativePath 6: [ OK ] CommandLineProgramContextTest.FindsBinaryWithRelativePath (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromPath -6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromPath (0 ms) +6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromPath (1 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromCurrentDirectory 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromCurrentDirectory (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink @@ -28473,11 +28517,11 @@ 6: [ RUN ] ParseCommonArgsTest.ParsesEnumArgs 6: [ OK ] ParseCommonArgsTest.ParsesEnumArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesFileArgs -6: [ OK ] ParseCommonArgsTest.ParsesFileArgs (0 ms) +6: [ OK ] ParseCommonArgsTest.ParsesFileArgs (1 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesFileArgsWithDefaults 6: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaults (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName -6: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName (1 ms) +6: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension 6: [ OK ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension (0 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesNonExistentInputFiles @@ -28487,9 +28531,9 @@ 6: [ RUN ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified 6: [ OK ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified (0 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesCompressedFiles -6: [ OK ] ParseCommonArgsTest.HandlesCompressedFiles (0 ms) +6: [ OK ] ParseCommonArgsTest.HandlesCompressedFiles (1 ms) 6: [ RUN ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension -6: [ OK ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension (1 ms) +6: [ OK ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension (0 ms) 6: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFile 6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (1 ms) 6: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName @@ -28499,7 +28543,7 @@ 6: [----------] 21 tests from ParseCommonArgsTest (4 ms total) 6: 6: [----------] Global test environment tear-down -6: [==========] 55 tests from 6 test cases ran. (18 ms total) +6: [==========] 55 tests from 6 test cases ran. (14 ms total) 6: [ PASSED ] 55 tests. 6/40 Test #6: CommandLineUnitTests ............. Passed 0.04 sec test 7 @@ -28524,7 +28568,7 @@ 7: [ OK ] HashedMap.LinkedEntries (0 ms) 7: [ RUN ] HashedMap.ResizesTable 7: [ OK ] HashedMap.ResizesTable (0 ms) -7: [----------] 7 tests from HashedMap (1 ms total) +7: [----------] 7 tests from HashedMap (0 ms total) 7: 7: [----------] 2 tests from LocalAtomSetManager 7: [ RUN ] LocalAtomSetManager.CanAddEmptyLocalAtomSet @@ -28534,7 +28578,7 @@ 7: [----------] 2 tests from LocalAtomSetManager (0 ms total) 7: 7: [----------] Global test environment tear-down -7: [==========] 9 tests from 2 test cases ran. (1 ms total) +7: [==========] 9 tests from 2 test cases ran. (0 ms total) 7: [ PASSED ] 9 tests. 7/40 Test #7: DomDecTests ...................... Passed 0.02 sec test 8 @@ -28552,61 +28596,61 @@ 8: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 (0 ms) 8: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 -8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (3 ms) +8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (5 ms) 8: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 -8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 (1 ms) -8: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (5 ms total) +8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 (0 ms) +8: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (6 ms total) 8: 8: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (3 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (8 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (3 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (14 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (6 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (3 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (1 ms) -8: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (62 ms total) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (3 ms) +8: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (60 ms total) 8: 8: [----------] 144 tests from SaneInput/PmeGatherTest 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/0 @@ -28614,25 +28658,25 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/1 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/1 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/2 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/2 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/2 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/3 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/3 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/4 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/4 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/5 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/5 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/5 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/6 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/6 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/6 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/7 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/7 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/7 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/8 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/8 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/8 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/9 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/9 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/9 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/10 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/11 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/12 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/13 @@ -28642,23 +28686,23 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/15 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/15 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/16 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/16 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/16 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/17 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/17 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/17 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/18 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/18 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/18 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/19 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/20 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/20 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/20 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/21 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/21 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/21 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/22 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/23 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/24 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/25 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/25 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/26 @@ -28666,7 +28710,7 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/27 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/27 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/28 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/28 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/28 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/29 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/29 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/30 @@ -28680,23 +28724,23 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/34 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/34 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/35 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/35 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/35 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/36 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (5 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/37 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/37 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/37 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/38 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/38 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/38 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/39 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/40 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/40 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/40 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/41 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/41 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/41 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/42 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/42 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/43 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/43 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/43 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/44 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/44 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/45 @@ -28710,21 +28754,21 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/49 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/49 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/50 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/50 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/50 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/51 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/51 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/51 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/52 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/52 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/52 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/53 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/53 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/53 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/54 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/54 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/54 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/55 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/55 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/55 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/56 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/56 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/56 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/57 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/57 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/57 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/58 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/58 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/59 @@ -28740,19 +28784,19 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/64 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/64 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/65 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/66 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/66 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/66 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/67 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/68 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/69 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/70 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/70 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/70 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/71 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/72 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/72 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/73 @@ -28762,35 +28806,35 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/75 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/75 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/76 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/76 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/76 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/77 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/77 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/77 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/78 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/78 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/78 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/79 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/79 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/79 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/80 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/81 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/82 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/82 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/82 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/83 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/83 (7 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/83 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/84 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/85 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/85 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/86 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/86 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/86 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/87 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/87 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/87 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/88 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/88 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/88 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/89 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/90 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/91 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/91 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/92 @@ -28800,11 +28844,11 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/94 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/94 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/95 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/95 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/95 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/96 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/96 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/96 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/97 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/97 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/97 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/98 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/98 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/99 @@ -28814,43 +28858,43 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/101 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/102 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/103 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/104 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/105 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/105 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/105 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/106 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/106 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/106 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/107 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/107 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/107 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/108 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/109 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/109 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/109 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/110 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/110 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/111 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/111 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/112 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/112 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/112 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/113 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/113 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/114 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/114 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/114 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/115 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/115 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/116 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/116 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/117 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/117 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/117 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/118 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/118 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/118 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/119 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/119 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/119 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/120 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/120 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/120 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/121 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/121 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/122 @@ -28858,60 +28902,60 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/123 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/123 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/124 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/124 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/124 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/125 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/125 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/126 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/126 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/127 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/127 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/127 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/128 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/128 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/129 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/130 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/130 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/131 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/131 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/132 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/132 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/132 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/133 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/133 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/133 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/134 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/134 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/134 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/135 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/135 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/135 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/136 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/136 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/136 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/137 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/137 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/137 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/138 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/138 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/138 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/139 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/139 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/139 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/140 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/140 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/140 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/141 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/141 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/141 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/142 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/143 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (5 ms) -8: [----------] 144 tests from SaneInput/PmeGatherTest (81 ms total) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (0 ms) +8: [----------] 144 tests from SaneInput/PmeGatherTest (77 ms total) 8: 8: [----------] 16 tests from SaneInput/PmeSolveTest 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/0 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (3 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/1 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/2 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/2 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/3 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (2 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (3 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/4 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (3 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/5 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (1 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/6 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/7 @@ -28919,30 +28963,30 @@ 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/8 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/9 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (2 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (3 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/10 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (2 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/11 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (2 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (3 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/12 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/12 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/13 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/13 (1 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/13 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/14 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/15 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (2 ms) -8: [----------] 16 tests from SaneInput/PmeSolveTest (27 ms total) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (1 ms) +8: [----------] 16 tests from SaneInput/PmeSolveTest (29 ms total) 8: 8: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 -8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (1 ms) +8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (2 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 -8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 (1 ms) +8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 (2 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 @@ -28951,71 +28995,71 @@ 8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (1 ms) -8: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (9 ms total) +8: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (11 ms total) 8: 8: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (2 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (7 ms) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (2 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 (1 ms) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 (2 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 (2 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (2 ms) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (3 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (2 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (2 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (1 ms) -8: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (19 ms total) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (2 ms) +8: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (18 ms total) 8: 8: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 (2 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (2 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (3 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (2 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (3 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 (2 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (7 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (0 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (2 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (3 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (2 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (2 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (2 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (2 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (1 ms) -8: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (30 ms total) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (2 ms) +8: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (27 ms total) 8: 8: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (3 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 (1 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (1 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 @@ -29025,30 +29069,30 @@ 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (1 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (2 ms) -8: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (22 ms total) +8: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (26 ms total) 8: 8: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (2 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (1 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (2 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (3 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (6 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 (3 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 (2 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 (1 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 @@ -29058,8 +29102,8 @@ 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (3 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (3 ms) -8: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (31 ms total) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (4 ms) +8: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (30 ms total) 8: 8: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 @@ -29067,26 +29111,26 @@ 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (4 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (10 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (6 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (6 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (7 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (9 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (10 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (9 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (3 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (5 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (4 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (5 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (6 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (6 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (7 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (7 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (8 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (9 ms) -8: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (84 ms total) +8: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (86 ms total) 8: 8: [----------] Global test environment tear-down 8: [==========] 257 tests from 10 test cases ran. (399 ms total) @@ -29101,20 +29145,20 @@ 9: [----------] Global test environment set-up. 9: [----------] 2 tests from ManyFFTTest 9: [ RUN ] ManyFFTTest.Complex1DLength48Multi5Test -9: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (6 ms) +9: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (7 ms) 9: [ RUN ] ManyFFTTest.Real1DLength48Multi5Test -9: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (8 ms) -9: [----------] 2 tests from ManyFFTTest (16 ms total) +9: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (10 ms) +9: [----------] 2 tests from ManyFFTTest (18 ms total) 9: 9: [----------] 1 test from FFTTest 9: [ RUN ] FFTTest.Real2DLength18_15Test -9: [ OK ] FFTTest.Real2DLength18_15Test (2 ms) +9: [ OK ] FFTTest.Real2DLength18_15Test (3 ms) 9: [----------] 1 test from FFTTest (3 ms total) 9: 9: [----------] 1 test from FFFTest3D 9: [ RUN ] FFFTest3D.Real5_6_9 -9: [ OK ] FFFTest3D.Real5_6_9 (2 ms) -9: [----------] 1 test from FFFTest3D (3 ms total) +9: [ OK ] FFFTest3D.Real5_6_9 (5 ms) +9: [----------] 1 test from FFFTest3D (5 ms total) 9: 9: [----------] 10 tests from 7_8_25_36_60/FFTTest1D 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/0 @@ -29124,25 +29168,25 @@ 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/2 9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (1 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/3 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (1 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (2 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/4 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (2 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (1 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/0 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (0 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (1 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/1 9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (0 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/2 9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/2 (0 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/3 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (5 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (6 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/4 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (8 ms) -9: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (20 ms total) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (9 ms) +9: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (22 ms total) 9: 9: [----------] Global test environment tear-down -9: [==========] 14 tests from 4 test cases ran. (42 ms total) +9: [==========] 14 tests from 4 test cases ran. (49 ms total) 9: [ PASSED ] 14 tests. - 9/40 Test #9: FFTUnitTests ..................... Passed 0.06 sec + 9/40 Test #9: FFTUnitTests ..................... Passed 0.07 sec test 10 Start 10: GpuUtilsUnitTests @@ -29155,7 +29199,7 @@ 10: [ OK ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks (0 ms) 10: [ RUN ] HostAllocatorTest/0.StatefulAllocatorUsesMemory 10: [ OK ] HostAllocatorTest/0.StatefulAllocatorUsesMemory (0 ms) -10: [----------] 2 tests from HostAllocatorTest/0 (0 ms total) +10: [----------] 2 tests from HostAllocatorTest/0 (1 ms total) 10: 10: [----------] 2 tests from HostAllocatorTest/1, where TypeParam = double 10: [ RUN ] HostAllocatorTest/1.EmptyMemoryAlwaysWorks @@ -29287,12 +29331,12 @@ 10: [ RUN ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment 10: [ OK ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment -10: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (5 ms) +10: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (1 ms) 10: [ RUN ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment 10: [ OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/0.Move 10: [ OK ] AllocatorTest/0.Move (0 ms) -10: [----------] 4 tests from AllocatorTest/0 (5 ms total) +10: [----------] 4 tests from AllocatorTest/0 (1 ms total) 10: 10: [----------] 4 tests from AllocatorTest/1, where TypeParam = gmx::Allocator 10: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment @@ -29309,12 +29353,12 @@ 10: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment 10: [ OK ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment -10: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (1 ms) +10: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (6 ms) 10: [ RUN ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment 10: [ OK ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/2.Move 10: [ OK ] AllocatorTest/2.Move (0 ms) -10: [----------] 4 tests from AllocatorTest/2 (1 ms total) +10: [----------] 4 tests from AllocatorTest/2 (6 ms total) 10: 10: [----------] 4 tests from AllocatorTest/3, where TypeParam = gmx::Allocator 10: [ RUN ] AllocatorTest/3.AllocatorAlignAllocatesWithAlignment @@ -29328,7 +29372,7 @@ 10: [----------] 4 tests from AllocatorTest/3 (0 ms total) 10: 10: [----------] Global test environment tear-down -10: [==========] 60 tests from 19 test cases ran. (7 ms total) +10: [==========] 60 tests from 19 test cases ran. (8 ms total) 10: [ PASSED ] 60 tests. 10/40 Test #10: GpuUtilsUnitTests ................ Passed 0.03 sec test 11 @@ -29340,19 +29384,19 @@ 11: [----------] Global test environment set-up. 11: [----------] 4 tests from HardwareTopologyTest 11: [ RUN ] HardwareTopologyTest.Execute -11: [ OK ] HardwareTopologyTest.Execute (21 ms) +11: [ OK ] HardwareTopologyTest.Execute (29 ms) 11: [ RUN ] HardwareTopologyTest.HwlocExecute -11: [ OK ] HardwareTopologyTest.HwlocExecute (21 ms) +11: [ OK ] HardwareTopologyTest.HwlocExecute (20 ms) 11: [ RUN ] HardwareTopologyTest.ProcessorSelfconsistency -11: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (20 ms) +11: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (23 ms) 11: [ RUN ] HardwareTopologyTest.NumaCacheSelfconsistency -11: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (20 ms) -11: [----------] 4 tests from HardwareTopologyTest (82 ms total) +11: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (25 ms) +11: [----------] 4 tests from HardwareTopologyTest (97 ms total) 11: 11: [----------] Global test environment tear-down -11: [==========] 4 tests from 1 test case ran. (82 ms total) +11: [==========] 4 tests from 1 test case ran. (97 ms total) 11: [ PASSED ] 4 tests. -11/40 Test #11: HardwareUnitTests ................ Passed 0.10 sec +11/40 Test #11: HardwareUnitTests ................ Passed 0.12 sec test 12 Start 12: MathUnitTests @@ -29408,7 +29452,7 @@ 12: 12: [----------] 21 tests from FunctionTest 12: [ RUN ] FunctionTest.StaticLog2 -12: [ OK ] FunctionTest.StaticLog2 (0 ms) +12: [ OK ] FunctionTest.StaticLog2 (1 ms) 12: [ RUN ] FunctionTest.Log2I32Bit 12: [ OK ] FunctionTest.Log2I32Bit (0 ms) 12: [ RUN ] FunctionTest.Log2I64Bit @@ -29420,7 +29464,7 @@ 12: [ RUN ] FunctionTest.InvsqrtDouble 12: [ OK ] FunctionTest.InvsqrtDouble (0 ms) 12: [ RUN ] FunctionTest.InvsqrtInteger -12: [ OK ] FunctionTest.InvsqrtInteger (0 ms) +12: [ OK ] FunctionTest.InvsqrtInteger (1 ms) 12: [ RUN ] FunctionTest.InvcbrtFloat 12: [ OK ] FunctionTest.InvcbrtFloat (0 ms) 12: [ RUN ] FunctionTest.InvcbrtDouble @@ -29449,7 +29493,7 @@ 12: [ OK ] FunctionTest.ErfAndErfInvAreInversesFloat (0 ms) 12: [ RUN ] FunctionTest.ErfAndErfInvAreInversesDouble 12: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (1 ms) -12: [----------] 21 tests from FunctionTest (8 ms total) +12: [----------] 21 tests from FunctionTest (4 ms total) 12: 12: [----------] 2 tests from InvertMatrixTest 12: [ RUN ] InvertMatrixTest.IdentityIsImpotent @@ -29518,7 +29562,7 @@ 12: [ OK ] PaddedVectorTest/4.CanMoveAssign (0 ms) 12: [ RUN ] PaddedVectorTest/4.CanSwap 12: [ OK ] PaddedVectorTest/4.CanSwap (0 ms) -12: [----------] 4 tests from PaddedVectorTest/4 (0 ms total) +12: [----------] 4 tests from PaddedVectorTest/4 (1 ms total) 12: 12: [----------] 4 tests from PaddedVectorTest/5, where TypeParam = gmx::Allocator 12: [ RUN ] PaddedVectorTest/5.ConstructsResizesAndReserves @@ -29529,7 +29573,7 @@ 12: [ OK ] PaddedVectorTest/5.CanMoveAssign (0 ms) 12: [ RUN ] PaddedVectorTest/5.CanSwap 12: [ OK ] PaddedVectorTest/5.CanSwap (0 ms) -12: [----------] 4 tests from PaddedVectorTest/5 (1 ms total) +12: [----------] 4 tests from PaddedVectorTest/5 (0 ms total) 12: 12: [----------] 4 tests from PaddedVectorTest/6, where TypeParam = gmx::Allocator 12: [ RUN ] PaddedVectorTest/6.ConstructsResizesAndReserves @@ -29570,10 +29614,10 @@ 12: [ RUN ] PaddedVectorTest/9.CanCopyAssign 12: [ OK ] PaddedVectorTest/9.CanCopyAssign (0 ms) 12: [ RUN ] PaddedVectorTest/9.CanMoveAssign -12: [ OK ] PaddedVectorTest/9.CanMoveAssign (1 ms) +12: [ OK ] PaddedVectorTest/9.CanMoveAssign (0 ms) 12: [ RUN ] PaddedVectorTest/9.CanSwap 12: [ OK ] PaddedVectorTest/9.CanSwap (0 ms) -12: [----------] 4 tests from PaddedVectorTest/9 (1 ms total) +12: [----------] 4 tests from PaddedVectorTest/9 (0 ms total) 12: 12: [----------] 33 tests from RVecTest 12: [ RUN ] RVecTest.CanBeStoredInVector @@ -29645,7 +29689,7 @@ 12: [----------] 33 tests from RVecTest (0 ms total) 12: 12: [----------] Global test environment tear-down -12: [==========] 112 tests from 20 test cases ran. (10 ms total) +12: [==========] 112 tests from 20 test cases ran. (5 ms total) 12: [ PASSED ] 112 tests. 12/40 Test #12: MathUnitTests .................... Passed 0.03 sec test 13 @@ -29667,7 +29711,7 @@ 13: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads 13: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithUnknownHardware -13: [ OK ] ThreadAffinityTest.DoesNothingWithUnknownHardware (1 ms) +13: [ OK ] ThreadAffinityTest.DoesNothingWithUnknownHardware (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithTooManyThreads 13: [ OK ] ThreadAffinityTest.DoesNothingWithTooManyThreads (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeOffset @@ -29675,27 +29719,27 @@ 13: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeStride 13: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeStride (0 ms) 13: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithAuto -13: [ OK ] ThreadAffinityTest.PinsSingleThreadWithAuto (0 ms) +13: [ OK ] ThreadAffinityTest.PinsSingleThreadWithAuto (1 ms) 13: [ RUN ] ThreadAffinityTest.PinsSingleThreadWhenForced -13: [ OK ] ThreadAffinityTest.PinsSingleThreadWhenForced (1 ms) +13: [ OK ] ThreadAffinityTest.PinsSingleThreadWhenForced (0 ms) 13: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced 13: [ OK ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced (0 ms) 13: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread 13: NOTE: Affinity setting failed. -13: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread (0 ms) +13: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread (1 ms) 13: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithAuto -13: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (1 ms) +13: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (0 ms) 13: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced 13: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (1 ms) 13: [ RUN ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads 13: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (0 ms) 13: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing 13: NOTE: Affinity setting for 1/2 threads failed. -13: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (1 ms) -13: [----------] 17 tests from ThreadAffinityTest (5 ms total) +13: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (5 ms) +13: [----------] 17 tests from ThreadAffinityTest (10 ms total) 13: 13: [----------] Global test environment tear-down -13: [==========] 17 tests from 1 test case ran. (5 ms total) +13: [==========] 17 tests from 1 test case ran. (10 ms total) 13: [ PASSED ] 17 tests. 13/40 Test #13: MdrunUtilityUnitTests ............ Passed 0.03 sec test 14 @@ -29707,40 +29751,40 @@ 14: [----------] Global test environment set-up. 14: [----------] 6 tests from ThreadAffinityMultiRankTest 14: [ RUN ] ThreadAffinityMultiRankTest.PinsWholeNode -14: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (73 ms) +14: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (117 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride -14: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (72 ms) +14: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (83 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.PinsTwoNodes -14: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (43 ms) +14: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (23 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled -14: [ OK ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled (35 ms) +14: [ OK ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled (16 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto -14: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (64 ms) +14: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (28 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce -14: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (48 ms) -14: [----------] 6 tests from ThreadAffinityMultiRankTest (337 ms total) +14: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (24 ms) +14: [----------] 6 tests from ThreadAffinityMultiRankTest (291 ms total) 14: 14: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (40 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (25 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (44 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (23 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (48 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (39 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (47 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (39 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (52 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (2 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (59 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (1 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (44 ms) -14: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (336 ms total) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (1 ms) +14: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (130 ms total) 14: 14: [----------] Global test environment tear-down -14: [==========] 13 tests from 2 test cases ran. (674 ms total) +14: [==========] 13 tests from 2 test cases ran. (421 ms total) 14: [ PASSED ] 13 tests. -14/40 Test #14: MdrunUtilityMpiUnitTests ......... Passed 0.69 sec +14/40 Test #14: MdrunUtilityMpiUnitTests ......... Passed 0.44 sec test 15 Start 15: OnlineHelpUnitTests @@ -29750,11 +29794,11 @@ 15: [----------] Global test environment set-up. 15: [----------] 6 tests from TextTableFormatterTest 15: [ RUN ] TextTableFormatterTest.HandlesBasicCase -15: [ OK ] TextTableFormatterTest.HandlesBasicCase (1 ms) +15: [ OK ] TextTableFormatterTest.HandlesBasicCase (0 ms) 15: [ RUN ] TextTableFormatterTest.HandlesEmptyColumnTitles 15: [ OK ] TextTableFormatterTest.HandlesEmptyColumnTitles (0 ms) 15: [ RUN ] TextTableFormatterTest.HandlesIndentation -15: [ OK ] TextTableFormatterTest.HandlesIndentation (0 ms) +15: [ OK ] TextTableFormatterTest.HandlesIndentation (1 ms) 15: [ RUN ] TextTableFormatterTest.HandlesOverflowingLines 15: [ OK ] TextTableFormatterTest.HandlesOverflowingLines (0 ms) 15: [ RUN ] TextTableFormatterTest.HandlesLastColumnFolding @@ -29765,19 +29809,19 @@ 15: 15: [----------] 3 tests from HelpManagerTest 15: [ RUN ] HelpManagerTest.HandlesRootTopic -15: [ OK ] HelpManagerTest.HandlesRootTopic (1 ms) +15: [ OK ] HelpManagerTest.HandlesRootTopic (0 ms) 15: [ RUN ] HelpManagerTest.HandlesSubTopics 15: [ OK ] HelpManagerTest.HandlesSubTopics (0 ms) 15: [ RUN ] HelpManagerTest.HandlesInvalidTopics -15: [ OK ] HelpManagerTest.HandlesInvalidTopics (0 ms) +15: [ OK ] HelpManagerTest.HandlesInvalidTopics (1 ms) 15: [----------] 3 tests from HelpManagerTest (1 ms total) 15: 15: [----------] 2 tests from HelpTopicFormattingTest 15: [ RUN ] HelpTopicFormattingTest.FormatsSimpleTopic 15: [ OK ] HelpTopicFormattingTest.FormatsSimpleTopic (0 ms) 15: [ RUN ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics -15: [ OK ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics (1 ms) -15: [----------] 2 tests from HelpTopicFormattingTest (1 ms total) +15: [ OK ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics (0 ms) +15: [----------] 2 tests from HelpTopicFormattingTest (0 ms total) 15: 15: [----------] 11 tests from HelpWriterContextTest 15: [ RUN ] HelpWriterContextTest.FormatsParagraphs @@ -29789,7 +29833,7 @@ 15: [ RUN ] HelpWriterContextTest.FormatsLiteralText 15: [ OK ] HelpWriterContextTest.FormatsLiteralText (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsLiteralTextAtBeginning -15: [ OK ] HelpWriterContextTest.FormatsLiteralTextAtBeginning (0 ms) +15: [ OK ] HelpWriterContextTest.FormatsLiteralTextAtBeginning (1 ms) 15: [ RUN ] HelpWriterContextTest.FormatsLiteralTextWithIndentation 15: [ OK ] HelpWriterContextTest.FormatsLiteralTextWithIndentation (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsBulletList @@ -29805,7 +29849,7 @@ 15: [----------] 11 tests from HelpWriterContextTest (1 ms total) 15: 15: [----------] Global test environment tear-down -15: [==========] 22 tests from 4 test cases ran. (4 ms total) +15: [==========] 22 tests from 4 test cases ran. (3 ms total) 15: [ PASSED ] 22 tests. 15/40 Test #15: OnlineHelpUnitTests .............. Passed 0.02 sec test 16 @@ -29842,7 +29886,7 @@ 16: [ RUN ] FileNameOptionTest.HandlesOptionalCustomDefaultExtension 16: [ OK ] FileNameOptionTest.HandlesOptionalCustomDefaultExtension (0 ms) 16: [ RUN ] FileNameOptionTest.GivesErrorOnUnknownFileSuffix -16: [ OK ] FileNameOptionTest.GivesErrorOnUnknownFileSuffix (0 ms) +16: [ OK ] FileNameOptionTest.GivesErrorOnUnknownFileSuffix (1 ms) 16: [ RUN ] FileNameOptionTest.GivesErrorOnInvalidFileSuffix 16: [ OK ] FileNameOptionTest.GivesErrorOnInvalidFileSuffix (0 ms) 16: [----------] 8 tests from FileNameOptionTest (1 ms total) @@ -29865,7 +29909,7 @@ 16: [ RUN ] FileNameOptionManagerTest.AcceptsMissingDefaultInputFileIfSpecified 16: [ OK ] FileNameOptionManagerTest.AcceptsMissingDefaultInputFileIfSpecified (0 ms) 16: [ RUN ] FileNameOptionManagerTest.AcceptsMissingRequiredInputFileIfSpecified -16: [ OK ] FileNameOptionManagerTest.AcceptsMissingRequiredInputFileIfSpecified (1 ms) +16: [ OK ] FileNameOptionManagerTest.AcceptsMissingRequiredInputFileIfSpecified (0 ms) 16: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionBasedOnExistingFile 16: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionBasedOnExistingFile (0 ms) 16: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredDefaultNameBasedOnExistingFile @@ -29878,12 +29922,12 @@ 16: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalFromDefaultNameOptionBasedOnExistingFile (0 ms) 16: [ RUN ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking 16: [ OK ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking (0 ms) -16: [----------] 15 tests from FileNameOptionManagerTest (1 ms total) +16: [----------] 15 tests from FileNameOptionManagerTest (0 ms total) 16: 16: [----------] 1 test from OptionsTest 16: [ RUN ] OptionsTest.FailsOnNonsafeStorage 16: [ OK ] OptionsTest.FailsOnNonsafeStorage (0 ms) -16: [----------] 1 test from OptionsTest (0 ms total) +16: [----------] 1 test from OptionsTest (1 ms total) 16: 16: [----------] 9 tests from OptionsAssignerTest 16: [ RUN ] OptionsAssignerTest.HandlesMissingRequiredParameter @@ -29939,12 +29983,12 @@ 16: [ RUN ] OptionsAssignerIntegerTest.HandlesVectors 16: [ OK ] OptionsAssignerIntegerTest.HandlesVectors (0 ms) 16: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorFromSingleValue -16: [ OK ] OptionsAssignerIntegerTest.HandlesVectorFromSingleValue (0 ms) +16: [ OK ] OptionsAssignerIntegerTest.HandlesVectorFromSingleValue (1 ms) 16: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue 16: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue (0 ms) 16: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment 16: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment (0 ms) -16: [----------] 13 tests from OptionsAssignerIntegerTest (0 ms total) +16: [----------] 13 tests from OptionsAssignerIntegerTest (1 ms total) 16: 16: [----------] 5 tests from OptionsAssignerDoubleTest 16: [ RUN ] OptionsAssignerDoubleTest.StoresSingleValue @@ -29967,7 +30011,7 @@ 16: [ RUN ] OptionsAssignerStringTest.HandlesEnumValueFromNullTerminatedArray 16: [ OK ] OptionsAssignerStringTest.HandlesEnumValueFromNullTerminatedArray (0 ms) 16: [ RUN ] OptionsAssignerStringTest.HandlesIncorrectEnumValue -16: [ OK ] OptionsAssignerStringTest.HandlesIncorrectEnumValue (1 ms) +16: [ OK ] OptionsAssignerStringTest.HandlesIncorrectEnumValue (0 ms) 16: [ RUN ] OptionsAssignerStringTest.CompletesEnumValue 16: [ OK ] OptionsAssignerStringTest.CompletesEnumValue (0 ms) 16: [ RUN ] OptionsAssignerStringTest.HandlesEnumWithNoValue @@ -29978,7 +30022,7 @@ 16: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVariable (0 ms) 16: [ RUN ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVector 16: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVector (0 ms) -16: [----------] 9 tests from OptionsAssignerStringTest (1 ms total) +16: [----------] 9 tests from OptionsAssignerStringTest (0 ms total) 16: 16: [----------] 6 tests from OptionsAssignerEnumTest 16: [ RUN ] OptionsAssignerEnumTest.StoresSingleValue @@ -30028,14 +30072,14 @@ 16: [ OK ] TimeUnitBehaviorTest.ScalesUserInputWithMultipleSources (0 ms) 16: [ RUN ] TimeUnitBehaviorTest.TimeUnitOptionWorks 16: [ OK ] TimeUnitBehaviorTest.TimeUnitOptionWorks (0 ms) -16: [----------] 4 tests from TimeUnitBehaviorTest (0 ms total) +16: [----------] 4 tests from TimeUnitBehaviorTest (1 ms total) 16: 16: [----------] 2 tests from TreeValueSupportAssignTest 16: [ RUN ] TreeValueSupportAssignTest.AssignsFromTree 16: [ OK ] TreeValueSupportAssignTest.AssignsFromTree (0 ms) 16: [ RUN ] TreeValueSupportAssignTest.AssignsFromTreeWithArrays -16: [ OK ] TreeValueSupportAssignTest.AssignsFromTreeWithArrays (1 ms) -16: [----------] 2 tests from TreeValueSupportAssignTest (1 ms total) +16: [ OK ] TreeValueSupportAssignTest.AssignsFromTreeWithArrays (0 ms) +16: [----------] 2 tests from TreeValueSupportAssignTest (0 ms total) 16: 16: [----------] 1 test from TreeValueSupportAssignErrorTest 16: [ RUN ] TreeValueSupportAssignErrorTest.HandlesInvalidValue @@ -30063,7 +30107,7 @@ 16: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultObjectValues 16: [ OK ] TreeValueSupportAdjustTest.FillsDefaultObjectValues (0 ms) 16: [ RUN ] TreeValueSupportAdjustTest.NormalizesValues -16: [ OK ] TreeValueSupportAdjustTest.NormalizesValues (0 ms) +16: [ OK ] TreeValueSupportAdjustTest.NormalizesValues (1 ms) 16: [ RUN ] TreeValueSupportAdjustTest.MergesDefaultValues 16: [ OK ] TreeValueSupportAdjustTest.MergesDefaultValues (0 ms) 16: [ RUN ] TreeValueSupportAdjustTest.OrdersValues @@ -30076,21 +30120,21 @@ 16: [ RUN ] TreeValueSupportTest.SupportsIntegerOption 16: [ OK ] TreeValueSupportTest.SupportsIntegerOption (0 ms) 16: [ RUN ] TreeValueSupportTest.SupportsInt64Option -16: [ OK ] TreeValueSupportTest.SupportsInt64Option (1 ms) +16: [ OK ] TreeValueSupportTest.SupportsInt64Option (0 ms) 16: [ RUN ] TreeValueSupportTest.SupportsStringOption 16: [ OK ] TreeValueSupportTest.SupportsStringOption (0 ms) 16: [ RUN ] TreeValueSupportTest.SupportsFloatOption -16: [ OK ] TreeValueSupportTest.SupportsFloatOption (0 ms) +16: [ OK ] TreeValueSupportTest.SupportsFloatOption (1 ms) 16: [ RUN ] TreeValueSupportTest.SupportsDoubleOption 16: [ OK ] TreeValueSupportTest.SupportsDoubleOption (0 ms) 16: [ RUN ] TreeValueSupportTest.SupportsEnumIntOption 16: [ OK ] TreeValueSupportTest.SupportsEnumIntOption (0 ms) 16: [ RUN ] TreeValueSupportTest.SupportsEnumOption 16: [ OK ] TreeValueSupportTest.SupportsEnumOption (0 ms) -16: [----------] 8 tests from TreeValueSupportTest (2 ms total) +16: [----------] 8 tests from TreeValueSupportTest (1 ms total) 16: 16: [----------] Global test environment tear-down -16: [==========] 110 tests from 18 test cases ran. (9 ms total) +16: [==========] 110 tests from 18 test cases ran. (7 ms total) 16: [ PASSED ] 110 tests. 16/40 Test #16: OptionsUnitTests ................. Passed 0.03 sec test 17 @@ -30102,14 +30146,14 @@ 17: [----------] Global test environment set-up. 17: [----------] 4 tests from ExponentialDistributionTest 17: [ RUN ] ExponentialDistributionTest.Output -17: [ OK ] ExponentialDistributionTest.Output (0 ms) +17: [ OK ] ExponentialDistributionTest.Output (1 ms) 17: [ RUN ] ExponentialDistributionTest.Logical 17: [ OK ] ExponentialDistributionTest.Logical (0 ms) 17: [ RUN ] ExponentialDistributionTest.Reset 17: [ OK ] ExponentialDistributionTest.Reset (0 ms) 17: [ RUN ] ExponentialDistributionTest.AltParam 17: [ OK ] ExponentialDistributionTest.AltParam (0 ms) -17: [----------] 4 tests from ExponentialDistributionTest (0 ms total) +17: [----------] 4 tests from ExponentialDistributionTest (1 ms total) 17: 17: [----------] 4 tests from GammaDistributionTest 17: [ RUN ] GammaDistributionTest.Output @@ -30124,14 +30168,14 @@ 17: 17: [----------] 4 tests from NormalDistributionTest 17: [ RUN ] NormalDistributionTest.Output -17: [ OK ] NormalDistributionTest.Output (1 ms) +17: [ OK ] NormalDistributionTest.Output (0 ms) 17: [ RUN ] NormalDistributionTest.Logical 17: [ OK ] NormalDistributionTest.Logical (0 ms) 17: [ RUN ] NormalDistributionTest.Reset 17: [ OK ] NormalDistributionTest.Reset (0 ms) 17: [ RUN ] NormalDistributionTest.AltParam 17: [ OK ] NormalDistributionTest.AltParam (0 ms) -17: [----------] 4 tests from NormalDistributionTest (1 ms total) +17: [----------] 4 tests from NormalDistributionTest (0 ms total) 17: 17: [----------] 1 test from SeedTest 17: [ RUN ] SeedTest.makeRandomSeed @@ -30144,7 +30188,7 @@ 17: [ RUN ] TabulatedNormalDistributionTest.Output16 17: [ OK ] TabulatedNormalDistributionTest.Output16 (0 ms) 17: [ RUN ] TabulatedNormalDistributionTest.OutputDouble14 -17: [ OK ] TabulatedNormalDistributionTest.OutputDouble14 (0 ms) +17: [ OK ] TabulatedNormalDistributionTest.OutputDouble14 (1 ms) 17: [ RUN ] TabulatedNormalDistributionTest.Logical 17: [ OK ] TabulatedNormalDistributionTest.Logical (0 ms) 17: [ RUN ] TabulatedNormalDistributionTest.Reset @@ -30168,21 +30212,21 @@ 17: [ RUN ] ThreeFry2x64Test.Discard 17: [ OK ] ThreeFry2x64Test.Discard (0 ms) 17: [ RUN ] ThreeFry2x64Test.InvalidCounter -17: [ OK ] ThreeFry2x64Test.InvalidCounter (1 ms) +17: [ OK ] ThreeFry2x64Test.InvalidCounter (0 ms) 17: [ RUN ] ThreeFry2x64Test.ExhaustInternalCounter 17: [ OK ] ThreeFry2x64Test.ExhaustInternalCounter (0 ms) -17: [----------] 6 tests from ThreeFry2x64Test (1 ms total) +17: [----------] 6 tests from ThreeFry2x64Test (0 ms total) 17: 17: [----------] 4 tests from UniformIntDistributionTest 17: [ RUN ] UniformIntDistributionTest.Output -17: [ OK ] UniformIntDistributionTest.Output (0 ms) +17: [ OK ] UniformIntDistributionTest.Output (1 ms) 17: [ RUN ] UniformIntDistributionTest.Logical 17: [ OK ] UniformIntDistributionTest.Logical (0 ms) 17: [ RUN ] UniformIntDistributionTest.Reset 17: [ OK ] UniformIntDistributionTest.Reset (0 ms) 17: [ RUN ] UniformIntDistributionTest.AltParam 17: [ OK ] UniformIntDistributionTest.AltParam (0 ms) -17: [----------] 4 tests from UniformIntDistributionTest (0 ms total) +17: [----------] 4 tests from UniformIntDistributionTest (1 ms total) 17: 17: [----------] 5 tests from UniformRealDistributionTest 17: [ RUN ] UniformRealDistributionTest.GenerateCanonical @@ -30199,13 +30243,13 @@ 17: 17: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/0 -17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/0 (1 ms) +17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/0 (0 ms) 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/1 17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/1 (0 ms) 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/2 17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/2 (0 ms) 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 -17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 (0 ms) +17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 (1 ms) 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 (0 ms) 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 @@ -30221,7 +30265,7 @@ 17: [----------] Global test environment tear-down 17: [==========] 44 tests from 10 test cases ran. (6 ms total) 17: [ PASSED ] 44 tests. -17/40 Test #17: RandomUnitTests .................. Passed 0.04 sec +17/40 Test #17: RandomUnitTests .................. Passed 0.03 sec test 18 Start 18: RestraintTests @@ -30249,52 +30293,52 @@ 19: [ RUN ] SplineTableTest/0.HandlesIncorrectInput 19: [ OK ] SplineTableTest/0.HandlesIncorrectInput (3 ms) 19: [ RUN ] SplineTableTest/0.Sinc -19: [ OK ] SplineTableTest/0.Sinc (2 ms) +19: [ OK ] SplineTableTest/0.Sinc (1 ms) 19: [ RUN ] SplineTableTest/0.LJ12 -19: [ OK ] SplineTableTest/0.LJ12 (36 ms) +19: [ OK ] SplineTableTest/0.LJ12 (34 ms) 19: [ RUN ] SplineTableTest/0.PmeCorrection -19: [ OK ] SplineTableTest/0.PmeCorrection (3 ms) +19: [ OK ] SplineTableTest/0.PmeCorrection (2 ms) 19: [ RUN ] SplineTableTest/0.HandlesIncorrectNumericalInput 19: [ OK ] SplineTableTest/0.HandlesIncorrectNumericalInput (1 ms) 19: [ RUN ] SplineTableTest/0.NumericalInputPmeCorr 19: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (2 ms) 19: [ RUN ] SplineTableTest/0.TwoFunctions -19: [ OK ] SplineTableTest/0.TwoFunctions (67 ms) +19: [ OK ] SplineTableTest/0.TwoFunctions (68 ms) 19: [ RUN ] SplineTableTest/0.ThreeFunctions 19: [ OK ] SplineTableTest/0.ThreeFunctions (72 ms) 19: [ RUN ] SplineTableTest/0.Simd 19: [ OK ] SplineTableTest/0.Simd (17 ms) 19: [ RUN ] SplineTableTest/0.SimdTwoFunctions -19: [ OK ] SplineTableTest/0.SimdTwoFunctions (66 ms) -19: [----------] 10 tests from SplineTableTest/0 (269 ms total) +19: [ OK ] SplineTableTest/0.SimdTwoFunctions (63 ms) +19: [----------] 10 tests from SplineTableTest/0 (264 ms total) 19: 19: [----------] 10 tests from SplineTableTest/1, where TypeParam = gmx::CubicSplineTable 19: [ RUN ] SplineTableTest/1.HandlesIncorrectInput 19: [ OK ] SplineTableTest/1.HandlesIncorrectInput (3 ms) 19: [ RUN ] SplineTableTest/1.Sinc -19: [ OK ] SplineTableTest/1.Sinc (2 ms) +19: [ OK ] SplineTableTest/1.Sinc (3 ms) 19: [ RUN ] SplineTableTest/1.LJ12 -19: [ OK ] SplineTableTest/1.LJ12 (85 ms) +19: [ OK ] SplineTableTest/1.LJ12 (84 ms) 19: [ RUN ] SplineTableTest/1.PmeCorrection -19: [ OK ] SplineTableTest/1.PmeCorrection (3 ms) +19: [ OK ] SplineTableTest/1.PmeCorrection (2 ms) 19: [ RUN ] SplineTableTest/1.HandlesIncorrectNumericalInput -19: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (5 ms) +19: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (1 ms) 19: [ RUN ] SplineTableTest/1.NumericalInputPmeCorr 19: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (2 ms) 19: [ RUN ] SplineTableTest/1.TwoFunctions -19: [ OK ] SplineTableTest/1.TwoFunctions (171 ms) +19: [ OK ] SplineTableTest/1.TwoFunctions (168 ms) 19: [ RUN ] SplineTableTest/1.ThreeFunctions -19: [ OK ] SplineTableTest/1.ThreeFunctions (179 ms) +19: [ OK ] SplineTableTest/1.ThreeFunctions (175 ms) 19: [ RUN ] SplineTableTest/1.Simd -19: [ OK ] SplineTableTest/1.Simd (40 ms) +19: [ OK ] SplineTableTest/1.Simd (39 ms) 19: [ RUN ] SplineTableTest/1.SimdTwoFunctions -19: [ OK ] SplineTableTest/1.SimdTwoFunctions (162 ms) -19: [----------] 10 tests from SplineTableTest/1 (655 ms total) +19: [ OK ] SplineTableTest/1.SimdTwoFunctions (159 ms) +19: [----------] 10 tests from SplineTableTest/1 (636 ms total) 19: 19: [----------] Global test environment tear-down -19: [==========] 20 tests from 2 test cases ran. (924 ms total) +19: [==========] 20 tests from 2 test cases ran. (900 ms total) 19: [ PASSED ] 20 tests. -19/40 Test #19: TableUnitTests ................... Passed 0.95 sec +19/40 Test #19: TableUnitTests ................... Passed 0.92 sec test 20 Start 20: TaskAssignmentUnitTests @@ -30304,11 +30348,11 @@ 20: [----------] Global test environment set-up. 20: [----------] 3 tests from GpuIdStringHandlingTest 20: [ RUN ] GpuIdStringHandlingTest.ParsingAndReconstructionWork -20: [ OK ] GpuIdStringHandlingTest.ParsingAndReconstructionWork (1 ms) +20: [ OK ] GpuIdStringHandlingTest.ParsingAndReconstructionWork (0 ms) 20: [ RUN ] GpuIdStringHandlingTest.EmptyStringCanBeValid 20: [ OK ] GpuIdStringHandlingTest.EmptyStringCanBeValid (0 ms) 20: [ RUN ] GpuIdStringHandlingTest.InvalidInputsThrow -20: [ OK ] GpuIdStringHandlingTest.InvalidInputsThrow (0 ms) +20: [ OK ] GpuIdStringHandlingTest.InvalidInputsThrow (1 ms) 20: [----------] 3 tests from GpuIdStringHandlingTest (1 ms total) 20: 20: [----------] Global test environment tear-down @@ -30326,14 +30370,14 @@ 21: [ RUN ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment 21: [ OK ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment -21: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (0 ms) +21: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (1 ms) 21: [ RUN ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment 21: [ OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/0.Move 21: [ OK ] AllocatorTest/0.Move (0 ms) 21: [ RUN ] AllocatorTest/0.StatelessAllocatorUsesNoMemory 21: [ OK ] AllocatorTest/0.StatelessAllocatorUsesNoMemory (0 ms) -21: [----------] 5 tests from AllocatorTest/0 (0 ms total) +21: [----------] 5 tests from AllocatorTest/0 (1 ms total) 21: 21: [----------] 5 tests from AllocatorTest/1, where TypeParam = gmx::Allocator 21: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment @@ -30434,7 +30478,7 @@ 21: [ OK ] ArrayRefTest/0.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/0.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/0.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/0 (0 ms total) +21: [----------] 9 tests from ArrayRefTest/0 (1 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/1, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/1.MakeWithAssignmentWorks @@ -30476,7 +30520,7 @@ 21: [ OK ] ArrayRefTest/2.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/2.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/2.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/2 (1 ms total) +21: [----------] 9 tests from ArrayRefTest/2 (0 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/3, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/3.MakeWithAssignmentWorks @@ -30602,7 +30646,7 @@ 21: [ OK ] ArrayRefTest/8.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/8.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/8.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/8 (0 ms total) +21: [----------] 9 tests from ArrayRefTest/8 (1 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/9, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/9.MakeWithAssignmentWorks @@ -30665,7 +30709,7 @@ 21: [ OK ] ArrayRefTest/11.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/11.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/11.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/11 (1 ms total) +21: [----------] 9 tests from ArrayRefTest/11 (0 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/12, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/12.MakeWithAssignmentWorks @@ -30788,10 +30832,10 @@ 21: [ RUN ] ArrayRefTest/17.ConstructFromVectorWorks 21: [ OK ] ArrayRefTest/17.ConstructFromVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/17.ConstructFromNonConstVectorWorks -21: [ OK ] ArrayRefTest/17.ConstructFromNonConstVectorWorks (1 ms) +21: [ OK ] ArrayRefTest/17.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/17.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/17.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/17 (4 ms total) +21: [----------] 9 tests from ArrayRefTest/17 (0 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/18, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/18.MakeWithAssignmentWorks @@ -30841,9 +30885,9 @@ 21: [ RUN ] KeyValueTreeSerializerTest.SimpleObject 21: [ OK ] KeyValueTreeSerializerTest.SimpleObject (0 ms) 21: [ RUN ] KeyValueTreeSerializerTest.ObjectWithArrays -21: [ OK ] KeyValueTreeSerializerTest.ObjectWithArrays (1 ms) +21: [ OK ] KeyValueTreeSerializerTest.ObjectWithArrays (0 ms) 21: [ RUN ] KeyValueTreeSerializerTest.ObjectWithObjects -21: [ OK ] KeyValueTreeSerializerTest.ObjectWithObjects (0 ms) +21: [ OK ] KeyValueTreeSerializerTest.ObjectWithObjects (1 ms) 21: [----------] 4 tests from KeyValueTreeSerializerTest (1 ms total) 21: 21: [----------] 6 tests from TreeValueTransformTest @@ -30854,9 +30898,9 @@ 21: [ RUN ] TreeValueTransformTest.SimpleTransformsToObject 21: [ OK ] TreeValueTransformTest.SimpleTransformsToObject (0 ms) 21: [ RUN ] TreeValueTransformTest.ObjectFromString -21: [ OK ] TreeValueTransformTest.ObjectFromString (1 ms) +21: [ OK ] TreeValueTransformTest.ObjectFromString (0 ms) 21: [ RUN ] TreeValueTransformTest.ObjectFromMultipleStrings -21: [ OK ] TreeValueTransformTest.ObjectFromMultipleStrings (0 ms) +21: [ OK ] TreeValueTransformTest.ObjectFromMultipleStrings (1 ms) 21: [ RUN ] TreeValueTransformTest.ScopedTransformRules 21: [ OK ] TreeValueTransformTest.ScopedTransformRules (0 ms) 21: [----------] 6 tests from TreeValueTransformTest (1 ms total) @@ -30868,9 +30912,9 @@ 21: 21: [----------] 2 tests from RegexBasicTest 21: [ RUN ] RegexBasicTest.BasicMatchesWorkWhenSupported -21: [ OK ] RegexBasicTest.BasicMatchesWorkWhenSupported (1 ms) +21: [ OK ] RegexBasicTest.BasicMatchesWorkWhenSupported (0 ms) 21: [ RUN ] RegexBasicTest.MatchesForCharacterClassesWorkWhenSupported -21: [ OK ] RegexBasicTest.MatchesForCharacterClassesWorkWhenSupported (0 ms) +21: [ OK ] RegexBasicTest.MatchesForCharacterClassesWorkWhenSupported (1 ms) 21: [----------] 2 tests from RegexBasicTest (1 ms total) 21: 21: [----------] 5 tests from LoggerTest @@ -30879,12 +30923,12 @@ 21: [ RUN ] LoggerTest.LogsToStream 21: [ OK ] LoggerTest.LogsToStream (0 ms) 21: [ RUN ] LoggerTest.LogsToFile -21: [ OK ] LoggerTest.LogsToFile (1 ms) +21: [ OK ] LoggerTest.LogsToFile (0 ms) 21: [ RUN ] LoggerTest.LevelFilteringWorks 21: [ OK ] LoggerTest.LevelFilteringWorks (0 ms) 21: [ RUN ] LoggerTest.LogsToMultipleStreams 21: [ OK ] LoggerTest.LogsToMultipleStreams (0 ms) -21: [----------] 5 tests from LoggerTest (1 ms total) +21: [----------] 5 tests from LoggerTest (0 ms total) 21: 21: [----------] 4 tests from MutexBasicTest 21: [ RUN ] MutexBasicTest.CanBeMade @@ -30899,12 +30943,12 @@ 21: 21: [----------] 3 tests from MutexTaskTest 21: [ RUN ] MutexTaskTest.MutualExclusionWorksWithLock -21: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (1 ms) +21: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (0 ms) 21: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread 21: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (0 ms) 21: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread 21: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread (0 ms) -21: [----------] 3 tests from MutexTaskTest (1 ms total) +21: [----------] 3 tests from MutexTaskTest (0 ms total) 21: 21: [----------] 4 tests from PathTest 21: [ RUN ] PathTest.StripSourcePrefixWorks @@ -30938,8 +30982,8 @@ 21: [ RUN ] StringUtilityTest.SplitDelimitedString 21: [ OK ] StringUtilityTest.SplitDelimitedString (0 ms) 21: [ RUN ] StringUtilityTest.SplitAndTrimDelimitedString -21: [ OK ] StringUtilityTest.SplitAndTrimDelimitedString (0 ms) -21: [----------] 7 tests from StringUtilityTest (0 ms total) +21: [ OK ] StringUtilityTest.SplitAndTrimDelimitedString (1 ms) +21: [----------] 7 tests from StringUtilityTest (1 ms total) 21: 21: [----------] 2 tests from FormatStringTest 21: [ RUN ] FormatStringTest.HandlesBasicFormatting @@ -30980,7 +31024,7 @@ 21: 21: [----------] 10 tests from TextLineWrapperTest 21: [ RUN ] TextLineWrapperTest.HandlesEmptyStrings -21: [ OK ] TextLineWrapperTest.HandlesEmptyStrings (1 ms) +21: [ OK ] TextLineWrapperTest.HandlesEmptyStrings (0 ms) 21: [ RUN ] TextLineWrapperTest.HandlesTrailingWhitespace 21: [ OK ] TextLineWrapperTest.HandlesTrailingWhitespace (0 ms) 21: [ RUN ] TextLineWrapperTest.HandlesTrailingNewlines @@ -30990,7 +31034,7 @@ 21: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExistingBreaks 21: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExistingBreaks (0 ms) 21: [ RUN ] TextLineWrapperTest.HandlesIndent -21: [ OK ] TextLineWrapperTest.HandlesIndent (0 ms) +21: [ OK ] TextLineWrapperTest.HandlesIndent (1 ms) 21: [ RUN ] TextLineWrapperTest.HandlesIndentWithEmptyLines 21: [ OK ] TextLineWrapperTest.HandlesIndentWithEmptyLines (0 ms) 21: [ RUN ] TextLineWrapperTest.HandlesHangingIndent @@ -31003,7 +31047,7 @@ 21: 21: [----------] 6 tests from TextWriterTest 21: [ RUN ] TextWriterTest.WritesLines -21: [ OK ] TextWriterTest.WritesLines (1 ms) +21: [ OK ] TextWriterTest.WritesLines (0 ms) 21: [ RUN ] TextWriterTest.WritesLinesInParts 21: [ OK ] TextWriterTest.WritesLinesInParts (0 ms) 21: [ RUN ] TextWriterTest.WritesWrappedLines @@ -31014,7 +31058,7 @@ 21: [ OK ] TextWriterTest.TracksNewlines (0 ms) 21: [ RUN ] TextWriterTest.PreservesTrailingWhitespace 21: [ OK ] TextWriterTest.PreservesTrailingWhitespace (0 ms) -21: [----------] 6 tests from TextWriterTest (1 ms total) +21: [----------] 6 tests from TextWriterTest (0 ms total) 21: 21: [----------] 1 test from TypeTraitsTest 21: [ RUN ] TypeTraitsTest.IsIntegralConstant @@ -31033,8 +31077,8 @@ 21: [ RUN ] BitmaskTest32_11/BitmaskTest32.Union/0 21: [ OK ] BitmaskTest32_11/BitmaskTest32.Union/0 (0 ms) 21: [ RUN ] BitmaskTest32_11/BitmaskTest32.ToHex/0 -21: [ OK ] BitmaskTest32_11/BitmaskTest32.ToHex/0 (0 ms) -21: [----------] 6 tests from BitmaskTest32_11/BitmaskTest32 (0 ms total) +21: [ OK ] BitmaskTest32_11/BitmaskTest32.ToHex/0 (1 ms) +21: [----------] 6 tests from BitmaskTest32_11/BitmaskTest32 (1 ms total) 21: 21: [----------] 12 tests from BitmaskTest64_10_42/BitmaskTest64 21: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/0 @@ -31088,17 +31132,17 @@ 21: [ OK ] BitmaskTest128_9_78/BitmaskTest128.ToHex/0 (0 ms) 21: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.ToHex/1 21: [ OK ] BitmaskTest128_9_78/BitmaskTest128.ToHex/1 (0 ms) -21: [----------] 12 tests from BitmaskTest128_9_78/BitmaskTest128 (1 ms total) +21: [----------] 12 tests from BitmaskTest128_9_78/BitmaskTest128 (0 ms total) 21: 21: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 -21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (1 ms) +21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (0 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 (0 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 (0 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 -21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 (1 ms) +21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 (0 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (0 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 @@ -31109,15 +31153,15 @@ 21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 (0 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 (0 ms) -21: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (2 ms total) +21: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (0 ms total) 21: 21: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest 21: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 -21: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 (0 ms) +21: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 (1 ms) 21: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/1 21: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/1 (0 ms) 21: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/2 -21: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/2 (1 ms) +21: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/2 (0 ms) 21: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/3 21: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/3 (0 ms) 21: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/4 @@ -31129,9 +31173,9 @@ 21: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest (1 ms total) 21: 21: [----------] Global test environment tear-down -21: [==========] 325 tests from 52 test cases ran. (20 ms total) +21: [==========] 325 tests from 52 test cases ran. (13 ms total) 21: [ PASSED ] 325 tests. -21/40 Test #21: UtilityUnitTests ................. Passed 0.05 sec +21/40 Test #21: UtilityUnitTests ................. Passed 0.04 sec test 22 Start 22: UtilityMpiUnitTests @@ -31141,15 +31185,15 @@ 22: [----------] Global test environment set-up. 22: [----------] 2 tests from PhysicalNodeCommunicatorTest 22: [ RUN ] PhysicalNodeCommunicatorTest.CanConstruct -22: [ OK ] PhysicalNodeCommunicatorTest.CanConstruct (53 ms) +22: [ OK ] PhysicalNodeCommunicatorTest.CanConstruct (1 ms) 22: [ RUN ] PhysicalNodeCommunicatorTest.CanCallBarrier -22: [ OK ] PhysicalNodeCommunicatorTest.CanCallBarrier (27 ms) -22: [----------] 2 tests from PhysicalNodeCommunicatorTest (80 ms total) +22: [ OK ] PhysicalNodeCommunicatorTest.CanCallBarrier (0 ms) +22: [----------] 2 tests from PhysicalNodeCommunicatorTest (1 ms total) 22: 22: [----------] Global test environment tear-down -22: [==========] 2 tests from 1 test case ran. (81 ms total) +22: [==========] 2 tests from 1 test case ran. (1 ms total) 22: [ PASSED ] 2 tests. -22/40 Test #22: UtilityMpiUnitTests .............. Passed 0.10 sec +22/40 Test #22: UtilityMpiUnitTests .............. Passed 0.02 sec test 23 Start 23: FileIOTests @@ -31159,9 +31203,9 @@ 23: [----------] Global test environment set-up. 23: [----------] 2 tests from FileMD5Test 23: [ RUN ] FileMD5Test.CanComputeMD5 -23: [ OK ] FileMD5Test.CanComputeMD5 (1 ms) +23: [ OK ] FileMD5Test.CanComputeMD5 (0 ms) 23: [ RUN ] FileMD5Test.ReturnsErrorIfFileModeIsWrong -23: [ OK ] FileMD5Test.ReturnsErrorIfFileModeIsWrong (0 ms) +23: [ OK ] FileMD5Test.ReturnsErrorIfFileModeIsWrong (1 ms) 23: [----------] 2 tests from FileMD5Test (1 ms total) 23: 23: [----------] 9 tests from ReadTest @@ -31174,7 +31218,7 @@ 23: integer value 23: 23: -23: [ OK ] ReadTest.get_eint_WarnsAboutFloat (5 ms) +23: [ OK ] ReadTest.get_eint_WarnsAboutFloat (0 ms) 23: [ RUN ] ReadTest.get_eint_WarnsAboutString 23: 23: ERROR 1 [file unknown, line 0]: @@ -31213,7 +31257,7 @@ 23: 23: 23: [ OK ] ReadTest.get_ereal_WarnsAboutString (0 ms) -23: [----------] 9 tests from ReadTest (5 ms total) +23: [----------] 9 tests from ReadTest (0 ms total) 23: 23: [----------] 2 tests from TngTest 23: [ RUN ] TngTest.CanOpenTngFile @@ -31226,17 +31270,17 @@ 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 (1 ms) 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 -23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (1 ms) +23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (0 ms) 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 -23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (3 ms) +23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (4 ms) 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 -23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (1 ms) -23: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (6 ms total) +23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (0 ms) +23: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (5 ms total) 23: 23: [----------] Global test environment tear-down -23: [==========] 17 tests from 4 test cases ran. (12 ms total) +23: [==========] 17 tests from 4 test cases ran. (7 ms total) 23: [ PASSED ] 17 tests. -23/40 Test #23: FileIOTests ...................... Passed 0.03 sec +23/40 Test #23: FileIOTests ...................... Passed 0.02 sec test 24 Start 24: PullTest @@ -31280,21 +31324,21 @@ 25: 25: [----------] 8 tests from WithParameters/BiasTest 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/0 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (1 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (0 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/1 25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/1 (0 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/2 25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/2 (1 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/3 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (1 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (0 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/4 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/4 (0 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/4 (1 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/5 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/5 (1 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/5 (0 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/6 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (1 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (0 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/7 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/7 (0 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/7 (1 ms) 25: [----------] 8 tests from WithParameters/BiasTest (5 ms total) 25: 25: [----------] 2 tests from WithParameters/BiasStateTest @@ -31305,7 +31349,7 @@ 25: [----------] 2 tests from WithParameters/BiasStateTest (0 ms total) 25: 25: [----------] Global test environment tear-down -25: [==========] 12 tests from 4 test cases ran. (9 ms total) +25: [==========] 12 tests from 4 test cases ran. (8 ms total) 25: [ PASSED ] 12 tests. 25/40 Test #25: AwhTest .......................... Passed 0.03 sec test 26 @@ -31438,7 +31482,7 @@ 26: [ RUN ] SimdFloatingpointUtilTest.transposeScatterDecrU3 26: [ OK ] SimdFloatingpointUtilTest.transposeScatterDecrU3 (0 ms) 26: [ RUN ] SimdFloatingpointUtilTest.transposeScatterDecrU3Overlapping -26: [ OK ] SimdFloatingpointUtilTest.transposeScatterDecrU3Overlapping (0 ms) +26: [ OK ] SimdFloatingpointUtilTest.transposeScatterDecrU3Overlapping (1 ms) 26: [ RUN ] SimdFloatingpointUtilTest.expandScalarsToTriplets 26: [ OK ] SimdFloatingpointUtilTest.expandScalarsToTriplets (0 ms) 26: [ RUN ] SimdFloatingpointUtilTest.gatherLoadBySimdIntTranspose4 @@ -31464,21 +31508,21 @@ 26: [ RUN ] SimdMathTest.copysign 26: [ OK ] SimdMathTest.copysign (0 ms) 26: [ RUN ] SimdMathTest.invsqrt -26: [ OK ] SimdMathTest.invsqrt (2 ms) +26: [ OK ] SimdMathTest.invsqrt (1 ms) 26: [ RUN ] SimdMathTest.maskzInvsqrt 26: [ OK ] SimdMathTest.maskzInvsqrt (0 ms) 26: [ RUN ] SimdMathTest.invsqrtPair -26: [ OK ] SimdMathTest.invsqrtPair (2 ms) +26: [ OK ] SimdMathTest.invsqrtPair (1 ms) 26: [ RUN ] SimdMathTest.sqrt -26: [ OK ] SimdMathTest.sqrt (1 ms) +26: [ OK ] SimdMathTest.sqrt (2 ms) 26: [ RUN ] SimdMathTest.sqrtUnsafe -26: [ OK ] SimdMathTest.sqrtUnsafe (1 ms) +26: [ OK ] SimdMathTest.sqrtUnsafe (0 ms) 26: [ RUN ] SimdMathTest.inv -26: [ OK ] SimdMathTest.inv (1 ms) +26: [ OK ] SimdMathTest.inv (2 ms) 26: [ RUN ] SimdMathTest.maskzInv 26: [ OK ] SimdMathTest.maskzInv (0 ms) 26: [ RUN ] SimdMathTest.log -26: [ OK ] SimdMathTest.log (2 ms) +26: [ OK ] SimdMathTest.log (1 ms) 26: [ RUN ] SimdMathTest.exp2 26: [ OK ] SimdMathTest.exp2 (4 ms) 26: [ RUN ] SimdMathTest.exp2Unsafe @@ -31490,17 +31534,17 @@ 26: [ RUN ] SimdMathTest.erf 26: [ OK ] SimdMathTest.erf (2 ms) 26: [ RUN ] SimdMathTest.erfc -26: [ OK ] SimdMathTest.erfc (3 ms) +26: [ OK ] SimdMathTest.erfc (2 ms) 26: [ RUN ] SimdMathTest.sin -26: [ OK ] SimdMathTest.sin (2 ms) +26: [ OK ] SimdMathTest.sin (3 ms) 26: [ RUN ] SimdMathTest.cos -26: [ OK ] SimdMathTest.cos (3 ms) +26: [ OK ] SimdMathTest.cos (2 ms) 26: [ RUN ] SimdMathTest.tan 26: [ OK ] SimdMathTest.tan (7 ms) 26: [ RUN ] SimdMathTest.asin -26: [ OK ] SimdMathTest.asin (1 ms) +26: [ OK ] SimdMathTest.asin (2 ms) 26: [ RUN ] SimdMathTest.acos -26: [ OK ] SimdMathTest.acos (2 ms) +26: [ OK ] SimdMathTest.acos (1 ms) 26: [ RUN ] SimdMathTest.atan 26: [ OK ] SimdMathTest.atan (1 ms) 26: [ RUN ] SimdMathTest.atan2 @@ -31514,7 +31558,7 @@ 26: [ RUN ] SimdMathTest.invsqrtPairSingleAccuracy 26: [ OK ] SimdMathTest.invsqrtPairSingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.sqrtSingleAccuracy -26: [ OK ] SimdMathTest.sqrtSingleAccuracy (2 ms) +26: [ OK ] SimdMathTest.sqrtSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.sqrtSingleAccuracyUnsafe 26: [ OK ] SimdMathTest.sqrtSingleAccuracyUnsafe (1 ms) 26: [ RUN ] SimdMathTest.invSingleAccuracy @@ -31524,7 +31568,7 @@ 26: [ RUN ] SimdMathTest.exp2SingleAccuracy 26: [ OK ] SimdMathTest.exp2SingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.exp2SingleAccuracyUnsafe -26: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (1 ms) +26: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (2 ms) 26: [ RUN ] SimdMathTest.expSingleAccuracy 26: [ OK ] SimdMathTest.expSingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.expSingleAccuracyUnsafe @@ -31532,26 +31576,26 @@ 26: [ RUN ] SimdMathTest.erfSingleAccuracy 26: [ OK ] SimdMathTest.erfSingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.erfcSingleAccuracy -26: [ OK ] SimdMathTest.erfcSingleAccuracy (2 ms) +26: [ OK ] SimdMathTest.erfcSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.sinSingleAccuracy 26: [ OK ] SimdMathTest.sinSingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.cosSingleAccuracy -26: [ OK ] SimdMathTest.cosSingleAccuracy (3 ms) +26: [ OK ] SimdMathTest.cosSingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.tanSingleAccuracy -26: [ OK ] SimdMathTest.tanSingleAccuracy (6 ms) +26: [ OK ] SimdMathTest.tanSingleAccuracy (7 ms) 26: [ RUN ] SimdMathTest.asinSingleAccuracy 26: [ OK ] SimdMathTest.asinSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.acosSingleAccuracy -26: [ OK ] SimdMathTest.acosSingleAccuracy (1 ms) +26: [ OK ] SimdMathTest.acosSingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.atanSingleAccuracy 26: [ OK ] SimdMathTest.atanSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.atan2SingleAccuracy 26: [ OK ] SimdMathTest.atan2SingleAccuracy (0 ms) 26: [ RUN ] SimdMathTest.pmeForceCorrectionSingleAccuracy -26: [ OK ] SimdMathTest.pmeForceCorrectionSingleAccuracy (3 ms) +26: [ OK ] SimdMathTest.pmeForceCorrectionSingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.pmePotentialCorrectionSingleAccuracy 26: [ OK ] SimdMathTest.pmePotentialCorrectionSingleAccuracy (2 ms) -26: [----------] 45 tests from SimdMathTest (83 ms total) +26: [----------] 45 tests from SimdMathTest (79 ms total) 26: 26: [----------] 1 test from EmptyArrayRefTest 26: [ RUN ] EmptyArrayRefTest.IsEmpty @@ -31746,7 +31790,7 @@ 26: [ OK ] SimdScalarTest.cvtIB2B (0 ms) 26: [ RUN ] SimdScalarTest.expandScalarsToTriplets 26: [ OK ] SimdScalarTest.expandScalarsToTriplets (0 ms) -26: [----------] 41 tests from SimdScalarTest (1 ms total) +26: [----------] 41 tests from SimdScalarTest (0 ms total) 26: 26: [----------] 8 tests from SimdScalarUtilTest 26: [ RUN ] SimdScalarUtilTest.gatherLoadTranspose @@ -31793,7 +31837,7 @@ 26: [ RUN ] SimdScalarMathTest.cos 26: [ OK ] SimdScalarMathTest.cos (0 ms) 26: [ RUN ] SimdScalarMathTest.tan -26: [ OK ] SimdScalarMathTest.tan (0 ms) +26: [ OK ] SimdScalarMathTest.tan (1 ms) 26: [ RUN ] SimdScalarMathTest.asin 26: [ OK ] SimdScalarMathTest.asin (0 ms) 26: [ RUN ] SimdScalarMathTest.acos @@ -31842,10 +31886,10 @@ 26: [ OK ] SimdScalarMathTest.pmeForceCorrectionSingleAccuracy (0 ms) 26: [ RUN ] SimdScalarMathTest.pmePotentialCorrectionSingleAccuracy 26: [ OK ] SimdScalarMathTest.pmePotentialCorrectionSingleAccuracy (0 ms) -26: [----------] 37 tests from SimdScalarMathTest (0 ms total) +26: [----------] 37 tests from SimdScalarMathTest (1 ms total) 26: 26: [----------] Global test environment tear-down -26: [==========] 236 tests from 19 test cases ran. (85 ms total) +26: [==========] 236 tests from 19 test cases ran. (82 ms total) 26: [ PASSED ] 236 tests. 26/40 Test #26: SimdUnitTests .................... Passed 0.11 sec test 27 @@ -31906,7 +31950,7 @@ 28: [ RUN ] Entropy.QuasiHarmonic_200_NoLinear 28: [ OK ] Entropy.QuasiHarmonic_200_NoLinear (0 ms) 28: [ RUN ] Entropy.QuasiHarmonic_200_Linear -28: [ OK ] Entropy.QuasiHarmonic_200_Linear (0 ms) +28: [ OK ] Entropy.QuasiHarmonic_200_Linear (1 ms) 28: [----------] 5 tests from Entropy (1 ms total) 28: 28: [----------] 3 tests from MsdTest @@ -31922,7 +31966,7 @@ 28: Fitting from 1 to 8 ps 28: 28: D[ particles] 4.0000 (+/- 0.0000) 1e-5 cm^2/s -28: [ OK ] MsdTest.threeDimensionalDiffusion (2 ms) +28: [ OK ] MsdTest.threeDimensionalDiffusion (6 ms) 28: [ RUN ] MsdTest.twoDimensionalDiffusion 28: 28: Select a group to calculate mean squared displacement for: @@ -31935,7 +31979,7 @@ 28: Fitting from 1 to 8 ps 28: 28: D[ particles] 6.0000 (+/- 0.0000) 1e-5 cm^2/s -28: [ OK ] MsdTest.twoDimensionalDiffusion (1 ms) +28: [ OK ] MsdTest.twoDimensionalDiffusion (2 ms) 28: [ RUN ] MsdTest.oneDimensionalDiffusion 28: 28: Select a group to calculate mean squared displacement for: @@ -31949,7 +31993,7 @@ 28: 28: D[ particles] 8.0000 (+/- 0.0000) 1e-5 cm^2/s 28: [ OK ] MsdTest.oneDimensionalDiffusion (2 ms) -28: [----------] 3 tests from MsdTest (5 ms total) +28: [----------] 3 tests from MsdTest (10 ms total) 28: 28: [----------] 6 tests from NoFatalErrorWhenWritingFrom/GmxTraj 28: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/0 @@ -31959,7 +32003,7 @@ 28: Select a group: trr version: GMX_trn_file (single precision) 28: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 28: Selected 0: 'System' -28: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/0 (2 ms) +28: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/0 (3 ms) 28: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/1 28: Group 0 ( System) has 6 elements 28: Group 1 ( Water) has 6 elements @@ -31981,7 +32025,7 @@ 28: Select a group: Reading frames from gro file '', 6 atoms. 28: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 28: Selected 0: 'System' -28: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/3 (2 ms) +28: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/3 (3 ms) 28: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/4 28: Group 0 ( System) has 6 elements 28: Group 1 ( Water) has 6 elements @@ -31996,8 +32040,8 @@ 28: Group 2 ( SOL) has 6 elements 28: Select a group: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 28: Selected 0: 'System' -28: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/5 (8 ms) -28: [----------] 6 tests from NoFatalErrorWhenWritingFrom/GmxTraj (21 ms total) +28: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/5 (2 ms) +28: [----------] 6 tests from NoFatalErrorWhenWritingFrom/GmxTraj (17 ms total) 28: 28: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset 28: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/0 @@ -32009,7 +32053,7 @@ 28: 28: Note that major changes are planned in future for trjconv, to improve usability and utility.Select group for output 28: Selected 2: 'SecondWaterMolecule' -28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/0 (4 ms) +28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/0 (9 ms) 28: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/1 28: Will write tng: Trajectory file (tng format) 28: Group 0 ( System) has 6 elements @@ -32057,7 +32101,7 @@ 28: 28: Note that major changes are planned in future for trjconv, to improve usability and utility.Select group for output 28: Selected 2: 'SecondWaterMolecule' -28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/4 (2 ms) +28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/4 (3 ms) 28: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/5 28: Will write tng: Trajectory file (tng format) 28: Group 0 ( System) has 6 elements @@ -32068,7 +32112,7 @@ 28: Note that major changes are planned in future for trjconv, to improve usability and utility.Select group for output 28: Selected 2: 'SecondWaterMolecule' 28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/5 (3 ms) -28: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset (19 ms total) +28: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset (25 ms total) 28: 28: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile 28: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/0 @@ -32092,7 +32136,7 @@ 28: 28: Note that major changes are planned in future for trjconv, to improve usability and utility.Select group for output 28: Selected 2: 'SecondWaterMolecule' -28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/1 (1 ms) +28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/1 (2 ms) 28: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/2 28: Will write trr: Trajectory in portable xdr format 28: Group 0 ( System) has 6 elements @@ -32102,7 +32146,7 @@ 28: 28: Note that major changes are planned in future for trjconv, to improve usability and utility.Select group for output 28: Selected 2: 'SecondWaterMolecule' -28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/2 (0 ms) +28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/2 (1 ms) 28: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/3 28: Will write trr: Trajectory in portable xdr format 28: Group 0 ( System) has 6 elements @@ -32115,7 +32159,7 @@ 28: 28: Note that major changes are planned in future for trjconv, to improve usability and utility.Select group for output 28: Selected 2: 'SecondWaterMolecule' -28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/3 (2 ms) +28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/3 (1 ms) 28: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/4 28: Will write trr: Trajectory in portable xdr format 28: Group 0 ( System) has 6 elements @@ -32128,7 +32172,7 @@ 28: 28: Note that major changes are planned in future for trjconv, to improve usability and utility.Select group for output 28: Selected 2: 'SecondWaterMolecule' -28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/4 (0 ms) +28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/4 (1 ms) 28: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/5 28: Will write trr: Trajectory in portable xdr format 28: Group 0 ( System) has 6 elements @@ -32138,11 +32182,11 @@ 28: 28: Note that major changes are planned in future for trjconv, to improve usability and utility.Select group for output 28: Selected 2: 'SecondWaterMolecule' -28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/5 (0 ms) +28: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/5 (1 ms) 28: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile (7 ms total) 28: 28: [----------] Global test environment tear-down -28: [==========] 26 tests from 5 test cases ran. (53 ms total) +28: [==========] 26 tests from 5 test cases ran. (60 ms total) 28: [ PASSED ] 26 tests. 28/40 Test #28: GmxAnaTest ....................... Passed 0.08 sec test 29 @@ -32154,9 +32198,9 @@ 29: [----------] Global test environment set-up. 29: [----------] 4 tests from GenconfTest 29: [ RUN ] GenconfTest.nbox_Works -29: [ OK ] GenconfTest.nbox_Works (2 ms) +29: [ OK ] GenconfTest.nbox_Works (1 ms) 29: [ RUN ] GenconfTest.nbox_norenumber_Works -29: [ OK ] GenconfTest.nbox_norenumber_Works (0 ms) +29: [ OK ] GenconfTest.nbox_norenumber_Works (1 ms) 29: [ RUN ] GenconfTest.nbox_dist_Works 29: [ OK ] GenconfTest.nbox_dist_Works (1 ms) 29: [ RUN ] GenconfTest.nbox_rot_Works @@ -32172,7 +32216,7 @@ 29: center of geometry: 1.733667, 1.477000, 0.905167 29: center of geometry: 1.733667, 1.477000, 0.905167 29: center of geometry: 1.733667, 1.477000, 0.905167 -29: [ OK ] GenconfTest.nbox_rot_Works (1 ms) +29: [ OK ] GenconfTest.nbox_rot_Works (2 ms) 29: [----------] 4 tests from GenconfTest (5 ms total) 29: 29: [----------] 5 tests from InsertMoleculesTest @@ -32204,7 +32248,7 @@ 29: Writing generated configuration to /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoExistingConfiguration_out.gro 29: 29: Output configuration contains 8 atoms in 4 residues -29: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoExistingConfiguration (3 ms) +29: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoExistingConfiguration (4 ms) 29: [ RUN ] InsertMoleculesTest.InsertsMoleculesIntoEmptyBox 29: Initialising inter-atomic distances... 29: @@ -32266,7 +32310,7 @@ 29: Writing generated configuration to /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoEnlargedBox_out.gro 29: 29: Output configuration contains 10 atoms in 4 residues -29: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoEnlargedBox (6 ms) +29: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoEnlargedBox (3 ms) 29: [ RUN ] InsertMoleculesTest.InsertsMoleculesWithReplacement 29: Reading solute configuration 29: Initialising inter-atomic distances... @@ -32299,7 +32343,7 @@ 29: Writing generated configuration to /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesWithReplacement_out.gro 29: 29: Output configuration contains 632 atoms in 212 residues -29: [ OK ] InsertMoleculesTest.InsertsMoleculesWithReplacement (13 ms) +29: [ OK ] InsertMoleculesTest.InsertsMoleculesWithReplacement (15 ms) 29: [ RUN ] InsertMoleculesTest.InsertsMoleculesIntoFixedPositions 29: Initialising inter-atomic distances... 29: @@ -32346,9 +32390,9 @@ 29: 29: Ignoring obsolete mdp entry 'title' 29: Replacing old mdp entry 'xtc_grps' by 'compressed-x-grps' -29: [ OK ] GetIrTest.HandlesDifferentKindsOfMdpLines (4 ms) +29: [ OK ] GetIrTest.HandlesDifferentKindsOfMdpLines (5 ms) 29: [ RUN ] GetIrTest.HandlesOnlyCutoffScheme -29: [ OK ] GetIrTest.HandlesOnlyCutoffScheme (3 ms) +29: [ OK ] GetIrTest.HandlesOnlyCutoffScheme (4 ms) 29: [ RUN ] GetIrTest.UserErrorsSilentlyTolerated 29: 29: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_UserErrorsSilentlyTolerated_input.mdp, line 5]: @@ -32366,7 +32410,7 @@ 29: scheme was introduced, but the group scheme was still the default. The 29: default is now the Verlet scheme, so you will observe different behaviour. 29: -29: [ OK ] GetIrTest.DefineHandlesAssignmentOnRhs (8 ms) +29: [ OK ] GetIrTest.DefineHandlesAssignmentOnRhs (4 ms) 29: [ RUN ] GetIrTest.EmptyInputWorks 29: 29: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_EmptyInputWorks_input.mdp, line 1]: @@ -32384,7 +32428,7 @@ 29: scheme was introduced, but the group scheme was still the default. The 29: default is now the Verlet scheme, so you will observe different behaviour. 29: -29: [ OK ] GetIrTest.ProducesOutputFromElectricField (3 ms) +29: [ OK ] GetIrTest.ProducesOutputFromElectricField (4 ms) 29: [ RUN ] GetIrTest.ProducesOutputFromElectricFieldPulsed 29: 29: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricFieldPulsed_input.mdp, line 2]: @@ -32393,7 +32437,7 @@ 29: scheme was introduced, but the group scheme was still the default. The 29: default is now the Verlet scheme, so you will observe different behaviour. 29: -29: [ OK ] GetIrTest.ProducesOutputFromElectricFieldPulsed (4 ms) +29: [ OK ] GetIrTest.ProducesOutputFromElectricFieldPulsed (5 ms) 29: [ RUN ] GetIrTest.ProducesOutputFromElectricFieldOscillating 29: 29: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricFieldOscillating_input.mdp, line 2]: @@ -32404,7 +32448,7 @@ 29: 29: [ OK ] GetIrTest.ProducesOutputFromElectricFieldOscillating (4 ms) 29: [ RUN ] GetIrTest.TerminatesOnDuplicateOldAndNewKeys -29: [ OK ] GetIrTest.TerminatesOnDuplicateOldAndNewKeys (7 ms) +29: [ OK ] GetIrTest.TerminatesOnDuplicateOldAndNewKeys (3 ms) 29: [ RUN ] GetIrTest.ImplicitSolventNoWorks 29: 29: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ImplicitSolventNoWorks_input.mdp, line 2]: @@ -32425,7 +32469,7 @@ 29: default is now the Verlet scheme, so you will observe different behaviour. 29: 29: [ OK ] GetIrTest.HandlesMimic (4 ms) -29: [----------] 12 tests from GetIrTest (55 ms total) +29: [----------] 12 tests from GetIrTest (51 ms total) 29: 29: [----------] 5 tests from SolvateTest 29: [ RUN ] SolvateTest.cs_box_Works @@ -32505,7 +32549,7 @@ 29: Density : 974.776 (g/l) 29: Number of solvent molecules: 886 29: -29: [ OK ] SolvateTest.cs_cp_Works (62 ms) +29: [ OK ] SolvateTest.cs_cp_Works (59 ms) 29: [ RUN ] SolvateTest.cs_cp_p_Works 29: Reading solute configuration 29: Reading solvent configuration @@ -32547,7 +32591,7 @@ 29: 29: Processing topology 29: Adding line for 886 solvent molecules with resname (SOL) to topology file (/build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_cs_cp_p_Works.top) -29: [ OK ] SolvateTest.cs_cp_p_Works (57 ms) +29: [ OK ] SolvateTest.cs_cp_p_Works (60 ms) 29: [ RUN ] SolvateTest.shell_Works 29: Reading solute configuration 29: Reading solvent configuration @@ -32632,13 +32676,13 @@ 29: Processing topology 29: Adding line for 1876 solvent molecules with resname (HOH) to topology file (/build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_update_Topology_Works_simple.top) 29: Adding line for 2169 solvent molecules with resname (SOL) to topology file (/build/gromacs-2019.1/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_update_Topology_Works_simple.top) -29: [ OK ] SolvateTest.update_Topology_Works (226 ms) -29: [----------] 5 tests from SolvateTest (390 ms total) +29: [ OK ] SolvateTest.update_Topology_Works (238 ms) +29: [----------] 5 tests from SolvateTest (404 ms total) 29: 29: [----------] Global test environment tear-down -29: [==========] 26 tests from 4 test cases ran. (478 ms total) +29: [==========] 26 tests from 4 test cases ran. (488 ms total) 29: [ PASSED ] 26 tests. -29/40 Test #29: GmxPreprocessTests ............... Passed 0.50 sec +29/40 Test #29: GmxPreprocessTests ............... Passed 0.51 sec test 30 Start 30: Pdb2gmxTest @@ -32708,7 +32752,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Oplsaa force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/0 (459 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/0 (490 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/1 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -32771,7 +32815,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Oplsaa force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/1 (521 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/1 (554 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/2 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -32832,7 +32876,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Oplsaa force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/2 (477 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/2 (517 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/3 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -32893,7 +32937,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Oplsaa force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/3 (440 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/3 (469 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/4 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -32958,7 +33002,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Oplsaa force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/4 (504 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/4 (549 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/5 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -33024,7 +33068,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Oplsaa force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/5 (603 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/5 (604 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/6 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -33088,7 +33132,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Oplsaa force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/6 (553 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/6 (542 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/7 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -33152,7 +33196,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Oplsaa force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/7 (486 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/7 (518 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/8 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -33214,7 +33258,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Oplsaa force field and the tip4p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/8 (483 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/8 (485 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/9 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -33277,7 +33321,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Oplsaa force field and the tip4p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/9 (517 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/9 (546 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/10 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -33338,7 +33382,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Oplsaa force field and the tip4p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/10 (476 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/10 (496 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/11 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -33399,7 +33443,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Oplsaa force field and the tip4p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/11 (425 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/11 (438 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/12 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -33464,7 +33508,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Oplsaa force field and the tip4p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/12 (499 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/12 (519 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/13 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -33530,7 +33574,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Oplsaa force field and the tip4p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/13 (560 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/13 (587 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/14 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -33594,7 +33638,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Oplsaa force field and the tip4p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/14 (525 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/14 (558 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/15 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -33658,7 +33702,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Oplsaa force field and the tip4p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/15 (466 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/15 (481 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/16 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -33720,7 +33764,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Oplsaa force field and the tip5p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/16 (474 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/16 (478 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/17 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -33783,7 +33827,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Oplsaa force field and the tip5p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/17 (533 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/17 (556 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/18 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -33844,7 +33888,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Oplsaa force field and the tip5p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/18 (486 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/18 (503 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/19 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -33905,7 +33949,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Oplsaa force field and the tip5p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/19 (441 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/19 (458 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/20 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -33970,7 +34014,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Oplsaa force field and the tip5p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/20 (505 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/20 (528 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/21 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -34036,7 +34080,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Oplsaa force field and the tip5p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/21 (575 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/21 (587 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/22 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -34100,7 +34144,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Oplsaa force field and the tip5p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/22 (533 ms) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/22 (535 ms) 30: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/23 30: Opening force field file /build/gromacs-2019.1/share/top/oplsaa.ff/aminoacids.r2b 30: All occupancies are one @@ -34164,8 +34208,8 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Oplsaa force field and the tip5p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/23 (467 ms) -30: [----------] 24 tests from ForOplsaa/Pdb2gmxTest (12012 ms total) +30: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/23 (496 ms) +30: [----------] 24 tests from ForOplsaa/Pdb2gmxTest (12494 ms total) 30: 30: [----------] 16 tests from ForGromos43a1/Pdb2gmxTest 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -34244,7 +34288,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Gromos43a1 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/0 (248 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/0 (260 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/1 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -34322,7 +34366,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Gromos43a1 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/1 (284 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/1 (310 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/2 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -34398,7 +34442,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Gromos43a1 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/2 (253 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/2 (261 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/3 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -34474,7 +34518,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Gromos43a1 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/3 (234 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/3 (239 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/4 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -34554,7 +34598,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Gromos43a1 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/4 (258 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/4 (269 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/5 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -34635,7 +34679,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Gromos43a1 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/5 (307 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/5 (322 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/6 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -34714,7 +34758,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Gromos43a1 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/6 (262 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/6 (277 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/7 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -34793,7 +34837,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Gromos43a1 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/7 (243 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/7 (248 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/8 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -34870,7 +34914,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Gromos43a1 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/8 (235 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/8 (255 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/9 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -34948,7 +34992,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Gromos43a1 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/9 (280 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/9 (306 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/10 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -35024,7 +35068,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Gromos43a1 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/10 (250 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/10 (263 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/11 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -35100,7 +35144,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Gromos43a1 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/11 (229 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/11 (235 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/12 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -35180,7 +35224,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Gromos43a1 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/12 (257 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/12 (261 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/13 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -35261,7 +35305,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Gromos43a1 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/13 (299 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/13 (321 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/14 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -35340,7 +35384,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Gromos43a1 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/14 (256 ms) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/14 (277 ms) 30: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/15 30: Opening force field file /build/gromacs-2019.1/share/top/gromos43a1.ff/aminoacids.r2b 30: All occupancies are one @@ -35419,8 +35463,8 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Gromos43a1 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/15 (232 ms) -30: [----------] 16 tests from ForGromos43a1/Pdb2gmxTest (4129 ms total) +30: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/15 (251 ms) +30: [----------] 16 tests from ForGromos43a1/Pdb2gmxTest (4355 ms total) 30: 30: [----------] 16 tests from ForGromos53a6/Pdb2gmxTest 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -35503,7 +35547,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Gromos53a6 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/0 (250 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/0 (259 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/1 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -35585,7 +35629,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Gromos53a6 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/1 (292 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/1 (307 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/2 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -35665,7 +35709,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Gromos53a6 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/2 (251 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/2 (255 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/3 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -35745,7 +35789,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Gromos53a6 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/3 (233 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/3 (243 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/4 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -35829,7 +35873,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Gromos53a6 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/4 (263 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/4 (276 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/5 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -35914,7 +35958,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Gromos53a6 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/5 (309 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/5 (318 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/6 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -35997,7 +36041,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Gromos53a6 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/6 (270 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/6 (266 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/7 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -36080,7 +36124,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Gromos53a6 force field and the spc water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/7 (247 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/7 (243 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/8 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -36243,7 +36287,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Gromos53a6 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/9 (298 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/9 (299 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/10 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -36323,7 +36367,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Gromos53a6 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/10 (254 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/10 (268 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/11 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -36403,7 +36447,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Gromos53a6 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/11 (233 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/11 (245 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/12 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -36487,7 +36531,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Gromos53a6 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/12 (262 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/12 (278 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/13 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -36572,7 +36616,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Gromos53a6 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/13 (311 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/13 (331 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/14 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -36655,7 +36699,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Gromos53a6 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/14 (267 ms) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/14 (268 ms) 30: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/15 30: Opening force field file /build/gromacs-2019.1/share/top/gromos53a6.ff/aminoacids.r2b 30: All occupancies are one @@ -36738,8 +36782,8 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Gromos53a6 force field and the spce water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/15 (244 ms) -30: [----------] 16 tests from ForGromos53a6/Pdb2gmxTest (4235 ms total) +30: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/15 (262 ms) +30: [----------] 16 tests from ForGromos53a6/Pdb2gmxTest (4368 ms total) 30: 30: [----------] 8 tests from ForAmber99sb_ildn/Pdb2gmxTest 30: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -36816,7 +36860,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Amber99sb-ildn force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/0 (456 ms) +30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/0 (492 ms) 30: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/1 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/dna.r2b @@ -36892,7 +36936,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Amber99sb-ildn force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/1 (518 ms) +30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/1 (553 ms) 30: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/2 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/dna.r2b @@ -36966,7 +37010,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Amber99sb-ildn force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/2 (484 ms) +30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/2 (487 ms) 30: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/3 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/dna.r2b @@ -37040,7 +37084,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Amber99sb-ildn force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/3 (432 ms) +30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/3 (425 ms) 30: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/4 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/dna.r2b @@ -37118,7 +37162,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Amber99sb-ildn force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/4 (505 ms) +30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/4 (453 ms) 30: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/5 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/dna.r2b @@ -37197,7 +37241,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Amber99sb-ildn force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/5 (562 ms) +30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/5 (503 ms) 30: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/6 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/dna.r2b @@ -37274,7 +37318,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Amber99sb-ildn force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/6 (522 ms) +30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/6 (502 ms) 30: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/7 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/amber99sb-ildn.ff/dna.r2b @@ -37351,8 +37395,8 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Amber99sb-ildn force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/7 (487 ms) -30: [----------] 8 tests from ForAmber99sb_ildn/Pdb2gmxTest (3967 ms total) +30: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/7 (449 ms) +30: [----------] 8 tests from ForAmber99sb_ildn/Pdb2gmxTest (3864 ms total) 30: 30: [----------] 8 tests from ForCharmm27/Pdb2gmxTest 30: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -37438,7 +37482,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/0 (514 ms) +30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/0 (441 ms) 30: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/1 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -37523,7 +37567,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/1 (573 ms) +30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/1 (469 ms) 30: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/2 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -37606,7 +37650,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/2 (521 ms) +30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/2 (430 ms) 30: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/3 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -37689,7 +37733,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/3 (464 ms) +30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/3 (386 ms) 30: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/4 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -37776,7 +37820,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/4 (555 ms) +30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/4 (452 ms) 30: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/5 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -37864,7 +37908,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/5 (607 ms) +30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/5 (497 ms) 30: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/6 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -37950,7 +37994,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/6 (562 ms) +30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/6 (469 ms) 30: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/7 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -38036,8 +38080,8 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/7 (508 ms) -30: [----------] 8 tests from ForCharmm27/Pdb2gmxTest (4304 ms total) +30: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/7 (418 ms) +30: [----------] 8 tests from ForCharmm27/Pdb2gmxTest (3562 ms total) 30: 30: [----------] 8 tests from ChainSep/Pdb2gmxTest 30: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -38134,7 +38178,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/0 (494 ms) +30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/0 (419 ms) 30: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/1 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -38278,7 +38322,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/1 (87 ms) +30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/1 (72 ms) 30: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/2 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -38373,7 +38417,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/2 (495 ms) +30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/2 (423 ms) 30: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/3 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -38517,7 +38561,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/3 (83 ms) +30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/3 (72 ms) 30: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/4 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -38616,7 +38660,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/4 (491 ms) +30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/4 (427 ms) 30: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/5 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -38786,7 +38830,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/5 (85 ms) +30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/5 (82 ms) 30: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/6 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -38877,7 +38921,7 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/6 (503 ms) +30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/6 (442 ms) 30: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/7 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/aminoacids.r2b 30: Opening force field file /build/gromacs-2019.1/share/top/charmm27.ff/rna.r2b @@ -38994,13 +39038,13 @@ 30: You have successfully generated a topology from: /build/gromacs-2019.1/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 30: The Charmm27 force field and the tip3p water model are used. 30: --------- ETON ESAELP ------------ -30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/7 (83 ms) -30: [----------] 8 tests from ChainSep/Pdb2gmxTest (2322 ms total) +30: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/7 (74 ms) +30: [----------] 8 tests from ChainSep/Pdb2gmxTest (2011 ms total) 30: 30: [----------] Global test environment tear-down -30: [==========] 80 tests from 6 test cases ran. (30969 ms total) +30: [==========] 80 tests from 6 test cases ran. (30656 ms total) 30: [ PASSED ] 80 tests. -30/40 Test #30: Pdb2gmxTest ...................... Passed 31.02 sec +30/40 Test #30: Pdb2gmxTest ...................... Passed 30.70 sec test 31 Start 31: CorrelationsTest @@ -39010,36 +39054,36 @@ 31: [----------] Global test environment set-up. 31: [----------] 10 tests from AutocorrTest 31: [ RUN ] AutocorrTest.EacNormal -31: [ OK ] AutocorrTest.EacNormal (31 ms) +31: [ OK ] AutocorrTest.EacNormal (10 ms) 31: [ RUN ] AutocorrTest.EacNoNormalize -31: [ OK ] AutocorrTest.EacNoNormalize (16 ms) +31: [ OK ] AutocorrTest.EacNoNormalize (5 ms) 31: [ RUN ] AutocorrTest.EacCos -31: [ OK ] AutocorrTest.EacCos (60 ms) +31: [ OK ] AutocorrTest.EacCos (10 ms) 31: [ RUN ] AutocorrTest.EacVector -31: [ OK ] AutocorrTest.EacVector (24 ms) +31: [ OK ] AutocorrTest.EacVector (25 ms) 31: [ RUN ] AutocorrTest.EacRcross 31: [ OK ] AutocorrTest.EacRcross (2 ms) 31: [ RUN ] AutocorrTest.EacP0 -31: [ OK ] AutocorrTest.EacP0 (21 ms) +31: [ OK ] AutocorrTest.EacP0 (24 ms) 31: [ RUN ] AutocorrTest.EacP1 -31: [ OK ] AutocorrTest.EacP1 (28 ms) +31: [ OK ] AutocorrTest.EacP1 (27 ms) 31: [ RUN ] AutocorrTest.EacP2 -31: [ OK ] AutocorrTest.EacP2 (52 ms) +31: [ OK ] AutocorrTest.EacP2 (40 ms) 31: [ RUN ] AutocorrTest.EacP3 -31: [ OK ] AutocorrTest.EacP3 (7 ms) +31: [ OK ] AutocorrTest.EacP3 (8 ms) 31: [ RUN ] AutocorrTest.EacP4 -31: [ OK ] AutocorrTest.EacP4 (25 ms) -31: [----------] 10 tests from AutocorrTest (267 ms total) +31: [ OK ] AutocorrTest.EacP4 (22 ms) +31: [----------] 10 tests from AutocorrTest (174 ms total) 31: 31: [----------] 1 test from ManyAutocorrelationTest 31: [ RUN ] ManyAutocorrelationTest.Empty -31: [ OK ] ManyAutocorrelationTest.Empty (1 ms) -31: [----------] 1 test from ManyAutocorrelationTest (1 ms total) +31: [ OK ] ManyAutocorrelationTest.Empty (0 ms) +31: [----------] 1 test from ManyAutocorrelationTest (0 ms total) 31: 31: [----------] Global test environment tear-down -31: [==========] 11 tests from 2 test cases ran. (274 ms total) +31: [==========] 11 tests from 2 test cases ran. (177 ms total) 31: [ PASSED ] 11 tests. -31/40 Test #31: CorrelationsTest ................. Passed 0.30 sec +31/40 Test #31: CorrelationsTest ................. Passed 0.19 sec test 32 Start 32: AnalysisDataUnitTests @@ -39051,10 +39095,10 @@ 32: [ RUN ] AnalysisDataInitializationTest.BasicInitialization 32: [ OK ] AnalysisDataInitializationTest.BasicInitialization (0 ms) 32: [ RUN ] AnalysisDataInitializationTest.ChecksMultiColumnModules -32: [ OK ] AnalysisDataInitializationTest.ChecksMultiColumnModules (0 ms) +32: [ OK ] AnalysisDataInitializationTest.ChecksMultiColumnModules (1 ms) 32: [ RUN ] AnalysisDataInitializationTest.ChecksMultipointModules 32: [ OK ] AnalysisDataInitializationTest.ChecksMultipointModules (0 ms) -32: [----------] 3 tests from AnalysisDataInitializationTest (0 ms total) +32: [----------] 3 tests from AnalysisDataInitializationTest (1 ms total) 32: 32: [----------] 8 tests from AnalysisDataCommonTest/0, where TypeParam = (anonymous namespace)::SimpleInputData 32: [ RUN ] AnalysisDataCommonTest/0.CallsModuleCorrectly @@ -39062,18 +39106,18 @@ 32: [ RUN ] AnalysisDataCommonTest/0.CallsParallelModuleCorrectly 32: [ OK ] AnalysisDataCommonTest/0.CallsParallelModuleCorrectly (1 ms) 32: [ RUN ] AnalysisDataCommonTest/0.CallsMixedModulesCorrectly -32: [ OK ] AnalysisDataCommonTest/0.CallsMixedModulesCorrectly (1 ms) +32: [ OK ] AnalysisDataCommonTest/0.CallsMixedModulesCorrectly (0 ms) 32: [ RUN ] AnalysisDataCommonTest/0.CallsColumnModuleCorrectly 32: [ OK ] AnalysisDataCommonTest/0.CallsColumnModuleCorrectly (1 ms) 32: [ RUN ] AnalysisDataCommonTest/0.CallsModuleCorrectlyWithOutOfOrderFrames -32: [ OK ] AnalysisDataCommonTest/0.CallsModuleCorrectlyWithOutOfOrderFrames (2 ms) +32: [ OK ] AnalysisDataCommonTest/0.CallsModuleCorrectlyWithOutOfOrderFrames (1 ms) 32: [ RUN ] AnalysisDataCommonTest/0.FullStorageWorks -32: [ OK ] AnalysisDataCommonTest/0.FullStorageWorks (0 ms) +32: [ OK ] AnalysisDataCommonTest/0.FullStorageWorks (1 ms) 32: [ RUN ] AnalysisDataCommonTest/0.CanAddModuleAfterStoredData 32: [ OK ] AnalysisDataCommonTest/0.CanAddModuleAfterStoredData (1 ms) 32: [ RUN ] AnalysisDataCommonTest/0.LimitedStorageWorks 32: [ OK ] AnalysisDataCommonTest/0.LimitedStorageWorks (0 ms) -32: [----------] 8 tests from AnalysisDataCommonTest/0 (7 ms total) +32: [----------] 8 tests from AnalysisDataCommonTest/0 (8 ms total) 32: 32: [----------] 8 tests from AnalysisDataCommonTest/1, where TypeParam = (anonymous namespace)::DataSetsInputData 32: [ RUN ] AnalysisDataCommonTest/1.CallsModuleCorrectly @@ -39085,20 +39129,20 @@ 32: [ RUN ] AnalysisDataCommonTest/1.CallsColumnModuleCorrectly 32: [ OK ] AnalysisDataCommonTest/1.CallsColumnModuleCorrectly (1 ms) 32: [ RUN ] AnalysisDataCommonTest/1.CallsModuleCorrectlyWithOutOfOrderFrames -32: [ OK ] AnalysisDataCommonTest/1.CallsModuleCorrectlyWithOutOfOrderFrames (1 ms) +32: [ OK ] AnalysisDataCommonTest/1.CallsModuleCorrectlyWithOutOfOrderFrames (2 ms) 32: [ RUN ] AnalysisDataCommonTest/1.FullStorageWorks -32: [ OK ] AnalysisDataCommonTest/1.FullStorageWorks (1 ms) +32: [ OK ] AnalysisDataCommonTest/1.FullStorageWorks (0 ms) 32: [ RUN ] AnalysisDataCommonTest/1.CanAddModuleAfterStoredData -32: [ OK ] AnalysisDataCommonTest/1.CanAddModuleAfterStoredData (0 ms) +32: [ OK ] AnalysisDataCommonTest/1.CanAddModuleAfterStoredData (1 ms) 32: [ RUN ] AnalysisDataCommonTest/1.LimitedStorageWorks -32: [ OK ] AnalysisDataCommonTest/1.LimitedStorageWorks (1 ms) -32: [----------] 8 tests from AnalysisDataCommonTest/1 (8 ms total) +32: [ OK ] AnalysisDataCommonTest/1.LimitedStorageWorks (0 ms) +32: [----------] 8 tests from AnalysisDataCommonTest/1 (7 ms total) 32: 32: [----------] 8 tests from AnalysisDataCommonTest/2, where TypeParam = (anonymous namespace)::MultipointInputData 32: [ RUN ] AnalysisDataCommonTest/2.CallsModuleCorrectly 32: [ OK ] AnalysisDataCommonTest/2.CallsModuleCorrectly (1 ms) 32: [ RUN ] AnalysisDataCommonTest/2.CallsParallelModuleCorrectly -32: [ OK ] AnalysisDataCommonTest/2.CallsParallelModuleCorrectly (2 ms) +32: [ OK ] AnalysisDataCommonTest/2.CallsParallelModuleCorrectly (1 ms) 32: [ RUN ] AnalysisDataCommonTest/2.CallsMixedModulesCorrectly 32: [ OK ] AnalysisDataCommonTest/2.CallsMixedModulesCorrectly (1 ms) 32: [ RUN ] AnalysisDataCommonTest/2.CallsColumnModuleCorrectly @@ -39108,55 +39152,55 @@ 32: [ RUN ] AnalysisDataCommonTest/2.FullStorageWorks 32: [ OK ] AnalysisDataCommonTest/2.FullStorageWorks (1 ms) 32: [ RUN ] AnalysisDataCommonTest/2.CanAddModuleAfterStoredData -32: [ OK ] AnalysisDataCommonTest/2.CanAddModuleAfterStoredData (1 ms) +32: [ OK ] AnalysisDataCommonTest/2.CanAddModuleAfterStoredData (0 ms) 32: [ RUN ] AnalysisDataCommonTest/2.LimitedStorageWorks -32: [ OK ] AnalysisDataCommonTest/2.LimitedStorageWorks (0 ms) +32: [ OK ] AnalysisDataCommonTest/2.LimitedStorageWorks (1 ms) 32: [----------] 8 tests from AnalysisDataCommonTest/2 (9 ms total) 32: 32: [----------] 8 tests from AnalysisDataCommonTest/3, where TypeParam = (anonymous namespace)::MultipointDataSetsInputData 32: [ RUN ] AnalysisDataCommonTest/3.CallsModuleCorrectly -32: [ OK ] AnalysisDataCommonTest/3.CallsModuleCorrectly (2 ms) +32: [ OK ] AnalysisDataCommonTest/3.CallsModuleCorrectly (1 ms) 32: [ RUN ] AnalysisDataCommonTest/3.CallsParallelModuleCorrectly 32: [ OK ] AnalysisDataCommonTest/3.CallsParallelModuleCorrectly (1 ms) 32: [ RUN ] AnalysisDataCommonTest/3.CallsMixedModulesCorrectly 32: [ OK ] AnalysisDataCommonTest/3.CallsMixedModulesCorrectly (1 ms) 32: [ RUN ] AnalysisDataCommonTest/3.CallsColumnModuleCorrectly -32: [ OK ] AnalysisDataCommonTest/3.CallsColumnModuleCorrectly (2 ms) +32: [ OK ] AnalysisDataCommonTest/3.CallsColumnModuleCorrectly (1 ms) 32: [ RUN ] AnalysisDataCommonTest/3.CallsModuleCorrectlyWithOutOfOrderFrames -32: [ OK ] AnalysisDataCommonTest/3.CallsModuleCorrectlyWithOutOfOrderFrames (1 ms) +32: [ OK ] AnalysisDataCommonTest/3.CallsModuleCorrectlyWithOutOfOrderFrames (2 ms) 32: [ RUN ] AnalysisDataCommonTest/3.FullStorageWorks 32: [ OK ] AnalysisDataCommonTest/3.FullStorageWorks (1 ms) 32: [ RUN ] AnalysisDataCommonTest/3.CanAddModuleAfterStoredData -32: [ OK ] AnalysisDataCommonTest/3.CanAddModuleAfterStoredData (1 ms) +32: [ OK ] AnalysisDataCommonTest/3.CanAddModuleAfterStoredData (0 ms) 32: [ RUN ] AnalysisDataCommonTest/3.LimitedStorageWorks 32: [ OK ] AnalysisDataCommonTest/3.LimitedStorageWorks (1 ms) -32: [----------] 8 tests from AnalysisDataCommonTest/3 (10 ms total) +32: [----------] 8 tests from AnalysisDataCommonTest/3 (8 ms total) 32: 32: [----------] 4 tests from AnalysisArrayDataTest 32: [ RUN ] AnalysisArrayDataTest.CallsModuleCorrectly 32: [ OK ] AnalysisArrayDataTest.CallsModuleCorrectly (1 ms) 32: [ RUN ] AnalysisArrayDataTest.StorageWorks -32: [ OK ] AnalysisArrayDataTest.StorageWorks (0 ms) +32: [ OK ] AnalysisArrayDataTest.StorageWorks (1 ms) 32: [ RUN ] AnalysisArrayDataTest.CanSetXAxis 32: [ OK ] AnalysisArrayDataTest.CanSetXAxis (0 ms) 32: [ RUN ] AnalysisArrayDataTest.CanSetXAxisBeforeRowCount 32: [ OK ] AnalysisArrayDataTest.CanSetXAxisBeforeRowCount (0 ms) -32: [----------] 4 tests from AnalysisArrayDataTest (1 ms total) +32: [----------] 4 tests from AnalysisArrayDataTest (2 ms total) 32: 32: [----------] 6 tests from AverageModuleTest 32: [ RUN ] AverageModuleTest.BasicTest -32: [ OK ] AverageModuleTest.BasicTest (2 ms) +32: [ OK ] AverageModuleTest.BasicTest (1 ms) 32: [ RUN ] AverageModuleTest.HandlesMultipointData -32: [ OK ] AverageModuleTest.HandlesMultipointData (2 ms) +32: [ OK ] AverageModuleTest.HandlesMultipointData (1 ms) 32: [ RUN ] AverageModuleTest.HandlesMultipleDataSets -32: [ OK ] AverageModuleTest.HandlesMultipleDataSets (1 ms) +32: [ OK ] AverageModuleTest.HandlesMultipleDataSets (2 ms) 32: [ RUN ] AverageModuleTest.HandlesDataSetAveraging -32: [ OK ] AverageModuleTest.HandlesDataSetAveraging (2 ms) +32: [ OK ] AverageModuleTest.HandlesDataSetAveraging (1 ms) 32: [ RUN ] AverageModuleTest.CanCustomizeXAxis -32: [ OK ] AverageModuleTest.CanCustomizeXAxis (2 ms) +32: [ OK ] AverageModuleTest.CanCustomizeXAxis (1 ms) 32: [ RUN ] AverageModuleTest.CanCustomizeNonUniformXAxis 32: [ OK ] AverageModuleTest.CanCustomizeNonUniformXAxis (1 ms) -32: [----------] 6 tests from AverageModuleTest (10 ms total) +32: [----------] 6 tests from AverageModuleTest (8 ms total) 32: 32: [----------] 2 tests from FrameAverageModuleTest 32: [ RUN ] FrameAverageModuleTest.BasicTest @@ -39184,19 +39228,19 @@ 32: 32: [----------] 2 tests from SimpleHistogramModuleTest 32: [ RUN ] SimpleHistogramModuleTest.ComputesCorrectly -32: [ OK ] SimpleHistogramModuleTest.ComputesCorrectly (3 ms) +32: [ OK ] SimpleHistogramModuleTest.ComputesCorrectly (2 ms) 32: [ RUN ] SimpleHistogramModuleTest.ComputesCorrectlyWithAll 32: [ OK ] SimpleHistogramModuleTest.ComputesCorrectlyWithAll (2 ms) -32: [----------] 2 tests from SimpleHistogramModuleTest (5 ms total) +32: [----------] 2 tests from SimpleHistogramModuleTest (4 ms total) 32: 32: [----------] 3 tests from WeightedHistogramModuleTest 32: [ RUN ] WeightedHistogramModuleTest.ComputesCorrectly -32: [ OK ] WeightedHistogramModuleTest.ComputesCorrectly (3 ms) +32: [ OK ] WeightedHistogramModuleTest.ComputesCorrectly (2 ms) 32: [ RUN ] WeightedHistogramModuleTest.ComputesCorrectlyWithAll 32: [ OK ] WeightedHistogramModuleTest.ComputesCorrectlyWithAll (2 ms) 32: [ RUN ] WeightedHistogramModuleTest.HandlesMultipleDataSets 32: [ OK ] WeightedHistogramModuleTest.HandlesMultipleDataSets (2 ms) -32: [----------] 3 tests from WeightedHistogramModuleTest (8 ms total) +32: [----------] 3 tests from WeightedHistogramModuleTest (6 ms total) 32: 32: [----------] 3 tests from BinAverageModuleTest 32: [ RUN ] BinAverageModuleTest.ComputesCorrectly @@ -39204,33 +39248,33 @@ 32: [ RUN ] BinAverageModuleTest.ComputesCorrectlyWithAll 32: [ OK ] BinAverageModuleTest.ComputesCorrectlyWithAll (1 ms) 32: [ RUN ] BinAverageModuleTest.HandlesMultipleDataSets -32: [ OK ] BinAverageModuleTest.HandlesMultipleDataSets (2 ms) +32: [ OK ] BinAverageModuleTest.HandlesMultipleDataSets (1 ms) 32: [----------] 3 tests from BinAverageModuleTest (5 ms total) 32: 32: [----------] 4 tests from AbstractAverageHistogramTest 32: [ RUN ] AbstractAverageHistogramTest.ClonesCorrectly -32: [ OK ] AbstractAverageHistogramTest.ClonesCorrectly (3 ms) +32: [ OK ] AbstractAverageHistogramTest.ClonesCorrectly (2 ms) 32: [ RUN ] AbstractAverageHistogramTest.ComputesCumulativeHistogram 32: [ OK ] AbstractAverageHistogramTest.ComputesCumulativeHistogram (2 ms) 32: [ RUN ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidth 32: [ OK ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidth (2 ms) 32: [ RUN ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidthWithIntegerBins 32: [ OK ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidthWithIntegerBins (2 ms) -32: [----------] 4 tests from AbstractAverageHistogramTest (9 ms total) +32: [----------] 4 tests from AbstractAverageHistogramTest (8 ms total) 32: 32: [----------] 3 tests from LifetimeModuleTest 32: [ RUN ] LifetimeModuleTest.BasicTest -32: [ OK ] LifetimeModuleTest.BasicTest (2 ms) +32: [ OK ] LifetimeModuleTest.BasicTest (1 ms) 32: [ RUN ] LifetimeModuleTest.CumulativeTest 32: [ OK ] LifetimeModuleTest.CumulativeTest (1 ms) 32: [ RUN ] LifetimeModuleTest.HandlesMultipleDataSets 32: [ OK ] LifetimeModuleTest.HandlesMultipleDataSets (2 ms) -32: [----------] 3 tests from LifetimeModuleTest (5 ms total) +32: [----------] 3 tests from LifetimeModuleTest (4 ms total) 32: 32: [----------] Global test environment tear-down -32: [==========] 69 tests from 14 test cases ran. (80 ms total) +32: [==========] 69 tests from 14 test cases ran. (73 ms total) 32: [ PASSED ] 69 tests. -32/40 Test #32: AnalysisDataUnitTests ............ Passed 0.10 sec +32/40 Test #32: AnalysisDataUnitTests ............ Passed 0.09 sec test 33 Start 33: SelectionUnitTests @@ -39247,19 +39291,19 @@ 33: [ RUN ] IndexBlockTest.CreatesUnknownBlock 33: [ OK ] IndexBlockTest.CreatesUnknownBlock (0 ms) 33: [ RUN ] IndexBlockTest.CreatesAtomBlock -33: [ OK ] IndexBlockTest.CreatesAtomBlock (0 ms) +33: [ OK ] IndexBlockTest.CreatesAtomBlock (1 ms) 33: [ RUN ] IndexBlockTest.CreatesResidueBlock 33: [ OK ] IndexBlockTest.CreatesResidueBlock (0 ms) 33: [ RUN ] IndexBlockTest.CreatesMoleculeBlock -33: [ OK ] IndexBlockTest.CreatesMoleculeBlock (1 ms) +33: [ OK ] IndexBlockTest.CreatesMoleculeBlock (0 ms) 33: [ RUN ] IndexBlockTest.CreatesResidueBlockWithCompletion 33: [ OK ] IndexBlockTest.CreatesResidueBlockWithCompletion (0 ms) 33: [ RUN ] IndexBlockTest.CreatesMoleculeBlockWithCompletion 33: [ OK ] IndexBlockTest.CreatesMoleculeBlockWithCompletion (0 ms) 33: [ RUN ] IndexBlockTest.CreatesSingleBlock -33: [ OK ] IndexBlockTest.CreatesSingleBlock (0 ms) +33: [ OK ] IndexBlockTest.CreatesSingleBlock (1 ms) 33: [ RUN ] IndexBlockTest.ChecksGroupForFullBlocksPositive -33: [ OK ] IndexBlockTest.ChecksGroupForFullBlocksPositive (1 ms) +33: [ OK ] IndexBlockTest.ChecksGroupForFullBlocksPositive (0 ms) 33: [ RUN ] IndexBlockTest.ChecksOutOfOrderGroupForFullBlocksPositive 33: [ OK ] IndexBlockTest.ChecksOutOfOrderGroupForFullBlocksPositive (0 ms) 33: [ RUN ] IndexBlockTest.ChecksGroupForFullBlocksNegative @@ -39278,7 +39322,7 @@ 33: 33: [----------] 11 tests from IndexMapTest 33: [ RUN ] IndexMapTest.InitializesAtomBlock -33: [ OK ] IndexMapTest.InitializesAtomBlock (1 ms) +33: [ OK ] IndexMapTest.InitializesAtomBlock (0 ms) 33: [ RUN ] IndexMapTest.InitializesOrgIdGroupAtom 33: [ OK ] IndexMapTest.InitializesOrgIdGroupAtom (0 ms) 33: [ RUN ] IndexMapTest.InitializesOrgIdGroupSingle @@ -39292,34 +39336,34 @@ 33: [ RUN ] IndexMapTest.InitializesMoleculeBlock 33: [ OK ] IndexMapTest.InitializesMoleculeBlock (0 ms) 33: [ RUN ] IndexMapTest.MapsSingleBlock -33: [ OK ] IndexMapTest.MapsSingleBlock (0 ms) +33: [ OK ] IndexMapTest.MapsSingleBlock (1 ms) 33: [ RUN ] IndexMapTest.MapsResidueBlocks -33: [ OK ] IndexMapTest.MapsResidueBlocks (1 ms) +33: [ OK ] IndexMapTest.MapsResidueBlocks (0 ms) 33: [ RUN ] IndexMapTest.MapsResidueBlocksWithMask 33: [ OK ] IndexMapTest.MapsResidueBlocksWithMask (0 ms) 33: [ RUN ] IndexMapTest.HandlesMultipleRequests 33: [ OK ] IndexMapTest.HandlesMultipleRequests (1 ms) -33: [----------] 11 tests from IndexMapTest (5 ms total) +33: [----------] 11 tests from IndexMapTest (3 ms total) 33: 33: [----------] 15 tests from NeighborhoodSearchTest 33: [ RUN ] NeighborhoodSearchTest.SimpleSearch -33: [ OK ] NeighborhoodSearchTest.SimpleSearch (24 ms) +33: [ OK ] NeighborhoodSearchTest.SimpleSearch (27 ms) 33: [ RUN ] NeighborhoodSearchTest.SimpleSearchXY -33: [ OK ] NeighborhoodSearchTest.SimpleSearchXY (27 ms) +33: [ OK ] NeighborhoodSearchTest.SimpleSearchXY (26 ms) 33: [ RUN ] NeighborhoodSearchTest.GridSearchBox -33: [ OK ] NeighborhoodSearchTest.GridSearchBox (5 ms) +33: [ OK ] NeighborhoodSearchTest.GridSearchBox (4 ms) 33: [ RUN ] NeighborhoodSearchTest.GridSearchTriclinic -33: [ OK ] NeighborhoodSearchTest.GridSearchTriclinic (14 ms) +33: [ OK ] NeighborhoodSearchTest.GridSearchTriclinic (13 ms) 33: [ RUN ] NeighborhoodSearchTest.GridSearch2DPBC -33: [ OK ] NeighborhoodSearchTest.GridSearch2DPBC (9 ms) +33: [ OK ] NeighborhoodSearchTest.GridSearch2DPBC (8 ms) 33: [ RUN ] NeighborhoodSearchTest.GridSearchNoPBC 33: [ OK ] NeighborhoodSearchTest.GridSearchNoPBC (4 ms) 33: [ RUN ] NeighborhoodSearchTest.GridSearchXYBox -33: [ OK ] NeighborhoodSearchTest.GridSearchXYBox (5 ms) +33: [ OK ] NeighborhoodSearchTest.GridSearchXYBox (3 ms) 33: [ RUN ] NeighborhoodSearchTest.SimpleSelfPairsSearch 33: [ OK ] NeighborhoodSearchTest.SimpleSelfPairsSearch (0 ms) 33: [ RUN ] NeighborhoodSearchTest.GridSelfPairsSearch -33: [ OK ] NeighborhoodSearchTest.GridSelfPairsSearch (74 ms) +33: [ OK ] NeighborhoodSearchTest.GridSelfPairsSearch (71 ms) 33: [ RUN ] NeighborhoodSearchTest.HandlesConcurrentSearches 33: [ OK ] NeighborhoodSearchTest.HandlesConcurrentSearches (0 ms) 33: [ RUN ] NeighborhoodSearchTest.HandlesNoPBC @@ -39329,28 +39373,28 @@ 33: [ RUN ] NeighborhoodSearchTest.HandlesSkippingPairs 33: [ OK ] NeighborhoodSearchTest.HandlesSkippingPairs (0 ms) 33: [ RUN ] NeighborhoodSearchTest.SimpleSearchExclusions -33: [ OK ] NeighborhoodSearchTest.SimpleSearchExclusions (6 ms) +33: [ OK ] NeighborhoodSearchTest.SimpleSearchExclusions (5 ms) 33: [ RUN ] NeighborhoodSearchTest.GridSearchExclusions 33: [ OK ] NeighborhoodSearchTest.GridSearchExclusions (1 ms) -33: [----------] 15 tests from NeighborhoodSearchTest (169 ms total) +33: [----------] 15 tests from NeighborhoodSearchTest (163 ms total) 33: 33: [----------] 12 tests from PositionCalculationTest 33: [ RUN ] PositionCalculationTest.ComputesAtomPositions -33: [ OK ] PositionCalculationTest.ComputesAtomPositions (1 ms) +33: [ OK ] PositionCalculationTest.ComputesAtomPositions (0 ms) 33: [ RUN ] PositionCalculationTest.ComputesResidueCOGPositions -33: [ OK ] PositionCalculationTest.ComputesResidueCOGPositions (1 ms) +33: [ OK ] PositionCalculationTest.ComputesResidueCOGPositions (0 ms) 33: [ RUN ] PositionCalculationTest.ComputesResidueCOMPositions 33: [ OK ] PositionCalculationTest.ComputesResidueCOMPositions (0 ms) 33: [ RUN ] PositionCalculationTest.ComputesGroupCOGPositions -33: [ OK ] PositionCalculationTest.ComputesGroupCOGPositions (1 ms) +33: [ OK ] PositionCalculationTest.ComputesGroupCOGPositions (0 ms) 33: [ RUN ] PositionCalculationTest.ComputesGroupCOMPositions -33: [ OK ] PositionCalculationTest.ComputesGroupCOMPositions (0 ms) +33: [ OK ] PositionCalculationTest.ComputesGroupCOMPositions (1 ms) 33: [ RUN ] PositionCalculationTest.ComputesPositionsWithCompleteWhole 33: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteWhole (0 ms) 33: [ RUN ] PositionCalculationTest.ComputesPositionsWithCompleteMax -33: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteMax (1 ms) +33: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteMax (0 ms) 33: [ RUN ] PositionCalculationTest.ComputesPositionMask -33: [ OK ] PositionCalculationTest.ComputesPositionMask (0 ms) +33: [ OK ] PositionCalculationTest.ComputesPositionMask (1 ms) 33: [ RUN ] PositionCalculationTest.HandlesFramesWithLessAtoms 33: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms (0 ms) 33: [ RUN ] PositionCalculationTest.HandlesFramesWithLessAtoms2 @@ -39359,7 +39403,7 @@ 33: [ OK ] PositionCalculationTest.HandlesIdenticalStaticCalculations (1 ms) 33: [ RUN ] PositionCalculationTest.HandlesOverlappingStaticCalculations 33: [ OK ] PositionCalculationTest.HandlesOverlappingStaticCalculations (0 ms) -33: [----------] 12 tests from PositionCalculationTest (6 ms total) +33: [----------] 12 tests from PositionCalculationTest (4 ms total) 33: 33: [----------] 30 tests from SelectionCollectionTest 33: [ RUN ] SelectionCollectionTest.HandlesNoSelections @@ -39371,11 +39415,11 @@ 33: [ RUN ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry 33: [ OK ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry (1 ms) 33: [ RUN ] SelectionCollectionTest.ParsesSelectionsFromFile -33: [ OK ] SelectionCollectionTest.ParsesSelectionsFromFile (1 ms) +33: [ OK ] SelectionCollectionTest.ParsesSelectionsFromFile (0 ms) 33: [ RUN ] SelectionCollectionTest.HandlesAtypicalWhitespace 33: [ OK ] SelectionCollectionTest.HandlesAtypicalWhitespace (0 ms) 33: [ RUN ] SelectionCollectionTest.HandlesInvalidRegularExpressions -33: [ OK ] SelectionCollectionTest.HandlesInvalidRegularExpressions (1 ms) +33: [ OK ] SelectionCollectionTest.HandlesInvalidRegularExpressions (0 ms) 33: [ RUN ] SelectionCollectionTest.HandlesUnsupportedRegularExpressions 33: [ OK ] SelectionCollectionTest.HandlesUnsupportedRegularExpressions (1 ms) 33: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue @@ -39383,17 +39427,17 @@ 33: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue2 33: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue2 (1 ms) 33: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue3 -33: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue3 (1 ms) +33: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue3 (0 ms) 33: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1 -33: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1 (0 ms) +33: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1 (1 ms) 33: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 33: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 (1 ms) 33: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 -33: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 (1 ms) +33: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 (0 ms) 33: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 -33: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 (0 ms) +33: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 (1 ms) 33: [ RUN ] SelectionCollectionTest.HandlesUnsortedGroupReference -33: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReference (2 ms) +33: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReference (1 ms) 33: [ RUN ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed 33: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed (0 ms) 33: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup @@ -39401,11 +39445,11 @@ 33: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed 33: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed (0 ms) 33: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 -33: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 (0 ms) +33: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 (1 ms) 33: [ RUN ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo -33: [ OK ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo (1 ms) +33: [ OK ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo (0 ms) 33: [ RUN ] SelectionCollectionTest.RecoversFromMissingAtomTypes -33: [ OK ] SelectionCollectionTest.RecoversFromMissingAtomTypes (1 ms) +33: [ OK ] SelectionCollectionTest.RecoversFromMissingAtomTypes (0 ms) 33: [ RUN ] SelectionCollectionTest.RecoversFromMissingPDBInfo 33: [ OK ] SelectionCollectionTest.RecoversFromMissingPDBInfo (1 ms) 33: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation @@ -39413,16 +39457,16 @@ 33: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation2 33: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation2 (1 ms) 33: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation3 -33: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation3 (0 ms) +33: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation3 (1 ms) 33: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets -33: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets (1 ms) +33: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets (0 ms) 33: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets2 33: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets2 (1 ms) 33: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 33: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 (1 ms) 33: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 -33: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 (1 ms) -33: [----------] 30 tests from SelectionCollectionTest (22 ms total) +33: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 (0 ms) +33: [----------] 30 tests from SelectionCollectionTest (18 ms total) 33: 33: [----------] 14 tests from SelectionCollectionInteractiveTest 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesBasicInput @@ -39436,7 +39480,7 @@ 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups 33: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups (1 ms) 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections -33: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections (2 ms) +33: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections (1 ms) 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus 33: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus (1 ms) 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus @@ -39444,16 +39488,16 @@ 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus 33: [ OK ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus (1 ms) 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline -33: [ OK ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline (1 ms) +33: [ OK ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline (0 ms) 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesEmptySelections 33: [ OK ] SelectionCollectionInteractiveTest.HandlesEmptySelections (1 ms) 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine -33: [ OK ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine (0 ms) +33: [ OK ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine (1 ms) 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput 33: [ OK ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput (1 ms) 33: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively -33: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively (1 ms) -33: [----------] 14 tests from SelectionCollectionInteractiveTest (13 ms total) +33: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively (0 ms) +33: [----------] 14 tests from SelectionCollectionInteractiveTest (11 ms total) 33: 33: [----------] 66 tests from SelectionCollectionDataTest 33: [ RUN ] SelectionCollectionDataTest.HandlesAllNone @@ -39471,7 +39515,7 @@ 33: [ RUN ] SelectionCollectionDataTest.HandlesPdbAtomname 33: [ OK ] SelectionCollectionDataTest.HandlesPdbAtomname (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesAtomtype -33: [ OK ] SelectionCollectionDataTest.HandlesAtomtype (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesAtomtype (0 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesChain 33: [ OK ] SelectionCollectionDataTest.HandlesChain (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesMass @@ -39487,15 +39531,15 @@ 33: [ RUN ] SelectionCollectionDataTest.HandlesBeta 33: [ OK ] SelectionCollectionDataTest.HandlesBeta (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesResname -33: [ OK ] SelectionCollectionDataTest.HandlesResname (2 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesResname (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesCoordinateKeywords 33: [ OK ] SelectionCollectionDataTest.HandlesCoordinateKeywords (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesSameResidue -33: [ OK ] SelectionCollectionDataTest.HandlesSameResidue (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesSameResidue (0 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesSameResidueName 33: [ OK ] SelectionCollectionDataTest.HandlesSameResidueName (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesPositionKeywords -33: [ OK ] SelectionCollectionDataTest.HandlesPositionKeywords (2 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesPositionKeywords (3 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesDistanceKeyword 33: [ OK ] SelectionCollectionDataTest.HandlesDistanceKeyword (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesMinDistanceKeyword @@ -39505,7 +39549,7 @@ 33: [ RUN ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword 33: [ OK ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword (6 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesPermuteModifier -33: [ OK ] SelectionCollectionDataTest.HandlesPermuteModifier (4 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesPermuteModifier (3 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesPlusModifier 33: [ OK ] SelectionCollectionDataTest.HandlesPlusModifier (3 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesMergeModifier @@ -39513,19 +39557,19 @@ 33: [ RUN ] SelectionCollectionDataTest.ComputesMassesAndCharges 33: [ OK ] SelectionCollectionDataTest.ComputesMassesAndCharges (2 ms) 33: [ RUN ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology -33: [ OK ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology (1 ms) +33: [ OK ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology (2 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets -33: [ OK ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets (2 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesSelectionNames 33: [ OK ] SelectionCollectionDataTest.HandlesSelectionNames (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections 33: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections (2 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed -33: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed (2 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections -33: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections (2 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections (3 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed -33: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed (2 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositions 33: [ OK ] SelectionCollectionDataTest.HandlesConstantPositions (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers @@ -39533,13 +39577,13 @@ 33: [ RUN ] SelectionCollectionDataTest.HandlesWithinConstantPositions 33: [ OK ] SelectionCollectionDataTest.HandlesWithinConstantPositions (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges -33: [ OK ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges (0 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesOverlappingRealRanges 33: [ OK ] SelectionCollectionDataTest.HandlesOverlappingRealRanges (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode 33: [ OK ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesWildcardMatching -33: [ OK ] SelectionCollectionDataTest.HandlesWildcardMatching (2 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesWildcardMatching (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesRegexMatching 33: [ OK ] SelectionCollectionDataTest.HandlesRegexMatching (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesBasicBoolean @@ -39551,33 +39595,33 @@ 33: [ RUN ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame 33: [ OK ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords -33: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords (2 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods -33: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods (2 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesKeywordOfPositions 33: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositions (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic -33: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic (2 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesNumericComparisons 33: [ OK ] SelectionCollectionDataTest.HandlesNumericComparisons (2 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesArithmeticExpressions -33: [ OK ] SelectionCollectionDataTest.HandlesArithmeticExpressions (3 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesArithmeticExpressions (2 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesNumericVariables -33: [ OK ] SelectionCollectionDataTest.HandlesNumericVariables (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesNumericVariables (2 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesComplexNumericVariables -33: [ OK ] SelectionCollectionDataTest.HandlesComplexNumericVariables (3 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesComplexNumericVariables (2 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesPositionVariables 33: [ OK ] SelectionCollectionDataTest.HandlesPositionVariables (2 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesPositionVariableInModifier -33: [ OK ] SelectionCollectionDataTest.HandlesPositionVariableInModifier (2 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesPositionVariableInModifier (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositionInVariable -33: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionInVariable (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionInVariable (2 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables 33: [ OK ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis -33: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis (1 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis (2 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables -33: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables (2 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables 33: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesUnusedVariables @@ -39585,10 +39629,10 @@ 33: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups 33: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups -33: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups (2 ms) +33: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups (1 ms) 33: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 33: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 (1 ms) -33: [----------] 66 tests from SelectionCollectionDataTest (107 ms total) +33: [----------] 66 tests from SelectionCollectionDataTest (93 ms total) 33: 33: [----------] 17 tests from SelectionOptionTest 33: [ RUN ] SelectionOptionTest.ParsesSimpleSelection @@ -39602,56 +39646,56 @@ 33: [ RUN ] SelectionOptionTest.ChecksEmptySelections 33: [ OK ] SelectionOptionTest.ChecksEmptySelections (0 ms) 33: [ RUN ] SelectionOptionTest.ChecksEmptyDelayedSelections -33: [ OK ] SelectionOptionTest.ChecksEmptyDelayedSelections (1 ms) +33: [ OK ] SelectionOptionTest.ChecksEmptyDelayedSelections (0 ms) 33: [ RUN ] SelectionOptionTest.HandlesTooManySelections -33: [ OK ] SelectionOptionTest.HandlesTooManySelections (0 ms) +33: [ OK ] SelectionOptionTest.HandlesTooManySelections (1 ms) 33: [ RUN ] SelectionOptionTest.HandlesTooFewSelections -33: [ OK ] SelectionOptionTest.HandlesTooFewSelections (1 ms) +33: [ OK ] SelectionOptionTest.HandlesTooFewSelections (0 ms) 33: [ RUN ] SelectionOptionTest.HandlesDefaultSelectionText 33: [ OK ] SelectionOptionTest.HandlesDefaultSelectionText (1 ms) 33: [ RUN ] SelectionOptionTest.HandlesAdjuster 33: [ OK ] SelectionOptionTest.HandlesAdjuster (0 ms) 33: [ RUN ] SelectionOptionTest.HandlesDynamicWhenStaticRequiredWithAdjuster -33: [ OK ] SelectionOptionTest.HandlesDynamicWhenStaticRequiredWithAdjuster (0 ms) +33: [ OK ] SelectionOptionTest.HandlesDynamicWhenStaticRequiredWithAdjuster (1 ms) 33: [ RUN ] SelectionOptionTest.HandlesTooManySelectionsWithAdjuster 33: [ OK ] SelectionOptionTest.HandlesTooManySelectionsWithAdjuster (0 ms) 33: [ RUN ] SelectionOptionTest.HandlesTooFewSelectionsWithAdjuster -33: [ OK ] SelectionOptionTest.HandlesTooFewSelectionsWithAdjuster (0 ms) +33: [ OK ] SelectionOptionTest.HandlesTooFewSelectionsWithAdjuster (1 ms) 33: [ RUN ] SelectionOptionTest.HandlesDelayedRequiredSelection -33: [ OK ] SelectionOptionTest.HandlesDelayedRequiredSelection (1 ms) +33: [ OK ] SelectionOptionTest.HandlesDelayedRequiredSelection (0 ms) 33: [ RUN ] SelectionOptionTest.HandlesTooFewDelayedRequiredSelections 33: [ OK ] SelectionOptionTest.HandlesTooFewDelayedRequiredSelections (0 ms) 33: [ RUN ] SelectionOptionTest.HandlesDelayedOptionalSelection 33: [ OK ] SelectionOptionTest.HandlesDelayedOptionalSelection (1 ms) 33: [ RUN ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster 33: [ OK ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster (0 ms) -33: [----------] 17 tests from SelectionOptionTest (9 ms total) +33: [----------] 17 tests from SelectionOptionTest (8 ms total) 33: 33: [----------] 9 tests from SelectionFileOptionTest 33: [ RUN ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile -33: [ OK ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile (1 ms) +33: [ OK ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile (0 ms) 33: [ RUN ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions 33: [ OK ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions (1 ms) 33: [ RUN ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile -33: [ OK ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile (0 ms) +33: [ OK ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile (1 ms) 33: [ RUN ] SelectionFileOptionTest.HandlesRequiredOptionFromFile -33: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFile (1 ms) +33: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFile (0 ms) 33: [ RUN ] SelectionFileOptionTest.HandlesRequiredOptionFromFileWithOtherOptionSet -33: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFileWithOtherOptionSet (0 ms) +33: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFileWithOtherOptionSet (1 ms) 33: [ RUN ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile -33: [ OK ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile (1 ms) +33: [ OK ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile (0 ms) 33: [ RUN ] SelectionFileOptionTest.GivesErrorWithNoFile -33: [ OK ] SelectionFileOptionTest.GivesErrorWithNoFile (0 ms) +33: [ OK ] SelectionFileOptionTest.GivesErrorWithNoFile (1 ms) 33: [ RUN ] SelectionFileOptionTest.GivesErrorWithNonExistentFile -33: [ OK ] SelectionFileOptionTest.GivesErrorWithNonExistentFile (1 ms) +33: [ OK ] SelectionFileOptionTest.GivesErrorWithNonExistentFile (0 ms) 33: [ RUN ] SelectionFileOptionTest.GivesErrorWithMultipleFiles 33: [ OK ] SelectionFileOptionTest.GivesErrorWithMultipleFiles (1 ms) -33: [----------] 9 tests from SelectionFileOptionTest (6 ms total) +33: [----------] 9 tests from SelectionFileOptionTest (5 ms total) 33: 33: [----------] Global test environment tear-down -33: [==========] 190 tests from 10 test cases ran. (340 ms total) +33: [==========] 190 tests from 10 test cases ran. (308 ms total) 33: [ PASSED ] 190 tests. -33/40 Test #33: SelectionUnitTests ............... Passed 0.37 sec +33/40 Test #33: SelectionUnitTests ............... Passed 0.34 sec test 34 Start 34: TrajectoryAnalysisUnitTests @@ -39668,7 +39712,7 @@ 34: Total number of atoms in clusters = 24 34: cmid: 2, cmax: 4, max_size: 6 34: 16% 33% 50% 66% 83%100%cmid: 6, cmax: 18, max_size: 6 -34: 16% 33% 50% 66% 83%100%[ OK ] ClustsizeTest.NoMolDefaultCutoff (4 ms) +34: 16% 33% 50% 66% 83%100%[ OK ] ClustsizeTest.NoMolDefaultCutoff (3 ms) 34: [ RUN ] ClustsizeTest.NoMolShortCutoff 34: Reading frames from pdb file Reading frame 0 time 0.000 Group 0 ( SOL) has 24 elements 34: There is one group in the index @@ -39677,7 +39721,7 @@ 34: Total number of atoms in clusters = 24 34: cmid: 1, cmax: 6, max_size: 6 34: 16% 33% 50% 66% 83%100%cmid: 6, cmax: 18, max_size: 6 -34: 16% 33% 50% 66% 83%100%[ OK ] ClustsizeTest.NoMolShortCutoff (3 ms) +34: 16% 33% 50% 66% 83%100%[ OK ] ClustsizeTest.NoMolShortCutoff (7 ms) 34: [ RUN ] ClustsizeTest.MolDefaultCutoff 34: Reading frames from pdb file Reading frame 0 time 0.000 Reading file /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 34: Reading file /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) @@ -39695,7 +39739,7 @@ 34: Total number of atoms in clusters = 8 34: cmid: 1, cmax: 6, max_size: 2 34: 50%100%cmid: 2, cmax: 6, max_size: 2 -34: 50%100%[ OK ] ClustsizeTest.MolShortCutoff (4 ms) +34: 50%100%[ OK ] ClustsizeTest.MolShortCutoff (3 ms) 34: [ RUN ] ClustsizeTest.MolCSize 34: Reading frames from pdb file Reading frame 0 time 0.000 Reading file /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 34: Reading file /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) @@ -39704,8 +39748,8 @@ 34: Total number of atoms in clusters = 8 34: cmid: 2, cmax: 4, max_size: 2 34: 50%100%cmid: 2, cmax: 6, max_size: 2 -34: 50%100%[ OK ] ClustsizeTest.MolCSize (4 ms) -34: [----------] 5 tests from ClustsizeTest (18 ms total) +34: 50%100%[ OK ] ClustsizeTest.MolCSize (3 ms) +34: [----------] 5 tests from ClustsizeTest (20 ms total) 34: 34: [----------] 4 tests from TrajectoryAnalysisCommandLineRunnerTest 34: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.WritesHelp @@ -39745,7 +39789,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.DetectsIncorrectTrajectorySubset (6 ms) +34: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.DetectsIncorrectTrajectorySubset (5 ms) 34: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.FailsWithTrajectorySubsetWithoutTrajectory 34: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.FailsWithTrajectorySubsetWithoutTrajectory (1 ms) 34: [----------] 4 tests from TrajectoryAnalysisCommandLineRunnerTest (13 ms total) @@ -39767,7 +39811,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] AngleModuleTest.ComputesSimpleAngles (6 ms) +34: [ OK ] AngleModuleTest.ComputesSimpleAngles (5 ms) 34: [ RUN ] AngleModuleTest.ComputesDihedrals 34: 34: WARNING: If there are molecules in the input trajectory file @@ -39818,7 +39862,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] AngleModuleTest.ComputesVectorPlanePairAngles (7 ms) +34: [ OK ] AngleModuleTest.ComputesVectorPlanePairAngles (6 ms) 34: [ RUN ] AngleModuleTest.ComputesPlaneZAxisAngles 34: 34: WARNING: If there are molecules in the input trajectory file @@ -39852,7 +39896,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] AngleModuleTest.ComputesVectorSphereNormalZAxisAngles (7 ms) +34: [ OK ] AngleModuleTest.ComputesVectorSphereNormalZAxisAngles (5 ms) 34: [ RUN ] AngleModuleTest.ComputesVectorTimeZeroAngles 34: Reading frames from gro file 'Test system for different angles', 33 atoms. 34: Reading frame 0 time 0.000 @@ -39871,7 +39915,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] AngleModuleTest.ComputesVectorTimeZeroAngles (6 ms) +34: [ OK ] AngleModuleTest.ComputesVectorTimeZeroAngles (7 ms) 34: [ RUN ] AngleModuleTest.ComputesMultipleAngles 34: 34: WARNING: If there are molecules in the input trajectory file @@ -39888,7 +39932,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] AngleModuleTest.ComputesMultipleAngles (6 ms) +34: [ OK ] AngleModuleTest.ComputesMultipleAngles (5 ms) 34: [ RUN ] AngleModuleTest.HandlesDynamicSelections 34: 34: WARNING: If there are molecules in the input trajectory file @@ -39939,8 +39983,8 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorGroupsAngles (7 ms) -34: [----------] 11 tests from AngleModuleTest (69 ms total) +34: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorGroupsAngles (6 ms) +34: [----------] 11 tests from AngleModuleTest (63 ms total) 34: 34: [----------] 3 tests from DistanceModuleTest 34: [ RUN ] DistanceModuleTest.ComputesDistances @@ -39988,7 +40032,7 @@ 34: Number of samples: 4 34: Average distance: 1.81066 nm 34: Standard deviation: 0.79289 nm -34: [ OK ] DistanceModuleTest.ComputesMultipleDistances (8 ms) +34: [ OK ] DistanceModuleTest.ComputesMultipleDistances (7 ms) 34: [ RUN ] DistanceModuleTest.HandlesDynamicSelections 34: 34: WARNING: If there are molecules in the input trajectory file @@ -40009,8 +40053,8 @@ 34: Number of samples: 3 34: Average distance: 1.72076 nm 34: Standard deviation: 1.24839 nm -34: [ OK ] DistanceModuleTest.HandlesDynamicSelections (8 ms) -34: [----------] 3 tests from DistanceModuleTest (23 ms total) +34: [ OK ] DistanceModuleTest.HandlesDynamicSelections (7 ms) +34: [----------] 3 tests from DistanceModuleTest (22 ms total) 34: 34: [----------] 2 tests from FreeVolumeModuleTest 34: [ RUN ] FreeVolumeModuleTest.ComputesFreeVolume @@ -40074,7 +40118,7 @@ 34: Molecular volume Vm assuming homogeneity: 0.2027 +/- 0.0000 nm^3 34: Molecular van der Waals volume assuming homogeneity: 0.1256 +/- 0.0000 nm^3 34: Fractional free volume 0.194 +/- 0.000 -34: [ OK ] FreeVolumeModuleTest.ComputesFreeVolume (215 ms) +34: [ OK ] FreeVolumeModuleTest.ComputesFreeVolume (207 ms) 34: [ RUN ] FreeVolumeModuleTest.ComputesFreeVolumeSelection 34: Reading file /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) 34: Reading file /build/gromacs-2019.1/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) @@ -40126,8 +40170,8 @@ 34: Molecular volume Vm assuming homogeneity: 0.2027 +/- 0.0000 nm^3 34: Molecular van der Waals volume assuming homogeneity: 0.1247 +/- 0.0000 nm^3 34: Fractional free volume 0.200 +/- 0.000 -34: [ OK ] FreeVolumeModuleTest.ComputesFreeVolumeSelection (212 ms) -34: [----------] 2 tests from FreeVolumeModuleTest (427 ms total) +34: [ OK ] FreeVolumeModuleTest.ComputesFreeVolumeSelection (205 ms) +34: [----------] 2 tests from FreeVolumeModuleTest (412 ms total) 34: 34: [----------] 7 tests from PairDistanceModuleTest 34: [ RUN ] PairDistanceModuleTest.ComputesAllDistances @@ -40180,7 +40224,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] PairDistanceModuleTest.ComputesMinDistanceWithCutoff (6 ms) +34: [ OK ] PairDistanceModuleTest.ComputesMinDistanceWithCutoff (5 ms) 34: [ RUN ] PairDistanceModuleTest.ComputesMaxDistance 34: 34: WARNING: If there are molecules in the input trajectory file @@ -40214,7 +40258,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] PairDistanceModuleTest.ComputesMaxDistanceWithCutoff (6 ms) +34: [ OK ] PairDistanceModuleTest.ComputesMaxDistanceWithCutoff (5 ms) 34: [ RUN ] PairDistanceModuleTest.ComputesGroupedMinDistanceWithCutoff 34: 34: WARNING: If there are molecules in the input trajectory file @@ -40231,7 +40275,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] PairDistanceModuleTest.ComputesGroupedMinDistanceWithCutoff (6 ms) +34: [ OK ] PairDistanceModuleTest.ComputesGroupedMinDistanceWithCutoff (5 ms) 34: [ RUN ] PairDistanceModuleTest.ComputesGroupedMaxDistanceWithCutoff 34: 34: WARNING: If there are molecules in the input trajectory file @@ -40248,8 +40292,8 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] PairDistanceModuleTest.ComputesGroupedMaxDistanceWithCutoff (6 ms) -34: [----------] 7 tests from PairDistanceModuleTest (42 ms total) +34: [ OK ] PairDistanceModuleTest.ComputesGroupedMaxDistanceWithCutoff (5 ms) +34: [----------] 7 tests from PairDistanceModuleTest (39 ms total) 34: 34: [----------] 5 tests from RdfModuleTest 34: [ RUN ] RdfModuleTest.BasicTest @@ -40268,12 +40312,12 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] RdfModuleTest.BasicTest (43 ms) +34: [ OK ] RdfModuleTest.BasicTest (40 ms) 34: [ RUN ] RdfModuleTest.SelectionsSolelyFromIndexFileWork 34: Reading frames from gro file '216H2O,WATJP01,SPC216,SPC-MODEL,300K,BOX(M)=1.86206NM,WFVG,MAR. 1984', 648 atoms. 34: Reading frame 0 time 0.000 Last frame 0 time 0.000 34: Analyzed 1 frames, last time 0.000 -34: [ OK ] RdfModuleTest.SelectionsSolelyFromIndexFileWork (32 ms) +34: [ OK ] RdfModuleTest.SelectionsSolelyFromIndexFileWork (30 ms) 34: [ RUN ] RdfModuleTest.SelectionsFromBothTopologyFileAndIndexFileWork 34: 34: WARNING: If there are molecules in the input trajectory file @@ -40290,7 +40334,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] RdfModuleTest.SelectionsFromBothTopologyFileAndIndexFileWork (42 ms) +34: [ OK ] RdfModuleTest.SelectionsFromBothTopologyFileAndIndexFileWork (40 ms) 34: [ RUN ] RdfModuleTest.CalculatesSurf 34: 34: WARNING: If there are molecules in the input trajectory file @@ -40324,8 +40368,8 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] RdfModuleTest.CalculatesXY (50 ms) -34: [----------] 5 tests from RdfModuleTest (190 ms total) +34: [ OK ] RdfModuleTest.CalculatesXY (46 ms) +34: [----------] 5 tests from RdfModuleTest (178 ms total) 34: 34: [----------] 5 tests from SasaModuleTest 34: [ RUN ] SasaModuleTest.BasicTest @@ -40372,7 +40416,7 @@ 34: you providing a run input file. 34: 34: Analyzed topology coordinates -34: [ OK ] SasaModuleTest.BasicTest (22 ms) +34: [ OK ] SasaModuleTest.BasicTest (20 ms) 34: [ RUN ] SasaModuleTest.HandlesSelectedResidues 34: 34: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ @@ -40507,7 +40551,7 @@ 34: you providing a run input file. 34: 34: Analyzed topology coordinates -34: [ OK ] SasaModuleTest.HandlesDynamicOutputGroup (16 ms) +34: [ OK ] SasaModuleTest.HandlesDynamicOutputGroup (15 ms) 34: [ RUN ] SasaModuleTest.HandlesDynamicCalculationGroup 34: 34: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ @@ -40552,8 +40596,8 @@ 34: you providing a run input file. 34: 34: Analyzed topology coordinates -34: [ OK ] SasaModuleTest.HandlesDynamicCalculationGroup (15 ms) -34: [----------] 5 tests from SasaModuleTest (81 ms total) +34: [ OK ] SasaModuleTest.HandlesDynamicCalculationGroup (14 ms) +34: [----------] 5 tests from SasaModuleTest (78 ms total) 34: 34: [----------] 8 tests from SelectModuleTest 34: [ RUN ] SelectModuleTest.BasicTest @@ -40612,7 +40656,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] SelectModuleTest.HandlesPDBOutputWithPDBInput (8 ms) +34: [ OK ] SelectModuleTest.HandlesPDBOutputWithPDBInput (7 ms) 34: [ RUN ] SelectModuleTest.HandlesMaxPDBOutput 34: Reading frames from gro file 'Test system', 15 atoms. 34: Reading frame 0 time 0.000 @@ -40631,7 +40675,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] SelectModuleTest.HandlesMaxPDBOutput (8 ms) +34: [ OK ] SelectModuleTest.HandlesMaxPDBOutput (7 ms) 34: [ RUN ] SelectModuleTest.HandlesSelectedPDBOutput 34: Reading frames from gro file 'Test system', 15 atoms. 34: Reading frame 0 time 0.000 @@ -40667,7 +40711,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] SelectModuleTest.NormalizesSizes (6 ms) +34: [ OK ] SelectModuleTest.NormalizesSizes (5 ms) 34: [ RUN ] SelectModuleTest.WritesResidueNumbers 34: 34: WARNING: If there are molecules in the input trajectory file @@ -40701,35 +40745,35 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] SelectModuleTest.WritesResidueIndices (5 ms) -34: [----------] 8 tests from SelectModuleTest (59 ms total) +34: [ OK ] SelectModuleTest.WritesResidueIndices (4 ms) +34: [----------] 8 tests from SelectModuleTest (53 ms total) 34: 34: [----------] 10 tests from SurfaceAreaTest 34: [ RUN ] SurfaceAreaTest.ComputesSinglePoint -34: [ OK ] SurfaceAreaTest.ComputesSinglePoint (0 ms) +34: [ OK ] SurfaceAreaTest.ComputesSinglePoint (1 ms) 34: [ RUN ] SurfaceAreaTest.ComputesTwoPoints 34: [ OK ] SurfaceAreaTest.ComputesTwoPoints (2 ms) 34: [ RUN ] SurfaceAreaTest.ComputesTwoPointsOfUnequalRadius 34: [ OK ] SurfaceAreaTest.ComputesTwoPointsOfUnequalRadius (2 ms) 34: [ RUN ] SurfaceAreaTest.SurfacePoints12 -34: [ OK ] SurfaceAreaTest.SurfacePoints12 (1 ms) +34: [ OK ] SurfaceAreaTest.SurfacePoints12 (0 ms) 34: [ RUN ] SurfaceAreaTest.SurfacePoints32 34: [ OK ] SurfaceAreaTest.SurfacePoints32 (0 ms) 34: [ RUN ] SurfaceAreaTest.SurfacePoints42 -34: [ OK ] SurfaceAreaTest.SurfacePoints42 (1 ms) +34: [ OK ] SurfaceAreaTest.SurfacePoints42 (0 ms) 34: [ RUN ] SurfaceAreaTest.SurfacePoints122 -34: [ OK ] SurfaceAreaTest.SurfacePoints122 (1 ms) +34: [ OK ] SurfaceAreaTest.SurfacePoints122 (2 ms) 34: [ RUN ] SurfaceAreaTest.Computes100Points 34: [ OK ] SurfaceAreaTest.Computes100Points (1 ms) 34: [ RUN ] SurfaceAreaTest.Computes100PointsWithRectangularPBC 34: [ OK ] SurfaceAreaTest.Computes100PointsWithRectangularPBC (4 ms) 34: [ RUN ] SurfaceAreaTest.Computes100PointsWithTriclinicPBC -34: [ OK ] SurfaceAreaTest.Computes100PointsWithTriclinicPBC (5 ms) -34: [----------] 10 tests from SurfaceAreaTest (18 ms total) +34: [ OK ] SurfaceAreaTest.Computes100PointsWithTriclinicPBC (4 ms) +34: [----------] 10 tests from SurfaceAreaTest (17 ms total) 34: 34: [----------] 4 tests from TopologyInformation 34: [ RUN ] TopologyInformation.CantWorkWithoutReadingAFile -34: [ OK ] TopologyInformation.CantWorkWithoutReadingAFile (1 ms) +34: [ OK ] TopologyInformation.CantWorkWithoutReadingAFile (0 ms) 34: [ RUN ] TopologyInformation.WorksWithGroFile 34: 34: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -40739,7 +40783,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] TopologyInformation.WorksWithGroFile (5 ms) +34: [ OK ] TopologyInformation.WorksWithGroFile (6 ms) 34: [ RUN ] TopologyInformation.WorksWithPdbFile 34: 34: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -40749,7 +40793,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] TopologyInformation.WorksWithPdbFile (5 ms) +34: [ OK ] TopologyInformation.WorksWithPdbFile (4 ms) 34: [ RUN ] TopologyInformation.WorksWithTprFromPdbFile 34: 34: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary/TopologyInformation_WorksWithTprFromPdbFile_lysozyme.mdp, line 1]: @@ -40763,7 +40807,7 @@ 34: For a correct single-point energy evaluation with nsteps = 0, use 34: continuation = yes to avoid constraining the input coordinates. 34: -34: Setting the LD random seed to -1859738169 +34: Setting the LD random seed to -828482030 34: Generated 330891 of the 330891 non-bonded parameter combinations 34: Generating 1-4 interactions: fudge = 0.5 34: Generated 330891 of the 330891 1-4 parameter combinations @@ -40798,8 +40842,8 @@ 34: There are: 10 Protein residues 34: Analysing Protein... 34: This run will generate roughly 0 Mb of data -34: [ OK ] TopologyInformation.WorksWithTprFromPdbFile (446 ms) -34: [----------] 4 tests from TopologyInformation (458 ms total) +34: [ OK ] TopologyInformation.WorksWithTprFromPdbFile (425 ms) +34: [----------] 4 tests from TopologyInformation (435 ms total) 34: 34: [----------] 4 tests from TrajectoryModuleTest 34: [ RUN ] TrajectoryModuleTest.BasicTest @@ -40839,7 +40883,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] TrajectoryModuleTest.PlotsXOnly (7 ms) +34: [ OK ] TrajectoryModuleTest.PlotsXOnly (6 ms) 34: [ RUN ] TrajectoryModuleTest.HandlesNoVelocities 34: Reading frames from gro file 'Test system', 15 atoms. 34: Reading frame 0 time 0.000 @@ -40858,7 +40902,7 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] TrajectoryModuleTest.HandlesNoVelocities (6 ms) +34: [ OK ] TrajectoryModuleTest.HandlesNoVelocities (5 ms) 34: [ RUN ] TrajectoryModuleTest.HandlesNoForces 34: Reading frames from gro file 'Test system', 15 atoms. 34: Reading frame 0 time 0.000 @@ -40877,14 +40921,14 @@ 34: and radius of the atom type. Please check the output 34: files if necessary. 34: -34: [ OK ] TrajectoryModuleTest.HandlesNoForces (6 ms) -34: [----------] 4 tests from TrajectoryModuleTest (25 ms total) +34: [ OK ] TrajectoryModuleTest.HandlesNoForces (5 ms) +34: [----------] 4 tests from TrajectoryModuleTest (22 ms total) 34: 34: [----------] 5 tests from UnionFinderTest 34: [ RUN ] UnionFinderTest.WorksEmpty 34: [ OK ] UnionFinderTest.WorksEmpty (0 ms) 34: [ RUN ] UnionFinderTest.BasicMerges -34: [ OK ] UnionFinderTest.BasicMerges (1 ms) +34: [ OK ] UnionFinderTest.BasicMerges (0 ms) 34: [ RUN ] UnionFinderTest.LargerMerges 34: [ OK ] UnionFinderTest.LargerMerges (0 ms) 34: [ RUN ] UnionFinderTest.LongRightMerge @@ -40899,9 +40943,9 @@ 34: [----------] 1 test from MappedUnionFinderTest (0 ms total) 34: 34: [----------] Global test environment tear-down -34: [==========] 74 tests from 14 test cases ran. (1425 ms total) +34: [==========] 74 tests from 14 test cases ran. (1353 ms total) 34: [ PASSED ] 74 tests. -34/40 Test #34: TrajectoryAnalysisUnitTests ...... Passed 1.45 sec +34/40 Test #34: TrajectoryAnalysisUnitTests ...... Passed 1.40 sec test 35 Start 35: EnergyAnalysisUnitTests @@ -40918,8 +40962,8 @@ 35: 35: 35: Wrote 8 lambda values with 101 samples as 808 dH data blocks to /build/gromacs-2019.1/build/basic-dp/src/gromacs/energyanalysis/tests/Testing/Temporary/DhdlTest_ExtractDhdl_dhdl.xvg -35: [ OK ] DhdlTest.ExtractDhdl (16 ms) -35: [----------] 1 test from DhdlTest (16 ms total) +35: [ OK ] DhdlTest.ExtractDhdl (18 ms) +35: [----------] 1 test from DhdlTest (19 ms total) 35: 35: [----------] 1 test from OriresTest 35: [ RUN ] OriresTest.ExtractOrires @@ -40930,8 +40974,8 @@ 35: End your selection with 0 35: Selecting all 7 orientation restraints 35: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.002 Reading energy frame 2 time 0.004 Reading energy frame 3 time 0.006 Reading energy frame 4 time 0.008 Reading energy frame 5 time 0.010 Reading energy frame 6 time 0.012 Reading energy frame 7 time 0.014 Reading energy frame 8 time 0.016 Reading energy frame 9 time 0.018 Reading energy frame 10 time 0.020 Last energy frame read 10 time 0.020 -35: [ OK ] OriresTest.ExtractOrires (17 ms) -35: [----------] 1 test from OriresTest (17 ms total) +35: [ OK ] OriresTest.ExtractOrires (16 ms) +35: [----------] 1 test from OriresTest (16 ms total) 35: 35: [----------] 3 tests from EnergyTest 35: [ RUN ] EnergyTest.ExtractEnergy @@ -40962,7 +41006,7 @@ 35: Potential -34142.2 39 228.993 -62.8906 (kJ/mol) 35: Kinetic En. 6132.38 0.42 119.428 -0.266996 (kJ/mol) 35: Total Energy -28009.8 39 258.637 -63.1577 (kJ/mol) -35: [ OK ] EnergyTest.ExtractEnergy (5 ms) +35: [ OK ] EnergyTest.ExtractEnergy (4 ms) 35: [ RUN ] EnergyTest.ExtractEnergyByNumber 35: Opened /build/gromacs-2019.1/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file 35: @@ -41021,8 +41065,8 @@ 35: Pressure 5.34371 4.1 605.307 -4.88771 (bar) 35: Box-Z 2.92457 0.0054 0.0151558 0.0234974 (nm) 35: Volume 25.0162 0.14 0.386769 0.598615 (nm^3) -35: [ OK ] EnergyTest.ExtractEnergyMixed (5 ms) -35: [----------] 3 tests from EnergyTest (16 ms total) +35: [ OK ] EnergyTest.ExtractEnergyMixed (4 ms) +35: [----------] 3 tests from EnergyTest (13 ms total) 35: 35: [----------] 2 tests from ViscosityTest 35: [ RUN ] ViscosityTest.EinsteinViscosity @@ -41046,7 +41090,7 @@ 35: Temperature 300.001 0.02 5.8425 -0.0130558 (K) 35: Volume 25.0162 0.14 0.386769 0.598615 (nm^3) 35: Pressure 5.34371 4.1 605.307 -4.88771 (bar) -35: [ OK ] ViscosityTest.EinsteinViscosity (66 ms) +35: [ OK ] ViscosityTest.EinsteinViscosity (95 ms) 35: [ RUN ] ViscosityTest.EinsteinViscosityIntegral 35: Opened /build/gromacs-2019.1/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file 35: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.200 Reading energy frame 2 time 0.400 Reading energy frame 3 time 0.600 Reading energy frame 4 time 0.800 Reading energy frame 5 time 1.000 Reading energy frame 6 time 1.200 Reading energy frame 7 time 1.400 Reading energy frame 8 time 1.600 Reading energy frame 9 time 1.800 Reading energy frame 10 time 2.000 Reading energy frame 11 time 2.200 Reading energy frame 12 time 2.400 Reading energy frame 13 time 2.600 Reading energy frame 14 time 2.800 Reading energy frame 15 time 3.000 Reading energy frame 16 time 3.200 Reading energy frame 17 time 3.400 Reading energy frame 18 time 3.600 Reading energy frame 19 time 3.800 Reading energy frame 20 time 4.000 Reading energy frame 30 time 6.000 Reading energy frame 40 time 8.000 Reading energy frame 50 time 10.000 Last energy frame read 50 time 10.000 @@ -41068,13 +41112,13 @@ 35: Temperature 300.001 0.02 5.8425 -0.0130558 (K) 35: Volume 25.0162 0.14 0.386769 0.598615 (nm^3) 35: Pressure 5.34371 4.1 605.307 -4.88771 (bar) -35: [ OK ] ViscosityTest.EinsteinViscosityIntegral (60 ms) -35: [----------] 2 tests from ViscosityTest (126 ms total) +35: [ OK ] ViscosityTest.EinsteinViscosityIntegral (44 ms) +35: [----------] 2 tests from ViscosityTest (140 ms total) 35: 35: [----------] Global test environment tear-down -35: [==========] 7 tests from 4 test cases ran. (175 ms total) +35: [==========] 7 tests from 4 test cases ran. (188 ms total) 35: [ PASSED ] 7 tests. -35/40 Test #35: EnergyAnalysisUnitTests .......... Passed 0.20 sec +35/40 Test #35: EnergyAnalysisUnitTests .......... Passed 0.21 sec test 36 Start 36: ToolUnitTests @@ -41084,7 +41128,7 @@ 36: [----------] Global test environment set-up. 36: [----------] 4 tests from ReportMethodsTest 36: [ RUN ] ReportMethodsTest.WritesCorrectHeadersFormated -36: [ OK ] ReportMethodsTest.WritesCorrectHeadersFormated (0 ms) +36: [ OK ] ReportMethodsTest.WritesCorrectHeadersFormated (1 ms) 36: [ RUN ] ReportMethodsTest.WritesCorrectHeadersUnformatted 36: [ OK ] ReportMethodsTest.WritesCorrectHeadersUnformatted (0 ms) 36: [ RUN ] ReportMethodsTest.WritesCorrectInformation @@ -41100,7 +41144,7 @@ 36: For a correct single-point energy evaluation with nsteps = 0, use 36: continuation = yes to avoid constraining the input coordinates. 36: -36: Setting the LD random seed to 84089614 +36: Setting the LD random seed to 1279194664 36: Generated 330891 of the 330891 non-bonded parameter combinations 36: Generating 1-4 interactions: fudge = 0.5 36: Generated 330891 of the 330891 1-4 parameter combinations @@ -41134,7 +41178,7 @@ 36: There are: 10 Protein residues 36: Analysing Protein... 36: This run will generate roughly 0 Mb of data -36: [ OK ] ReportMethodsTest.WritesCorrectInformation (471 ms) +36: [ OK ] ReportMethodsTest.WritesCorrectInformation (425 ms) 36: [ RUN ] ReportMethodsTest.ToolEndToEndTest 36: 36: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/gromacs/tools/tests/Testing/Temporary/ReportMethodsTest_ToolEndToEndTest_lysozyme.mdp, line 1]: @@ -41148,7 +41192,7 @@ 36: For a correct single-point energy evaluation with nsteps = 0, use 36: continuation = yes to avoid constraining the input coordinates. 36: -36: Setting the LD random seed to -1826422551 +36: Setting the LD random seed to -699618353 36: Generated 330891 of the 330891 non-bonded parameter combinations 36: Generating 1-4 interactions: fudge = 0.5 36: Generated 330891 of the 330891 1-4 parameter combinations @@ -41192,13 +41236,13 @@ 36: The Cut-off algorithm was used for electrostatic interactions. 36: with a cut-off of 1 nm. 36: A single cut-off of 1.1 nm was used for Van der Waals interactions. -36: [ OK ] ReportMethodsTest.ToolEndToEndTest (433 ms) -36: [----------] 4 tests from ReportMethodsTest (904 ms total) +36: [ OK ] ReportMethodsTest.ToolEndToEndTest (408 ms) +36: [----------] 4 tests from ReportMethodsTest (834 ms total) 36: 36: [----------] Global test environment tear-down -36: [==========] 4 tests from 1 test case ran. (904 ms total) +36: [==========] 4 tests from 1 test case ran. (834 ms total) 36: [ PASSED ] 4 tests. -36/40 Test #36: ToolUnitTests .................... Passed 0.93 sec +36/40 Test #36: ToolUnitTests .................... Passed 0.86 sec test 37 Start 37: MdrunTests @@ -41220,7 +41264,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to -494954693 +37: Setting the LD random seed to -957948944 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -41244,8 +41288,8 @@ 37: Set rlist, assuming 4x4 atom pair-list, to 1.056 nm, buffer size 0.056 nm 37: Note that mdrun will redetermine rlist based on the actual pair-list setup 37: This run will generate roughly 0 Mb of data -37: [ OK ] GromppTest.EmptyMdpFileWorks (41 ms) -37: [----------] 1 test from GromppTest (41 ms total) +37: [ OK ] GromppTest.EmptyMdpFileWorks (49 ms) +37: [----------] 1 test from GromppTest (49 ms total) 37: 37: [----------] 1 test from ImdTest 37: [ RUN ] ImdTest.ImdCanRun @@ -41254,7 +41298,7 @@ 37: The Berendsen thermostat does not generate the correct kinetic energy 37: distribution. You might want to consider using the V-rescale thermostat. 37: -37: Setting the LD random seed to -1830699459 +37: Setting the LD random seed to -2008841655 37: Generated 3 of the 3 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 3 of the 3 1-4 parameter combinations @@ -41286,7 +41330,7 @@ 37: IMD: Pulling from IMD remote is enabled (-imdpull). 37: IMD: Turning on IMD - port for incoming requests is 0. 37: IMD: Setting up incoming socket. -37: IMD: Listening for IMD connection on port 53053. +37: IMD: Listening for IMD connection on port 46639. 37: IMD: -imdwait not set, starting simulation. 37: starting mdrun 'spc2' 37: 2 steps, 0.0 ps. @@ -41299,15 +41343,15 @@ 37: 37: Writing final coordinates. 37: -37: NOTE: 67 % of the run time was spent in pair search, +37: NOTE: 13 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.014 0.007 197.8 +37: Time: 0.005 0.003 194.1 37: (ns/day) (hour/ns) -37: Performance: 146.661 0.164 -37: [ OK ] ImdTest.ImdCanRun (56 ms) -37: [----------] 1 test from ImdTest (56 ms total) +37: Performance: 409.170 0.059 +37: [ OK ] ImdTest.ImdCanRun (82 ms) +37: [----------] 1 test from ImdTest (82 ms total) 37: 37: [----------] 2 tests from PmeTest 37: [ RUN ] PmeTest.ReproducesEnergies @@ -41318,7 +41362,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to -118108882 +37: Setting the LD random seed to 1316107140 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -41362,9 +41406,9 @@ 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.080 0.040 199.6 +37: Time: 0.094 0.047 199.6 37: (ns/day) (hour/ns) -37: Performance: 45.308 0.530 +37: Performance: 38.382 0.625 37: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeAuto.edr as double precision energy file 37: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies.tpr, VERSION 2019.1 (double precision) 37: Can not increase nstlist because an NVE ensemble is used @@ -41381,10 +41425,13 @@ 37: 37: Writing final coordinates. 37: +37: NOTE: 14 % of the run time was spent in pair search, +37: you might want to increase nstlist (this has no effect on accuracy) +37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.079 0.040 199.6 +37: Time: 0.103 0.052 199.6 37: (ns/day) (hour/ns) -37: Performance: 45.657 0.526 +37: Performance: 35.227 0.681 37: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpu.edr as double precision energy file 37: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies.tpr, VERSION 2019.1 (double precision) 37: Can not increase nstlist because an NVE ensemble is used @@ -41401,12 +41448,15 @@ 37: 37: Writing final coordinates. 37: +37: NOTE: 11 % of the run time was spent in pair search, +37: you might want to increase nstlist (this has no effect on accuracy) +37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.080 0.040 199.6 +37: Time: 0.087 0.044 199.6 37: (ns/day) (hour/ns) -37: Performance: 45.198 0.531 +37: Performance: 41.402 0.580 37: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpuTune.edr as double precision energy file -37: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (271 ms) +37: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (330 ms) 37: [ RUN ] PmeTest.ScalesTheBox 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBox_input.mdp, line 12]: @@ -41420,7 +41470,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to -208123863 +37: Setting the LD random seed to -334581104 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -41455,10 +41505,13 @@ 37: starting mdrun 'spc-and-methanol' 37: 0 steps, 0.0 ps. 37: +37: NOTE: 40 % of the run time was spent in pair search, +37: you might want to increase nstlist (this has no effect on accuracy) +37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.019 0.009 197.0 +37: Time: 0.023 0.011 197.5 37: (ns/day) (hour/ns) -37: Performance: 9.200 2.609 +37: Performance: 7.544 3.181 37: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBox_spc-and-methanol_PmeOnCpu.edr as double precision energy file 37: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 966.269 K 37: Calculated rlist for 1x1 atom pair-list as 1.000 nm, buffer size 0.000 nm @@ -41467,8 +41520,8 @@ 37: Calculating fourier grid dimensions for X Y Z 37: Using a fourier grid of 28x28x128, spacing 0.107 0.107 0.118 37: This run will generate roughly 0 Mb of data -37: [ OK ] PmeTest.ScalesTheBox (106 ms) -37: [----------] 2 tests from PmeTest (377 ms total) +37: [ OK ] PmeTest.ScalesTheBox (103 ms) +37: [----------] 2 tests from PmeTest (433 ms total) 37: 37: [----------] 1 test from CompelTest 37: [ RUN ] CompelTest.SwapCanRun @@ -41477,7 +41530,7 @@ 37: The Berendsen thermostat does not generate the correct kinetic energy 37: distribution. You might want to consider using the V-rescale thermostat. 37: -37: Setting the LD random seed to -83091169 +37: Setting the LD random seed to -662301696 37: Generated 330891 of the 330891 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 330891 of the 330891 1-4 parameter combinations @@ -41533,13 +41586,13 @@ 37: 37: Writing final coordinates. 37: -37: NOTE: 32 % of the run time was spent in pair search, +37: NOTE: 35 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 1.678 0.839 200.0 +37: Time: 1.407 0.704 200.0 37: (ns/day) (hour/ns) -37: Performance: 1.544 15.544 +37: Performance: 1.841 13.034 37: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/CompelTest_SwapCanRun.tpr, VERSION 2019.1 (double precision) 37: Overriding nsteps with value passed on the command line: 2 steps, 0.01 ps 37: @@ -41562,15 +41615,15 @@ 37: 37: Writing final coordinates. 37: -37: NOTE: 30 % of the run time was spent in pair search, +37: NOTE: 20 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.997 0.499 199.9 +37: Time: 1.018 0.509 200.0 37: (ns/day) (hour/ns) -37: Performance: 2.599 9.233 -37: [ OK ] CompelTest.SwapCanRun (2132 ms) -37: [----------] 1 test from CompelTest (2132 ms total) +37: Performance: 2.546 9.427 +37: [ OK ] CompelTest.SwapCanRun (1968 ms) +37: [----------] 1 test from CompelTest (1969 ms total) 37: 37: [----------] 6 tests from BondedInteractionsTest 37: [ RUN ] BondedInteractionsTest.NormalBondWorks @@ -41586,7 +41639,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to -519623426 +37: Setting the LD random seed to 942828832 37: Generated 3 of the 3 non-bonded parameter combinations 37: Excluding 3 bonded neighbours molecule type 'butane' 37: Removing all charge groups because cutoff-scheme=Verlet @@ -41622,15 +41675,15 @@ 37: Reading frames from gro file 'A single butane', 4 atoms. 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: -37: NOTE: 19 % of the run time was spent in pair search, +37: NOTE: 18 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.001 0.000 188.6 +37: Time: 0.001 0.000 188.0 37: (ns/day) (hour/ns) -37: Performance: 179.134 0.134 +37: Performance: 176.688 0.136 37: This run will generate roughly 0 Mb of data -37: [ OK ] BondedInteractionsTest.NormalBondWorks (10 ms) +37: [ OK ] BondedInteractionsTest.NormalBondWorks (9 ms) 37: [ RUN ] BondedInteractionsTest.TabulatedBondWorks 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedBondWorks_input.mdp, line 1]: @@ -41644,7 +41697,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to -389951019 +37: Setting the LD random seed to 119362383 37: Generated 3 of the 3 non-bonded parameter combinations 37: Excluding 3 bonded neighbours molecule type 'butane' 37: Removing all charge groups because cutoff-scheme=Verlet @@ -41680,15 +41733,15 @@ 37: Reading frames from gro file 'A single butane', 4 atoms. 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: -37: NOTE: 17 % of the run time was spent in pair search, +37: NOTE: 18 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) 37: Time: 0.001 0.000 188.7 37: (ns/day) (hour/ns) -37: Performance: 178.253 0.135 +37: Performance: 185.840 0.129 37: This run will generate roughly 0 Mb of data -37: [ OK ] BondedInteractionsTest.TabulatedBondWorks (11 ms) +37: [ OK ] BondedInteractionsTest.TabulatedBondWorks (10 ms) 37: [ RUN ] BondedInteractionsTest.NormalAngleWorks 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalAngleWorks_input.mdp, line 1]: @@ -41702,7 +41755,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to 117451210 +37: Setting the LD random seed to -773068294 37: Generated 3 of the 3 non-bonded parameter combinations 37: Excluding 3 bonded neighbours molecule type 'butane' 37: Removing all charge groups because cutoff-scheme=Verlet @@ -41742,11 +41795,11 @@ 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.001 0.000 188.1 +37: Time: 0.001 0.000 187.9 37: (ns/day) (hour/ns) -37: Performance: 198.460 0.121 +37: Performance: 187.863 0.128 37: This run will generate roughly 0 Mb of data -37: [ OK ] BondedInteractionsTest.NormalAngleWorks (9 ms) +37: [ OK ] BondedInteractionsTest.NormalAngleWorks (10 ms) 37: [ RUN ] BondedInteractionsTest.TabulatedAngleWorks 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedAngleWorks_input.mdp, line 1]: @@ -41760,7 +41813,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to 1398619203 +37: Setting the LD random seed to 870357177 37: Generated 3 of the 3 non-bonded parameter combinations 37: Excluding 3 bonded neighbours molecule type 'butane' 37: Removing all charge groups because cutoff-scheme=Verlet @@ -41796,15 +41849,15 @@ 37: Reading frames from gro file 'A single butane', 4 atoms. 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: -37: NOTE: 18 % of the run time was spent in pair search, +37: NOTE: 17 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.001 0.000 187.6 +37: Time: 0.001 0.000 188.2 37: (ns/day) (hour/ns) -37: Performance: 208.869 0.115 +37: Performance: 173.143 0.139 37: This run will generate roughly 0 Mb of data -37: [ OK ] BondedInteractionsTest.TabulatedAngleWorks (9 ms) +37: [ OK ] BondedInteractionsTest.TabulatedAngleWorks (10 ms) 37: [ RUN ] BondedInteractionsTest.NormalDihedralWorks 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalDihedralWorks_input.mdp, line 1]: @@ -41818,7 +41871,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to -1268669887 +37: Setting the LD random seed to 595962818 37: Generated 3 of the 3 non-bonded parameter combinations 37: Excluding 3 bonded neighbours molecule type 'butane' 37: Removing all charge groups because cutoff-scheme=Verlet @@ -41845,13 +41898,13 @@ 37: Reading frames from gro file 'A single butane', 4 atoms. 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: -37: NOTE: 25 % of the run time was spent in pair search, +37: NOTE: 24 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.001 0.000 189.8 +37: Time: 0.001 0.001 189.2 37: (ns/day) (hour/ns) -37: Performance: 186.126 0.129 +37: Performance: 164.199 0.146 37: This run will generate roughly 0 Mb of data 37: [ OK ] BondedInteractionsTest.NormalDihedralWorks (9 ms) 37: [ RUN ] BondedInteractionsTest.TabulatedDihedralWorks @@ -41867,7 +41920,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to -1672942506 +37: Setting the LD random seed to -1661982519 37: Generated 3 of the 3 non-bonded parameter combinations 37: Excluding 3 bonded neighbours molecule type 'butane' 37: Removing all charge groups because cutoff-scheme=Verlet @@ -41894,16 +41947,16 @@ 37: Reading frames from gro file 'A single butane', 4 atoms. 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: -37: NOTE: 25 % of the run time was spent in pair search, +37: NOTE: 23 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.001 0.001 190.0 +37: Time: 0.001 0.001 189.6 37: (ns/day) (hour/ns) -37: Performance: 152.842 0.157 +37: Performance: 159.783 0.150 37: This run will generate roughly 0 Mb of data 37: [ OK ] BondedInteractionsTest.TabulatedDihedralWorks (12 ms) -37: [----------] 6 tests from BondedInteractionsTest (60 ms total) +37: [----------] 6 tests from BondedInteractionsTest (61 ms total) 37: 37: [----------] 2 tests from MdrunTerminationTest 37: [ RUN ] MdrunTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts @@ -41914,7 +41967,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to 1236193846 +37: Setting the LD random seed to -882349292 37: Generated 3 of the 3 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 3 of the 3 1-4 parameter combinations @@ -41943,20 +41996,17 @@ 37: starting mdrun 'spc2' 37: 100 steps, 0.1 ps. 37: -37: Step 0: Run time exceeded 0.000 hours, will terminate the run within 2 steps +37: Step 1: Run time exceeded 0.000 hours, will terminate the run within 2 steps 37: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 37: Calculated rlist for 1x1 atom pair-list as 1.026 nm, buffer size 0.026 nm 37: Set rlist, assuming 4x4 atom pair-list, to 1.024 nm, buffer size 0.024 nm 37: Note that mdrun will redetermine rlist based on the actual pair-list setup 37: This run will generate roughly 0 Mb of data 37: -37: NOTE: 70 % of the run time was spent in pair search, -37: you might want to increase nstlist (this has no effect on accuracy) -37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.010 0.005 196.6 +37: Time: 0.003 0.002 190.8 37: (ns/day) (hour/ns) -37: Performance: 34.843 0.689 +37: Performance: 152.906 0.157 37: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts.tpr, VERSION 2019.1 (double precision) 37: Overriding nsteps with value passed on the command line: 2 steps, 0.002 ps 37: Changing nstlist from 10 to 80, rlist from 1.025 to 1.254 @@ -41971,15 +42021,15 @@ 37: This can lead to significant performance degradation. 37: Consider using -pin on (and -pinoffset in case you run multiple jobs). 37: starting mdrun 'spc2' -37: 3 steps, 0.0 ps (continuing from step 1, 0.0 ps). +37: 4 steps, 0.0 ps (continuing from step 2, 0.0 ps). 37: 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.003 0.001 190.7 +37: Time: 0.003 0.001 189.6 37: (ns/day) (hour/ns) -37: Performance: 181.103 0.133 -37: [ OK ] MdrunTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts (19 ms) +37: Performance: 182.839 0.131 +37: [ OK ] MdrunTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts (16 ms) 37: [ RUN ] MdrunTerminationTest.CheckpointRestartWorksWithNoAppend 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksWithNoAppend_input.mdp, line 6]: @@ -41988,7 +42038,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to -1966764096 +37: Setting the LD random seed to -1367308685 37: Generated 3 of the 3 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 3 of the 3 1-4 parameter combinations @@ -42024,13 +42074,10 @@ 37: Note that mdrun will redetermine rlist based on the actual pair-list setup 37: This run will generate roughly 0 Mb of data 37: -37: NOTE: 13 % of the run time was spent in pair search, -37: you might want to increase nstlist (this has no effect on accuracy) -37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.003 0.002 190.1 +37: Time: 0.003 0.002 189.8 37: (ns/day) (hour/ns) -37: Performance: 167.179 0.144 +37: Performance: 170.348 0.141 37: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksWithNoAppend.tpr, VERSION 2019.1 (double precision) 37: Overriding nsteps with value passed on the command line: 2 steps, 0.002 ps 37: Changing nstlist from 10 to 80, rlist from 1.025 to 1.254 @@ -42053,9 +42100,9 @@ 37: Core t (s) Wall t (s) (%) 37: Time: 0.003 0.001 195.5 37: (ns/day) (hour/ns) -37: Performance: 187.604 0.128 -37: [ OK ] MdrunTerminationTest.CheckpointRestartWorksWithNoAppend (21 ms) -37: [----------] 2 tests from MdrunTerminationTest (40 ms total) +37: Performance: 184.203 0.130 +37: [ OK ] MdrunTerminationTest.CheckpointRestartWorksWithNoAppend (17 ms) +37: [----------] 2 tests from MdrunTerminationTest (34 ms total) 37: 37: [----------] 4 tests from MimicTest 37: [ RUN ] MimicTest.OneQuantumMol @@ -42071,7 +42118,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to -504874290 +37: Setting the LD random seed to -1088990596 37: Generated 10 of the 10 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 10 of the 10 1-4 parameter combinations @@ -42106,16 +42153,16 @@ 37: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: -37: NOTE: 20 % of the run time was spent in pair search, +37: NOTE: 16 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.001 0.001 191.9 +37: Time: 0.001 0.001 188.5 37: (ns/day) (hour/ns) -37: Performance: 125.785 0.191 +37: Performance: 146.183 0.164 37: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_OneQuantumMol.edr as double precision energy file 37: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -37: [ OK ] MimicTest.OneQuantumMol (11 ms) +37: [ OK ] MimicTest.OneQuantumMol (10 ms) 37: [ RUN ] MimicTest.AllQuantumMol 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_AllQuantumMol_input.mdp, line 3]: @@ -42129,7 +42176,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to 1587375609 +37: Setting the LD random seed to 427812711 37: Generated 10 of the 10 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 10 of the 10 1-4 parameter combinations @@ -42164,16 +42211,16 @@ 37: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: -37: NOTE: 89 % of the run time was spent in pair search, +37: NOTE: 22 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.010 0.005 198.4 +37: Time: 0.001 0.001 190.4 37: (ns/day) (hour/ns) -37: Performance: 16.333 1.469 +37: Performance: 137.581 0.174 37: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_AllQuantumMol.edr as double precision energy file 37: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -37: [ OK ] MimicTest.AllQuantumMol (15 ms) +37: [ OK ] MimicTest.AllQuantumMol (11 ms) 37: [ RUN ] MimicTest.TwoQuantumMol 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_TwoQuantumMol_input.mdp, line 3]: @@ -42187,7 +42234,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to -1738361094 +37: Setting the LD random seed to -1901165428 37: Generated 10 of the 10 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 10 of the 10 1-4 parameter combinations @@ -42222,13 +42269,13 @@ 37: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: -37: NOTE: 38 % of the run time was spent in pair search, +37: NOTE: 22 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.002 0.001 192.6 +37: Time: 0.001 0.001 190.2 37: (ns/day) (hour/ns) -37: Performance: 105.776 0.227 +37: Performance: 142.560 0.168 37: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_TwoQuantumMol.edr as double precision energy file 37: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data 37: [ OK ] MimicTest.TwoQuantumMol (10 ms) @@ -42245,7 +42292,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to -240714354 +37: Setting the LD random seed to 920016408 37: Generated 2211 of the 2211 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 2211 of the 2211 1-4 parameter combinations @@ -42280,25 +42327,25 @@ 37: Reading frames from gro file 'Alanine dipeptide in water', 23 atoms. 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: -37: NOTE: 36 % of the run time was spent in pair search, +37: NOTE: 28 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.002 0.001 190.0 +37: Time: 0.002 0.001 193.8 37: (ns/day) (hour/ns) -37: Performance: 67.559 0.355 +37: Performance: 89.039 0.270 37: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_BondCuts.edr as double precision energy file 37: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 300.368 K 37: Calculated rlist for 1x1 atom pair-list as 1.034 nm, buffer size 0.034 nm 37: Set rlist, assuming 4x4 atom pair-list, to 1.025 nm, buffer size 0.025 nm 37: Note that mdrun will redetermine rlist based on the actual pair-list setup 37: This run will generate roughly 0 Mb of data -37: [ OK ] MimicTest.BondCuts (29 ms) -37: [----------] 4 tests from MimicTest (65 ms total) +37: [ OK ] MimicTest.BondCuts (26 ms) +37: [----------] 4 tests from MimicTest (57 ms total) 37: 37: [----------] 3 tests from WithDifferentOutputGroupSettings/MdrunCompressedXOutput 37: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/0 -37: Setting the LD random seed to -718829938 +37: Setting the LD random seed to 67917077 37: Generated 3 of the 3 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 3 of the 3 1-4 parameter combinations @@ -42338,13 +42385,13 @@ 37: 37: Writing final coordinates. 37: -37: NOTE: 77 % of the run time was spent in pair search, +37: NOTE: 21 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.016 0.008 197.8 +37: Time: 0.004 0.002 192.7 37: (ns/day) (hour/ns) -37: Performance: 21.668 1.108 +37: Performance: 81.509 0.294 37: Reading frame 0 time 0.000 37: # Atoms 6 37: Reading frame 1 time 0.001 Last frame 1 time 0.001 @@ -42359,9 +42406,9 @@ 37: Forces 0 37: Box 2 0.001 37: Checking file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0.xtc -37: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/0 (18 ms) +37: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/0 (12 ms) 37: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/1 -37: Setting the LD random seed to -2146188969 +37: Setting the LD random seed to -533523303 37: Generated 3 of the 3 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 3 of the 3 1-4 parameter combinations @@ -42402,9 +42449,9 @@ 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.003 0.002 190.4 +37: Time: 0.003 0.002 190.9 37: (ns/day) (hour/ns) -37: Performance: 107.390 0.223 +37: Performance: 102.630 0.234 37: Reading frame 0 time 0.000 37: # Atoms 6 37: Reading frame 1 time 0.001 Last frame 1 time 0.001 @@ -42421,7 +42468,7 @@ 37: Checking file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1.xtc 37: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/1 (12 ms) 37: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/2 -37: Setting the LD random seed to 936653933 +37: Setting the LD random seed to -1493416595 37: Generated 3 of the 3 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 3 of the 3 1-4 parameter combinations @@ -42462,9 +42509,9 @@ 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.003 0.002 190.8 +37: Time: 0.003 0.002 171.2 37: (ns/day) (hour/ns) -37: Performance: 109.087 0.220 +37: Performance: 92.623 0.259 37: Reading frame 0 time 0.000 37: # Atoms 3 37: Reading frame 1 time 0.001 Last frame 1 time 0.001 @@ -42479,8 +42526,8 @@ 37: Forces 0 37: Box 2 0.001 37: Checking file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2.xtc -37: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/2 (11 ms) -37: [----------] 3 tests from WithDifferentOutputGroupSettings/MdrunCompressedXOutput (41 ms total) +37: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/2 (12 ms) +37: [----------] 3 tests from WithDifferentOutputGroupSettings/MdrunCompressedXOutput (36 ms total) 37: 37: [----------] 3 tests from Checking/InitialConstraintsTest 37: [ RUN ] Checking/InitialConstraintsTest.Works/0 @@ -42491,7 +42538,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to -179797784 +37: Setting the LD random seed to 198719971 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -42532,15 +42579,15 @@ 37: 37: Writing final coordinates. 37: -37: NOTE: 18 % of the run time was spent in pair search, +37: NOTE: 69 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.004 0.002 191.6 +37: Time: 0.011 0.006 197.0 37: (ns/day) (hour/ns) -37: Performance: 86.221 0.278 +37: Performance: 30.917 0.776 37: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0_spc-and-methanol.edr as double precision energy file -37: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/0 (58 ms) +37: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/0 (50 ms) 37: [ RUN ] Checking/InitialConstraintsTest.Works/1 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_input.mdp, line 13]: @@ -42549,7 +42596,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to 406458005 +37: Setting the LD random seed to 517479495 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -42594,9 +42641,9 @@ 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.004 0.002 191.9 +37: Time: 0.004 0.002 192.6 37: (ns/day) (hour/ns) -37: Performance: 85.489 0.281 +37: Performance: 77.858 0.308 37: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_spc-and-methanol.edr as double precision energy file 37: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/1 (50 ms) 37: [ RUN ] Checking/InitialConstraintsTest.Works/2 @@ -42612,7 +42659,7 @@ 37: Integrator method md-vv-avek is implemented primarily for validation 37: purposes; for molecular dynamics, you should probably be using md or md-vv 37: -37: Setting the LD random seed to -768727508 +37: Setting the LD random seed to 976572634 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -42653,16 +42700,16 @@ 37: 37: Writing final coordinates. 37: -37: NOTE: 18 % of the run time was spent in pair search, +37: NOTE: 24 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.004 0.002 191.6 +37: Time: 0.004 0.002 192.3 37: (ns/day) (hour/ns) -37: Performance: 86.737 0.277 +37: Performance: 75.956 0.316 37: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_spc-and-methanol.edr as double precision energy file -37: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/2 (53 ms) -37: [----------] 3 tests from Checking/InitialConstraintsTest (161 ms total) +37: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/2 (50 ms) +37: [----------] 3 tests from Checking/InitialConstraintsTest (150 ms total) 37: 37: [----------] 3 tests from MdrunCanWrite/Trajectories 37: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/0 @@ -42673,7 +42720,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to 2135068374 +37: Setting the LD random seed to -560016656 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -42712,10 +42759,10 @@ 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.010 0.005 196.6 +37: Time: 0.011 0.006 196.5 37: (ns/day) (hour/ns) -37: Performance: 113.810 0.211 -37: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/0 (60 ms) +37: Performance: 107.506 0.223 +37: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/0 (61 ms) 37: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/1 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_1_input.mdp, line 12]: @@ -42724,7 +42771,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to 2086883193 +37: Setting the LD random seed to 1756093549 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -42759,11 +42806,14 @@ 37: 37: Writing final coordinates. 37: +37: NOTE: 49 % of the run time was spent in pair search, +37: you might want to increase nstlist (this has no effect on accuracy) +37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.010 0.005 196.2 +37: Time: 0.019 0.010 198.0 37: (ns/day) (hour/ns) -37: Performance: 123.561 0.194 -37: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/1 (53 ms) +37: Performance: 63.491 0.378 +37: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/1 (56 ms) 37: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/2 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_2_input.mdp, line 12]: @@ -42772,7 +42822,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to -1733254816 +37: Setting the LD random seed to -977280512 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -42808,11 +42858,11 @@ 37: Writing final coordinates. 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.010 0.005 196.4 +37: Time: 0.010 0.005 196.2 37: (ns/day) (hour/ns) -37: Performance: 124.489 0.193 -37: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/2 (58 ms) -37: [----------] 3 tests from MdrunCanWrite/Trajectories (171 ms total) +37: Performance: 119.352 0.201 +37: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/2 (62 ms) +37: [----------] 3 tests from MdrunCanWrite/Trajectories (180 ms total) 37: 37: [----------] 3 tests from MdrunCanWrite/NptTrajectories 37: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/0 @@ -42823,7 +42873,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to -550651902 +37: Setting the LD random seed to -1804964222 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -42858,14 +42908,14 @@ 37: 37: Writing final coordinates. 37: -37: NOTE: 13 % of the run time was spent in pair search, +37: NOTE: 15 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.006 0.003 193.7 +37: Time: 0.006 0.003 193.9 37: (ns/day) (hour/ns) -37: Performance: 90.794 0.264 -37: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/0 (54 ms) +37: Performance: 86.848 0.276 +37: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/0 (50 ms) 37: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/1 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_1_input.mdp, line 13]: @@ -42874,7 +42924,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to 608191822 +37: Setting the LD random seed to -2065415617 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -42909,14 +42959,11 @@ 37: 37: Writing final coordinates. 37: -37: NOTE: 13 % of the run time was spent in pair search, -37: you might want to increase nstlist (this has no effect on accuracy) -37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.005 0.003 192.9 +37: Time: 0.005 0.003 192.6 37: (ns/day) (hour/ns) -37: Performance: 94.306 0.254 -37: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/1 (52 ms) +37: Performance: 94.062 0.255 +37: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/1 (50 ms) 37: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/2 37: 37: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_2_input.mdp, line 13]: @@ -42925,7 +42972,7 @@ 37: scheme was introduced, but the group scheme was still the default. The 37: default is now the Verlet scheme, so you will observe different behaviour. 37: -37: Setting the LD random seed to -1438954507 +37: Setting the LD random seed to 1646845951 37: Generated 279 of the 1225 non-bonded parameter combinations 37: Excluding 2 bonded neighbours molecule type 'Methanol' 37: Excluding 2 bonded neighbours molecule type 'SOL' @@ -42960,20 +43007,20 @@ 37: 37: Writing final coordinates. 37: -37: NOTE: 12 % of the run time was spent in pair search, +37: NOTE: 18 % of the run time was spent in pair search, 37: you might want to increase nstlist (this has no effect on accuracy) 37: 37: Core t (s) Wall t (s) (%) -37: Time: 0.005 0.003 193.1 +37: Time: 0.006 0.003 193.7 37: (ns/day) (hour/ns) -37: Performance: 93.899 0.256 -37: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/2 (52 ms) -37: [----------] 3 tests from MdrunCanWrite/NptTrajectories (158 ms total) +37: Performance: 80.245 0.299 +37: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/2 (50 ms) +37: [----------] 3 tests from MdrunCanWrite/NptTrajectories (150 ms total) 37: 37: [----------] Global test environment tear-down -37: [==========] 29 tests from 11 test cases ran. (3303 ms total) +37: [==========] 29 tests from 11 test cases ran. (3202 ms total) 37: [ PASSED ] 29 tests. -37/40 Test #37: MdrunTests ....................... Passed 3.35 sec +37/40 Test #37: MdrunTests ....................... Passed 3.25 sec test 38 Start 38: MdrunNonIntegratorTests @@ -43035,7 +43082,7 @@ 38: Norm of force = 8.77219867200401e+01 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_0_minimize.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 (406 ms) +38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 (445 ms) 38: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_1_input.mdp, line 28]: @@ -43092,7 +43139,7 @@ 38: Norm of force = 1.84530029788115e+02 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_1_minimize.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 (394 ms) +38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 (411 ms) 38: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_2_input.mdp, line 28]: @@ -43147,7 +43194,7 @@ 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_2_minimize.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 turning H bonds into constraints... 38: This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 (213 ms) +38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 (209 ms) 38: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_3_input.mdp, line 28]: @@ -43209,7 +43256,7 @@ 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_3_minimize.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 turning H bonds into constraints... 38: This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 (187 ms) +38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 (195 ms) 38: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_4_input.mdp, line 28]: @@ -43274,7 +43321,7 @@ 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_4_minimize.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 3.000 Last energy frame read 2 time 3.000 turning all bonds into constraints... 38: This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 (55 ms) +38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 (53 ms) 38: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_5_input.mdp, line 28]: @@ -43346,8 +43393,8 @@ 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_5_minimize.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 turning all bonds into constraints... 38: This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 (70 ms) -38: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest (1336 ms total) +38: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 (61 ms) +38: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest (1374 ms total) 38: 38: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest 38: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 @@ -43392,7 +43439,7 @@ 38: Norm of force = 1.63839399694378e+00 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_0_minimize.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 (55 ms) +38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 (41 ms) 38: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_1_input.mdp, line 28]: @@ -43438,7 +43485,7 @@ 38: Norm of force = 1.05251679559258e+00 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_1_minimize.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Last energy frame read 1 time 0.000 This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 (40 ms) +38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 (68 ms) 38: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_2_input.mdp, line 28]: @@ -43494,7 +43541,7 @@ 38: Norm of force = 1.05251679559258e+00 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_2_minimize.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Last energy frame read 1 time 0.000 This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 (53 ms) +38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 (43 ms) 38: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_3_input.mdp, line 28]: @@ -43548,7 +43595,7 @@ 38: Norm of force = 4.62274878672162e+03 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_3_minimize.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 (242 ms) +38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 (175 ms) 38: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_4_input.mdp, line 28]: @@ -43605,7 +43652,7 @@ 38: Norm of force = 3.61390332570590e+03 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_4_minimize.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 (238 ms) +38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 (176 ms) 38: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_5_input.mdp, line 28]: @@ -43672,8 +43719,8 @@ 38: Norm of force = 1.01988549359680e+04 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_5_minimize.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 (235 ms) -38: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest (863 ms total) +38: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 (194 ms) +38: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest (699 ms total) 38: 38: [----------] 12 tests from NormalMdrunIsReproduced/MdrunRerunTest 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/0 @@ -43725,10 +43772,13 @@ 38: 38: Writing final coordinates. 38: +38: NOTE: 11 % of the run time was spent in pair search, +38: you might want to increase nstlist (this has no effect on accuracy) +38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.174 0.087 199.8 +38: Time: 0.004 0.002 192.9 38: (ns/day) (hour/ns) -38: Performance: 16.912 1.419 +38: Performance: 709.991 0.034 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_0.tpr, VERSION 2019.1 (double precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -43744,18 +43794,18 @@ 38: trr version: GMX_trn_file (double precision) 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 42 % of the run time was spent in pair search, +38: NOTE: 20 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.060 0.030 199.7 +38: Time: 0.002 0.001 194.8 38: (ns/day) (hour/ns) -38: Performance: 49.024 0.490 +38: Performance: 1175.910 0.020 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_0_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_0_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/0 (224 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/0 (103 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/1 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_1_input.mdp, line 28]: @@ -43806,9 +43856,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.212 0.106 199.8 +38: Time: 0.004 0.002 192.7 38: (ns/day) (hour/ns) -38: Performance: 13.865 1.731 +38: Performance: 679.302 0.035 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_1.tpr, VERSION 2019.1 (double precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -43823,18 +43873,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 42 % of the run time was spent in pair search, +38: NOTE: 19 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.059 0.030 199.7 +38: Time: 0.002 0.001 194.5 38: (ns/day) (hour/ns) -38: Performance: 49.628 0.484 +38: Performance: 1161.500 0.021 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_1_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_1_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/1 (242 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/1 (84 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/2 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_2_input.mdp, line 28]: @@ -43881,9 +43931,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.165 0.082 199.8 +38: Time: 0.004 0.002 192.2 38: (ns/day) (hour/ns) -38: Performance: 17.829 1.346 +38: Performance: 693.995 0.035 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_2.tpr, VERSION 2019.1 (double precision) 38: Changing nstlist from 8 to 100, rlist from 0.708 to 0.73 38: @@ -43899,18 +43949,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 42 % of the run time was spent in pair search, +38: NOTE: 20 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.060 0.030 199.7 +38: Time: 0.002 0.001 195.0 38: (ns/day) (hour/ns) -38: Performance: 49.252 0.487 +38: Performance: 1186.784 0.020 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_2_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_2_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/2 (240 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/2 (97 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/3 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_3_input.mdp, line 28]: @@ -43956,10 +44006,13 @@ 38: 38: Writing final coordinates. 38: +38: NOTE: 66 % of the run time was spent in pair search, +38: you might want to increase nstlist (this has no effect on accuracy) +38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.170 0.085 199.8 +38: Time: 0.014 0.007 197.6 38: (ns/day) (hour/ns) -38: Performance: 17.307 1.387 +38: Performance: 201.815 0.119 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_3.tpr, VERSION 2019.1 (double precision) 38: Changing nstlist from 8 to 100, rlist from 0.701 to 0.734 38: @@ -43979,14 +44032,14 @@ 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.002 0.001 195.0 +38: Time: 0.003 0.001 195.3 38: (ns/day) (hour/ns) -38: Performance: 1184.957 0.020 +38: Performance: 1143.816 0.021 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_3_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_3_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/3 (211 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/3 (113 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/4 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_4_input.mdp, line 28]: @@ -44045,9 +44098,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.005 0.003 193.9 +38: Time: 0.004 0.002 193.1 38: (ns/day) (hour/ns) -38: Performance: 544.174 0.044 +38: Performance: 650.882 0.037 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_4.tpr, VERSION 2019.1 (double precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -44066,14 +44119,14 @@ 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.001 194.7 +38: Time: 0.003 0.001 195.0 38: (ns/day) (hour/ns) -38: Performance: 1126.663 0.021 +38: Performance: 1064.373 0.023 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_4_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_4_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/4 (531 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/4 (451 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/5 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_5_input.mdp, line 28]: @@ -44132,9 +44185,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.005 0.002 193.3 +38: Time: 0.005 0.003 193.8 38: (ns/day) (hour/ns) -38: Performance: 590.208 0.041 +38: Performance: 573.452 0.042 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_5.tpr, VERSION 2019.1 (double precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -44153,14 +44206,14 @@ 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.001 194.3 +38: Time: 0.002 0.001 194.5 38: (ns/day) (hour/ns) -38: Performance: 1098.929 0.022 +38: Performance: 1309.372 0.018 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_5_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_5_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/5 (530 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/5 (486 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/6 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_6_input.mdp, line 28]: @@ -44215,9 +44268,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.005 0.002 193.0 +38: Time: 0.004 0.002 192.0 38: (ns/day) (hour/ns) -38: Performance: 609.417 0.039 +38: Performance: 752.485 0.032 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_6.tpr, VERSION 2019.1 (double precision) 38: Changing nstlist from 8 to 100, rlist from 0.734 to 0.826 38: @@ -44237,14 +44290,14 @@ 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.003 0.001 194.5 +38: Time: 0.002 0.001 194.1 38: (ns/day) (hour/ns) -38: Performance: 1091.917 0.022 +38: Performance: 1280.256 0.019 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_6_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_6_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/6 (556 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/6 (516 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/7 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_7_input.mdp, line 28]: @@ -44298,10 +44351,13 @@ 38: 38: Writing final coordinates. 38: +38: NOTE: 57 % of the run time was spent in pair search, +38: you might want to increase nstlist (this has no effect on accuracy) +38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.004 0.002 192.9 +38: Time: 0.012 0.006 197.3 38: (ns/day) (hour/ns) -38: Performance: 649.030 0.037 +38: Performance: 251.977 0.095 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_7.tpr, VERSION 2019.1 (double precision) 38: Changing nstlist from 8 to 25, rlist from 0.76 to 0.916 38: @@ -44321,14 +44377,14 @@ 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.002 0.001 194.6 +38: Time: 0.002 0.001 194.1 38: (ns/day) (hour/ns) -38: Performance: 1225.745 0.020 +38: Performance: 1266.569 0.019 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_7_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_7_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/7 (504 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/7 (520 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/8 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_8_input.mdp, line 28]: @@ -44404,9 +44460,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.016 0.008 197.1 +38: Time: 0.008 0.004 195.3 38: (ns/day) (hour/ns) -38: Performance: 184.168 0.130 +38: Performance: 344.186 0.070 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_8.tpr, VERSION 2019.1 (double precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -44421,18 +44477,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 24 % of the run time was spent in pair search, +38: NOTE: 17 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.005 0.003 196.9 +38: Time: 0.004 0.002 196.0 38: (ns/day) (hour/ns) -38: Performance: 559.901 0.043 +38: Performance: 700.067 0.034 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_8_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_8_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/8 (139 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/8 (155 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/9 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_9_input.mdp, line 28]: @@ -44507,13 +44563,10 @@ 38: 38: Writing final coordinates. 38: -38: NOTE: 53 % of the run time was spent in pair search, -38: you might want to increase nstlist (this has no effect on accuracy) -38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.021 0.011 198.0 +38: Time: 0.009 0.005 195.9 38: (ns/day) (hour/ns) -38: Performance: 139.289 0.172 +38: Performance: 314.814 0.076 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_9.tpr, VERSION 2019.1 (double precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -44528,18 +44581,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 25 % of the run time was spent in pair search, +38: NOTE: 17 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.005 0.003 196.7 +38: Time: 0.004 0.002 195.9 38: (ns/day) (hour/ns) -38: Performance: 550.446 0.044 +38: Performance: 701.183 0.034 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_9_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_9_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/9 (136 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/9 (148 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/10 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_10_input.mdp, line 28]: @@ -44611,9 +44664,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.020 0.010 197.4 +38: Time: 0.219 0.110 199.8 38: (ns/day) (hour/ns) -38: Performance: 147.658 0.163 +38: Performance: 13.410 1.790 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_10.tpr, VERSION 2019.1 (double precision) 38: Changing nstlist from 8 to 100, rlist from 0.745 to 0.873 38: @@ -44629,18 +44682,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 29 % of the run time was spent in pair search, +38: NOTE: 27 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.005 0.003 197.0 +38: Time: 0.040 0.020 199.5 38: (ns/day) (hour/ns) -38: Performance: 551.481 0.044 +38: Performance: 73.702 0.326 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_10_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_10_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/10 (181 ms) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/10 (359 ms) 38: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/11 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_11_input.mdp, line 28]: @@ -44712,9 +44765,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.011 0.006 196.6 +38: Time: 0.011 0.006 196.4 38: (ns/day) (hour/ns) -38: Performance: 264.767 0.091 +38: Performance: 263.262 0.091 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_11.tpr, VERSION 2019.1 (double precision) 38: Changing nstlist from 8 to 40, rlist from 0.727 to 0.874 38: @@ -44730,19 +44783,19 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 23 % of the run time was spent in pair search, +38: NOTE: 19 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.005 0.003 197.1 +38: Time: 0.005 0.002 196.8 38: (ns/day) (hour/ns) -38: Performance: 559.444 0.043 +38: Performance: 619.591 0.039 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_11_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_11_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/11 (179 ms) -38: [----------] 12 tests from NormalMdrunIsReproduced/MdrunRerunTest (3673 ms total) +38: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/11 (172 ms) +38: [----------] 12 tests from NormalMdrunIsReproduced/MdrunRerunTest (3204 ms total) 38: 38: [----------] 33 tests from MdrunIsReproduced/MdrunRerunFreeEnergyTest 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/0 @@ -44805,13 +44858,10 @@ 38: 38: Writing final coordinates. 38: -38: NOTE: 28 % of the run time was spent in pair search, -38: you might want to increase nstlist (this has no effect on accuracy) -38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.013 0.007 196.5 +38: Time: 0.011 0.005 195.4 38: (ns/day) (hour/ns) -38: Performance: 218.810 0.110 +38: Performance: 270.071 0.089 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_0.tpr, VERSION 2019.1 (double precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -44826,18 +44876,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 18 % of the run time was spent in pair search, +38: NOTE: 16 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.006 0.003 196.2 +38: Time: 0.006 0.003 195.2 38: (ns/day) (hour/ns) -38: Performance: 457.628 0.052 +38: Performance: 491.158 0.049 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_0_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_0_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/0 (146 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/0 (163 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/1 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_1_input.mdp, line 42]: @@ -44898,13 +44948,13 @@ 38: 38: Writing final coordinates. 38: -38: NOTE: 12 % of the run time was spent in pair search, +38: NOTE: 54 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.011 0.006 196.1 +38: Time: 0.022 0.011 197.6 38: (ns/day) (hour/ns) -38: Performance: 254.623 0.094 +38: Performance: 134.180 0.179 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_1.tpr, VERSION 2019.1 (double precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -44919,18 +44969,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 19 % of the run time was spent in pair search, +38: NOTE: 16 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.006 0.003 195.7 +38: Time: 0.006 0.003 195.6 38: (ns/day) (hour/ns) -38: Performance: 447.295 0.054 +38: Performance: 485.468 0.049 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_1_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_1_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/1 (131 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/1 (148 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/2 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_2_input.mdp, line 42]: @@ -44991,13 +45041,13 @@ 38: 38: Writing final coordinates. 38: -38: NOTE: 12 % of the run time was spent in pair search, +38: NOTE: 53 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.011 0.005 195.7 +38: Time: 0.022 0.011 197.5 38: (ns/day) (hour/ns) -38: Performance: 270.557 0.089 +38: Performance: 134.306 0.179 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_2.tpr, VERSION 2019.1 (double precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -45012,18 +45062,15 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 19 % of the run time was spent in pair search, -38: you might want to increase nstlist (this has no effect on accuracy) -38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.006 0.003 196.3 +38: Time: 0.025 0.013 198.8 38: (ns/day) (hour/ns) -38: Performance: 461.468 0.052 +38: Performance: 117.166 0.205 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_2_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_2_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/2 (148 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/2 (153 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/3 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_3_input.mdp, line 42]: @@ -45084,13 +45131,13 @@ 38: 38: Writing final coordinates. 38: -38: NOTE: 54 % of the run time was spent in pair search, +38: NOTE: 53 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.021 0.011 197.7 +38: Time: 0.022 0.011 197.6 38: (ns/day) (hour/ns) -38: Performance: 135.660 0.177 +38: Performance: 131.317 0.183 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_3.tpr, VERSION 2019.1 (double precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -45105,18 +45152,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 15 % of the run time was spent in pair search, +38: NOTE: 16 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.006 0.003 196.1 +38: Time: 0.006 0.003 195.4 38: (ns/day) (hour/ns) -38: Performance: 474.257 0.051 +38: Performance: 506.669 0.047 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_3_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_3_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/3 (168 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/3 (127 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/4 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_4_input.mdp, line 42]: @@ -45178,9 +45225,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.010 0.005 195.6 +38: Time: 0.010 0.005 195.4 38: (ns/day) (hour/ns) -38: Performance: 275.753 0.087 +38: Performance: 284.870 0.084 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_4.tpr, VERSION 2019.1 (double precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -45195,18 +45242,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 64 % of the run time was spent in pair search, +38: NOTE: 16 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.014 0.007 198.3 +38: Time: 0.006 0.003 195.7 38: (ns/day) (hour/ns) -38: Performance: 212.867 0.113 +38: Performance: 491.315 0.049 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_4_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_4_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/4 (127 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/4 (148 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/5 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_5_input.mdp, line 42]: @@ -45267,13 +45314,10 @@ 38: 38: Writing final coordinates. 38: -38: NOTE: 12 % of the run time was spent in pair search, -38: you might want to increase nstlist (this has no effect on accuracy) -38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.011 0.005 195.7 +38: Time: 0.010 0.005 195.3 38: (ns/day) (hour/ns) -38: Performance: 271.571 0.088 +38: Performance: 285.742 0.084 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_5.tpr, VERSION 2019.1 (double precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -45288,18 +45332,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 19 % of the run time was spent in pair search, +38: NOTE: 38 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.006 0.003 196.2 +38: Time: 0.054 0.027 199.4 38: (ns/day) (hour/ns) -38: Performance: 456.645 0.053 +38: Performance: 54.104 0.444 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_5_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_5_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/5 (141 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/5 (172 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/6 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_6_input.mdp, line 42]: @@ -45360,13 +45404,10 @@ 38: 38: Writing final coordinates. 38: -38: NOTE: 54 % of the run time was spent in pair search, -38: you might want to increase nstlist (this has no effect on accuracy) -38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.021 0.011 197.6 +38: Time: 0.152 0.076 199.6 38: (ns/day) (hour/ns) -38: Performance: 136.345 0.176 +38: Performance: 19.309 1.243 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_6.tpr, VERSION 2019.1 (double precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -45381,18 +45422,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 19 % of the run time was spent in pair search, +38: NOTE: 15 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.006 0.003 196.2 +38: Time: 0.006 0.003 195.5 38: (ns/day) (hour/ns) -38: Performance: 453.085 0.053 +38: Performance: 489.597 0.049 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_6_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_6_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/6 (156 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/6 (241 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/7 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_7_input.mdp, line 42]: @@ -45453,13 +45494,10 @@ 38: 38: Writing final coordinates. 38: -38: NOTE: 11 % of the run time was spent in pair search, -38: you might want to increase nstlist (this has no effect on accuracy) -38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.010 0.005 195.8 +38: Time: 0.010 0.005 195.4 38: (ns/day) (hour/ns) -38: Performance: 283.415 0.085 +38: Performance: 298.623 0.080 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_7.tpr, VERSION 2019.1 (double precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -45474,18 +45512,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 73 % of the run time was spent in pair search, +38: NOTE: 20 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.020 0.010 198.6 +38: Time: 0.006 0.003 195.9 38: (ns/day) (hour/ns) -38: Performance: 146.312 0.164 +38: Performance: 488.510 0.049 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_7_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_7_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/7 (151 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/7 (175 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/8 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_8_input.mdp, line 42]: @@ -45546,13 +45584,13 @@ 38: 38: Writing final coordinates. 38: -38: NOTE: 12 % of the run time was spent in pair search, +38: NOTE: 54 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.010 0.005 195.5 +38: Time: 0.022 0.011 197.7 38: (ns/day) (hour/ns) -38: Performance: 291.736 0.082 +38: Performance: 134.675 0.178 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_8.tpr, VERSION 2019.1 (double precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -45567,18 +45605,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 19 % of the run time was spent in pair search, +38: NOTE: 14 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.006 0.003 196.3 +38: Time: 0.005 0.003 195.8 38: (ns/day) (hour/ns) -38: Performance: 454.254 0.053 +38: Performance: 545.185 0.044 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_8_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_8_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/8 (173 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/8 (152 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/9 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_9_input.mdp, line 42]: @@ -45639,13 +45677,10 @@ 38: 38: Writing final coordinates. 38: -38: NOTE: 12 % of the run time was spent in pair search, -38: you might want to increase nstlist (this has no effect on accuracy) -38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.011 0.006 195.2 +38: Time: 0.009 0.005 194.8 38: (ns/day) (hour/ns) -38: Performance: 265.120 0.091 +38: Performance: 306.864 0.078 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_9.tpr, VERSION 2019.1 (double precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -45660,13 +45695,13 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 19 % of the run time was spent in pair search, +38: NOTE: 14 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.006 0.003 196.1 +38: Time: 0.005 0.003 195.4 38: (ns/day) (hour/ns) -38: Performance: 447.035 0.054 +38: Performance: 539.504 0.044 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_9_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_9_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 @@ -45732,13 +45767,10 @@ 38: 38: Writing final coordinates. 38: -38: NOTE: 12 % of the run time was spent in pair search, -38: you might want to increase nstlist (this has no effect on accuracy) -38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.011 0.006 195.5 +38: Time: 0.010 0.005 195.2 38: (ns/day) (hour/ns) -38: Performance: 264.403 0.091 +38: Performance: 286.646 0.084 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_10.tpr, VERSION 2019.1 (double precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -45753,18 +45785,15 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 20 % of the run time was spent in pair search, -38: you might want to increase nstlist (this has no effect on accuracy) -38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.006 0.003 196.0 +38: Time: 0.033 0.016 199.1 38: (ns/day) (hour/ns) -38: Performance: 474.330 0.051 +38: Performance: 89.058 0.269 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_10_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_10_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/10 (147 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/10 (174 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/11 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_11_input.mdp, line 42]: @@ -45825,13 +45854,13 @@ 38: 38: Writing final coordinates. 38: -38: NOTE: 12 % of the run time was spent in pair search, +38: NOTE: 26 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.012 0.006 196.2 +38: Time: 0.016 0.008 196.7 38: (ns/day) (hour/ns) -38: Performance: 236.273 0.102 +38: Performance: 184.454 0.130 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_11.tpr, VERSION 2019.1 (double precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -45846,18 +45875,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 19 % of the run time was spent in pair search, +38: NOTE: 74 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.006 0.003 196.0 +38: Time: 0.020 0.010 198.3 38: (ns/day) (hour/ns) -38: Performance: 453.251 0.053 +38: Performance: 145.256 0.165 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_11_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_11_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/11 (172 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/11 (118 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/12 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_12_input.mdp, line 42]: @@ -45918,13 +45947,13 @@ 38: 38: Writing final coordinates. 38: -38: NOTE: 11 % of the run time was spent in pair search, +38: NOTE: 13 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.013 0.006 196.2 +38: Time: 0.011 0.006 195.7 38: (ns/day) (hour/ns) -38: Performance: 226.401 0.106 +38: Performance: 261.752 0.092 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_12.tpr, VERSION 2019.1 (double precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -45939,18 +45968,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 20 % of the run time was spent in pair search, +38: NOTE: 26 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.006 0.003 196.0 +38: Time: 0.006 0.003 196.4 38: (ns/day) (hour/ns) -38: Performance: 458.275 0.052 +38: Performance: 467.881 0.051 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_12_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_12_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/12 (144 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/12 (124 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/13 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_13_input.mdp, line 42]: @@ -46011,13 +46040,10 @@ 38: 38: Writing final coordinates. 38: -38: NOTE: 11 % of the run time was spent in pair search, -38: you might want to increase nstlist (this has no effect on accuracy) -38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.012 0.006 196.1 +38: Time: 0.012 0.006 195.8 38: (ns/day) (hour/ns) -38: Performance: 237.852 0.101 +38: Performance: 243.454 0.099 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_13.tpr, VERSION 2019.1 (double precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -46032,18 +46058,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 20 % of the run time was spent in pair search, +38: NOTE: 40 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.006 0.003 196.2 +38: Time: 0.078 0.039 199.6 38: (ns/day) (hour/ns) -38: Performance: 453.085 0.053 +38: Performance: 37.458 0.641 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_13_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_13_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/13 (124 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/13 (177 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/14 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_14_input.mdp, line 42]: @@ -46104,10 +46130,13 @@ 38: 38: Writing final coordinates. 38: +38: NOTE: 44 % of the run time was spent in pair search, +38: you might want to increase nstlist (this has no effect on accuracy) +38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.011 0.006 195.8 +38: Time: 0.018 0.009 197.4 38: (ns/day) (hour/ns) -38: Performance: 256.723 0.093 +38: Performance: 160.278 0.150 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_14.tpr, VERSION 2019.1 (double precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -46122,18 +46151,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 61 % of the run time was spent in pair search, +38: NOTE: 46 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.012 0.006 197.9 +38: Time: 0.077 0.039 199.6 38: (ns/day) (hour/ns) -38: Performance: 241.289 0.099 +38: Performance: 38.129 0.629 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_14_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_14_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/14 (151 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/14 (178 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/15 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_15_input.mdp, line 42]: @@ -46194,13 +46223,10 @@ 38: 38: Writing final coordinates. 38: -38: NOTE: 52 % of the run time was spent in pair search, -38: you might want to increase nstlist (this has no effect on accuracy) -38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.022 0.011 197.4 +38: Time: 0.270 0.135 199.8 38: (ns/day) (hour/ns) -38: Performance: 130.050 0.185 +38: Performance: 10.869 2.208 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_15.tpr, VERSION 2019.1 (double precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -46215,15 +46241,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: +38: NOTE: 17 % of the run time was spent in pair search, +38: you might want to increase nstlist (this has no effect on accuracy) +38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.016 0.008 198.3 +38: Time: 0.005 0.003 195.5 38: (ns/day) (hour/ns) -38: Performance: 184.350 0.130 +38: Performance: 531.590 0.045 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_15_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_15_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/15 (126 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/15 (273 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/16 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_16_input.mdp, line 42]: @@ -46285,9 +46314,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.015 0.008 196.5 +38: Time: 0.010 0.005 195.3 38: (ns/day) (hour/ns) -38: Performance: 193.608 0.124 +38: Performance: 291.350 0.082 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_16.tpr, VERSION 2019.1 (double precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -46302,18 +46331,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 25 % of the run time was spent in pair search, +38: NOTE: 31 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.006 0.003 196.1 +38: Time: 0.048 0.024 199.4 38: (ns/day) (hour/ns) -38: Performance: 459.095 0.052 +38: Performance: 61.153 0.392 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_16_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_16_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/16 (144 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/16 (189 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/17 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_17_input.mdp, line 42]: @@ -46375,9 +46404,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.015 0.008 196.5 +38: Time: 0.010 0.005 195.4 38: (ns/day) (hour/ns) -38: Performance: 192.056 0.125 +38: Performance: 295.955 0.081 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_17.tpr, VERSION 2019.1 (double precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -46392,18 +46421,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 16 % of the run time was spent in pair search, +38: NOTE: 14 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.006 0.003 195.4 +38: Time: 0.005 0.003 195.9 38: (ns/day) (hour/ns) -38: Performance: 493.558 0.049 +38: Performance: 535.378 0.045 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_17_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_17_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/17 (140 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/17 (133 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/18 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_18_input.mdp, line 42]: @@ -46465,9 +46494,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.011 0.006 195.8 +38: Time: 0.022 0.011 197.3 38: (ns/day) (hour/ns) -38: Performance: 262.701 0.091 +38: Performance: 128.875 0.186 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_18.tpr, VERSION 2019.1 (double precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -46482,18 +46511,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 15 % of the run time was spent in pair search, +38: NOTE: 21 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.005 0.003 195.9 +38: Time: 0.006 0.003 195.9 38: (ns/day) (hour/ns) -38: Performance: 527.538 0.045 +38: Performance: 457.017 0.053 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_18_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_18_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/18 (135 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/18 (151 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/19 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_19_input.mdp, line 42]: @@ -46554,13 +46583,10 @@ 38: 38: Writing final coordinates. 38: -38: NOTE: 50 % of the run time was spent in pair search, -38: you might want to increase nstlist (this has no effect on accuracy) -38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.022 0.011 197.5 +38: Time: 0.011 0.006 195.4 38: (ns/day) (hour/ns) -38: Performance: 130.444 0.184 +38: Performance: 257.292 0.093 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_19.tpr, VERSION 2019.1 (double precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -46575,18 +46601,15 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 18 % of the run time was spent in pair search, -38: you might want to increase nstlist (this has no effect on accuracy) -38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.006 0.003 196.0 +38: Time: 0.026 0.013 198.8 38: (ns/day) (hour/ns) -38: Performance: 499.036 0.048 +38: Performance: 112.331 0.214 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_19_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_19_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/19 (152 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/19 (194 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/20 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_20_input.mdp, line 42]: @@ -46647,10 +46670,13 @@ 38: 38: Writing final coordinates. 38: +38: NOTE: 45 % of the run time was spent in pair search, +38: you might want to increase nstlist (this has no effect on accuracy) +38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.011 0.006 195.7 +38: Time: 0.021 0.011 197.5 38: (ns/day) (hour/ns) -38: Performance: 262.757 0.091 +38: Performance: 136.939 0.175 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_20.tpr, VERSION 2019.1 (double precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -46665,18 +46691,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 16 % of the run time was spent in pair search, +38: NOTE: 15 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.006 0.003 195.6 +38: Time: 0.006 0.003 194.8 38: (ns/day) (hour/ns) -38: Performance: 493.914 0.049 +38: Performance: 482.427 0.050 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_20_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_20_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/20 (152 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/20 (158 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/21 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_21_input.mdp, line 42]: @@ -46737,10 +46763,13 @@ 38: 38: Writing final coordinates. 38: +38: NOTE: 49 % of the run time was spent in pair search, +38: you might want to increase nstlist (this has no effect on accuracy) +38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.015 0.008 196.5 +38: Time: 0.022 0.011 197.2 38: (ns/day) (hour/ns) -38: Performance: 194.826 0.123 +38: Performance: 130.416 0.184 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_21.tpr, VERSION 2019.1 (double precision) 38: Can not increase nstlist because an NVE ensemble is used 38: Using 1 MPI thread @@ -46755,15 +46784,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: +38: NOTE: 16 % of the run time was spent in pair search, +38: you might want to increase nstlist (this has no effect on accuracy) +38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.016 0.008 197.9 +38: Time: 0.006 0.003 195.0 38: (ns/day) (hour/ns) -38: Performance: 184.432 0.130 +38: Performance: 485.545 0.049 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_21_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_21_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/21 (177 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/21 (144 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/22 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_22_input.mdp, line 42]: @@ -46821,9 +46853,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.020 0.010 197.1 +38: Time: 0.016 0.008 196.5 38: (ns/day) (hour/ns) -38: Performance: 146.204 0.164 +38: Performance: 180.901 0.133 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_22.tpr, VERSION 2019.1 (double precision) 38: Changing nstlist from 8 to 25, rlist from 0.75 to 0.883 38: @@ -46839,18 +46871,15 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 20 % of the run time was spent in pair search, -38: you might want to increase nstlist (this has no effect on accuracy) -38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.006 0.003 195.6 +38: Time: 0.011 0.006 197.4 38: (ns/day) (hour/ns) -38: Performance: 475.869 0.050 +38: Performance: 263.127 0.091 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_22_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_22_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/22 (191 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/22 (182 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/23 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_23_input.mdp, line 42]: @@ -46907,13 +46936,10 @@ 38: 38: Writing final coordinates. 38: -38: NOTE: 26 % of the run time was spent in pair search, -38: you might want to increase nstlist (this has no effect on accuracy) -38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.014 0.007 196.8 +38: Time: 0.011 0.006 195.7 38: (ns/day) (hour/ns) -38: Performance: 209.423 0.115 +38: Performance: 254.087 0.094 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_23.tpr, VERSION 2019.1 (double precision) 38: Changing nstlist from 8 to 25, rlist from 0.75 to 0.883 38: @@ -46929,18 +46955,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 16 % of the run time was spent in pair search, +38: NOTE: 38 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.006 0.003 195.4 +38: Time: 0.041 0.021 199.2 38: (ns/day) (hour/ns) -38: Performance: 498.712 0.048 +38: Performance: 71.365 0.336 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_23_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_23_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/23 (156 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/23 (283 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/24 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_24_input.mdp, line 42]: @@ -46997,10 +47023,13 @@ 38: 38: Writing final coordinates. 38: +38: NOTE: 11 % of the run time was spent in pair search, +38: you might want to increase nstlist (this has no effect on accuracy) +38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.011 0.005 195.9 +38: Time: 0.012 0.006 195.9 38: (ns/day) (hour/ns) -38: Performance: 267.480 0.090 +38: Performance: 240.997 0.100 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_24.tpr, VERSION 2019.1 (double precision) 38: Changing nstlist from 8 to 25, rlist from 0.75 to 0.883 38: @@ -47016,18 +47045,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 17 % of the run time was spent in pair search, +38: NOTE: 28 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.006 0.003 196.1 +38: Time: 0.007 0.004 196.0 38: (ns/day) (hour/ns) -38: Performance: 501.554 0.048 +38: Performance: 418.889 0.057 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_24_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_24_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/24 (187 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/24 (218 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/25 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_25_input.mdp, line 42]: @@ -47084,10 +47113,13 @@ 38: 38: Writing final coordinates. 38: +38: NOTE: 10 % of the run time was spent in pair search, +38: you might want to increase nstlist (this has no effect on accuracy) +38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.010 0.005 195.5 +38: Time: 0.012 0.006 195.9 38: (ns/day) (hour/ns) -38: Performance: 275.149 0.087 +38: Performance: 232.607 0.103 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_25.tpr, VERSION 2019.1 (double precision) 38: Changing nstlist from 8 to 25, rlist from 0.75 to 0.883 38: @@ -47103,18 +47135,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 67 % of the run time was spent in pair search, +38: NOTE: 21 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.015 0.008 198.2 +38: Time: 0.007 0.003 195.7 38: (ns/day) (hour/ns) -38: Performance: 194.016 0.124 +38: Performance: 433.539 0.055 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_25_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_25_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/25 (156 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/25 (197 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/26 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_26_input.mdp, line 42]: @@ -47172,9 +47204,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.011 0.005 195.7 +38: Time: 0.013 0.007 196.1 38: (ns/day) (hour/ns) -38: Performance: 268.342 0.089 +38: Performance: 222.726 0.108 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_26.tpr, VERSION 2019.1 (double precision) 38: Changing nstlist from 8 to 25, rlist from 0.75 to 0.883 38: @@ -47190,15 +47222,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: +38: NOTE: 23 % of the run time was spent in pair search, +38: you might want to increase nstlist (this has no effect on accuracy) +38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.029 0.015 199.0 +38: Time: 0.007 0.004 195.3 38: (ns/day) (hour/ns) -38: Performance: 100.711 0.238 +38: Performance: 417.243 0.058 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_26_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_26_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/26 (187 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/26 (213 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/27 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_27_input.mdp, line 42]: @@ -47256,9 +47291,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.010 0.005 195.7 +38: Time: 0.013 0.007 195.9 38: (ns/day) (hour/ns) -38: Performance: 281.203 0.085 +38: Performance: 216.693 0.111 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_27.tpr, VERSION 2019.1 (double precision) 38: Changing nstlist from 8 to 25, rlist from 0.75 to 0.883 38: @@ -47274,15 +47309,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: +38: NOTE: 17 % of the run time was spent in pair search, +38: you might want to increase nstlist (this has no effect on accuracy) +38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.013 0.007 198.0 +38: Time: 0.006 0.003 195.2 38: (ns/day) (hour/ns) -38: Performance: 224.700 0.107 +38: Performance: 443.687 0.054 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_27_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_27_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/27 (159 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/27 (214 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/28 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_28_input.mdp, line 42]: @@ -47340,9 +47378,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.011 0.006 195.8 +38: Time: 0.010 0.005 195.3 38: (ns/day) (hour/ns) -38: Performance: 261.674 0.092 +38: Performance: 284.528 0.084 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_28.tpr, VERSION 2019.1 (double precision) 38: Changing nstlist from 8 to 25, rlist from 0.75 to 0.883 38: @@ -47358,18 +47396,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 74 % of the run time was spent in pair search, +38: NOTE: 15 % of the run time was spent in pair search, 38: you might want to increase nstlist (this has no effect on accuracy) 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.019 0.010 198.6 +38: Time: 0.005 0.003 195.4 38: (ns/day) (hour/ns) -38: Performance: 150.086 0.160 +38: Performance: 524.172 0.046 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_28_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_28_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/28 (174 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/28 (181 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/29 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_29_input.mdp, line 42]: @@ -47427,9 +47465,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.011 0.006 195.6 +38: Time: 0.010 0.005 195.3 38: (ns/day) (hour/ns) -38: Performance: 258.664 0.093 +38: Performance: 288.269 0.083 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_29.tpr, VERSION 2019.1 (double precision) 38: Changing nstlist from 8 to 25, rlist from 0.75 to 0.883 38: @@ -47445,15 +47483,18 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: +38: NOTE: 16 % of the run time was spent in pair search, +38: you might want to increase nstlist (this has no effect on accuracy) +38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.017 0.008 198.5 +38: Time: 0.006 0.003 195.5 38: (ns/day) (hour/ns) -38: Performance: 175.441 0.137 +38: Performance: 481.033 0.050 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_29_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_29_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/29 (202 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/29 (199 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/30 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_30_input.mdp, line 42]: @@ -47511,9 +47552,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.011 0.005 195.8 +38: Time: 0.011 0.006 195.6 38: (ns/day) (hour/ns) -38: Performance: 269.457 0.089 +38: Performance: 262.365 0.091 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_30.tpr, VERSION 2019.1 (double precision) 38: Changing nstlist from 8 to 25, rlist from 0.75 to 0.883 38: @@ -47529,18 +47570,15 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: -38: NOTE: 16 % of the run time was spent in pair search, -38: you might want to increase nstlist (this has no effect on accuracy) -38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.005 0.003 195.6 +38: Time: 0.016 0.008 197.9 38: (ns/day) (hour/ns) -38: Performance: 527.810 0.045 +38: Performance: 182.736 0.131 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_30_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_30_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/30 (177 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/30 (181 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/31 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_31_input.mdp, line 42]: @@ -47598,9 +47636,9 @@ 38: Writing final coordinates. 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.011 0.005 195.9 +38: Time: 0.026 0.013 197.6 38: (ns/day) (hour/ns) -38: Performance: 273.464 0.088 +38: Performance: 111.168 0.216 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_31.tpr, VERSION 2019.1 (double precision) 38: Changing nstlist from 8 to 25, rlist from 0.75 to 0.883 38: @@ -47617,14 +47655,14 @@ 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.016 0.008 198.4 +38: Time: 0.018 0.009 198.2 38: (ns/day) (hour/ns) -38: Performance: 178.827 0.134 +38: Performance: 159.866 0.150 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_31_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_31_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/31 (147 ms) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/31 (204 ms) 38: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/32 38: 38: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_32_input.mdp, line 42]: @@ -47681,13 +47719,10 @@ 38: 38: Writing final coordinates. 38: -38: NOTE: 38 % of the run time was spent in pair search, -38: you might want to increase nstlist (this has no effect on accuracy) -38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.017 0.009 197.2 +38: Time: 0.011 0.006 195.3 38: (ns/day) (hour/ns) -38: Performance: 172.021 0.140 +38: Performance: 251.710 0.095 38: Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_32.tpr, VERSION 2019.1 (double precision) 38: Changing nstlist from 8 to 25, rlist from 0.75 to 0.883 38: @@ -47703,21 +47738,24 @@ 38: 38: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 38: +38: NOTE: 15 % of the run time was spent in pair search, +38: you might want to increase nstlist (this has no effect on accuracy) +38: 38: Core t (s) Wall t (s) (%) -38: Time: 0.017 0.008 198.4 +38: Time: 0.006 0.003 195.4 38: (ns/day) (hour/ns) -38: Performance: 174.620 0.137 +38: Performance: 476.605 0.050 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_32_normal.edr as double precision energy file 38: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_32_rerun.edr as double precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 38: -38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/32 (155 ms) -38: [----------] 33 tests from MdrunIsReproduced/MdrunRerunFreeEnergyTest (5154 ms total) +38: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/32 (175 ms) +38: [----------] 33 tests from MdrunIsReproduced/MdrunRerunFreeEnergyTest (5899 ms total) 38: 38: [----------] Global test environment tear-down -38: [==========] 57 tests from 4 test cases ran. (11027 ms total) +38: [==========] 57 tests from 4 test cases ran. (11176 ms total) 38: [ PASSED ] 57 tests. -38/40 Test #38: MdrunNonIntegratorTests .......... Passed 11.15 sec +38/40 Test #38: MdrunNonIntegratorTests .......... Passed 11.31 sec test 39 Start 39: LegacyGroupSchemeMdrunTests @@ -47761,7 +47799,7 @@ 39: Largest charge group radii for Van der Waals: 0.100, 0.100 nm 39: Largest charge group radii for Coulomb: 0.100, 0.100 nm 39: This run will generate roughly 0 Mb of data -39: [ OK ] Simple/TpiTest.ReproducesOutput/0 (469 ms) +39: [ OK ] Simple/TpiTest.ReproducesOutput/0 (487 ms) 39: [ RUN ] Simple/TpiTest.ReproducesOutput/1 39: 39: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Simple_TpiTest_ReproducesOutput_1_input.mdp]: @@ -47797,13 +47835,13 @@ 39: Largest charge group radii for Van der Waals: 0.100, 0.100 nm 39: Largest charge group radii for Coulomb: 0.100, 0.100 nm 39: This run will generate roughly 0 Mb of data -39: [ OK ] Simple/TpiTest.ReproducesOutput/1 (471 ms) -39: [----------] 2 tests from Simple/TpiTest (940 ms total) +39: [ OK ] Simple/TpiTest.ReproducesOutput/1 (485 ms) +39: [----------] 2 tests from Simple/TpiTest (972 ms total) 39: 39: [----------] Global test environment tear-down -39: [==========] 2 tests from 1 test case ran. (940 ms total) +39: [==========] 2 tests from 1 test case ran. (972 ms total) 39: [ PASSED ] 2 tests. -39/40 Test #39: LegacyGroupSchemeMdrunTests ...... Passed 0.96 sec +39/40 Test #39: LegacyGroupSchemeMdrunTests ...... Passed 0.99 sec test 40 Start 40: MdrunMpiTests @@ -47818,7 +47856,7 @@ 40: For a correct single-point energy evaluation with nsteps = 0, use 40: continuation = yes to avoid constraining the input coordinates. 40: -40: Setting the LD random seed to 880926019 +40: Setting the LD random seed to 1432862485 40: Generated 3 of the 3 non-bonded parameter combinations 40: Generating 1-4 interactions: fudge = 0.5 40: Generated 3 of the 3 1-4 parameter combinations @@ -47851,16 +47889,16 @@ 40: starting mdrun 'spc2' 40: 0 steps, 0.0 ps. 40: -40: NOTE: 94 % of the run time was spent in pair search, +40: NOTE: 92 % of the run time was spent in pair search, 40: you might want to increase nstlist (this has no effect on accuracy) 40: 40: Core t (s) Wall t (s) (%) -40: Time: 0.013 0.006 197.4 +40: Time: 0.009 0.005 196.1 40: (ns/day) (hour/ns) -40: Performance: 13.575 1.768 +40: Performance: 18.403 1.304 40: This run will generate roughly 0 Mb of data -40: [ OK ] DomainDecompositionSpecialCasesTest.AnEmptyDomainWorks (68 ms) -40: [----------] 1 test from DomainDecompositionSpecialCasesTest (68 ms total) +40: [ OK ] DomainDecompositionSpecialCasesTest.AnEmptyDomainWorks (83 ms) +40: [----------] 1 test from DomainDecompositionSpecialCasesTest (83 ms total) 40: 40: [----------] 4 tests from MimicTest 40: [ RUN ] MimicTest.OneQuantumMol @@ -47876,7 +47914,7 @@ 40: For a correct single-point energy evaluation with nsteps = 0, use 40: continuation = yes to avoid constraining the input coordinates. 40: -40: Setting the LD random seed to -2125070357 +40: Setting the LD random seed to -591084318 40: Generated 10 of the 10 non-bonded parameter combinations 40: Generating 1-4 interactions: fudge = 0.5 40: Generated 10 of the 10 1-4 parameter combinations @@ -47911,16 +47949,16 @@ 40: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 40: Reading frame 0 time 0.000 Last frame 0 time 0.000 40: -40: NOTE: 80 % of the run time was spent in pair search, +40: NOTE: 89 % of the run time was spent in pair search, 40: you might want to increase nstlist (this has no effect on accuracy) 40: 40: Core t (s) Wall t (s) (%) -40: Time: 0.009 0.005 198.6 +40: Time: 0.010 0.005 198.2 40: (ns/day) (hour/ns) -40: Performance: 18.876 1.271 +40: Performance: 16.804 1.428 40: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_OneQuantumMol.edr as double precision energy file 40: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -40: [ OK ] MimicTest.OneQuantumMol (76 ms) +40: [ OK ] MimicTest.OneQuantumMol (80 ms) 40: [ RUN ] MimicTest.AllQuantumMol 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_AllQuantumMol_input.mdp, line 3]: @@ -47934,7 +47972,7 @@ 40: For a correct single-point energy evaluation with nsteps = 0, use 40: continuation = yes to avoid constraining the input coordinates. 40: -40: Setting the LD random seed to 565892562 +40: Setting the LD random seed to -1407985110 40: Generated 10 of the 10 non-bonded parameter combinations 40: Generating 1-4 interactions: fudge = 0.5 40: Generated 10 of the 10 1-4 parameter combinations @@ -47969,16 +48007,16 @@ 40: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 40: Reading frame 0 time 0.000 Last frame 0 time 0.000 40: -40: NOTE: 93 % of the run time was spent in pair search, +40: NOTE: 91 % of the run time was spent in pair search, 40: you might want to increase nstlist (this has no effect on accuracy) 40: 40: Core t (s) Wall t (s) (%) -40: Time: 0.013 0.007 198.8 +40: Time: 0.013 0.007 198.5 40: (ns/day) (hour/ns) -40: Performance: 12.824 1.871 +40: Performance: 12.941 1.854 40: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_AllQuantumMol.edr as double precision energy file 40: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -40: [ OK ] MimicTest.AllQuantumMol (56 ms) +40: [ OK ] MimicTest.AllQuantumMol (48 ms) 40: [ RUN ] MimicTest.TwoQuantumMol 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_TwoQuantumMol_input.mdp, line 3]: @@ -47992,7 +48030,7 @@ 40: For a correct single-point energy evaluation with nsteps = 0, use 40: continuation = yes to avoid constraining the input coordinates. 40: -40: Setting the LD random seed to -647600329 +40: Setting the LD random seed to -1577743694 40: Generated 10 of the 10 non-bonded parameter combinations 40: Generating 1-4 interactions: fudge = 0.5 40: Generated 10 of the 10 1-4 parameter combinations @@ -48027,16 +48065,16 @@ 40: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 40: Reading frame 0 time 0.000 Last frame 0 time 0.000 40: -40: NOTE: 58 % of the run time was spent in pair search, +40: NOTE: 48 % of the run time was spent in pair search, 40: you might want to increase nstlist (this has no effect on accuracy) 40: 40: Core t (s) Wall t (s) (%) -40: Time: 0.002 0.001 193.8 +40: Time: 0.011 0.006 198.4 40: (ns/day) (hour/ns) -40: Performance: 82.211 0.292 +40: Performance: 15.522 1.546 40: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_TwoQuantumMol.edr as double precision energy file 40: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -40: [ OK ] MimicTest.TwoQuantumMol (52 ms) +40: [ OK ] MimicTest.TwoQuantumMol (74 ms) 40: [ RUN ] MimicTest.BondCuts 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_BondCuts_input.mdp, line 3]: @@ -48050,7 +48088,7 @@ 40: For a correct single-point energy evaluation with nsteps = 0, use 40: continuation = yes to avoid constraining the input coordinates. 40: -40: Setting the LD random seed to -778282246 +40: Setting the LD random seed to -835796266 40: Generated 2211 of the 2211 non-bonded parameter combinations 40: Generating 1-4 interactions: fudge = 0.5 40: Generated 2211 of the 2211 1-4 parameter combinations @@ -48085,21 +48123,21 @@ 40: Reading frames from gro file 'Alanine dipeptide in water', 23 atoms. 40: Reading frame 0 time 0.000 Last frame 0 time 0.000 40: -40: NOTE: 40 % of the run time was spent in pair search, +40: NOTE: 38 % of the run time was spent in pair search, 40: you might want to increase nstlist (this has no effect on accuracy) 40: 40: Core t (s) Wall t (s) (%) -40: Time: 0.002 0.001 194.7 +40: Time: 0.015 0.007 198.6 40: (ns/day) (hour/ns) -40: Performance: 73.254 0.328 +40: Performance: 11.822 2.030 40: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_BondCuts.edr as double precision energy file 40: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 300.368 K 40: Calculated rlist for 1x1 atom pair-list as 1.034 nm, buffer size 0.034 nm 40: Set rlist, assuming 4x4 atom pair-list, to 1.025 nm, buffer size 0.025 nm 40: Note that mdrun will redetermine rlist based on the actual pair-list setup 40: This run will generate roughly 0 Mb of data -40: [ OK ] MimicTest.BondCuts (78 ms) -40: [----------] 4 tests from MimicTest (262 ms total) +40: [ OK ] MimicTest.BondCuts (70 ms) +40: [----------] 4 tests from MimicTest (272 ms total) 40: 40: [----------] 1 test from MultiSimTerminationTest 40: [ RUN ] MultiSimTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts @@ -48115,7 +48153,7 @@ 40: scheme was introduced, but the group scheme was still the default. The 40: default is now the Verlet scheme, so you will observe different behaviour. 40: -40: Setting the LD random seed to 1025633931 +40: Setting the LD random seed to 113931682 40: Generated 279 of the 1225 non-bonded parameter combinations 40: Excluding 2 bonded neighbours molecule type 'Methanol' 40: Excluding 2 bonded neighbours molecule type 'SOL' @@ -48158,13 +48196,10 @@ 40: 40: Writing final coordinates. 40: -40: NOTE: 15 % of the run time was spent in pair search, -40: you might want to increase nstlist (this has no effect on accuracy) -40: 40: Core t (s) Wall t (s) (%) -40: Time: 0.096 0.048 199.7 +40: Time: 0.598 0.299 199.9 40: (ns/day) (hour/ns) -40: Performance: 37.830 0.634 +40: Performance: 6.070 3.954 40: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeAuto.edr as double precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies.tpr, VERSION 2019.1 (double precision) 40: Can not increase nstlist because an NVE ensemble is used @@ -48182,9 +48217,9 @@ 40: Writing final coordinates. 40: 40: Core t (s) Wall t (s) (%) -40: Time: 0.082 0.041 199.6 +40: Time: 0.415 0.208 199.9 40: (ns/day) (hour/ns) -40: Performance: 44.389 0.541 +40: Performance: 8.731 2.749 40: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpu.edr as double precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Reading file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies.tpr, VERSION 2019.1 (double precision) 40: Can not increase nstlist because an NVE ensemble is used @@ -48202,11 +48237,11 @@ 40: Writing final coordinates. 40: 40: Core t (s) Wall t (s) (%) -40: Time: 0.084 0.042 199.5 +40: Time: 0.071 0.035 199.4 40: (ns/day) (hour/ns) -40: Performance: 43.059 0.557 +40: Performance: 51.326 0.468 40: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpuTune.edr as double precision energy file -40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (279 ms) +40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (705 ms) 40: [ RUN ] PmeTest.ScalesTheBox 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBox_input.mdp, line 12]: @@ -48220,7 +48255,7 @@ 40: For a correct single-point energy evaluation with nsteps = 0, use 40: continuation = yes to avoid constraining the input coordinates. 40: -40: Setting the LD random seed to 1539160282 +40: Setting the LD random seed to -1606455199 40: Generated 279 of the 1225 non-bonded parameter combinations 40: Excluding 2 bonded neighbours molecule type 'Methanol' 40: Excluding 2 bonded neighbours molecule type 'SOL' @@ -48255,13 +48290,10 @@ 40: starting mdrun 'spc-and-methanol' 40: 0 steps, 0.0 ps. 40: -40: NOTE: 41 % of the run time was spent in pair search, -40: you might want to increase nstlist (this has no effect on accuracy) -40: 40: Core t (s) Wall t (s) (%) -40: Time: 0.022 0.011 197.7 +40: Time: 0.063 0.031 199.0 40: (ns/day) (hour/ns) -40: Performance: 7.645 3.139 +40: Performance: 2.748 8.734 40: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBox_spc-and-methanol_PmeOnCpu.edr as double precision energy file 40: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 966.269 K 40: Calculated rlist for 1x1 atom pair-list as 1.000 nm, buffer size 0.000 nm @@ -48270,8 +48302,8 @@ 40: Calculating fourier grid dimensions for X Y Z 40: Using a fourier grid of 28x28x128, spacing 0.107 0.107 0.118 40: This run will generate roughly 0 Mb of data -40: [ OK ] PmeTest.ScalesTheBox (106 ms) -40: [----------] 2 tests from PmeTest (385 ms total) +40: [ OK ] PmeTest.ScalesTheBox (122 ms) +40: [----------] 2 tests from PmeTest (828 ms total) 40: 40: [----------] 1 test from ReplicaExchangeTerminationTest 40: [ RUN ] ReplicaExchangeTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts @@ -48332,7 +48364,7 @@ 40: Norm of force = 8.77219867200401e+01 40: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_0_minimize.edr as double precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 (401 ms) +40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 (446 ms) 40: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_1_input.mdp, line 28]: @@ -48389,7 +48421,7 @@ 40: Norm of force = 1.84530029788115e+02 40: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_1_minimize.edr as double precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 (391 ms) +40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 (423 ms) 40: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_2_input.mdp, line 28]: @@ -48444,7 +48476,7 @@ 40: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_2_minimize.edr as double precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 turning H bonds into constraints... 40: This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 (155 ms) +40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 (161 ms) 40: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_3_input.mdp, line 28]: @@ -48506,7 +48538,7 @@ 40: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_3_minimize.edr as double precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 turning H bonds into constraints... 40: This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 (156 ms) +40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 (152 ms) 40: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_4_input.mdp, line 28]: @@ -48571,7 +48603,7 @@ 40: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_4_minimize.edr as double precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 3.000 Last energy frame read 2 time 3.000 turning all bonds into constraints... 40: This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 (24 ms) +40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 (27 ms) 40: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_5_input.mdp, line 28]: @@ -48643,8 +48675,8 @@ 40: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_5_minimize.edr as double precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 turning all bonds into constraints... 40: This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 (28 ms) -40: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest (1156 ms total) +40: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 (30 ms) +40: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest (1239 ms total) 40: 40: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest 40: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 @@ -48689,7 +48721,7 @@ 40: Norm of force = 1.63839399694378e+00 40: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_0_minimize.edr as double precision energy file 40: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 (18 ms) +40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 (17 ms) 40: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_1_input.mdp, line 28]: @@ -48735,7 +48767,7 @@ 40: Norm of force = 1.05251679559258e+00 40: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_1_minimize.edr as double precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Last energy frame read 1 time 0.000 This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 (12 ms) +40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 (16 ms) 40: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_2_input.mdp, line 28]: @@ -48791,7 +48823,7 @@ 40: Norm of force = 1.05251679559258e+00 40: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_2_minimize.edr as double precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Last energy frame read 1 time 0.000 This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 (14 ms) +40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 (12 ms) 40: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_3_input.mdp, line 28]: @@ -48845,7 +48877,7 @@ 40: Norm of force = 4.62274878672162e+03 40: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_3_minimize.edr as double precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 (159 ms) +40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 (165 ms) 40: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_4_input.mdp, line 28]: @@ -48902,7 +48934,7 @@ 40: Norm of force = 3.61390332570590e+03 40: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_4_minimize.edr as double precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 (147 ms) +40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 (168 ms) 40: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 40: 40: NOTE 1 [file /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_5_input.mdp, line 28]: @@ -48969,27 +49001,27 @@ 40: Norm of force = 1.01988549359680e+04 40: Opened /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_5_minimize.edr as double precision energy file 40: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 (144 ms) -40: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest (494 ms total) +40: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 (161 ms) +40: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest (540 ms total) 40: 40: [----------] Global test environment tear-down -40: [==========] 21 tests from 7 test cases ran. (2365 ms total) +40: [==========] 21 tests from 7 test cases ran. (2962 ms total) 40: [ PASSED ] 21 tests. 40: 40: YOU HAVE 4 DISABLED TESTS 40: -40/40 Test #40: MdrunMpiTests .................... Passed 2.40 sec +40/40 Test #40: MdrunMpiTests .................... Passed 3.00 sec 100% tests passed, 0 tests failed out of 40 Label Time Summary: -GTest = 55.85 sec*proc (40 tests) -IntegrationTest = 17.94 sec*proc (5 tests) -MpiTest = 0.82 sec*proc (3 tests) -SlowTest = 31.02 sec*proc (1 test) -UnitTest = 6.90 sec*proc (34 tests) +GTest = 55.60 sec*proc (40 tests) +IntegrationTest = 18.63 sec*proc (5 tests) +MpiTest = 0.48 sec*proc (3 tests) +SlowTest = 30.70 sec*proc (1 test) +UnitTest = 6.27 sec*proc (34 tests) -Total Test time (real) = 55.93 sec +Total Test time (real) = 55.68 sec touch build-basic dh_testdir /usr/bin/make -j8 -C build/mpich @@ -49005,47 +49037,59 @@ make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs /build/gromacs-2019.1/build/mpich/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs /build/gromacs-2019.1/build/mpich/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs /build/gromacs-2019.1/build/mpich/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend -Scanning dependencies of target lmfit_objlib make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/programs /build/gromacs-2019.1/build/mpich/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +Scanning dependencies of target lmfit_objlib make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/gromacs-2019.1/src/external/lmfit/lmmin.cpp -Scanning dependencies of target tng_io_obj Scanning dependencies of target mdrun_objlib +Scanning dependencies of target libgromacs_external make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/bwlzh.c +cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/eigensolver.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/gmx_arpack.cpp make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/mdrun.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/bwt.c -cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/coder.c -cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/dict.c -Scanning dependencies of target libgromacs_external +cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/matrix.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/nrjac.cpp +Scanning dependencies of target tng_io_obj make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/eigensolver.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/bwlzh.c Scanning dependencies of target libgromacs_generated make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/sparsematrix.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/errhandler.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/bwt.c +cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/tmpi_malloc.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/atomic.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/lock.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/pthreads.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/system_error.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/coder.c +cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/dict.c +make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/fixpoint.c +[ 0%] Built target mdrun_objlib cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/huffman.c -cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/gmx_arpack.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/huffmem.c -cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/lz77.c cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/merge_sort.c cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/mtf.c @@ -49054,30 +49098,29 @@ cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/vals16.c cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/warnmalloc.c cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/widemuldiv.c -cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/xtc2.c +cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/xtc3.c -make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' -[ 0%] Built target mdrun_objlib cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c -cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/lib/md5.c -cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/lib/md5.c cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp +make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' +[ 1%] Built target lmfit_objlib cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp +make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' +[ 2%] Built target libgromacs_external cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp -make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' -[ 1%] Built target lmfit_objlib cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp @@ -49086,7 +49129,6 @@ cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/matrix.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp @@ -49094,7 +49136,6 @@ cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/nrjac.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp @@ -49103,18 +49144,13 @@ cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/sparsematrix.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/errhandler.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/tmpi_malloc.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/atomic.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/lock.cpp /build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c: In function 'tng_time_get_str': /build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c:15188:24: warning: '%02d' directive output may be truncated writing between 2 and 11 bytes into a region of size between 0 and 16 [-Wformat-truncation=] "%4d-%02d-%02d %02d:%02d:%02d", @@ -49128,26 +49164,22 @@ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/pthreads.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/system_error.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp -make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' -[ 2%] Built target libgromacs_external cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp +make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' +[ 5%] Built target tng_io_obj cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp -make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' -[ 5%] Built target tng_io_obj cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp @@ -49798,92 +49830,92 @@ make[2]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend -make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' -cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs /build/gromacs-2019.1/build/mpich-dp/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs /build/gromacs-2019.1/build/mpich-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' +cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs /build/gromacs-2019.1/build/mpich-dp/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs /build/gromacs-2019.1/build/mpich-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/programs /build/gromacs-2019.1/build/mpich-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs /build/gromacs-2019.1/build/mpich-dp/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= -Scanning dependencies of target lmfit_objlib -make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build -make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/gromacs-2019.1/src/external/lmfit/lmmin.cpp Scanning dependencies of target mdrun_objlib make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +Scanning dependencies of target lmfit_objlib +Scanning dependencies of target libgromacs_external make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/mdrun.cpp -Scanning dependencies of target libgromacs_external make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' Scanning dependencies of target tng_io_obj +make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' +make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/gromacs-2019.1/src/external/lmfit/lmmin.cpp +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/eigensolver.cpp -make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/gmx_arpack.cpp make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/bwlzh.c -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/matrix.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/nrjac.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/gmx_arpack.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/bwt.c +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/coder.c Scanning dependencies of target libgromacs_generated make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/sparsematrix.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/bwt.c -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/errhandler.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/tmpi_malloc.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/atomic.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/lock.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/pthreads.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/system_error.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/coder.c +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/matrix.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/dict.c -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/nrjac.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/fixpoint.c cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/huffman.c cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/huffmem.c +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/sparsematrix.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/lz77.c cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/merge_sort.c make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' [ 0%] Built target mdrun_objlib cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/mtf.c +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/errhandler.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/tmpi_malloc.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/rle.c +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/atomic.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/lock.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/tng_compress.c cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/vals16.c +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/pthreads.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/warnmalloc.c cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/widemuldiv.c +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/system_error.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/xtc2.c cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/xtc3.c -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/lib/md5.c cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/mpich-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/lib/md5.c cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp -make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -[ 1%] Built target lmfit_objlib cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp +make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' +[ 1%] Built target lmfit_objlib cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' @@ -49923,9 +49955,6 @@ cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp /build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c: In function 'tng_time_get_str': /build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c:15188:24: warning: '%02d' directive output may be truncated writing between 2 and 11 bytes into a region of size between 0 and 16 [-Wformat-truncation=] "%4d-%02d-%02d %02d:%02d:%02d", @@ -49938,6 +49967,9 @@ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp @@ -49947,11 +49979,11 @@ cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp +make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' +[ 5%] Built target tng_io_obj cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp -make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -[ 5%] Built target tng_io_obj cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp @@ -50611,17 +50643,23 @@ /usr/bin/make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs /build/gromacs-2019.1/build/mpich/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/external/googletest /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/external/googletest /build/gromacs-2019.1/build/mpich/src/external/googletest/CMakeFiles/gmock.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs /build/gromacs-2019.1/build/mpich/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/external/googletest /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/external/googletest /build/gromacs-2019.1/build/mpich/src/external/googletest/CMakeFiles/gmock.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' +make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' +make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' +cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs /build/gromacs-2019.1/build/mpich/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= +[ 1%] Built target lmfit_objlib +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build @@ -50631,29 +50669,23 @@ make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' +Scanning dependencies of target onlinehelp-test-shared make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' +cd /build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/mock_helptopic.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build Scanning dependencies of target gmock -[ 2%] Built target tng_io_obj -[ 3%] Built target libgromacs_external +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build +[ 3%] Built target tng_io_obj make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -Scanning dependencies of target onlinehelp-test-shared +[ 4%] Built target libgromacs_external /usr/bin/make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/external/googletest && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googlemock -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/googletest/googletest -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o -c /build/gromacs-2019.1/src/external/googletest/googlemock/src/gmock-all.cc -cd /build/gromacs-2019.1/build/mpich/src/external/googletest && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googlemock -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/googletest/googletest -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o -c /build/gromacs-2019.1/src/external/googletest/googletest/src/gtest-all.cc Scanning dependencies of target mdrunutility-test-shared +cd /build/gromacs-2019.1/build/mpich/src/external/googletest && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googlemock -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/googletest/googletest -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o -c /build/gromacs-2019.1/src/external/googletest/googletest/src/gtest-all.cc make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build -[ 4%] Built target lmfit_objlib -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/mock_helptopic.cpp /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp @@ -50671,9 +50703,9 @@ make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' [ 79%] Built target libgromacs make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -[ 79%] Built target onlinehelp-test-shared -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' [ 80%] Built target mdrunutility-test-shared +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' +[ 80%] Built target onlinehelp-test-shared cd /build/gromacs-2019.1/build/mpich/src/external/googletest && /usr/bin/cmake -P CMakeFiles/gmock.dir/cmake_clean_target.cmake cd /build/gromacs-2019.1/build/mpich/src/external/googletest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/libgmock.a CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o @@ -50714,77 +50746,80 @@ make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' [ 83%] Built target testutils /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/compat/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/compat/tests /build/gromacs-2019.1/build/mpich/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/testutils/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/testutils/tests /build/gromacs-2019.1/build/mpich/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/testutils/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/testutils/tests /build/gromacs-2019.1/build/mpich/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend -/usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdlib/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests /build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/applied-forces/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/applied-forces/tests /build/gromacs-2019.1/build/mpich/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/listed-forces/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/listed-forces/tests /build/gromacs-2019.1/build/mpich/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend +Scanning dependencies of target compat-test make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/commandline/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests /build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' +/usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/domdec/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/domdec/tests /build/gromacs-2019.1/build/mpich/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= -Scanning dependencies of target testutils-test -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/interactivetest.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/make_unique.cpp.o -c /build/gromacs-2019.1/src/gromacs/compat/tests/make_unique.cpp +Scanning dependencies of target testutils-test Scanning dependencies of target testutils-mpi-test -Scanning dependencies of target compat-test make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -/usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/make_unique.cpp.o -c /build/gromacs-2019.1/src/gromacs/compat/tests/make_unique.cpp /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/mpitest.cpp -Scanning dependencies of target listed-forces-test -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -/usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build -Scanning dependencies of target applied-forces-test +cd /build/gromacs-2019.1/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/interactivetest.cpp make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich/src/gromacs/listed-forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/bonded.cpp.o -c /build/gromacs-2019.1/src/gromacs/listed-forces/tests/bonded.cpp -Scanning dependencies of target mdlib-test -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build +cd /build/gromacs-2019.1/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/mpitest.cpp Scanning dependencies of target domdec-test -Scanning dependencies of target commandline-test make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' +/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' +cd /build/gromacs-2019.1/build/mpich/src/gromacs/domdec/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /build/gromacs-2019.1/src/gromacs/domdec/tests/hashedmap.cpp +Scanning dependencies of target applied-forces-test make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' /usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build +Scanning dependencies of target listed-forces-test make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -/usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build +/usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs/applied-forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/electricfield.cpp.o -c /build/gromacs-2019.1/src/gromacs/applied-forces/tests/electricfield.cpp make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/calc_verletbuf.cpp -/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build +cd /build/gromacs-2019.1/build/mpich/src/gromacs/listed-forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/bonded.cpp.o -c /build/gromacs-2019.1/src/gromacs/listed-forces/tests/bonded.cpp +Scanning dependencies of target commandline-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' +/usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build +Scanning dependencies of target mdlib-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' +/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich/src/gromacs/domdec/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /build/gromacs-2019.1/src/gromacs/domdec/tests/hashedmap.cpp -cd /build/gromacs-2019.1/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/calc_verletbuf.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /build/gromacs-2019.1/src/gromacs/compat/tests/pointers.cpp +cd /build/gromacs-2019.1/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/listed-forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/mpich/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich/src/gromacs/listed-forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/mdebin.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/mdebin.cpp +cd /build/gromacs-2019.1/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/refdata_tests.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/listed-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed-forces-test.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' [ 83%] Built target testutils-mpi-test +/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/listed-forces-test.dir/bonded.cpp.o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread /usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/ewald/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests /build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= @@ -50794,15 +50829,11 @@ make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmebsplinetest.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/listed-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed-forces-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/listed-forces-test.dir/bonded.cpp.o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread cd /build/gromacs-2019.1/build/mpich/src/gromacs/domdec/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/domdec/tests/localatomsetmanager.cpp -cd /build/gromacs-2019.1/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/refdata_tests.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/applied-forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/compat-test.dir/make_unique.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich/src/gromacs/applied-forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/settle.cpp [ 84%] Built target compat-test /usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' @@ -50812,6 +50843,7 @@ /usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs/fft/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/fft/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/fft.cpp.o -c /build/gromacs-2019.1/src/gromacs/fft/tests/fft.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/settle.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/applied-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied-forces-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/applied-forces-test.dir/electricfield.cpp.o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' @@ -50841,16 +50873,6 @@ /usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' [ 84%] Built target domdec-test -cd /build/gromacs-2019.1/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/testasserts_tests.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmegathertest.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/fft/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/fft/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/xvgtest_tests.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/hardware/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -[ 85%] Built target fft-test /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/math/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/math/tests /build/gromacs-2019.1/build/mpich/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= @@ -50859,12 +50881,15 @@ /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/arrayrefwithpadding.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/shake.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmegathertest.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/fft/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/fft/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/testasserts_tests.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/hardware/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -[ 85%] Built target hardware-test +[ 85%] Built target fft-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= @@ -50873,9 +50898,11 @@ /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinity.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/shake.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' +[ 85%] Built target hardware-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= @@ -50884,6 +50911,12 @@ /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinity-mpi.cpp +cd /build/gromacs-2019.1/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/xvgtest_tests.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/dofit.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/dofit.cpp +cd /build/gromacs-2019.1/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp +cd /build/gromacs-2019.1/build/mpich/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' [ 86%] Built target testutils-test /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend @@ -50894,13 +50927,14 @@ /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpformat.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpmanager.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/functions.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/functions.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmesolvetest.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/dofit.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/dofit.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/simulationsignal.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpmanager.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' [ 86%] Built target mdrunutility-test /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend @@ -50911,9 +50945,6 @@ /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/abstractoptionstorage.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/functions.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/functions.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpwritercontext.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' @@ -50927,12 +50958,20 @@ make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/exponentialdistribution.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/updategroups.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/invertmatrix.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlineparser.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpwritercontext.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/devicetransfers.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/gammadistribution.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/updategroupscog.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/paddedvector.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmesplinespreadtest.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -[ 87%] Built target onlinehelp-test +[ 86%] Built target gpu_utils-test /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/restraint/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/restraint/tests /build/gromacs-2019.1/build/mpich/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake --color= @@ -50941,19 +50980,10 @@ /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs/restraint/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /build/gromacs-2019.1/src/gromacs/restraint/tests/manager.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/devicetransfers.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/updategroupscog.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmesplinespreadtest.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/gammadistribution.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/invertmatrix.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/restraint/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -[ 87%] Built target gpu_utils-test +[ 87%] Built target onlinehelp-test /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/tables/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/tables/tests /build/gromacs-2019.1/build/mpich/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= @@ -50962,6 +50992,15 @@ /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs/tables/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/tables/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /build/gromacs-2019.1/src/gromacs/tables/tests/splinetable.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/restraint/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/mdebin.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/filenameoption.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/normaldistribution.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' [ 88%] Built target restraintpotential-test /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend @@ -50972,68 +51011,53 @@ /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /build/gromacs-2019.1/src/gromacs/taskassignment/tests/usergpuids.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/paddedvector.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/mdebin.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/filenameoption.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/normaldistribution.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' [ 89%] Built target mdlib-test /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/utility/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/pargs.cpp Scanning dependencies of target utility-mpi-test make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/physicalnodecommunicator-mpi.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/pargs.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/seed.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/seed.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmetestcommon.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/filenameoptionmanager.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/seed.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/seed.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' [ 90%] Built target utility-mpi-test /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/utility/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= +Scanning dependencies of target utility-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' +/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' +cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/alignedallocator.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/tabulatednormaldistribution.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/testhardwarecontexts.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' [ 91%] Built target taskassignment-test /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/fileio/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/fileio/tests /build/gromacs-2019.1/build/mpich/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= -Scanning dependencies of target utility-test -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build Scanning dependencies of target fileio-test make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/alignedallocator.cpp -make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/confio.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/tabulatednormaldistribution.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/testhardwarecontexts.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/filemd5.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' [ 92%] Built target commandline-test -cd /build/gromacs-2019.1/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/threefry.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/readinp.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -[ 93%] Built target ewald-test /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/pulling/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/pulling/tests /build/gromacs-2019.1/build/mpich/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= @@ -51042,17 +51066,13 @@ /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs/pulling/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/pull.cpp.o -c /build/gromacs-2019.1/src/gromacs/pulling/tests/pull.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/option.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/option.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformintdistribution.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/tables/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/tables/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/optionsassigner.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/arrayref.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread cd /build/gromacs-2019.1/build/mpich/src/gromacs/pulling/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/tngio.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/filemd5.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -[ 93%] Built target table-test +[ 93%] Built target ewald-test /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/awh/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/awh/tests /build/gromacs-2019.1/build/mpich/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= @@ -51061,85 +51081,97 @@ /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/bias.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/bias.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/option.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/option.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/threefry.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/optionsassigner.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' [ 93%] Built target pull-test /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/simd/tests /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= -cd /build/gromacs-2019.1/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformrealdistribution.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/vectypes.cpp Scanning dependencies of target simd-test make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/bootstrap_loadstore.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/tables/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/tables/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/readinp.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/arrayref.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' +[ 93%] Built target table-test +cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask32.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/base.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/base.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/tngio.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformintdistribution.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/vectypes.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/biasstate.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/base.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/base.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask64.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' +[ 93%] Built target math-test +cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask128.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' [ 93%] Built target fileio-test -cd /build/gromacs-2019.1/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/biasstate.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/keyvaluetreeserializer.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformrealdistribution.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_floatingpoint.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/grid.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/grid.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/keyvaluetreetransform.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/gmxregex.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/gmxregex.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/logger.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/logger.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/repeatingsection.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread cd /build/gromacs-2019.1/build/mpich/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/mutex.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' +[ 93%] Built target awh-test +cd /build/gromacs-2019.1/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/timeunitmanager.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' [ 94%] Built target random-test -cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_floatingpoint.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/treesupport.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/path.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/path.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_floatingpoint_util.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/grid.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/grid.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/physicalnodecommunicator.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/stringutil.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/textreader.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/textwriter.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/typetraits.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_vector_operations.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -[ 94%] Built target math-test cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_math.cpp +cd /build/gromacs-2019.1/build/mpich/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_memory.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_integer.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/repeatingsection.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -[ 94%] Built target awh-test -cd /build/gromacs-2019.1/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/timeunitmanager.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' +[ 95%] Built target options-test cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4_floatingpoint.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4_vector_operations.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4_math.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/treesupport.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/scalar.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/scalar_util.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/scalar_math.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask32.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask64.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask128.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/keyvaluetreeserializer.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/keyvaluetreetransform.cpp cd /build/gromacs-2019.1/build/mpich/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -[ 96%] Built target simd-test -cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/gmxregex.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/gmxregex.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/logger.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/logger.cpp -[ 97%] Built target options-test -cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/mutex.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/path.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/path.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/physicalnodecommunicator.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/stringutil.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/textreader.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/textwriter.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/typetraits.cpp -cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +[ 97%] Built target simd-test cd /build/gromacs-2019.1/build/mpich/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/gmxregex.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich' @@ -51189,16 +51221,16 @@ 1: [ RUN ] InteractiveTestHelperTest.DetectsIncorrectOutput 1: [ OK ] InteractiveTestHelperTest.DetectsIncorrectOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingOutput -1: [ OK ] InteractiveTestHelperTest.DetectsMissingOutput (1 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsMissingOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingFinalOutput -1: [ OK ] InteractiveTestHelperTest.DetectsMissingFinalOutput (0 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsMissingFinalOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraOutput -1: [ OK ] InteractiveTestHelperTest.DetectsExtraOutput (1 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsExtraOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingInput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingInput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraInput 1: [ OK ] InteractiveTestHelperTest.DetectsExtraInput (1 ms) -1: [----------] 10 tests from InteractiveTestHelperTest (6 ms total) +1: [----------] 10 tests from InteractiveTestHelperTest (5 ms total) 1: 1: [----------] 34 tests from ReferenceDataTest 1: [ RUN ] ReferenceDataTest.HandlesSimpleData @@ -51206,9 +51238,9 @@ 1: [ RUN ] ReferenceDataTest.HandlesFloatingPointData 1: [ OK ] ReferenceDataTest.HandlesFloatingPointData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesPresenceChecks -1: [ OK ] ReferenceDataTest.HandlesPresenceChecks (0 ms) +1: [ OK ] ReferenceDataTest.HandlesPresenceChecks (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesStringBlockData -1: [ OK ] ReferenceDataTest.HandlesStringBlockData (1 ms) +1: [ OK ] ReferenceDataTest.HandlesStringBlockData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVectorData 1: [ OK ] ReferenceDataTest.HandlesVectorData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceData @@ -51218,37 +51250,37 @@ 1: [ RUN ] ReferenceDataTest.HandlesIncorrectData 1: [ OK ] ReferenceDataTest.HandlesIncorrectData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectDataType -1: [ OK ] ReferenceDataTest.HandlesIncorrectDataType (1 ms) +1: [ OK ] ReferenceDataTest.HandlesIncorrectDataType (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingData 1: [ OK ] ReferenceDataTest.HandlesMissingData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedData 1: [ OK ] ReferenceDataTest.HandlesUncheckedData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInSequence -1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInSequence (1 ms) +1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInSequence (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInCompound -1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInCompound (0 ms) +1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInCompound (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariants 1: [ OK ] ReferenceDataTest.HandlesVariants (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTree -1: [ OK ] ReferenceDataTest.HandlesKeyValueTree (1 ms) +1: [ OK ] ReferenceDataTest.HandlesKeyValueTree (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeExtraKey 1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeExtraKey (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeMissingKey -1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeMissingKey (0 ms) +1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeMissingKey (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectValue -1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectValue (1 ms) +1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectValue (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectType 1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectType (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingReferenceDataFile 1: [ OK ] ReferenceDataTest.HandlesMissingReferenceDataFile (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSpecialCharactersInStrings -1: [ OK ] ReferenceDataTest.HandlesSpecialCharactersInStrings (1 ms) +1: [ OK ] ReferenceDataTest.HandlesSpecialCharactersInStrings (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace 1: [ OK ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmptyStrings 1: [ OK ] ReferenceDataTest.HandlesEmptyStrings (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock -1: [ OK ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock (1 ms) +1: [ OK ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceItemIndices 1: [ OK ] ReferenceDataTest.HandlesSequenceItemIndices (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData @@ -51256,20 +51288,20 @@ 1: [ RUN ] ReferenceDataTest.HandlesMultipleNullIds 1: [ OK ] ReferenceDataTest.HandlesMultipleNullIds (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds -1: [ OK ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds (1 ms) +1: [ OK ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesReadingValues 1: [ OK ] ReferenceDataTest.HandlesReadingValues (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges (0 ms) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges (1 ms) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (0 ms) -1: [----------] 34 tests from ReferenceDataTest (16 ms total) +1: [----------] 34 tests from ReferenceDataTest (10 ms total) 1: 1: [----------] 7 tests from FloatingPointDifferenceTest 1: [ RUN ] FloatingPointDifferenceTest.HandlesEqualValues @@ -51305,15 +51337,15 @@ 1: [ RUN ] XvgTests.CheckMissing 1: [ OK ] XvgTests.CheckMissing (0 ms) 1: [ RUN ] XvgTests.CheckExtra -1: [ OK ] XvgTests.CheckExtra (0 ms) +1: [ OK ] XvgTests.CheckExtra (1 ms) 1: [ RUN ] XvgTests.ReadIncorrect -1: [ OK ] XvgTests.ReadIncorrect (1 ms) -1: [----------] 4 tests from XvgTests (3 ms total) +1: [ OK ] XvgTests.ReadIncorrect (0 ms) +1: [----------] 4 tests from XvgTests (2 ms total) 1: 1: [----------] Global test environment tear-down -1: [==========] 59 tests from 5 test cases ran. (25 ms total) +1: [==========] 59 tests from 5 test cases ran. (18 ms total) 1: [ PASSED ] 59 tests. - 1/27 Test #1: TestUtilsUnitTests ............... Passed 0.08 sec + 1/27 Test #1: TestUtilsUnitTests ............... Passed 0.04 sec test 2 Start 2: TestUtilsMpiUnitTests @@ -51323,13 +51355,13 @@ 2: [----------] Global test environment set-up. 2: [----------] 1 test from MpiSelfTest 2: [ RUN ] MpiSelfTest.Runs -2: [ OK ] MpiSelfTest.Runs (0 ms) -2: [----------] 1 test from MpiSelfTest (0 ms total) +2: [ OK ] MpiSelfTest.Runs (1 ms) +2: [----------] 1 test from MpiSelfTest (1 ms total) 2: 2: [----------] Global test environment tear-down -2: [==========] 1 test from 1 test case ran. (0 ms total) +2: [==========] 1 test from 1 test case ran. (1 ms total) 2: [ PASSED ] 1 test. - 2/27 Test #2: TestUtilsMpiUnitTests ............ Passed 0.05 sec + 2/27 Test #2: TestUtilsMpiUnitTests ............ Passed 0.04 sec test 3 Start 3: MdlibUnitTest @@ -51346,9 +51378,9 @@ 3: [ RUN ] PrintEbin.print_ebin_HandlesEmptyAverages 3: [ OK ] PrintEbin.print_ebin_HandlesEmptyAverages (0 ms) 3: [ RUN ] PrintEbin.pr_ebin_HandlesAverages -3: [ OK ] PrintEbin.pr_ebin_HandlesAverages (1 ms) +3: [ OK ] PrintEbin.pr_ebin_HandlesAverages (0 ms) 3: [ RUN ] PrintEbin.pr_ebin_HandlesEmptyAverages -3: [ OK ] PrintEbin.pr_ebin_HandlesEmptyAverages (0 ms) +3: [ OK ] PrintEbin.pr_ebin_HandlesEmptyAverages (1 ms) 3: [----------] 3 tests from PrintEbin (1 ms total) 3: 3: [----------] 4 tests from ShakeTest @@ -51403,7 +51435,7 @@ 3: [ OK ] UpdateGroups.waterFlexAngle (0 ms) 3: [ RUN ] UpdateGroups.twoMoltypes 3: [ OK ] UpdateGroups.twoMoltypes (0 ms) -3: [----------] 9 tests from UpdateGroups (1 ms total) +3: [----------] 9 tests from UpdateGroups (0 ms total) 3: 3: [----------] 1 test from UpdateGroupsCog 3: [ RUN ] UpdateGroupsCog.ComputesCogs @@ -51444,7 +51476,7 @@ 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/15 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/15 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/16 -3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/16 (1 ms) +3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/16 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/17 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/17 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/18 @@ -51462,9 +51494,9 @@ 3: [----------] 24 tests from WithParameters/SettleTest (1 ms total) 3: 3: [----------] Global test environment tear-down -3: [==========] 50 tests from 8 test cases ran. (4 ms total) +3: [==========] 50 tests from 8 test cases ran. (3 ms total) 3: [ PASSED ] 50 tests. - 3/27 Test #3: MdlibUnitTest .................... Passed 0.06 sec + 3/27 Test #3: MdlibUnitTest .................... Passed 0.03 sec test 4 Start 4: AppliedForcesUnitTest @@ -51474,17 +51506,17 @@ 4: [----------] Global test environment set-up. 4: [----------] 3 tests from ElectricFieldTest 4: [ RUN ] ElectricFieldTest.Static -4: [ OK ] ElectricFieldTest.Static (1 ms) +4: [ OK ] ElectricFieldTest.Static (0 ms) 4: [ RUN ] ElectricFieldTest.Oscillating 4: [ OK ] ElectricFieldTest.Oscillating (0 ms) 4: [ RUN ] ElectricFieldTest.Pulsed 4: [ OK ] ElectricFieldTest.Pulsed (0 ms) -4: [----------] 3 tests from ElectricFieldTest (1 ms total) +4: [----------] 3 tests from ElectricFieldTest (0 ms total) 4: 4: [----------] Global test environment tear-down -4: [==========] 3 tests from 1 test case ran. (1 ms total) +4: [==========] 3 tests from 1 test case ran. (0 ms total) 4: [ PASSED ] 3 tests. - 4/27 Test #4: AppliedForcesUnitTest ............ Passed 0.04 sec + 4/27 Test #4: AppliedForcesUnitTest ............ Passed 0.02 sec test 5 Start 5: ListedForcesTest @@ -51502,9 +51534,9 @@ 5: [ RUN ] BondedTest.DihedralAnglePbcNone 5: [ OK ] BondedTest.DihedralAnglePbcNone (0 ms) 5: [ RUN ] BondedTest.DihedralAnglePbcXy -5: [ OK ] BondedTest.DihedralAnglePbcXy (1 ms) +5: [ OK ] BondedTest.DihedralAnglePbcXy (0 ms) 5: [ RUN ] BondedTest.DihedralAnglePbcXyz -5: [ OK ] BondedTest.DihedralAnglePbcXyz (0 ms) +5: [ OK ] BondedTest.DihedralAnglePbcXyz (1 ms) 5: [ RUN ] BondedTest.IfuncBondsPbcNo 5: [ OK ] BondedTest.IfuncBondsPbcNo (0 ms) 5: [ RUN ] BondedTest.IfuncBondsPbcXy @@ -51514,7 +51546,7 @@ 5: [ RUN ] BondedTest.IfuncAnglesPbcNo 5: [ OK ] BondedTest.IfuncAnglesPbcNo (0 ms) 5: [ RUN ] BondedTest.IfuncAnglesPbcXy -5: [ OK ] BondedTest.IfuncAnglesPbcXy (1 ms) +5: [ OK ] BondedTest.IfuncAnglesPbcXy (0 ms) 5: [ RUN ] BondedTest.IfuncAnglesPbcXYZ 5: [ OK ] BondedTest.IfuncAnglesPbcXYZ (0 ms) 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcNo @@ -51523,12 +51555,12 @@ 5: [ OK ] BondedTest.IfuncProperDihedralsPbcXy (0 ms) 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcXyz 5: [ OK ] BondedTest.IfuncProperDihedralsPbcXyz (0 ms) -5: [----------] 15 tests from BondedTest (2 ms total) +5: [----------] 15 tests from BondedTest (1 ms total) 5: 5: [----------] Global test environment tear-down -5: [==========] 15 tests from 1 test case ran. (2 ms total) +5: [==========] 15 tests from 1 test case ran. (1 ms total) 5: [ PASSED ] 15 tests. - 5/27 Test #5: ListedForcesTest ................. Passed 0.04 sec + 5/27 Test #5: ListedForcesTest ................. Passed 0.03 sec test 6 Start 6: CommandLineUnitTests @@ -51540,10 +51572,10 @@ 6: [ RUN ] CommandLineHelpModuleTest.PrintsGeneralHelp 6: [ OK ] CommandLineHelpModuleTest.PrintsGeneralHelp (1 ms) 6: [ RUN ] CommandLineHelpModuleTest.PrintsHelpOnTopic -6: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (1 ms) +6: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (0 ms) 6: [ RUN ] CommandLineHelpModuleTest.ExportsHelp 6: [ OK ] CommandLineHelpModuleTest.ExportsHelp (1 ms) -6: [----------] 3 tests from CommandLineHelpModuleTest (3 ms total) +6: [----------] 3 tests from CommandLineHelpModuleTest (2 ms total) 6: 6: [----------] 6 tests from CommandLineHelpWriterTest 6: [ RUN ] CommandLineHelpWriterTest.HandlesOptionTypes @@ -51551,9 +51583,9 @@ 6: [ RUN ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables 6: [ OK ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesLongFileOptions -6: [ OK ] CommandLineHelpWriterTest.HandlesLongFileOptions (1 ms) +6: [ OK ] CommandLineHelpWriterTest.HandlesLongFileOptions (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesLongOptions -6: [ OK ] CommandLineHelpWriterTest.HandlesLongOptions (0 ms) +6: [ OK ] CommandLineHelpWriterTest.HandlesLongOptions (1 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesOptionGroups 6: [ OK ] CommandLineHelpWriterTest.HandlesOptionGroups (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesHelpText @@ -51562,18 +51594,18 @@ 6: 6: [----------] 6 tests from CommandLineModuleManagerTest 6: [ RUN ] CommandLineModuleManagerTest.RunsModule -6: [ OK ] CommandLineModuleManagerTest.RunsModule (5 ms) +6: [ OK ] CommandLineModuleManagerTest.RunsModule (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelp -6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelp (0 ms) +6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelp (1 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet -6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet (1 ms) +6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames 6: [ OK ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames (0 ms) -6: [----------] 6 tests from CommandLineModuleManagerTest (6 ms total) +6: [----------] 6 tests from CommandLineModuleManagerTest (1 ms total) 6: 6: [----------] 13 tests from CommandLineParserTest 6: [ RUN ] CommandLineParserTest.HandlesSingleValues @@ -51581,9 +51613,9 @@ 6: [ RUN ] CommandLineParserTest.HandlesBooleanWithoutArgument 6: [ OK ] CommandLineParserTest.HandlesBooleanWithoutArgument (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesBooleanAsNoWithoutArgument -6: [ OK ] CommandLineParserTest.HandlesBooleanAsNoWithoutArgument (1 ms) +6: [ OK ] CommandLineParserTest.HandlesBooleanAsNoWithoutArgument (0 ms) 6: [ RUN ] CommandLineParserTest.ThrowsWithBooleanAsNoWithArgument -6: [ OK ] CommandLineParserTest.ThrowsWithBooleanAsNoWithArgument (0 ms) +6: [ OK ] CommandLineParserTest.ThrowsWithBooleanAsNoWithArgument (1 ms) 6: [ RUN ] CommandLineParserTest.HandlesNegativeNumbers 6: [ OK ] CommandLineParserTest.HandlesNegativeNumbers (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesString @@ -51601,8 +51633,8 @@ 6: [ RUN ] CommandLineParserTest.CanAllowPositionalArguments 6: [ OK ] CommandLineParserTest.CanAllowPositionalArguments (0 ms) 6: [ RUN ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions -6: [ OK ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions (1 ms) -6: [----------] 13 tests from CommandLineParserTest (2 ms total) +6: [ OK ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions (0 ms) +6: [----------] 13 tests from CommandLineParserTest (1 ms total) 6: 6: [----------] 6 tests from CommandLineProgramContextTest 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithAbsolutePath @@ -51610,14 +51642,14 @@ 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithRelativePath 6: [ OK ] CommandLineProgramContextTest.FindsBinaryWithRelativePath (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromPath -6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromPath (0 ms) +6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromPath (1 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromCurrentDirectory 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromCurrentDirectory (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink (0 ms) -6: [----------] 6 tests from CommandLineProgramContextTest (0 ms total) +6: [----------] 6 tests from CommandLineProgramContextTest (1 ms total) 6: 6: [----------] 21 tests from ParseCommonArgsTest 6: [ RUN ] ParseCommonArgsTest.ParsesIntegerArgs @@ -51627,7 +51659,7 @@ 6: [ RUN ] ParseCommonArgsTest.ParsesRealArgs 6: [ OK ] ParseCommonArgsTest.ParsesRealArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesStringArgs -6: [ OK ] ParseCommonArgsTest.ParsesStringArgs (1 ms) +6: [ OK ] ParseCommonArgsTest.ParsesStringArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesBooleanArgs 6: [ OK ] ParseCommonArgsTest.ParsesBooleanArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesVectorArgs @@ -51641,7 +51673,7 @@ 6: [ RUN ] ParseCommonArgsTest.ParsesFileArgs 6: [ OK ] ParseCommonArgsTest.ParsesFileArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesFileArgsWithDefaults -6: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaults (1 ms) +6: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaults (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName 6: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension @@ -51653,21 +51685,21 @@ 6: [ RUN ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified 6: [ OK ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified (0 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesCompressedFiles -6: [ OK ] ParseCommonArgsTest.HandlesCompressedFiles (1 ms) +6: [ OK ] ParseCommonArgsTest.HandlesCompressedFiles (0 ms) 6: [ RUN ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension -6: [ OK ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension (0 ms) +6: [ OK ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension (1 ms) 6: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFile -6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (1 ms) +6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (0 ms) 6: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName -6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (0 ms) +6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (1 ms) 6: [ RUN ] ParseCommonArgsTest.CanKeepUnknownArgs 6: [ OK ] ParseCommonArgsTest.CanKeepUnknownArgs (0 ms) -6: [----------] 21 tests from ParseCommonArgsTest (5 ms total) +6: [----------] 21 tests from ParseCommonArgsTest (3 ms total) 6: 6: [----------] Global test environment tear-down -6: [==========] 55 tests from 6 test cases ran. (18 ms total) +6: [==========] 55 tests from 6 test cases ran. (10 ms total) 6: [ PASSED ] 55 tests. - 6/27 Test #6: CommandLineUnitTests ............. Passed 0.05 sec + 6/27 Test #6: CommandLineUnitTests ............. Passed 0.04 sec test 7 Start 7: DomDecTests @@ -51702,7 +51734,7 @@ 7: [----------] Global test environment tear-down 7: [==========] 9 tests from 2 test cases ran. (0 ms total) 7: [ PASSED ] 9 tests. - 7/27 Test #7: DomDecTests ...................... Passed 0.03 sec + 7/27 Test #7: DomDecTests ...................... Passed 0.02 sec test 8 Start 8: EwaldUnitTests @@ -51712,52 +51744,52 @@ 8: [----------] Global test environment set-up. 8: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest 8: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 -8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 (0 ms) +8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 (1 ms) 8: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 (0 ms) 8: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 (0 ms) 8: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 -8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (4 ms) +8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (3 ms) 8: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 (0 ms) -8: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (5 ms total) +8: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (4 ms total) 8: 8: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (7 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (7 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (8 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 @@ -51765,14 +51797,14 @@ 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (1 ms) -8: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (51 ms total) +8: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (43 ms total) 8: 8: [----------] 144 tests from SaneInput/PmeGatherTest 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/0 @@ -51780,25 +51812,25 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/1 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/1 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/2 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/2 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/2 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/3 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/3 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/3 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/4 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/4 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/4 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/5 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/5 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/5 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/6 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/6 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/6 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/7 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/7 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/8 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/8 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/8 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/9 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/9 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/10 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/11 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/12 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/13 @@ -51806,7 +51838,7 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/14 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/14 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/15 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/15 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/15 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/16 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/16 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/17 @@ -51814,19 +51846,19 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/18 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/18 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/19 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/20 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/20 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/20 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/21 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/21 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/21 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/22 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/23 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/24 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/25 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/25 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/25 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/26 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/26 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/27 @@ -51838,7 +51870,7 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/30 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/30 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/31 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/31 (2 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/31 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/32 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/32 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/33 @@ -51852,7 +51884,7 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/37 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/37 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/38 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/38 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/38 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/39 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/40 @@ -51866,13 +51898,13 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/44 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/44 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/45 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/45 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/45 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/46 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/46 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/47 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/47 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/47 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/48 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/48 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/48 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/49 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/49 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/50 @@ -51880,23 +51912,23 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/51 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/51 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/52 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/52 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/52 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/53 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/53 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/54 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/54 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/54 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/55 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/55 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/55 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/56 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/56 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/56 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/57 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/57 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/57 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/58 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/58 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/58 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/59 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/59 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/59 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/60 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/60 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/60 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/61 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/61 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/62 @@ -51904,17 +51936,17 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/63 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/63 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/64 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/64 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/64 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/65 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/66 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/66 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/66 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/67 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/68 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/69 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/70 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/70 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/71 @@ -51930,15 +51962,15 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/76 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/76 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/77 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/77 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/77 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/78 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/78 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/78 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/79 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/79 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/79 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/80 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/81 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/82 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/82 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/83 @@ -51946,17 +51978,17 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/84 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/85 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/85 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/85 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/86 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/86 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/87 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/87 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/87 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/88 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/88 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/88 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/89 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/90 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/91 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/91 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/92 @@ -51964,17 +51996,17 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/93 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/93 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/94 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/94 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/94 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/95 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/95 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/96 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/96 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/96 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/97 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/97 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/97 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/98 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/98 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/98 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/99 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/100 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/101 @@ -51982,19 +52014,19 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/102 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/103 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/104 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/105 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/105 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/105 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/106 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/106 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/106 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/107 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/107 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/107 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/108 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/109 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/109 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/109 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/110 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/110 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/111 @@ -52006,17 +52038,17 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/114 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/114 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/115 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/115 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/115 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/116 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/116 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/117 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/117 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/117 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/118 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/118 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/118 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/119 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/119 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/119 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/120 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/120 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/120 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/121 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/121 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/122 @@ -52024,23 +52056,23 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/123 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/123 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/124 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/124 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/124 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/125 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/125 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/125 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/126 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/126 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/127 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/127 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/127 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/128 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/128 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/128 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/129 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/130 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/130 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/130 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/131 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/131 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/131 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/132 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/132 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/132 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/133 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/133 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/134 @@ -52056,26 +52088,26 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/139 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/139 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/140 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/140 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/140 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/141 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/141 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/142 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/143 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (0 ms) -8: [----------] 144 tests from SaneInput/PmeGatherTest (70 ms total) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (1 ms) +8: [----------] 144 tests from SaneInput/PmeGatherTest (62 ms total) 8: 8: [----------] 16 tests from SaneInput/PmeSolveTest 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/0 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (2 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/1 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (2 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/2 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/2 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/3 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/4 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (3 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/5 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/6 @@ -52091,14 +52123,14 @@ 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/11 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/12 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/12 (1 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/12 (0 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/13 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/13 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/14 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/15 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (1 ms) -8: [----------] 16 tests from SaneInput/PmeSolveTest (25 ms total) +8: [----------] 16 tests from SaneInput/PmeSolveTest (21 ms total) 8: 8: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 @@ -52108,7 +52140,7 @@ 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 -8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 (1 ms) +8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 (0 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 @@ -52117,32 +52149,32 @@ 8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (1 ms) -8: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (8 ms total) +8: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (7 ms total) 8: 8: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (2 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (2 ms) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (1 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 (1 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 (2 ms) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 (1 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (1 ms) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (2 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (1 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (2 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (1 ms) -8: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (13 ms total) +8: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (12 ms total) 8: 8: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 (2 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (2 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 @@ -52152,13 +52184,13 @@ 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (0 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (2 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (2 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 @@ -52166,43 +52198,43 @@ 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (2 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (1 ms) -8: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (22 ms total) +8: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (19 ms total) 8: 8: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 (2 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (3 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (2 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (1 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (3 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (1 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (1 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (2 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (1 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (3 ms) -8: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (25 ms total) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (2 ms) +8: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (21 ms total) 8: 8: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (1 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 @@ -52214,50 +52246,50 @@ 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 (3 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 (2 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (2 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (1 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (3 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (3 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (3 ms) -8: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (29 ms total) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (2 ms) +8: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (24 ms total) 8: 8: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (4 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (3 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (4 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (6 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (7 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (6 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (8 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (10 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (8 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (4 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (4 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (6 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (5 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (6 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (8 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (7 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (9 ms) -8: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (84 ms total) +8: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (74 ms total) 8: 8: [----------] Global test environment tear-down -8: [==========] 257 tests from 10 test cases ran. (370 ms total) +8: [==========] 257 tests from 10 test cases ran. (305 ms total) 8: [ PASSED ] 257 tests. - 8/27 Test #8: EwaldUnitTests ................... Passed 0.45 sec + 8/27 Test #8: EwaldUnitTests ................... Passed 0.37 sec test 9 Start 9: FFTUnitTests @@ -52267,15 +52299,15 @@ 9: [----------] Global test environment set-up. 9: [----------] 2 tests from ManyFFTTest 9: [ RUN ] ManyFFTTest.Complex1DLength48Multi5Test -9: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (8 ms) +9: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (7 ms) 9: [ RUN ] ManyFFTTest.Real1DLength48Multi5Test -9: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (12 ms) -9: [----------] 2 tests from ManyFFTTest (22 ms total) +9: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (11 ms) +9: [----------] 2 tests from ManyFFTTest (20 ms total) 9: 9: [----------] 1 test from FFTTest 9: [ RUN ] FFTTest.Real2DLength18_15Test -9: [ OK ] FFTTest.Real2DLength18_15Test (9 ms) -9: [----------] 1 test from FFTTest (9 ms total) +9: [ OK ] FFTTest.Real2DLength18_15Test (4 ms) +9: [----------] 1 test from FFTTest (4 ms total) 9: 9: [----------] 1 test from FFFTest3D 9: [ RUN ] FFFTest3D.Real5_6_9 @@ -52292,23 +52324,23 @@ 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/3 9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (3 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/4 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (3 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (2 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/0 9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (0 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/1 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (0 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (1 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/2 9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/2 (1 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/3 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (7 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (6 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/4 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (11 ms) -9: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (30 ms total) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (10 ms) +9: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (26 ms total) 9: 9: [----------] Global test environment tear-down -9: [==========] 14 tests from 4 test cases ran. (65 ms total) +9: [==========] 14 tests from 4 test cases ran. (53 ms total) 9: [ PASSED ] 14 tests. - 9/27 Test #9: FFTUnitTests ..................... Passed 0.10 sec + 9/27 Test #9: FFTUnitTests ..................... Passed 0.08 sec test 10 Start 10: GpuUtilsUnitTests @@ -52421,7 +52453,7 @@ 10: [ OK ] HostAllocatorTestNoMem/3.Swap (0 ms) 10: [ RUN ] HostAllocatorTestNoMem/3.Comparison 10: [ OK ] HostAllocatorTestNoMem/3.Comparison (0 ms) -10: [----------] 5 tests from HostAllocatorTestNoMem/3 (1 ms total) +10: [----------] 5 tests from HostAllocatorTestNoMem/3 (0 ms total) 10: 10: [----------] 2 tests from HostAllocatorTestNoMemCopyable/0, where TypeParam = int 10: [ RUN ] HostAllocatorTestNoMemCopyable/0.CopyAssignment @@ -52432,10 +52464,10 @@ 10: 10: [----------] 2 tests from HostAllocatorTestNoMemCopyable/1, where TypeParam = float 10: [ RUN ] HostAllocatorTestNoMemCopyable/1.CopyAssignment -10: [ OK ] HostAllocatorTestNoMemCopyable/1.CopyAssignment (0 ms) +10: [ OK ] HostAllocatorTestNoMemCopyable/1.CopyAssignment (1 ms) 10: [ RUN ] HostAllocatorTestNoMemCopyable/1.CopyConstruction 10: [ OK ] HostAllocatorTestNoMemCopyable/1.CopyConstruction (0 ms) -10: [----------] 2 tests from HostAllocatorTestNoMemCopyable/1 (0 ms total) +10: [----------] 2 tests from HostAllocatorTestNoMemCopyable/1 (1 ms total) 10: 10: [----------] 2 tests from HostAllocatorTestNoMemCopyable/2, where TypeParam = gmx::BasicVector 10: [ RUN ] HostAllocatorTestNoMemCopyable/2.CopyAssignment @@ -52477,10 +52509,10 @@ 10: [ RUN ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment 10: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment -10: [ OK ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment (1 ms) +10: [ OK ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/2.Move 10: [ OK ] AllocatorTest/2.Move (0 ms) -10: [----------] 4 tests from AllocatorTest/2 (1 ms total) +10: [----------] 4 tests from AllocatorTest/2 (0 ms total) 10: 10: [----------] 4 tests from AllocatorTest/3, where TypeParam = gmx::Allocator 10: [ RUN ] AllocatorTest/3.AllocatorAlignAllocatesWithAlignment @@ -52491,12 +52523,12 @@ 10: [ OK ] AllocatorTest/3.VectorAllocatesAndReservesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/3.Move 10: [ OK ] AllocatorTest/3.Move (0 ms) -10: [----------] 4 tests from AllocatorTest/3 (0 ms total) +10: [----------] 4 tests from AllocatorTest/3 (1 ms total) 10: 10: [----------] Global test environment tear-down 10: [==========] 60 tests from 19 test cases ran. (3 ms total) 10: [ PASSED ] 60 tests. -10/27 Test #10: GpuUtilsUnitTests ................ Passed 0.05 sec +10/27 Test #10: GpuUtilsUnitTests ................ Passed 0.03 sec test 11 Start 11: HardwareUnitTests @@ -52506,19 +52538,19 @@ 11: [----------] Global test environment set-up. 11: [----------] 4 tests from HardwareTopologyTest 11: [ RUN ] HardwareTopologyTest.Execute -11: [ OK ] HardwareTopologyTest.Execute (21 ms) +11: [ OK ] HardwareTopologyTest.Execute (16 ms) 11: [ RUN ] HardwareTopologyTest.HwlocExecute -11: [ OK ] HardwareTopologyTest.HwlocExecute (22 ms) +11: [ OK ] HardwareTopologyTest.HwlocExecute (15 ms) 11: [ RUN ] HardwareTopologyTest.ProcessorSelfconsistency -11: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (24 ms) +11: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (15 ms) 11: [ RUN ] HardwareTopologyTest.NumaCacheSelfconsistency -11: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (22 ms) -11: [----------] 4 tests from HardwareTopologyTest (89 ms total) +11: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (16 ms) +11: [----------] 4 tests from HardwareTopologyTest (63 ms total) 11: 11: [----------] Global test environment tear-down -11: [==========] 4 tests from 1 test case ran. (89 ms total) +11: [==========] 4 tests from 1 test case ran. (63 ms total) 11: [ PASSED ] 4 tests. -11/27 Test #11: HardwareUnitTests ................ Passed 0.12 sec +11/27 Test #11: HardwareUnitTests ................ Passed 0.09 sec test 12 Start 12: MathUnitTests @@ -52578,11 +52610,11 @@ 12: [ RUN ] FunctionTest.Log2I32Bit 12: [ OK ] FunctionTest.Log2I32Bit (0 ms) 12: [ RUN ] FunctionTest.Log2I64Bit -12: [ OK ] FunctionTest.Log2I64Bit (0 ms) +12: [ OK ] FunctionTest.Log2I64Bit (1 ms) 12: [ RUN ] FunctionTest.GreatestCommonDivisor 12: [ OK ] FunctionTest.GreatestCommonDivisor (0 ms) 12: [ RUN ] FunctionTest.InvsqrtFloat -12: [ OK ] FunctionTest.InvsqrtFloat (1 ms) +12: [ OK ] FunctionTest.InvsqrtFloat (0 ms) 12: [ RUN ] FunctionTest.InvsqrtDouble 12: [ OK ] FunctionTest.InvsqrtDouble (0 ms) 12: [ RUN ] FunctionTest.InvsqrtInteger @@ -52592,9 +52624,9 @@ 12: [ RUN ] FunctionTest.InvcbrtDouble 12: [ OK ] FunctionTest.InvcbrtDouble (0 ms) 12: [ RUN ] FunctionTest.InvcbrtInteger -12: [ OK ] FunctionTest.InvcbrtInteger (0 ms) +12: [ OK ] FunctionTest.InvcbrtInteger (1 ms) 12: [ RUN ] FunctionTest.SixthrootFloat -12: [ OK ] FunctionTest.SixthrootFloat (1 ms) +12: [ OK ] FunctionTest.SixthrootFloat (0 ms) 12: [ RUN ] FunctionTest.SixthrootDouble 12: [ OK ] FunctionTest.SixthrootDouble (0 ms) 12: [ RUN ] FunctionTest.SixthrootInteger @@ -52604,17 +52636,17 @@ 12: [ RUN ] FunctionTest.InvsixthrootDouble 12: [ OK ] FunctionTest.InvsixthrootDouble (0 ms) 12: [ RUN ] FunctionTest.InvsixthrootInteger -12: [ OK ] FunctionTest.InvsixthrootInteger (1 ms) +12: [ OK ] FunctionTest.InvsixthrootInteger (0 ms) 12: [ RUN ] FunctionTest.Powers 12: [ OK ] FunctionTest.Powers (0 ms) 12: [ RUN ] FunctionTest.ErfInvFloat -12: [ OK ] FunctionTest.ErfInvFloat (0 ms) +12: [ OK ] FunctionTest.ErfInvFloat (1 ms) 12: [ RUN ] FunctionTest.ErfInvDouble 12: [ OK ] FunctionTest.ErfInvDouble (0 ms) 12: [ RUN ] FunctionTest.ErfAndErfInvAreInversesFloat 12: [ OK ] FunctionTest.ErfAndErfInvAreInversesFloat (0 ms) 12: [ RUN ] FunctionTest.ErfAndErfInvAreInversesDouble -12: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (0 ms) +12: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (1 ms) 12: [----------] 21 tests from FunctionTest (4 ms total) 12: 12: [----------] 2 tests from InvertMatrixTest @@ -52646,12 +52678,12 @@ 12: [ RUN ] PaddedVectorTest/1.ConstructsResizesAndReserves 12: [ OK ] PaddedVectorTest/1.ConstructsResizesAndReserves (0 ms) 12: [ RUN ] PaddedVectorTest/1.CanCopyAssign -12: [ OK ] PaddedVectorTest/1.CanCopyAssign (1 ms) +12: [ OK ] PaddedVectorTest/1.CanCopyAssign (0 ms) 12: [ RUN ] PaddedVectorTest/1.CanMoveAssign 12: [ OK ] PaddedVectorTest/1.CanMoveAssign (0 ms) 12: [ RUN ] PaddedVectorTest/1.CanSwap 12: [ OK ] PaddedVectorTest/1.CanSwap (0 ms) -12: [----------] 4 tests from PaddedVectorTest/1 (1 ms total) +12: [----------] 4 tests from PaddedVectorTest/1 (0 ms total) 12: 12: [----------] 4 tests from PaddedVectorTest/2, where TypeParam = std::allocator 12: [ RUN ] PaddedVectorTest/2.ConstructsResizesAndReserves @@ -52688,14 +52720,14 @@ 12: 12: [----------] 4 tests from PaddedVectorTest/5, where TypeParam = gmx::Allocator 12: [ RUN ] PaddedVectorTest/5.ConstructsResizesAndReserves -12: [ OK ] PaddedVectorTest/5.ConstructsResizesAndReserves (0 ms) +12: [ OK ] PaddedVectorTest/5.ConstructsResizesAndReserves (1 ms) 12: [ RUN ] PaddedVectorTest/5.CanCopyAssign 12: [ OK ] PaddedVectorTest/5.CanCopyAssign (0 ms) 12: [ RUN ] PaddedVectorTest/5.CanMoveAssign 12: [ OK ] PaddedVectorTest/5.CanMoveAssign (0 ms) 12: [ RUN ] PaddedVectorTest/5.CanSwap 12: [ OK ] PaddedVectorTest/5.CanSwap (0 ms) -12: [----------] 4 tests from PaddedVectorTest/5 (0 ms total) +12: [----------] 4 tests from PaddedVectorTest/5 (1 ms total) 12: 12: [----------] 4 tests from PaddedVectorTest/6, where TypeParam = gmx::Allocator 12: [ RUN ] PaddedVectorTest/6.ConstructsResizesAndReserves @@ -52739,7 +52771,7 @@ 12: [ OK ] PaddedVectorTest/9.CanMoveAssign (0 ms) 12: [ RUN ] PaddedVectorTest/9.CanSwap 12: [ OK ] PaddedVectorTest/9.CanSwap (0 ms) -12: [----------] 4 tests from PaddedVectorTest/9 (1 ms total) +12: [----------] 4 tests from PaddedVectorTest/9 (0 ms total) 12: 12: [----------] 33 tests from RVecTest 12: [ RUN ] RVecTest.CanBeStoredInVector @@ -52808,12 +52840,12 @@ 12: [ OK ] RVecTest.MoveConstructorWorks (0 ms) 12: [ RUN ] RVecTest.MoveAssignmentWorks 12: [ OK ] RVecTest.MoveAssignmentWorks (0 ms) -12: [----------] 33 tests from RVecTest (6 ms total) +12: [----------] 33 tests from RVecTest (1 ms total) 12: 12: [----------] Global test environment tear-down -12: [==========] 112 tests from 20 test cases ran. (13 ms total) +12: [==========] 112 tests from 20 test cases ran. (6 ms total) 12: [ PASSED ] 112 tests. -12/27 Test #12: MathUnitTests .................... Passed 0.05 sec +12/27 Test #12: MathUnitTests .................... Passed 0.03 sec test 13 Start 13: MdrunUtilityUnitTests @@ -52827,17 +52859,17 @@ 13: [ RUN ] ThreadAffinityTest.DoesNothingWhenNotSupported 13: [ OK ] ThreadAffinityTest.DoesNothingWhenNotSupported (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads -13: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads (1 ms) +13: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads 13: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads 13: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithUnknownHardware -13: [ OK ] ThreadAffinityTest.DoesNothingWithUnknownHardware (5 ms) +13: [ OK ] ThreadAffinityTest.DoesNothingWithUnknownHardware (1 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithTooManyThreads 13: [ OK ] ThreadAffinityTest.DoesNothingWithTooManyThreads (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeOffset -13: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeOffset (1 ms) +13: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeOffset (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeStride 13: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeStride (0 ms) 13: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithAuto @@ -52852,18 +52884,18 @@ 13: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithAuto 13: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (1 ms) 13: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced -13: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (1 ms) +13: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (0 ms) 13: [ RUN ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads -13: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (0 ms) +13: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (1 ms) 13: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing 13: NOTE: Affinity setting for 1/2 threads failed. -13: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (1 ms) -13: [----------] 17 tests from ThreadAffinityTest (11 ms total) +13: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (0 ms) +13: [----------] 17 tests from ThreadAffinityTest (4 ms total) 13: 13: [----------] Global test environment tear-down -13: [==========] 17 tests from 1 test case ran. (11 ms total) +13: [==========] 17 tests from 1 test case ran. (4 ms total) 13: [ PASSED ] 17 tests. -13/27 Test #13: MdrunUtilityUnitTests ............ Passed 0.04 sec +13/27 Test #13: MdrunUtilityUnitTests ............ Passed 0.03 sec test 14 Start 14: MdrunUtilityMpiUnitTests @@ -52873,7 +52905,7 @@ 14: [----------] Global test environment set-up. 14: [----------] 6 tests from ThreadAffinityMultiRankTest 14: [ RUN ] ThreadAffinityMultiRankTest.PinsWholeNode -14: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (0 ms) +14: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (1 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride 14: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (0 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.PinsTwoNodes @@ -52881,32 +52913,32 @@ 14: [ RUN ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled 14: [ OK ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled (0 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto -14: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (0 ms) +14: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (1 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce 14: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (0 ms) -14: [----------] 6 tests from ThreadAffinityMultiRankTest (2 ms total) +14: [----------] 6 tests from ThreadAffinityMultiRankTest (3 ms total) 14: 14: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (1 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (0 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (0 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (1 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (1 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (0 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly 14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (0 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly 14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (1 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (0 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (1 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (1 ms) -14: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (4 ms total) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (0 ms) +14: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (5 ms total) 14: 14: [----------] Global test environment tear-down -14: [==========] 13 tests from 2 test cases ran. (6 ms total) +14: [==========] 13 tests from 2 test cases ran. (9 ms total) 14: [ PASSED ] 13 tests. -14/27 Test #14: MdrunUtilityMpiUnitTests ......... Passed 0.08 sec +14/27 Test #14: MdrunUtilityMpiUnitTests ......... Passed 0.06 sec test 15 Start 15: OnlineHelpUnitTests @@ -52924,19 +52956,19 @@ 15: [ RUN ] TextTableFormatterTest.HandlesOverflowingLines 15: [ OK ] TextTableFormatterTest.HandlesOverflowingLines (0 ms) 15: [ RUN ] TextTableFormatterTest.HandlesLastColumnFolding -15: [ OK ] TextTableFormatterTest.HandlesLastColumnFolding (1 ms) +15: [ OK ] TextTableFormatterTest.HandlesLastColumnFolding (0 ms) 15: [ RUN ] TextTableFormatterTest.HandlesEmptyColumns 15: [ OK ] TextTableFormatterTest.HandlesEmptyColumns (0 ms) -15: [----------] 6 tests from TextTableFormatterTest (1 ms total) +15: [----------] 6 tests from TextTableFormatterTest (0 ms total) 15: 15: [----------] 3 tests from HelpManagerTest 15: [ RUN ] HelpManagerTest.HandlesRootTopic -15: [ OK ] HelpManagerTest.HandlesRootTopic (0 ms) +15: [ OK ] HelpManagerTest.HandlesRootTopic (1 ms) 15: [ RUN ] HelpManagerTest.HandlesSubTopics 15: [ OK ] HelpManagerTest.HandlesSubTopics (0 ms) 15: [ RUN ] HelpManagerTest.HandlesInvalidTopics -15: [ OK ] HelpManagerTest.HandlesInvalidTopics (5 ms) -15: [----------] 3 tests from HelpManagerTest (5 ms total) +15: [ OK ] HelpManagerTest.HandlesInvalidTopics (0 ms) +15: [----------] 3 tests from HelpManagerTest (1 ms total) 15: 15: [----------] 2 tests from HelpTopicFormattingTest 15: [ RUN ] HelpTopicFormattingTest.FormatsSimpleTopic @@ -52961,7 +52993,7 @@ 15: [ RUN ] HelpWriterContextTest.FormatsBulletList 15: [ OK ] HelpWriterContextTest.FormatsBulletList (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsEnumeratedList -15: [ OK ] HelpWriterContextTest.FormatsEnumeratedList (0 ms) +15: [ OK ] HelpWriterContextTest.FormatsEnumeratedList (1 ms) 15: [ RUN ] HelpWriterContextTest.FormatsSimpleTable 15: [ OK ] HelpWriterContextTest.FormatsSimpleTable (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsGridTable @@ -52971,9 +53003,9 @@ 15: [----------] 11 tests from HelpWriterContextTest (2 ms total) 15: 15: [----------] Global test environment tear-down -15: [==========] 22 tests from 4 test cases ran. (8 ms total) +15: [==========] 22 tests from 4 test cases ran. (4 ms total) 15: [ PASSED ] 22 tests. -15/27 Test #15: OnlineHelpUnitTests .............. Passed 0.04 sec +15/27 Test #15: OnlineHelpUnitTests .............. Passed 0.03 sec test 16 Start 16: OptionsUnitTests @@ -52985,18 +53017,18 @@ 16: [ RUN ] AbstractOptionStorageTest.HandlesSetInFinish 16: [ OK ] AbstractOptionStorageTest.HandlesSetInFinish (0 ms) 16: [ RUN ] AbstractOptionStorageTest.HandlesValueRemoval -16: [ OK ] AbstractOptionStorageTest.HandlesValueRemoval (1 ms) +16: [ OK ] AbstractOptionStorageTest.HandlesValueRemoval (0 ms) 16: [ RUN ] AbstractOptionStorageTest.HandlesValueAddition 16: [ OK ] AbstractOptionStorageTest.HandlesValueAddition (0 ms) 16: [ RUN ] AbstractOptionStorageTest.HandlesTooManyValueAddition 16: [ OK ] AbstractOptionStorageTest.HandlesTooManyValueAddition (0 ms) 16: [ RUN ] AbstractOptionStorageTest.AllowsEmptyValues -16: [ OK ] AbstractOptionStorageTest.AllowsEmptyValues (5 ms) -16: [----------] 5 tests from AbstractOptionStorageTest (6 ms total) +16: [ OK ] AbstractOptionStorageTest.AllowsEmptyValues (0 ms) +16: [----------] 5 tests from AbstractOptionStorageTest (0 ms total) 16: 16: [----------] 8 tests from FileNameOptionTest 16: [ RUN ] FileNameOptionTest.HandlesRequiredDefaultValueWithoutExtension -16: [ OK ] FileNameOptionTest.HandlesRequiredDefaultValueWithoutExtension (0 ms) +16: [ OK ] FileNameOptionTest.HandlesRequiredDefaultValueWithoutExtension (1 ms) 16: [ RUN ] FileNameOptionTest.HandlesRequiredOptionWithoutValue 16: [ OK ] FileNameOptionTest.HandlesRequiredOptionWithoutValue (0 ms) 16: [ RUN ] FileNameOptionTest.HandlesOptionalUnsetOption @@ -53011,7 +53043,7 @@ 16: [ OK ] FileNameOptionTest.GivesErrorOnUnknownFileSuffix (0 ms) 16: [ RUN ] FileNameOptionTest.GivesErrorOnInvalidFileSuffix 16: [ OK ] FileNameOptionTest.GivesErrorOnInvalidFileSuffix (0 ms) -16: [----------] 8 tests from FileNameOptionTest (0 ms total) +16: [----------] 8 tests from FileNameOptionTest (1 ms total) 16: 16: [----------] 15 tests from FileNameOptionManagerTest 16: [ RUN ] FileNameOptionManagerTest.AddsMissingExtension @@ -53021,7 +53053,7 @@ 16: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile 16: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile (0 ms) 16: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile -16: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile (1 ms) +16: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile (0 ms) 16: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingDefaultInputFile 16: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingDefaultInputFile (0 ms) 16: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingRequiredInputFile @@ -53033,7 +53065,7 @@ 16: [ RUN ] FileNameOptionManagerTest.AcceptsMissingRequiredInputFileIfSpecified 16: [ OK ] FileNameOptionManagerTest.AcceptsMissingRequiredInputFileIfSpecified (0 ms) 16: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionBasedOnExistingFile -16: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionBasedOnExistingFile (0 ms) +16: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionBasedOnExistingFile (1 ms) 16: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredDefaultNameBasedOnExistingFile 16: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredDefaultNameBasedOnExistingFile (0 ms) 16: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalDefaultNameBasedOnExistingFile @@ -53063,14 +53095,14 @@ 16: [ RUN ] OptionsAssignerTest.HandlesMissingValue 16: [ OK ] OptionsAssignerTest.HandlesMissingValue (0 ms) 16: [ RUN ] OptionsAssignerTest.HandlesExtraValue -16: [ OK ] OptionsAssignerTest.HandlesExtraValue (1 ms) +16: [ OK ] OptionsAssignerTest.HandlesExtraValue (0 ms) 16: [ RUN ] OptionsAssignerTest.HandlesGroups 16: [ OK ] OptionsAssignerTest.HandlesGroups (0 ms) 16: [ RUN ] OptionsAssignerTest.HandlesSections 16: [ OK ] OptionsAssignerTest.HandlesSections (0 ms) 16: [ RUN ] OptionsAssignerTest.HandlesMultipleSources 16: [ OK ] OptionsAssignerTest.HandlesMultipleSources (0 ms) -16: [----------] 9 tests from OptionsAssignerTest (1 ms total) +16: [----------] 9 tests from OptionsAssignerTest (0 ms total) 16: 16: [----------] 4 tests from OptionsAssignerBooleanTest 16: [ RUN ] OptionsAssignerBooleanTest.StoresYesValue @@ -53110,7 +53142,7 @@ 16: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue (0 ms) 16: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment 16: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment (0 ms) -16: [----------] 13 tests from OptionsAssignerIntegerTest (0 ms total) +16: [----------] 13 tests from OptionsAssignerIntegerTest (1 ms total) 16: 16: [----------] 5 tests from OptionsAssignerDoubleTest 16: [ RUN ] OptionsAssignerDoubleTest.StoresSingleValue @@ -53123,7 +53155,7 @@ 16: [ OK ] OptionsAssignerDoubleTest.HandlesPreSetScaleValue (0 ms) 16: [ RUN ] OptionsAssignerDoubleTest.HandlesPostSetScaleValue 16: [ OK ] OptionsAssignerDoubleTest.HandlesPostSetScaleValue (0 ms) -16: [----------] 5 tests from OptionsAssignerDoubleTest (1 ms total) +16: [----------] 5 tests from OptionsAssignerDoubleTest (0 ms total) 16: 16: [----------] 9 tests from OptionsAssignerStringTest 16: [ RUN ] OptionsAssignerStringTest.StoresSingleValue @@ -53141,10 +53173,10 @@ 16: [ RUN ] OptionsAssignerStringTest.HandlesEnumDefaultValue 16: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValue (0 ms) 16: [ RUN ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVariable -16: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVariable (0 ms) +16: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVariable (1 ms) 16: [ RUN ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVector 16: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVector (0 ms) -16: [----------] 9 tests from OptionsAssignerStringTest (0 ms total) +16: [----------] 9 tests from OptionsAssignerStringTest (1 ms total) 16: 16: [----------] 6 tests from OptionsAssignerEnumTest 16: [ RUN ] OptionsAssignerEnumTest.StoresSingleValue @@ -53158,8 +53190,8 @@ 16: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVariable 16: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVariable (0 ms) 16: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVector -16: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVector (1 ms) -16: [----------] 6 tests from OptionsAssignerEnumTest (1 ms total) +16: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVector (0 ms) +16: [----------] 6 tests from OptionsAssignerEnumTest (0 ms total) 16: 16: [----------] 8 tests from RepeatingOptionSectionTest 16: [ RUN ] RepeatingOptionSectionTest.HandlesNoInstance @@ -53178,7 +53210,7 @@ 16: [ OK ] RepeatingOptionSectionTest.HandlesUnsetOptionWithExplicitDefault (0 ms) 16: [ RUN ] RepeatingOptionSectionTest.HandlesNestedSections 16: [ OK ] RepeatingOptionSectionTest.HandlesNestedSections (0 ms) -16: [----------] 8 tests from RepeatingOptionSectionTest (1 ms total) +16: [----------] 8 tests from RepeatingOptionSectionTest (0 ms total) 16: 16: [----------] 1 test from TimeUnitManagerTest 16: [ RUN ] TimeUnitManagerTest.BasicOperations @@ -53210,7 +53242,7 @@ 16: 16: [----------] 5 tests from TreeValueSupportCheckTest 16: [ RUN ] TreeValueSupportCheckTest.HandlesEmpty -16: [ OK ] TreeValueSupportCheckTest.HandlesEmpty (0 ms) +16: [ OK ] TreeValueSupportCheckTest.HandlesEmpty (1 ms) 16: [ RUN ] TreeValueSupportCheckTest.HandlesMatchingTree 16: [ OK ] TreeValueSupportCheckTest.HandlesMatchingTree (0 ms) 16: [ RUN ] TreeValueSupportCheckTest.HandlesSmallerTree1 @@ -53219,11 +53251,11 @@ 16: [ OK ] TreeValueSupportCheckTest.HandlesSmallerTree2 (0 ms) 16: [ RUN ] TreeValueSupportCheckTest.DetectsExtraValue 16: [ OK ] TreeValueSupportCheckTest.DetectsExtraValue (0 ms) -16: [----------] 5 tests from TreeValueSupportCheckTest (0 ms total) +16: [----------] 5 tests from TreeValueSupportCheckTest (1 ms total) 16: 16: [----------] 6 tests from TreeValueSupportAdjustTest 16: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultValues -16: [ OK ] TreeValueSupportAdjustTest.FillsDefaultValues (1 ms) +16: [ OK ] TreeValueSupportAdjustTest.FillsDefaultValues (0 ms) 16: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultVectorValues 16: [ OK ] TreeValueSupportAdjustTest.FillsDefaultVectorValues (0 ms) 16: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultObjectValues @@ -53233,12 +53265,12 @@ 16: [ RUN ] TreeValueSupportAdjustTest.MergesDefaultValues 16: [ OK ] TreeValueSupportAdjustTest.MergesDefaultValues (0 ms) 16: [ RUN ] TreeValueSupportAdjustTest.OrdersValues -16: [ OK ] TreeValueSupportAdjustTest.OrdersValues (0 ms) +16: [ OK ] TreeValueSupportAdjustTest.OrdersValues (1 ms) 16: [----------] 6 tests from TreeValueSupportAdjustTest (1 ms total) 16: 16: [----------] 8 tests from TreeValueSupportTest 16: [ RUN ] TreeValueSupportTest.SupportsBooleanOption -16: [ OK ] TreeValueSupportTest.SupportsBooleanOption (1 ms) +16: [ OK ] TreeValueSupportTest.SupportsBooleanOption (0 ms) 16: [ RUN ] TreeValueSupportTest.SupportsIntegerOption 16: [ OK ] TreeValueSupportTest.SupportsIntegerOption (0 ms) 16: [ RUN ] TreeValueSupportTest.SupportsInt64Option @@ -53252,13 +53284,13 @@ 16: [ RUN ] TreeValueSupportTest.SupportsEnumIntOption 16: [ OK ] TreeValueSupportTest.SupportsEnumIntOption (0 ms) 16: [ RUN ] TreeValueSupportTest.SupportsEnumOption -16: [ OK ] TreeValueSupportTest.SupportsEnumOption (1 ms) -16: [----------] 8 tests from TreeValueSupportTest (3 ms total) +16: [ OK ] TreeValueSupportTest.SupportsEnumOption (0 ms) +16: [----------] 8 tests from TreeValueSupportTest (1 ms total) 16: 16: [----------] Global test environment tear-down -16: [==========] 110 tests from 18 test cases ran. (15 ms total) +16: [==========] 110 tests from 18 test cases ran. (8 ms total) 16: [ PASSED ] 110 tests. -16/27 Test #16: OptionsUnitTests ................. Passed 0.05 sec +16/27 Test #16: OptionsUnitTests ................. Passed 0.04 sec test 17 Start 17: RandomUnitTests @@ -53286,18 +53318,18 @@ 17: [ OK ] GammaDistributionTest.Reset (0 ms) 17: [ RUN ] GammaDistributionTest.AltParam 17: [ OK ] GammaDistributionTest.AltParam (0 ms) -17: [----------] 4 tests from GammaDistributionTest (0 ms total) +17: [----------] 4 tests from GammaDistributionTest (1 ms total) 17: 17: [----------] 4 tests from NormalDistributionTest 17: [ RUN ] NormalDistributionTest.Output -17: [ OK ] NormalDistributionTest.Output (1 ms) +17: [ OK ] NormalDistributionTest.Output (0 ms) 17: [ RUN ] NormalDistributionTest.Logical 17: [ OK ] NormalDistributionTest.Logical (0 ms) 17: [ RUN ] NormalDistributionTest.Reset 17: [ OK ] NormalDistributionTest.Reset (0 ms) 17: [ RUN ] NormalDistributionTest.AltParam 17: [ OK ] NormalDistributionTest.AltParam (0 ms) -17: [----------] 4 tests from NormalDistributionTest (1 ms total) +17: [----------] 4 tests from NormalDistributionTest (0 ms total) 17: 17: [----------] 1 test from SeedTest 17: [ RUN ] SeedTest.makeRandomSeed @@ -53317,12 +53349,12 @@ 17: [ OK ] TabulatedNormalDistributionTest.Reset (0 ms) 17: [ RUN ] TabulatedNormalDistributionTest.AltParam 17: [ OK ] TabulatedNormalDistributionTest.AltParam (0 ms) -17: [----------] 6 tests from TabulatedNormalDistributionTest (1 ms total) +17: [----------] 6 tests from TabulatedNormalDistributionTest (0 ms total) 17: 17: [----------] 1 test from TabulatedNormalDistributionTableTest 17: [ RUN ] TabulatedNormalDistributionTableTest.HasValidProperties -17: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (2 ms) -17: [----------] 1 test from TabulatedNormalDistributionTableTest (2 ms total) +17: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (3 ms) +17: [----------] 1 test from TabulatedNormalDistributionTableTest (3 ms total) 17: 17: [----------] 6 tests from ThreeFry2x64Test 17: [ RUN ] ThreeFry2x64Test.Logical @@ -53337,18 +53369,18 @@ 17: [ OK ] ThreeFry2x64Test.InvalidCounter (0 ms) 17: [ RUN ] ThreeFry2x64Test.ExhaustInternalCounter 17: [ OK ] ThreeFry2x64Test.ExhaustInternalCounter (0 ms) -17: [----------] 6 tests from ThreeFry2x64Test (1 ms total) +17: [----------] 6 tests from ThreeFry2x64Test (0 ms total) 17: 17: [----------] 4 tests from UniformIntDistributionTest 17: [ RUN ] UniformIntDistributionTest.Output -17: [ OK ] UniformIntDistributionTest.Output (0 ms) +17: [ OK ] UniformIntDistributionTest.Output (1 ms) 17: [ RUN ] UniformIntDistributionTest.Logical 17: [ OK ] UniformIntDistributionTest.Logical (0 ms) 17: [ RUN ] UniformIntDistributionTest.Reset 17: [ OK ] UniformIntDistributionTest.Reset (0 ms) 17: [ RUN ] UniformIntDistributionTest.AltParam 17: [ OK ] UniformIntDistributionTest.AltParam (0 ms) -17: [----------] 4 tests from UniformIntDistributionTest (4 ms total) +17: [----------] 4 tests from UniformIntDistributionTest (1 ms total) 17: 17: [----------] 5 tests from UniformRealDistributionTest 17: [ RUN ] UniformRealDistributionTest.GenerateCanonical @@ -53385,9 +53417,9 @@ 17: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (1 ms total) 17: 17: [----------] Global test environment tear-down -17: [==========] 44 tests from 10 test cases ran. (11 ms total) +17: [==========] 44 tests from 10 test cases ran. (6 ms total) 17: [ PASSED ] 44 tests. -17/27 Test #17: RandomUnitTests .................. Passed 0.06 sec +17/27 Test #17: RandomUnitTests .................. Passed 0.04 sec test 18 Start 18: RestraintTests @@ -53413,30 +53445,30 @@ 19: [----------] Global test environment set-up. 19: [----------] 10 tests from SplineTableTest/0, where TypeParam = gmx::QuadraticSplineTable 19: [ RUN ] SplineTableTest/0.HandlesIncorrectInput -19: [ OK ] SplineTableTest/0.HandlesIncorrectInput (4 ms) +19: [ OK ] SplineTableTest/0.HandlesIncorrectInput (3 ms) 19: [ RUN ] SplineTableTest/0.Sinc -19: [ OK ] SplineTableTest/0.Sinc (1 ms) +19: [ OK ] SplineTableTest/0.Sinc (2 ms) 19: [ RUN ] SplineTableTest/0.LJ12 -19: [ OK ] SplineTableTest/0.LJ12 (34 ms) +19: [ OK ] SplineTableTest/0.LJ12 (32 ms) 19: [ RUN ] SplineTableTest/0.PmeCorrection 19: [ OK ] SplineTableTest/0.PmeCorrection (2 ms) 19: [ RUN ] SplineTableTest/0.HandlesIncorrectNumericalInput 19: [ OK ] SplineTableTest/0.HandlesIncorrectNumericalInput (1 ms) 19: [ RUN ] SplineTableTest/0.NumericalInputPmeCorr -19: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (2 ms) +19: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (1 ms) 19: [ RUN ] SplineTableTest/0.TwoFunctions -19: [ OK ] SplineTableTest/0.TwoFunctions (65 ms) +19: [ OK ] SplineTableTest/0.TwoFunctions (62 ms) 19: [ RUN ] SplineTableTest/0.ThreeFunctions -19: [ OK ] SplineTableTest/0.ThreeFunctions (70 ms) +19: [ OK ] SplineTableTest/0.ThreeFunctions (68 ms) 19: [ RUN ] SplineTableTest/0.Simd 19: [ OK ] SplineTableTest/0.Simd (16 ms) 19: [ RUN ] SplineTableTest/0.SimdTwoFunctions -19: [ OK ] SplineTableTest/0.SimdTwoFunctions (64 ms) -19: [----------] 10 tests from SplineTableTest/0 (260 ms total) +19: [ OK ] SplineTableTest/0.SimdTwoFunctions (62 ms) +19: [----------] 10 tests from SplineTableTest/0 (250 ms total) 19: 19: [----------] 10 tests from SplineTableTest/1, where TypeParam = gmx::CubicSplineTable 19: [ RUN ] SplineTableTest/1.HandlesIncorrectInput -19: [ OK ] SplineTableTest/1.HandlesIncorrectInput (4 ms) +19: [ OK ] SplineTableTest/1.HandlesIncorrectInput (3 ms) 19: [ RUN ] SplineTableTest/1.Sinc 19: [ OK ] SplineTableTest/1.Sinc (1 ms) 19: [ RUN ] SplineTableTest/1.LJ12 @@ -53444,7 +53476,7 @@ 19: [ RUN ] SplineTableTest/1.PmeCorrection 19: [ OK ] SplineTableTest/1.PmeCorrection (2 ms) 19: [ RUN ] SplineTableTest/1.HandlesIncorrectNumericalInput -19: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (0 ms) +19: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (1 ms) 19: [ RUN ] SplineTableTest/1.NumericalInputPmeCorr 19: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (2 ms) 19: [ RUN ] SplineTableTest/1.TwoFunctions @@ -53455,12 +53487,12 @@ 19: [ OK ] SplineTableTest/1.Simd (3 ms) 19: [ RUN ] SplineTableTest/1.SimdTwoFunctions 19: [ OK ] SplineTableTest/1.SimdTwoFunctions (10 ms) -19: [----------] 10 tests from SplineTableTest/1 (50 ms total) +19: [----------] 10 tests from SplineTableTest/1 (49 ms total) 19: 19: [----------] Global test environment tear-down -19: [==========] 20 tests from 2 test cases ran. (310 ms total) +19: [==========] 20 tests from 2 test cases ran. (299 ms total) 19: [ PASSED ] 20 tests. -19/27 Test #19: TableUnitTests ................... Passed 0.34 sec +19/27 Test #19: TableUnitTests ................... Passed 0.32 sec test 20 Start 20: TaskAssignmentUnitTests @@ -53492,7 +53524,7 @@ 21: [ RUN ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment 21: [ OK ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment -21: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (1 ms) +21: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment 21: [ OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/0.Move @@ -53544,7 +53576,7 @@ 21: [ RUN ] AllocatorTest/4.AllocatorAlignAllocatesWithAlignment 21: [ OK ] AllocatorTest/4.AllocatorAlignAllocatesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment -21: [ OK ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment (1 ms) +21: [ OK ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/4.VectorAllocatesAndReservesWithAlignment 21: [ OK ] AllocatorTest/4.VectorAllocatesAndReservesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/4.Move @@ -53684,7 +53716,7 @@ 21: [ OK ] ArrayRefTest/4.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/4.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/4.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/4 (6 ms total) +21: [----------] 9 tests from ArrayRefTest/4 (0 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/5, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/5.MakeWithAssignmentWorks @@ -53747,7 +53779,7 @@ 21: [ OK ] ArrayRefTest/7.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/7.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/7.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/7 (0 ms total) +21: [----------] 9 tests from ArrayRefTest/7 (1 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/8, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/8.MakeWithAssignmentWorks @@ -53784,12 +53816,12 @@ 21: [ RUN ] ArrayRefTest/9.ConstructFromNonConstPointersWorks 21: [ OK ] ArrayRefTest/9.ConstructFromNonConstPointersWorks (0 ms) 21: [ RUN ] ArrayRefTest/9.ConstructFromVectorWorks -21: [ OK ] ArrayRefTest/9.ConstructFromVectorWorks (1 ms) +21: [ OK ] ArrayRefTest/9.ConstructFromVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/9.ConstructFromNonConstVectorWorks 21: [ OK ] ArrayRefTest/9.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/9.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/9.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/9 (1 ms total) +21: [----------] 9 tests from ArrayRefTest/9 (0 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/10, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/10.MakeWithAssignmentWorks @@ -53852,7 +53884,7 @@ 21: [ OK ] ArrayRefTest/12.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/12.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/12.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/12 (0 ms total) +21: [----------] 9 tests from ArrayRefTest/12 (1 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/13, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/13.MakeWithAssignmentWorks @@ -53894,7 +53926,7 @@ 21: [ OK ] ArrayRefTest/14.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/14.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/14.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/14 (1 ms total) +21: [----------] 9 tests from ArrayRefTest/14 (0 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/15, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/15.MakeWithAssignmentWorks @@ -53999,7 +54031,7 @@ 21: [ OK ] ArrayRefTest/19.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/19.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/19.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/19 (1 ms total) +21: [----------] 9 tests from ArrayRefTest/19 (0 ms total) 21: 21: [----------] 4 tests from KeyValueTreeSerializerTest 21: [ RUN ] KeyValueTreeSerializerTest.EmptyTree @@ -54007,9 +54039,9 @@ 21: [ RUN ] KeyValueTreeSerializerTest.SimpleObject 21: [ OK ] KeyValueTreeSerializerTest.SimpleObject (0 ms) 21: [ RUN ] KeyValueTreeSerializerTest.ObjectWithArrays -21: [ OK ] KeyValueTreeSerializerTest.ObjectWithArrays (0 ms) +21: [ OK ] KeyValueTreeSerializerTest.ObjectWithArrays (1 ms) 21: [ RUN ] KeyValueTreeSerializerTest.ObjectWithObjects -21: [ OK ] KeyValueTreeSerializerTest.ObjectWithObjects (1 ms) +21: [ OK ] KeyValueTreeSerializerTest.ObjectWithObjects (0 ms) 21: [----------] 4 tests from KeyValueTreeSerializerTest (1 ms total) 21: 21: [----------] 6 tests from TreeValueTransformTest @@ -54022,7 +54054,7 @@ 21: [ RUN ] TreeValueTransformTest.ObjectFromString 21: [ OK ] TreeValueTransformTest.ObjectFromString (0 ms) 21: [ RUN ] TreeValueTransformTest.ObjectFromMultipleStrings -21: [ OK ] TreeValueTransformTest.ObjectFromMultipleStrings (1 ms) +21: [ OK ] TreeValueTransformTest.ObjectFromMultipleStrings (0 ms) 21: [ RUN ] TreeValueTransformTest.ScopedTransformRules 21: [ OK ] TreeValueTransformTest.ScopedTransformRules (0 ms) 21: [----------] 6 tests from TreeValueTransformTest (1 ms total) @@ -54034,7 +54066,7 @@ 21: 21: [----------] 2 tests from RegexBasicTest 21: [ RUN ] RegexBasicTest.BasicMatchesWorkWhenSupported -21: [ OK ] RegexBasicTest.BasicMatchesWorkWhenSupported (1 ms) +21: [ OK ] RegexBasicTest.BasicMatchesWorkWhenSupported (0 ms) 21: [ RUN ] RegexBasicTest.MatchesForCharacterClassesWorkWhenSupported 21: [ OK ] RegexBasicTest.MatchesForCharacterClassesWorkWhenSupported (0 ms) 21: [----------] 2 tests from RegexBasicTest (1 ms total) @@ -54043,14 +54075,14 @@ 21: [ RUN ] LoggerTest.EmptyLoggerWorks 21: [ OK ] LoggerTest.EmptyLoggerWorks (0 ms) 21: [ RUN ] LoggerTest.LogsToStream -21: [ OK ] LoggerTest.LogsToStream (2 ms) +21: [ OK ] LoggerTest.LogsToStream (0 ms) 21: [ RUN ] LoggerTest.LogsToFile -21: [ OK ] LoggerTest.LogsToFile (1 ms) +21: [ OK ] LoggerTest.LogsToFile (0 ms) 21: [ RUN ] LoggerTest.LevelFilteringWorks 21: [ OK ] LoggerTest.LevelFilteringWorks (0 ms) 21: [ RUN ] LoggerTest.LogsToMultipleStreams 21: [ OK ] LoggerTest.LogsToMultipleStreams (0 ms) -21: [----------] 5 tests from LoggerTest (3 ms total) +21: [----------] 5 tests from LoggerTest (0 ms total) 21: 21: [----------] 4 tests from MutexBasicTest 21: [ RUN ] MutexBasicTest.CanBeMade @@ -54065,7 +54097,7 @@ 21: 21: [----------] 3 tests from MutexTaskTest 21: [ RUN ] MutexTaskTest.MutualExclusionWorksWithLock -21: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (0 ms) +21: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (1 ms) 21: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread 21: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (0 ms) 21: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread @@ -54102,9 +54134,9 @@ 21: [ RUN ] StringUtilityTest.SplitString 21: [ OK ] StringUtilityTest.SplitString (0 ms) 21: [ RUN ] StringUtilityTest.SplitDelimitedString -21: [ OK ] StringUtilityTest.SplitDelimitedString (0 ms) +21: [ OK ] StringUtilityTest.SplitDelimitedString (1 ms) 21: [ RUN ] StringUtilityTest.SplitAndTrimDelimitedString -21: [ OK ] StringUtilityTest.SplitAndTrimDelimitedString (1 ms) +21: [ OK ] StringUtilityTest.SplitAndTrimDelimitedString (0 ms) 21: [----------] 7 tests from StringUtilityTest (1 ms total) 21: 21: [----------] 2 tests from FormatStringTest @@ -54169,9 +54201,9 @@ 21: 21: [----------] 6 tests from TextWriterTest 21: [ RUN ] TextWriterTest.WritesLines -21: [ OK ] TextWriterTest.WritesLines (0 ms) +21: [ OK ] TextWriterTest.WritesLines (1 ms) 21: [ RUN ] TextWriterTest.WritesLinesInParts -21: [ OK ] TextWriterTest.WritesLinesInParts (1 ms) +21: [ OK ] TextWriterTest.WritesLinesInParts (0 ms) 21: [ RUN ] TextWriterTest.WritesWrappedLines 21: [ OK ] TextWriterTest.WritesWrappedLines (0 ms) 21: [ RUN ] TextWriterTest.WritesLinesInPartsWithWrapper @@ -54227,7 +54259,7 @@ 21: [ OK ] BitmaskTest64_10_42/BitmaskTest64.ToHex/0 (0 ms) 21: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.ToHex/1 21: [ OK ] BitmaskTest64_10_42/BitmaskTest64.ToHex/1 (0 ms) -21: [----------] 12 tests from BitmaskTest64_10_42/BitmaskTest64 (0 ms total) +21: [----------] 12 tests from BitmaskTest64_10_42/BitmaskTest64 (1 ms total) 21: 21: [----------] 12 tests from BitmaskTest128_9_78/BitmaskTest128 21: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/0 @@ -54254,11 +54286,11 @@ 21: [ OK ] BitmaskTest128_9_78/BitmaskTest128.ToHex/0 (0 ms) 21: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.ToHex/1 21: [ OK ] BitmaskTest128_9_78/BitmaskTest128.ToHex/1 (0 ms) -21: [----------] 12 tests from BitmaskTest128_9_78/BitmaskTest128 (1 ms total) +21: [----------] 12 tests from BitmaskTest128_9_78/BitmaskTest128 (0 ms total) 21: 21: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 -21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (1 ms) +21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (0 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 (0 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 @@ -54275,7 +54307,7 @@ 21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 (0 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 (0 ms) -21: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (2 ms total) +21: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (1 ms total) 21: 21: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest 21: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 @@ -54289,15 +54321,15 @@ 21: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/4 21: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/4 (0 ms) 21: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5 -21: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5 (1 ms) +21: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5 (0 ms) 21: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6 -21: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6 (0 ms) +21: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6 (1 ms) 21: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest (1 ms total) 21: 21: [----------] Global test environment tear-down -21: [==========] 325 tests from 52 test cases ran. (26 ms total) +21: [==========] 325 tests from 52 test cases ran. (17 ms total) 21: [ PASSED ] 325 tests. -21/27 Test #21: UtilityUnitTests ................. Passed 0.08 sec +21/27 Test #21: UtilityUnitTests ................. Passed 0.06 sec test 22 Start 22: UtilityMpiUnitTests @@ -54309,13 +54341,13 @@ 22: [ RUN ] PhysicalNodeCommunicatorTest.CanConstruct 22: [ OK ] PhysicalNodeCommunicatorTest.CanConstruct (0 ms) 22: [ RUN ] PhysicalNodeCommunicatorTest.CanCallBarrier -22: [ OK ] PhysicalNodeCommunicatorTest.CanCallBarrier (0 ms) -22: [----------] 2 tests from PhysicalNodeCommunicatorTest (0 ms total) +22: [ OK ] PhysicalNodeCommunicatorTest.CanCallBarrier (4 ms) +22: [----------] 2 tests from PhysicalNodeCommunicatorTest (5 ms total) 22: 22: [----------] Global test environment tear-down -22: [==========] 2 tests from 1 test case ran. (1 ms total) +22: [==========] 2 tests from 1 test case ran. (5 ms total) 22: [ PASSED ] 2 tests. -22/27 Test #22: UtilityMpiUnitTests .............. Passed 0.05 sec +22/27 Test #22: UtilityMpiUnitTests .............. Passed 0.08 sec test 23 Start 23: FileIOTests @@ -54325,7 +54357,7 @@ 23: [----------] Global test environment set-up. 23: [----------] 2 tests from FileMD5Test 23: [ RUN ] FileMD5Test.CanComputeMD5 -23: [ OK ] FileMD5Test.CanComputeMD5 (2 ms) +23: [ OK ] FileMD5Test.CanComputeMD5 (1 ms) 23: [ RUN ] FileMD5Test.ReturnsErrorIfFileModeIsWrong 23: [ OK ] FileMD5Test.ReturnsErrorIfFileModeIsWrong (0 ms) 23: [----------] 2 tests from FileMD5Test (2 ms total) @@ -54396,8 +54428,8 @@ 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (3 ms) 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 -23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (0 ms) -23: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (5 ms total) +23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (1 ms) +23: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (6 ms total) 23: 23: [----------] Global test environment tear-down 23: [==========] 17 tests from 4 test cases ran. (8 ms total) @@ -54424,7 +54456,7 @@ 24: [----------] 5 tests from PullTest (0 ms total) 24: 24: [----------] Global test environment tear-down -24: [==========] 5 tests from 1 test case ran. (0 ms total) +24: [==========] 5 tests from 1 test case ran. (1 ms total) 24: [ PASSED ] 5 tests. 24/27 Test #24: PullTest ......................... Passed 0.03 sec test 25 @@ -54441,27 +54473,27 @@ 25: 25: [----------] 1 test from gridTest 25: [ RUN ] gridTest.neighborhood -25: [ OK ] gridTest.neighborhood (2 ms) -25: [----------] 1 test from gridTest (2 ms total) +25: [ OK ] gridTest.neighborhood (1 ms) +25: [----------] 1 test from gridTest (1 ms total) 25: 25: [----------] 8 tests from WithParameters/BiasTest 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/0 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (0 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (1 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/1 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/1 (0 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/1 (1 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/2 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/2 (1 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/2 (0 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/3 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (0 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (1 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/4 25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/4 (1 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/5 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/5 (1 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/5 (0 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/6 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (0 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (1 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/7 25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/7 (1 ms) -25: [----------] 8 tests from WithParameters/BiasTest (5 ms total) +25: [----------] 8 tests from WithParameters/BiasTest (6 ms total) 25: 25: [----------] 2 tests from WithParameters/BiasStateTest 25: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/0 @@ -54592,7 +54624,7 @@ 26: [ OK ] SimdFloatingpointTest.cvtFloat2Double (0 ms) 26: [ RUN ] SimdFloatingpointTest.cvtDouble2Float 26: [ OK ] SimdFloatingpointTest.cvtDouble2Float (0 ms) -26: [----------] 42 tests from SimdFloatingpointTest (0 ms total) +26: [----------] 42 tests from SimdFloatingpointTest (1 ms total) 26: 26: [----------] 16 tests from SimdFloatingpointUtilTest 26: [ RUN ] SimdFloatingpointUtilTest.gatherLoadTranspose4 @@ -54606,7 +54638,7 @@ 26: [ RUN ] SimdFloatingpointUtilTest.transposeScatterIncrU3 26: [ OK ] SimdFloatingpointUtilTest.transposeScatterIncrU3 (0 ms) 26: [ RUN ] SimdFloatingpointUtilTest.transposeScatterIncrU3Overlapping -26: [ OK ] SimdFloatingpointUtilTest.transposeScatterIncrU3Overlapping (1 ms) +26: [ OK ] SimdFloatingpointUtilTest.transposeScatterIncrU3Overlapping (0 ms) 26: [ RUN ] SimdFloatingpointUtilTest.transposeScatterDecrU3 26: [ OK ] SimdFloatingpointUtilTest.transposeScatterDecrU3 (0 ms) 26: [ RUN ] SimdFloatingpointUtilTest.transposeScatterDecrU3Overlapping @@ -54627,7 +54659,7 @@ 26: [ OK ] SimdFloatingpointUtilTest.load4DuplicateN (0 ms) 26: [ RUN ] SimdFloatingpointUtilTest.loadU4NOffset 26: [ OK ] SimdFloatingpointUtilTest.loadU4NOffset (0 ms) -26: [----------] 16 tests from SimdFloatingpointUtilTest (1 ms total) +26: [----------] 16 tests from SimdFloatingpointUtilTest (0 ms total) 26: 26: [----------] 3 tests from SimdVectorOperationsTest 26: [ RUN ] SimdVectorOperationsTest.iprod @@ -54642,7 +54674,7 @@ 26: [ RUN ] SimdMathTest.copysign 26: [ OK ] SimdMathTest.copysign (0 ms) 26: [ RUN ] SimdMathTest.invsqrt -26: [ OK ] SimdMathTest.invsqrt (0 ms) +26: [ OK ] SimdMathTest.invsqrt (1 ms) 26: [ RUN ] SimdMathTest.maskzInvsqrt 26: [ OK ] SimdMathTest.maskzInvsqrt (0 ms) 26: [ RUN ] SimdMathTest.invsqrtPair @@ -54652,19 +54684,19 @@ 26: [ RUN ] SimdMathTest.sqrtUnsafe 26: [ OK ] SimdMathTest.sqrtUnsafe (1 ms) 26: [ RUN ] SimdMathTest.inv -26: [ OK ] SimdMathTest.inv (0 ms) +26: [ OK ] SimdMathTest.inv (1 ms) 26: [ RUN ] SimdMathTest.maskzInv 26: [ OK ] SimdMathTest.maskzInv (0 ms) 26: [ RUN ] SimdMathTest.log -26: [ OK ] SimdMathTest.log (1 ms) +26: [ OK ] SimdMathTest.log (0 ms) 26: [ RUN ] SimdMathTest.exp2 -26: [ OK ] SimdMathTest.exp2 (2 ms) +26: [ OK ] SimdMathTest.exp2 (18 ms) 26: [ RUN ] SimdMathTest.exp2Unsafe 26: [ OK ] SimdMathTest.exp2Unsafe (1 ms) 26: [ RUN ] SimdMathTest.exp 26: [ OK ] SimdMathTest.exp (2 ms) 26: [ RUN ] SimdMathTest.expUnsafe -26: [ OK ] SimdMathTest.expUnsafe (4 ms) +26: [ OK ] SimdMathTest.expUnsafe (1 ms) 26: [ RUN ] SimdMathTest.erf 26: [ OK ] SimdMathTest.erf (1 ms) 26: [ RUN ] SimdMathTest.erfc @@ -54672,9 +54704,9 @@ 26: [ RUN ] SimdMathTest.sin 26: [ OK ] SimdMathTest.sin (2 ms) 26: [ RUN ] SimdMathTest.cos -26: [ OK ] SimdMathTest.cos (2 ms) +26: [ OK ] SimdMathTest.cos (1 ms) 26: [ RUN ] SimdMathTest.tan -26: [ OK ] SimdMathTest.tan (9 ms) +26: [ OK ] SimdMathTest.tan (20 ms) 26: [ RUN ] SimdMathTest.asin 26: [ OK ] SimdMathTest.asin (0 ms) 26: [ RUN ] SimdMathTest.acos @@ -54684,7 +54716,7 @@ 26: [ RUN ] SimdMathTest.atan2 26: [ OK ] SimdMathTest.atan2 (0 ms) 26: [ RUN ] SimdMathTest.pmeForceCorrection -26: [ OK ] SimdMathTest.pmeForceCorrection (2 ms) +26: [ OK ] SimdMathTest.pmeForceCorrection (18 ms) 26: [ RUN ] SimdMathTest.pmePotentialCorrection 26: [ OK ] SimdMathTest.pmePotentialCorrection (2 ms) 26: [ RUN ] SimdMathTest.invsqrtSingleAccuracy @@ -54700,36 +54732,36 @@ 26: [ RUN ] SimdMathTest.logSingleAccuracy 26: [ OK ] SimdMathTest.logSingleAccuracy (0 ms) 26: [ RUN ] SimdMathTest.exp2SingleAccuracy -26: [ OK ] SimdMathTest.exp2SingleAccuracy (6 ms) +26: [ OK ] SimdMathTest.exp2SingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.exp2SingleAccuracyUnsafe -26: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (1 ms) +26: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (0 ms) 26: [ RUN ] SimdMathTest.expSingleAccuracy 26: [ OK ] SimdMathTest.expSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.expSingleAccuracyUnsafe -26: [ OK ] SimdMathTest.expSingleAccuracyUnsafe (1 ms) +26: [ OK ] SimdMathTest.expSingleAccuracyUnsafe (0 ms) 26: [ RUN ] SimdMathTest.erfSingleAccuracy -26: [ OK ] SimdMathTest.erfSingleAccuracy (1 ms) +26: [ OK ] SimdMathTest.erfSingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.erfcSingleAccuracy -26: [ OK ] SimdMathTest.erfcSingleAccuracy (2 ms) +26: [ OK ] SimdMathTest.erfcSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.sinSingleAccuracy -26: [ OK ] SimdMathTest.sinSingleAccuracy (2 ms) +26: [ OK ] SimdMathTest.sinSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.cosSingleAccuracy 26: [ OK ] SimdMathTest.cosSingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.tanSingleAccuracy -26: [ OK ] SimdMathTest.tanSingleAccuracy (8 ms) +26: [ OK ] SimdMathTest.tanSingleAccuracy (9 ms) 26: [ RUN ] SimdMathTest.asinSingleAccuracy -26: [ OK ] SimdMathTest.asinSingleAccuracy (1 ms) +26: [ OK ] SimdMathTest.asinSingleAccuracy (0 ms) 26: [ RUN ] SimdMathTest.acosSingleAccuracy -26: [ OK ] SimdMathTest.acosSingleAccuracy (1 ms) +26: [ OK ] SimdMathTest.acosSingleAccuracy (0 ms) 26: [ RUN ] SimdMathTest.atanSingleAccuracy -26: [ OK ] SimdMathTest.atanSingleAccuracy (1 ms) +26: [ OK ] SimdMathTest.atanSingleAccuracy (0 ms) 26: [ RUN ] SimdMathTest.atan2SingleAccuracy -26: [ OK ] SimdMathTest.atan2SingleAccuracy (0 ms) +26: [ OK ] SimdMathTest.atan2SingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.pmeForceCorrectionSingleAccuracy -26: [ OK ] SimdMathTest.pmeForceCorrectionSingleAccuracy (2 ms) +26: [ OK ] SimdMathTest.pmeForceCorrectionSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.pmePotentialCorrectionSingleAccuracy -26: [ OK ] SimdMathTest.pmePotentialCorrectionSingleAccuracy (3 ms) -26: [----------] 45 tests from SimdMathTest (72 ms total) +26: [ OK ] SimdMathTest.pmePotentialCorrectionSingleAccuracy (2 ms) +26: [----------] 45 tests from SimdMathTest (106 ms total) 26: 26: [----------] 1 test from EmptyArrayRefTest 26: [ RUN ] EmptyArrayRefTest.IsEmpty @@ -54839,7 +54871,7 @@ 26: [ OK ] SimdIntegerTest.cvtB2IB (0 ms) 26: [ RUN ] SimdIntegerTest.cvtIB2B 26: [ OK ] SimdIntegerTest.cvtIB2B (0 ms) -26: [----------] 23 tests from SimdIntegerTest (1 ms total) +26: [----------] 23 tests from SimdIntegerTest (0 ms total) 26: 26: [----------] 32 tests from Simd4FloatingpointTest 26: [ RUN ] Simd4FloatingpointTest.setZero @@ -54917,7 +54949,7 @@ 26: [ RUN ] Simd4MathTest.invsqrt 26: [ OK ] Simd4MathTest.invsqrt (0 ms) 26: [ RUN ] Simd4MathTest.invsqrtSingleaccuracy -26: [ OK ] Simd4MathTest.invsqrtSingleaccuracy (1 ms) +26: [ OK ] Simd4MathTest.invsqrtSingleaccuracy (0 ms) 26: [----------] 2 tests from Simd4MathTest (1 ms total) 26: 26: [----------] 41 tests from SimdScalarTest @@ -55003,7 +55035,7 @@ 26: [ OK ] SimdScalarTest.cvtIB2B (0 ms) 26: [ RUN ] SimdScalarTest.expandScalarsToTriplets 26: [ OK ] SimdScalarTest.expandScalarsToTriplets (0 ms) -26: [----------] 41 tests from SimdScalarTest (0 ms total) +26: [----------] 41 tests from SimdScalarTest (1 ms total) 26: 26: [----------] 8 tests from SimdScalarUtilTest 26: [ RUN ] SimdScalarUtilTest.gatherLoadTranspose @@ -55022,7 +55054,7 @@ 26: [ OK ] SimdScalarUtilTest.gatherLoadUBySimdIntTranspose (0 ms) 26: [ RUN ] SimdScalarUtilTest.reduceIncr4ReturnSum 26: [ OK ] SimdScalarUtilTest.reduceIncr4ReturnSum (0 ms) -26: [----------] 8 tests from SimdScalarUtilTest (1 ms total) +26: [----------] 8 tests from SimdScalarUtilTest (0 ms total) 26: 26: [----------] 37 tests from SimdScalarMathTest 26: [ RUN ] SimdScalarMathTest.copysign @@ -55099,12 +55131,12 @@ 26: [ OK ] SimdScalarMathTest.pmeForceCorrectionSingleAccuracy (0 ms) 26: [ RUN ] SimdScalarMathTest.pmePotentialCorrectionSingleAccuracy 26: [ OK ] SimdScalarMathTest.pmePotentialCorrectionSingleAccuracy (0 ms) -26: [----------] 37 tests from SimdScalarMathTest (0 ms total) +26: [----------] 37 tests from SimdScalarMathTest (1 ms total) 26: 26: [----------] Global test environment tear-down -26: [==========] 277 tests from 22 test cases ran. (78 ms total) +26: [==========] 277 tests from 22 test cases ran. (112 ms total) 26: [ PASSED ] 277 tests. -26/27 Test #26: SimdUnitTests .................... Passed 0.12 sec +26/27 Test #26: SimdUnitTests .................... Passed 0.16 sec test 27 Start 27: CompatibilityHelpersTests @@ -55120,7 +55152,7 @@ 27: [----------] 1 test from NotNullConstruction 27: [ RUN ] NotNullConstruction.Works 27: [ OK ] NotNullConstruction.Works (0 ms) -27: [----------] 1 test from NotNullConstruction (0 ms total) +27: [----------] 1 test from NotNullConstruction (1 ms total) 27: 27: [----------] 1 test from NotNullCasting 27: [ RUN ] NotNullCasting.Works @@ -55143,18 +55175,18 @@ 27: [----------] 1 test from NotNull (0 ms total) 27: 27: [----------] Global test environment tear-down -27: [==========] 6 tests from 6 test cases ran. (0 ms total) +27: [==========] 6 tests from 6 test cases ran. (1 ms total) 27: [ PASSED ] 6 tests. -27/27 Test #27: CompatibilityHelpersTests ........ Passed 0.03 sec +27/27 Test #27: CompatibilityHelpersTests ........ Passed 0.04 sec 100% tests passed, 0 tests failed out of 27 Label Time Summary: -GTest = 2.21 sec*proc (27 tests) -MpiTest = 0.19 sec*proc (3 tests) -UnitTest = 2.21 sec*proc (27 tests) +GTest = 1.86 sec*proc (27 tests) +MpiTest = 0.17 sec*proc (3 tests) +UnitTest = 1.86 sec*proc (27 tests) -Total Test time (real) = 2.26 sec +Total Test time (real) = 1.89 sec /usr/bin/make -j8 -C build/mpich-dp tests make[1]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' /usr/bin/cmake -S/build/gromacs-2019.1 -B/build/gromacs-2019.1/build/mpich-dp --check-build-system CMakeFiles/Makefile.cmake 0 @@ -55169,59 +55201,59 @@ make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs /build/gromacs-2019.1/build/mpich-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs /build/gromacs-2019.1/build/mpich-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend /usr/bin/make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs /build/gromacs-2019.1/build/mpich-dp/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/external/googletest /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/external/googletest /build/gromacs-2019.1/build/mpich-dp/src/external/googletest/CMakeFiles/gmock.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' -cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs /build/gromacs-2019.1/build/mpich-dp/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' -cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs /build/gromacs-2019.1/build/mpich-dp/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' +[ 1%] Built target lmfit_objlib make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -[ 1%] Built target lmfit_objlib +[ 2%] Built target libgromacs_external +Scanning dependencies of target onlinehelp-test-shared make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build Scanning dependencies of target gmock make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/mock_helptopic.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -[ 3%] Built target tng_io_obj /usr/bin/make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/build +[ 4%] Built target tng_io_obj make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/external/googletest && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googlemock -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/googletest/googletest -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o -c /build/gromacs-2019.1/src/external/googletest/googlemock/src/gmock-all.cc -cd /build/gromacs-2019.1/build/mpich-dp/src/external/googletest && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googlemock -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/googletest/googletest -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o -c /build/gromacs-2019.1/src/external/googletest/googletest/src/gtest-all.cc make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build -Scanning dependencies of target onlinehelp-test-shared -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build -[ 4%] Built target libgromacs_external +cd /build/gromacs-2019.1/build/mpich-dp/src/external/googletest && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googlemock -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/googletest/googletest -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o -c /build/gromacs-2019.1/src/external/googletest/googletest/src/gtest-all.cc Scanning dependencies of target mdrunutility-test-shared make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/mock_helptopic.cpp -make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' [ 22%] Built target libgromacs_generated @@ -55279,107 +55311,108 @@ [ 83%] Built target testutils /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend +/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend +/usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend +/usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/compat/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/compat/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/testutils/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/testutils/tests /build/gromacs-2019.1/build/mpich-dp/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend +/usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/testutils/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/testutils/tests /build/gromacs-2019.1/build/mpich-dp/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend -/usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdlib/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/applied-forces/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/applied-forces/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/listed-forces/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/listed-forces/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend +/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/commandline/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/domdec/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/domdec/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= -Scanning dependencies of target compat-test Scanning dependencies of target testutils-mpi-test -Scanning dependencies of target domdec-test +Scanning dependencies of target compat-test make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' +Scanning dependencies of target testutils-test make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build -/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/make_unique.cpp.o -c /build/gromacs-2019.1/src/gromacs/compat/tests/make_unique.cpp make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/mpitest.cpp make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/make_unique.cpp.o -c /build/gromacs-2019.1/src/gromacs/compat/tests/make_unique.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/interactivetest.cpp Scanning dependencies of target listed-forces-test +Scanning dependencies of target domdec-test make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' /usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build -make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/domdec/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /build/gromacs-2019.1/src/gromacs/domdec/tests/hashedmap.cpp -make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/listed-forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/bonded.cpp.o -c /build/gromacs-2019.1/src/gromacs/listed-forces/tests/bonded.cpp Scanning dependencies of target applied-forces-test +Scanning dependencies of target mdlib-test make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -/usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build -Scanning dependencies of target testutils-test +/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -Scanning dependencies of target commandline-test -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -/usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build +/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build +/usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/applied-forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/electricfield.cpp.o -c /build/gromacs-2019.1/src/gromacs/applied-forces/tests/electricfield.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/listed-forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/bonded.cpp.o -c /build/gromacs-2019.1/src/gromacs/listed-forces/tests/bonded.cpp make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' -cd /build/gromacs-2019.1/build/mpich-dp/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/interactivetest.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/domdec/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /build/gromacs-2019.1/src/gromacs/domdec/tests/hashedmap.cpp make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp -Scanning dependencies of target mdlib-test +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/calc_verletbuf.cpp +Scanning dependencies of target commandline-test +make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/applied-forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/electricfield.cpp.o -c /build/gromacs-2019.1/src/gromacs/applied-forces/tests/electricfield.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build +/usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/calc_verletbuf.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /build/gromacs-2019.1/src/gromacs/compat/tests/pointers.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/listed-forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/mdebin.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/mdebin.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/listed-forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/listed-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed-forces-test.dir/link.txt --verbose=1 cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/domdec/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/domdec/tests/localatomsetmanager.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/refdata_tests.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/listed-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed-forces-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/listed-forces-test.dir/bonded.cpp.o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' [ 83%] Built target testutils-mpi-test /usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/ewald/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp Scanning dependencies of target ewald-test make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' /usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmebsplinetest.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/refdata_tests.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/applied-forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/settle.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/compat-test.dir/make_unique.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/settle.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/applied-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied-forces-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/applied-forces-test.dir/electricfield.cpp.o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' [ 84%] Built target compat-test /usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/fft/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/fft/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= -/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/applied-forces-test.dir/electricfield.cpp.o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread Scanning dependencies of target fft-test make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' /usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/fft/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/fft/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/fft.cpp.o -c /build/gromacs-2019.1/src/gromacs/fft/tests/fft.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -[ 84%] Built target listed-forces-test +[ 84%] Built target applied-forces-test /usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/gpu_utils/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/gpu_utils/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= @@ -55390,15 +55423,7 @@ cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/gputest.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/domdec/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -[ 84%] Built target applied-forces-test -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/hostallocator.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/devicetransfers.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -[ 84%] Built target domdec-test +[ 84%] Built target listed-forces-test /usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/hardware/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/hardware/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= @@ -55407,6 +55432,11 @@ /usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/hardware/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /build/gromacs-2019.1/src/gromacs/hardware/tests/hardwaretopology.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/hostallocator.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' +[ 84%] Built target domdec-test /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/math/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= @@ -55417,10 +55447,14 @@ cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/arrayrefwithpadding.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/fft/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/fft/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmegathertest.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/testasserts_tests.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmegathertest.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/hardware/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/shake.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' [ 85%] Built target fft-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend @@ -55431,10 +55465,6 @@ /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinity.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/shake.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/hardware/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' [ 85%] Built target hardware-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend @@ -55449,13 +55479,10 @@ cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/dofit.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/dofit.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/functions.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/functions.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/simulationsignal.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' [ 86%] Built target testutils-test /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend @@ -55466,9 +55493,20 @@ /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpformat.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/simulationsignal.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmesolvetest.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' [ 86%] Built target mdrunutility-test +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmesplinespreadtest.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpmanager.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/updategroups.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' +[ 86%] Built target mdrunutility-mpi-test /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/options/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= @@ -55477,13 +55515,23 @@ /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/abstractoptionstorage.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpmanager.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/updategroups.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlineparser.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/invertmatrix.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpwritercontext.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/updategroupscog.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/devicetransfers.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/paddedvector.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmetestcommon.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp +/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -[ 86%] Built target mdrunutility-mpi-test +[ 86%] Built target gpu_utils-test /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/random/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= @@ -55492,12 +55540,9 @@ /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/exponentialdistribution.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/invertmatrix.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlineparser.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/testhardwarecontexts.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -[ 86%] Built target gpu_utils-test +[ 87%] Built target onlinehelp-test /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/restraint/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/restraint/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake --color= @@ -55506,18 +55551,16 @@ /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/restraint/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /build/gromacs-2019.1/src/gromacs/restraint/tests/manager.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/updategroupscog.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpwritercontext.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/gammadistribution.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/paddedvector.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/mdebin.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/pargs.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/restraint/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmesplinespreadtest.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -[ 87%] Built target restraintpotential-test +[ 88%] Built target mdlib-test /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/tables/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/tables/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= @@ -55526,25 +55569,20 @@ /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/tables/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/tables/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /build/gromacs-2019.1/src/gromacs/tables/tests/splinetable.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/mdebin.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -[ 88%] Built target onlinehelp-test +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/filenameoption.cpp /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/taskassignment/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/taskassignment/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= Scanning dependencies of target taskassignment-test +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /build/gromacs-2019.1/src/gromacs/taskassignment/tests/usergpuids.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/filenameoption.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/normaldistribution.cpp +/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/gammadistribution.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -[ 89%] Built target mdlib-test +[ 89%] Built target ewald-test /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/utility/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake --color= @@ -55553,13 +55591,8 @@ /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/physicalnodecommunicator-mpi.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/pargs.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/filenameoptionmanager.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -[ 90%] Built target utility-mpi-test +[ 90%] Built target restraintpotential-test /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/utility/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= @@ -55568,14 +55601,11 @@ /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/alignedallocator.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/seed.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/seed.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmetestcommon.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -[ 91%] Built target taskassignment-test +[ 91%] Built target utility-mpi-test /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/fileio/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/fileio/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= @@ -55584,9 +55614,11 @@ /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/confio.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/tabulatednormaldistribution.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/normaldistribution.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/filenameoptionmanager.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' [ 92%] Built target commandline-test /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend @@ -55597,19 +55629,10 @@ /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/pulling/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/pull.cpp.o -c /build/gromacs-2019.1/src/gromacs/pulling/tests/pull.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/testhardwarecontexts.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/filemd5.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/pulling/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/option.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/option.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/readinp.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/threefry.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -[ 92%] Built target pull-test +[ 93%] Built target taskassignment-test /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/awh/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/awh/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= @@ -55618,17 +55641,16 @@ /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/bias.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/bias.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -[ 93%] Built target ewald-test -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformintdistribution.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/filemd5.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/arrayref.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/optionsassigner.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/pulling/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/seed.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/seed.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/readinp.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/vectypes.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/tables/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/tables/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -[ 93%] Built target table-test +[ 93%] Built target pull-test /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/simd/tests /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= @@ -55637,68 +55659,78 @@ /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/bootstrap_loadstore.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/tabulatednormaldistribution.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/option.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/option.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/tngio.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformrealdistribution.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/base.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/base.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/optionsassigner.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/biasstate.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/tables/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/tables/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -[ 93%] Built target fileio-test +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/biasstate.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/grid.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/grid.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -[ 93%] Built target math-test -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_floatingpoint.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -[ 94%] Built target random-test +[ 93%] Built target fileio-test +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_floatingpoint.cpp +[ 93%] Built target table-test cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_floatingpoint_util.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/threefry.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' +[ 93%] Built target math-test +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformintdistribution.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/grid.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/grid.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_vector_operations.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_math.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_memory.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_integer.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformrealdistribution.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/repeatingsection.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_math.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -[ 94%] Built target awh-test -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/timeunitmanager.cpp +[ 93%] Built target awh-test +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_memory.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_integer.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4_floatingpoint.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4_vector_operations.cpp +/usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4_math.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' +[ 94%] Built target random-test cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/scalar.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/repeatingsection.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/scalar_util.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/treesupport.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask32.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/scalar_math.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/timeunitmanager.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/treesupport.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask32.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask64.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask128.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/keyvaluetreeserializer.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/keyvaluetreetransform.cpp -cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/gmxregex.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/gmxregex.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' [ 96%] Built target simd-test +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/keyvaluetreeserializer.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/keyvaluetreetransform.cpp +cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/gmxregex.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/gmxregex.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/logger.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/logger.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/mutex.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -[ 97%] Built target options-test cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/path.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/path.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/physicalnodecommunicator.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' +[ 97%] Built target options-test cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/stringutil.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/textreader.cpp cd /build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/mpich-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/textwriter.cpp @@ -55745,36 +55777,36 @@ 1: [ RUN ] InteractiveTestHelperTest.ChecksSimpleSession 1: [ OK ] InteractiveTestHelperTest.ChecksSimpleSession (1 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline -1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline (1 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline (0 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput -1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput (0 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput -1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput (1 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsIncorrectOutput -1: [ OK ] InteractiveTestHelperTest.DetectsIncorrectOutput (0 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsIncorrectOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingOutput -1: [ OK ] InteractiveTestHelperTest.DetectsMissingOutput (1 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsMissingOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingFinalOutput -1: [ OK ] InteractiveTestHelperTest.DetectsMissingFinalOutput (5 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsMissingFinalOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraOutput -1: [ OK ] InteractiveTestHelperTest.DetectsExtraOutput (1 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsExtraOutput (5 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingInput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingInput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraInput -1: [ OK ] InteractiveTestHelperTest.DetectsExtraInput (0 ms) -1: [----------] 10 tests from InteractiveTestHelperTest (10 ms total) +1: [ OK ] InteractiveTestHelperTest.DetectsExtraInput (1 ms) +1: [----------] 10 tests from InteractiveTestHelperTest (11 ms total) 1: 1: [----------] 34 tests from ReferenceDataTest 1: [ RUN ] ReferenceDataTest.HandlesSimpleData -1: [ OK ] ReferenceDataTest.HandlesSimpleData (1 ms) +1: [ OK ] ReferenceDataTest.HandlesSimpleData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesFloatingPointData 1: [ OK ] ReferenceDataTest.HandlesFloatingPointData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesPresenceChecks -1: [ OK ] ReferenceDataTest.HandlesPresenceChecks (0 ms) +1: [ OK ] ReferenceDataTest.HandlesPresenceChecks (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesStringBlockData 1: [ OK ] ReferenceDataTest.HandlesStringBlockData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVectorData -1: [ OK ] ReferenceDataTest.HandlesVectorData (1 ms) +1: [ OK ] ReferenceDataTest.HandlesVectorData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceData 1: [ OK ] ReferenceDataTest.HandlesSequenceData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceOfCustomData @@ -55786,41 +55818,41 @@ 1: [ RUN ] ReferenceDataTest.HandlesMissingData 1: [ OK ] ReferenceDataTest.HandlesMissingData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedData -1: [ OK ] ReferenceDataTest.HandlesUncheckedData (0 ms) +1: [ OK ] ReferenceDataTest.HandlesUncheckedData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInSequence 1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInSequence (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInCompound -1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInCompound (1 ms) +1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInCompound (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariants -1: [ OK ] ReferenceDataTest.HandlesVariants (0 ms) +1: [ OK ] ReferenceDataTest.HandlesVariants (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTree 1: [ OK ] ReferenceDataTest.HandlesKeyValueTree (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeExtraKey -1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeExtraKey (1 ms) +1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeExtraKey (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeMissingKey 1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeMissingKey (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectValue -1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectValue (1 ms) +1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectValue (2 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectType 1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectType (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingReferenceDataFile 1: [ OK ] ReferenceDataTest.HandlesMissingReferenceDataFile (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSpecialCharactersInStrings -1: [ OK ] ReferenceDataTest.HandlesSpecialCharactersInStrings (1 ms) +1: [ OK ] ReferenceDataTest.HandlesSpecialCharactersInStrings (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace -1: [ OK ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace (0 ms) +1: [ OK ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmptyStrings 1: [ OK ] ReferenceDataTest.HandlesEmptyStrings (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock -1: [ OK ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock (1 ms) +1: [ OK ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceItemIndices 1: [ OK ] ReferenceDataTest.HandlesSequenceItemIndices (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData -1: [ OK ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData (1 ms) +1: [ OK ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleNullIds -1: [ OK ] ReferenceDataTest.HandlesMultipleNullIds (0 ms) +1: [ OK ] ReferenceDataTest.HandlesMultipleNullIds (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds -1: [ OK ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds (1 ms) +1: [ OK ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesReadingValues 1: [ OK ] ReferenceDataTest.HandlesReadingValues (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges @@ -55828,16 +55860,16 @@ 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges (0 ms) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (1 ms) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (1 ms) -1: [----------] 34 tests from ReferenceDataTest (15 ms total) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (0 ms) +1: [----------] 34 tests from ReferenceDataTest (12 ms total) 1: 1: [----------] 7 tests from FloatingPointDifferenceTest 1: [ RUN ] FloatingPointDifferenceTest.HandlesEqualValues -1: [ OK ] FloatingPointDifferenceTest.HandlesEqualValues (0 ms) +1: [ OK ] FloatingPointDifferenceTest.HandlesEqualValues (1 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesFloatValues 1: [ OK ] FloatingPointDifferenceTest.HandlesFloatValues (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesZerosOfDifferentSign @@ -55850,7 +55882,7 @@ 1: [ OK ] FloatingPointDifferenceTest.HandlesUlpDifferenceAcrossZero (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesNaN 1: [ OK ] FloatingPointDifferenceTest.HandlesNaN (0 ms) -1: [----------] 7 tests from FloatingPointDifferenceTest (0 ms total) +1: [----------] 7 tests from FloatingPointDifferenceTest (1 ms total) 1: 1: [----------] 4 tests from FloatingPointToleranceTest 1: [ RUN ] FloatingPointToleranceTest.UlpTolerance @@ -55865,17 +55897,17 @@ 1: 1: [----------] 4 tests from XvgTests 1: [ RUN ] XvgTests.CreateFile -1: [ OK ] XvgTests.CreateFile (1 ms) +1: [ OK ] XvgTests.CreateFile (0 ms) 1: [ RUN ] XvgTests.CheckMissing -1: [ OK ] XvgTests.CheckMissing (0 ms) +1: [ OK ] XvgTests.CheckMissing (1 ms) 1: [ RUN ] XvgTests.CheckExtra 1: [ OK ] XvgTests.CheckExtra (1 ms) 1: [ RUN ] XvgTests.ReadIncorrect -1: [ OK ] XvgTests.ReadIncorrect (1 ms) -1: [----------] 4 tests from XvgTests (3 ms total) +1: [ OK ] XvgTests.ReadIncorrect (0 ms) +1: [----------] 4 tests from XvgTests (2 ms total) 1: 1: [----------] Global test environment tear-down -1: [==========] 59 tests from 5 test cases ran. (29 ms total) +1: [==========] 59 tests from 5 test cases ran. (26 ms total) 1: [ PASSED ] 59 tests. 1/27 Test #1: TestUtilsUnitTests ............... Passed 0.06 sec test 2 @@ -55888,12 +55920,12 @@ 2: [----------] 1 test from MpiSelfTest 2: [ RUN ] MpiSelfTest.Runs 2: [ OK ] MpiSelfTest.Runs (0 ms) -2: [----------] 1 test from MpiSelfTest (1 ms total) +2: [----------] 1 test from MpiSelfTest (0 ms total) 2: 2: [----------] Global test environment tear-down -2: [==========] 1 test from 1 test case ran. (1 ms total) +2: [==========] 1 test from 1 test case ran. (0 ms total) 2: [ PASSED ] 1 test. - 2/27 Test #2: TestUtilsMpiUnitTests ............ Passed 0.07 sec + 2/27 Test #2: TestUtilsMpiUnitTests ............ Passed 0.11 sec test 3 Start 3: MdlibUnitTest @@ -55910,10 +55942,10 @@ 3: [ RUN ] PrintEbin.print_ebin_HandlesEmptyAverages 3: [ OK ] PrintEbin.print_ebin_HandlesEmptyAverages (0 ms) 3: [ RUN ] PrintEbin.pr_ebin_HandlesAverages -3: [ OK ] PrintEbin.pr_ebin_HandlesAverages (5 ms) +3: [ OK ] PrintEbin.pr_ebin_HandlesAverages (0 ms) 3: [ RUN ] PrintEbin.pr_ebin_HandlesEmptyAverages -3: [ OK ] PrintEbin.pr_ebin_HandlesEmptyAverages (0 ms) -3: [----------] 3 tests from PrintEbin (5 ms total) +3: [ OK ] PrintEbin.pr_ebin_HandlesEmptyAverages (1 ms) +3: [----------] 3 tests from PrintEbin (1 ms total) 3: 3: [----------] 4 tests from ShakeTest 3: [ RUN ] ShakeTest.ConstrainsOneBond @@ -55945,8 +55977,8 @@ 3: [ RUN ] SignalTest.NonLocalSignalPropagatesWhenInterSimSignalTakesPlace 3: [ OK ] SignalTest.NonLocalSignalPropagatesWhenInterSimSignalTakesPlace (0 ms) 3: [ RUN ] SignalTest.NonLocalSignalPropagatesWhenBothTakePlace -3: [ OK ] SignalTest.NonLocalSignalPropagatesWhenBothTakePlace (1 ms) -3: [----------] 7 tests from SignalTest (1 ms total) +3: [ OK ] SignalTest.NonLocalSignalPropagatesWhenBothTakePlace (0 ms) +3: [----------] 7 tests from SignalTest (0 ms total) 3: 3: [----------] 9 tests from UpdateGroups 3: [ RUN ] UpdateGroups.ethaneUA @@ -55971,12 +56003,12 @@ 3: 3: [----------] 1 test from UpdateGroupsCog 3: [ RUN ] UpdateGroupsCog.ComputesCogs -3: [ OK ] UpdateGroupsCog.ComputesCogs (1 ms) -3: [----------] 1 test from UpdateGroupsCog (1 ms total) +3: [ OK ] UpdateGroupsCog.ComputesCogs (5 ms) +3: [----------] 1 test from UpdateGroupsCog (5 ms total) 3: 3: [----------] 24 tests from WithParameters/SettleTest 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/0 -3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/0 (0 ms) +3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/0 (1 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/1 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/1 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/2 @@ -56002,7 +56034,7 @@ 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/12 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/12 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/13 -3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/13 (1 ms) +3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/13 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/14 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/14 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/15 @@ -56026,9 +56058,9 @@ 3: [----------] 24 tests from WithParameters/SettleTest (1 ms total) 3: 3: [----------] Global test environment tear-down -3: [==========] 50 tests from 8 test cases ran. (8 ms total) +3: [==========] 50 tests from 8 test cases ran. (9 ms total) 3: [ PASSED ] 50 tests. - 3/27 Test #3: MdlibUnitTest .................... Passed 0.05 sec + 3/27 Test #3: MdlibUnitTest .................... Passed 0.04 sec test 4 Start 4: AppliedForcesUnitTest @@ -56038,17 +56070,17 @@ 4: [----------] Global test environment set-up. 4: [----------] 3 tests from ElectricFieldTest 4: [ RUN ] ElectricFieldTest.Static -4: [ OK ] ElectricFieldTest.Static (0 ms) +4: [ OK ] ElectricFieldTest.Static (1 ms) 4: [ RUN ] ElectricFieldTest.Oscillating -4: [ OK ] ElectricFieldTest.Oscillating (5 ms) +4: [ OK ] ElectricFieldTest.Oscillating (0 ms) 4: [ RUN ] ElectricFieldTest.Pulsed -4: [ OK ] ElectricFieldTest.Pulsed (0 ms) -4: [----------] 3 tests from ElectricFieldTest (5 ms total) +4: [ OK ] ElectricFieldTest.Pulsed (1 ms) +4: [----------] 3 tests from ElectricFieldTest (2 ms total) 4: 4: [----------] Global test environment tear-down -4: [==========] 3 tests from 1 test case ran. (5 ms total) +4: [==========] 3 tests from 1 test case ran. (2 ms total) 4: [ PASSED ] 3 tests. - 4/27 Test #4: AppliedForcesUnitTest ............ Passed 0.04 sec + 4/27 Test #4: AppliedForcesUnitTest ............ Passed 0.03 sec test 5 Start 5: ListedForcesTest @@ -56058,11 +56090,11 @@ 5: [----------] Global test environment set-up. 5: [----------] 15 tests from BondedTest 5: [ RUN ] BondedTest.BondAnglePbcNone -5: [ OK ] BondedTest.BondAnglePbcNone (1 ms) +5: [ OK ] BondedTest.BondAnglePbcNone (0 ms) 5: [ RUN ] BondedTest.BondAnglePbcXy 5: [ OK ] BondedTest.BondAnglePbcXy (0 ms) 5: [ RUN ] BondedTest.BondAnglePbcXyz -5: [ OK ] BondedTest.BondAnglePbcXyz (0 ms) +5: [ OK ] BondedTest.BondAnglePbcXyz (1 ms) 5: [ RUN ] BondedTest.DihedralAnglePbcNone 5: [ OK ] BondedTest.DihedralAnglePbcNone (0 ms) 5: [ RUN ] BondedTest.DihedralAnglePbcXy @@ -56072,7 +56104,7 @@ 5: [ RUN ] BondedTest.IfuncBondsPbcNo 5: [ OK ] BondedTest.IfuncBondsPbcNo (0 ms) 5: [ RUN ] BondedTest.IfuncBondsPbcXy -5: [ OK ] BondedTest.IfuncBondsPbcXy (1 ms) +5: [ OK ] BondedTest.IfuncBondsPbcXy (0 ms) 5: [ RUN ] BondedTest.IfuncBondsPbcXyz 5: [ OK ] BondedTest.IfuncBondsPbcXyz (0 ms) 5: [ RUN ] BondedTest.IfuncAnglesPbcNo @@ -56082,7 +56114,7 @@ 5: [ RUN ] BondedTest.IfuncAnglesPbcXYZ 5: [ OK ] BondedTest.IfuncAnglesPbcXYZ (0 ms) 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcNo -5: [ OK ] BondedTest.IfuncProperDihedralsPbcNo (0 ms) +5: [ OK ] BondedTest.IfuncProperDihedralsPbcNo (1 ms) 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcXy 5: [ OK ] BondedTest.IfuncProperDihedralsPbcXy (0 ms) 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcXyz @@ -56092,7 +56124,7 @@ 5: [----------] Global test environment tear-down 5: [==========] 15 tests from 1 test case ran. (2 ms total) 5: [ PASSED ] 15 tests. - 5/27 Test #5: ListedForcesTest ................. Passed 0.05 sec + 5/27 Test #5: ListedForcesTest ................. Passed 0.04 sec test 6 Start 6: CommandLineUnitTests @@ -56104,9 +56136,9 @@ 6: [ RUN ] CommandLineHelpModuleTest.PrintsGeneralHelp 6: [ OK ] CommandLineHelpModuleTest.PrintsGeneralHelp (1 ms) 6: [ RUN ] CommandLineHelpModuleTest.PrintsHelpOnTopic -6: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (1 ms) +6: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (0 ms) 6: [ RUN ] CommandLineHelpModuleTest.ExportsHelp -6: [ OK ] CommandLineHelpModuleTest.ExportsHelp (1 ms) +6: [ OK ] CommandLineHelpModuleTest.ExportsHelp (2 ms) 6: [----------] 3 tests from CommandLineHelpModuleTest (3 ms total) 6: 6: [----------] 6 tests from CommandLineHelpWriterTest @@ -56115,29 +56147,29 @@ 6: [ RUN ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables 6: [ OK ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesLongFileOptions -6: [ OK ] CommandLineHelpWriterTest.HandlesLongFileOptions (1 ms) +6: [ OK ] CommandLineHelpWriterTest.HandlesLongFileOptions (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesLongOptions -6: [ OK ] CommandLineHelpWriterTest.HandlesLongOptions (0 ms) +6: [ OK ] CommandLineHelpWriterTest.HandlesLongOptions (1 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesOptionGroups 6: [ OK ] CommandLineHelpWriterTest.HandlesOptionGroups (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesHelpText -6: [ OK ] CommandLineHelpWriterTest.HandlesHelpText (5 ms) -6: [----------] 6 tests from CommandLineHelpWriterTest (7 ms total) +6: [ OK ] CommandLineHelpWriterTest.HandlesHelpText (0 ms) +6: [----------] 6 tests from CommandLineHelpWriterTest (2 ms total) 6: 6: [----------] 6 tests from CommandLineModuleManagerTest 6: [ RUN ] CommandLineModuleManagerTest.RunsModule -6: [ OK ] CommandLineModuleManagerTest.RunsModule (1 ms) +6: [ OK ] CommandLineModuleManagerTest.RunsModule (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelp -6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelp (0 ms) +6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelp (1 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule -6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule (1 ms) +6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames 6: [ OK ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames (0 ms) -6: [----------] 6 tests from CommandLineModuleManagerTest (2 ms total) +6: [----------] 6 tests from CommandLineModuleManagerTest (1 ms total) 6: 6: [----------] 13 tests from CommandLineParserTest 6: [ RUN ] CommandLineParserTest.HandlesSingleValues @@ -56153,7 +56185,7 @@ 6: [ RUN ] CommandLineParserTest.HandlesString 6: [ OK ] CommandLineParserTest.HandlesString (0 ms) 6: [ RUN ] CommandLineParserTest.RejectsStringWithMultipleValues -6: [ OK ] CommandLineParserTest.RejectsStringWithMultipleValues (1 ms) +6: [ OK ] CommandLineParserTest.RejectsStringWithMultipleValues (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesDoubleDashOptionPrefix 6: [ OK ] CommandLineParserTest.HandlesDoubleDashOptionPrefix (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesOptionsStartingWithNumbers @@ -56161,7 +56193,7 @@ 6: [ RUN ] CommandLineParserTest.HandlesSkipUnknown 6: [ OK ] CommandLineParserTest.HandlesSkipUnknown (0 ms) 6: [ RUN ] CommandLineParserTest.RejectsPositionalArgumentsByDefault -6: [ OK ] CommandLineParserTest.RejectsPositionalArgumentsByDefault (0 ms) +6: [ OK ] CommandLineParserTest.RejectsPositionalArgumentsByDefault (1 ms) 6: [ RUN ] CommandLineParserTest.CanAllowPositionalArguments 6: [ OK ] CommandLineParserTest.CanAllowPositionalArguments (0 ms) 6: [ RUN ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions @@ -56178,10 +56210,10 @@ 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromCurrentDirectory 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromCurrentDirectory (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink -6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink (1 ms) +6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink (0 ms) -6: [----------] 6 tests from CommandLineProgramContextTest (1 ms total) +6: [----------] 6 tests from CommandLineProgramContextTest (0 ms total) 6: 6: [----------] 21 tests from ParseCommonArgsTest 6: [ RUN ] ParseCommonArgsTest.ParsesIntegerArgs @@ -56195,9 +56227,9 @@ 6: [ RUN ] ParseCommonArgsTest.ParsesBooleanArgs 6: [ OK ] ParseCommonArgsTest.ParsesBooleanArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesVectorArgs -6: [ OK ] ParseCommonArgsTest.ParsesVectorArgs (0 ms) +6: [ OK ] ParseCommonArgsTest.ParsesVectorArgs (1 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesTimeArgs -6: [ OK ] ParseCommonArgsTest.ParsesTimeArgs (1 ms) +6: [ OK ] ParseCommonArgsTest.ParsesTimeArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesTimeArgsWithTimeUnit 6: [ OK ] ParseCommonArgsTest.ParsesTimeArgsWithTimeUnit (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesEnumArgs @@ -56223,13 +56255,13 @@ 6: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFile 6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (1 ms) 6: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName -6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (1 ms) +6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (0 ms) 6: [ RUN ] ParseCommonArgsTest.CanKeepUnknownArgs -6: [ OK ] ParseCommonArgsTest.CanKeepUnknownArgs (0 ms) +6: [ OK ] ParseCommonArgsTest.CanKeepUnknownArgs (1 ms) 6: [----------] 21 tests from ParseCommonArgsTest (4 ms total) 6: 6: [----------] Global test environment tear-down -6: [==========] 55 tests from 6 test cases ran. (18 ms total) +6: [==========] 55 tests from 6 test cases ran. (12 ms total) 6: [ PASSED ] 55 tests. 6/27 Test #6: CommandLineUnitTests ............. Passed 0.05 sec test 7 @@ -56264,9 +56296,9 @@ 7: [----------] 2 tests from LocalAtomSetManager (0 ms total) 7: 7: [----------] Global test environment tear-down -7: [==========] 9 tests from 2 test cases ran. (1 ms total) +7: [==========] 9 tests from 2 test cases ran. (0 ms total) 7: [ PASSED ] 9 tests. - 7/27 Test #7: DomDecTests ...................... Passed 0.04 sec + 7/27 Test #7: DomDecTests ...................... Passed 0.03 sec test 8 Start 8: EwaldUnitTests @@ -56289,15 +56321,15 @@ 8: 8: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (8 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (5 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (3 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (3 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (3 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (3 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 @@ -56305,15 +56337,15 @@ 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (10 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (6 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 @@ -56325,24 +56357,24 @@ 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (3 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (1 ms) -8: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (66 ms total) +8: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (58 ms total) 8: 8: [----------] 144 tests from SaneInput/PmeGatherTest 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/0 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/0 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/1 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/1 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/1 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/2 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/2 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/3 @@ -56354,25 +56386,25 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/6 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/6 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/7 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/7 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/7 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/8 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/8 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/8 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/9 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/9 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/9 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/10 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/11 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/12 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/13 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/13 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/13 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/14 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/14 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/14 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/15 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/15 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/15 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/16 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/16 (5 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/16 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/17 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/17 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/18 @@ -56382,9 +56414,9 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/20 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/20 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/21 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/21 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/21 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/22 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/23 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/24 @@ -56432,25 +56464,25 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/45 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/45 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/46 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/46 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/46 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/47 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/47 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/47 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/48 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/48 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/48 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/49 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/49 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/49 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/50 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/50 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/50 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/51 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/51 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/52 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/52 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/52 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/53 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/53 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/54 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/54 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/54 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/55 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/55 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/55 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/56 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/56 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/57 @@ -56476,119 +56508,119 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/67 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/68 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/69 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/70 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/70 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/70 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/71 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/72 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/72 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/72 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/73 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/73 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/74 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/74 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/74 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/75 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/75 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/75 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/76 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/76 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/76 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/77 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/77 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/77 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/78 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/78 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/78 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/79 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/79 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/79 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/80 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/81 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/82 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/82 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/82 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/83 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/83 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/83 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/84 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/85 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/85 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/85 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/86 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/86 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/86 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/87 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/87 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/87 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/88 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/88 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/88 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/89 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/90 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/91 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/91 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/91 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/92 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/92 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/92 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/93 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/93 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/93 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/94 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/94 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/94 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/95 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/95 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/95 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/96 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/96 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/96 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/97 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/97 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/97 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/98 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/98 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/98 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/99 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/100 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/101 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/102 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/103 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/104 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/105 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/105 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/105 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/106 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/106 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/106 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/107 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/107 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/107 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/108 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/109 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/109 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/109 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/110 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/110 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/110 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/111 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/111 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/111 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/112 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/112 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/112 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/113 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/113 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/114 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/114 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/114 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/115 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/115 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/115 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/116 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/116 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/116 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/117 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/117 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/117 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/118 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/118 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/118 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/119 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/119 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/119 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/120 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/120 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/120 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/121 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/121 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/121 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/122 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/122 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/122 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/123 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/123 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/123 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/124 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/124 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/124 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/125 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/125 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/126 @@ -56596,19 +56628,19 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/127 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/127 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/128 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/128 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/128 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/129 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/130 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/130 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/130 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/131 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/131 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/131 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/132 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/132 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/132 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/133 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/133 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/133 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/134 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/134 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/134 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/135 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/135 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/136 @@ -56627,15 +56659,15 @@ 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/143 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (1 ms) -8: [----------] 144 tests from SaneInput/PmeGatherTest (82 ms total) +8: [----------] 144 tests from SaneInput/PmeGatherTest (75 ms total) 8: 8: [----------] 16 tests from SaneInput/PmeSolveTest 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/0 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/1 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (2 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (3 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/2 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/2 (2 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/2 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/3 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (3 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/4 @@ -56653,7 +56685,7 @@ 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/10 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/11 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (3 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/12 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/12 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/13 @@ -56666,7 +56698,7 @@ 8: 8: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 -8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (2 ms) +8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 @@ -56681,13 +56713,13 @@ 8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (1 ms) -8: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (10 ms total) +8: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (9 ms total) 8: 8: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (3 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (3 ms) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (2 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 (2 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 @@ -56699,70 +56731,70 @@ 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (2 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (2 ms) -8: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (18 ms total) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (1 ms) +8: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (16 ms total) 8: 8: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 (2 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (3 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (2 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 (2 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (2 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 (2 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (0 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (2 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (3 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (2 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (2 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (3 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (2 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 (0 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (2 ms) -8: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (28 ms total) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (1 ms) +8: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (26 ms total) 8: 8: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (3 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 (2 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 (1 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (3 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (1 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (1 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (3 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (3 ms) -8: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (27 ms total) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (2 ms) +8: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (25 ms total) 8: 8: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 @@ -56772,13 +56804,13 @@ 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (3 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (3 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 (4 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 (3 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 (2 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 @@ -56789,39 +56821,39 @@ 8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (4 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (4 ms) -8: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (33 ms total) +8: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (31 ms total) 8: 8: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (4 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (5 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (4 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (5 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (6 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (7 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (7 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (8 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (9 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (10 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (10 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (5 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (4 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (4 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (5 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (6 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (7 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (7 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (8 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (8 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (9 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (10 ms) -8: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (90 ms total) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (11 ms) +8: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (97 ms total) 8: 8: [----------] Global test environment tear-down -8: [==========] 257 tests from 10 test cases ran. (447 ms total) +8: [==========] 257 tests from 10 test cases ran. (409 ms total) 8: [ PASSED ] 257 tests. - 8/27 Test #8: EwaldUnitTests ................... Passed 0.53 sec + 8/27 Test #8: EwaldUnitTests ................... Passed 0.49 sec test 9 Start 9: FFTUnitTests @@ -56833,30 +56865,30 @@ 9: [ RUN ] ManyFFTTest.Complex1DLength48Multi5Test 9: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (6 ms) 9: [ RUN ] ManyFFTTest.Real1DLength48Multi5Test -9: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (18 ms) -9: [----------] 2 tests from ManyFFTTest (25 ms total) +9: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (10 ms) +9: [----------] 2 tests from ManyFFTTest (17 ms total) 9: 9: [----------] 1 test from FFTTest 9: [ RUN ] FFTTest.Real2DLength18_15Test -9: [ OK ] FFTTest.Real2DLength18_15Test (4 ms) -9: [----------] 1 test from FFTTest (4 ms total) +9: [ OK ] FFTTest.Real2DLength18_15Test (3 ms) +9: [----------] 1 test from FFTTest (3 ms total) 9: 9: [----------] 1 test from FFFTest3D 9: [ RUN ] FFFTest3D.Real5_6_9 9: [ OK ] FFFTest3D.Real5_6_9 (3 ms) -9: [----------] 1 test from FFFTest3D (3 ms total) +9: [----------] 1 test from FFFTest3D (4 ms total) 9: 9: [----------] 10 tests from 7_8_25_36_60/FFTTest1D 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/0 9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/0 (1 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/1 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/1 (0 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/1 (1 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/2 9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (1 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/3 9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (2 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/4 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (2 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (1 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/0 9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (0 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/1 @@ -56870,9 +56902,9 @@ 9: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (23 ms total) 9: 9: [----------] Global test environment tear-down -9: [==========] 14 tests from 4 test cases ran. (55 ms total) +9: [==========] 14 tests from 4 test cases ran. (47 ms total) 9: [ PASSED ] 14 tests. - 9/27 Test #9: FFTUnitTests ..................... Passed 0.10 sec + 9/27 Test #9: FFTUnitTests ..................... Passed 0.08 sec test 10 Start 10: GpuUtilsUnitTests @@ -56946,7 +56978,7 @@ 10: [ OK ] HostAllocatorTestNoMem/0.Swap (0 ms) 10: [ RUN ] HostAllocatorTestNoMem/0.Comparison 10: [ OK ] HostAllocatorTestNoMem/0.Comparison (0 ms) -10: [----------] 5 tests from HostAllocatorTestNoMem/0 (0 ms total) +10: [----------] 5 tests from HostAllocatorTestNoMem/0 (1 ms total) 10: 10: [----------] 5 tests from HostAllocatorTestNoMem/1, where TypeParam = double 10: [ RUN ] HostAllocatorTestNoMem/1.CreateVector @@ -56972,7 +57004,7 @@ 10: [ OK ] HostAllocatorTestNoMem/2.Swap (0 ms) 10: [ RUN ] HostAllocatorTestNoMem/2.Comparison 10: [ OK ] HostAllocatorTestNoMem/2.Comparison (0 ms) -10: [----------] 5 tests from HostAllocatorTestNoMem/2 (1 ms total) +10: [----------] 5 tests from HostAllocatorTestNoMem/2 (0 ms total) 10: 10: [----------] 5 tests from HostAllocatorTestNoMem/3, where TypeParam = gmx::test::MoveOnly 10: [ RUN ] HostAllocatorTestNoMem/3.CreateVector @@ -57033,18 +57065,18 @@ 10: [ OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/1.Move 10: [ OK ] AllocatorTest/1.Move (0 ms) -10: [----------] 4 tests from AllocatorTest/1 (0 ms total) +10: [----------] 4 tests from AllocatorTest/1 (1 ms total) 10: 10: [----------] 4 tests from AllocatorTest/2, where TypeParam = gmx::Allocator, gmx::HostAllocationPolicy> 10: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment 10: [ OK ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment -10: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (1 ms) +10: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment 10: [ OK ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/2.Move 10: [ OK ] AllocatorTest/2.Move (0 ms) -10: [----------] 4 tests from AllocatorTest/2 (1 ms total) +10: [----------] 4 tests from AllocatorTest/2 (0 ms total) 10: 10: [----------] 4 tests from AllocatorTest/3, where TypeParam = gmx::Allocator 10: [ RUN ] AllocatorTest/3.AllocatorAlignAllocatesWithAlignment @@ -57058,7 +57090,7 @@ 10: [----------] 4 tests from AllocatorTest/3 (0 ms total) 10: 10: [----------] Global test environment tear-down -10: [==========] 60 tests from 19 test cases ran. (3 ms total) +10: [==========] 60 tests from 19 test cases ran. (2 ms total) 10: [ PASSED ] 60 tests. 10/27 Test #10: GpuUtilsUnitTests ................ Passed 0.04 sec test 11 @@ -57070,19 +57102,19 @@ 11: [----------] Global test environment set-up. 11: [----------] 4 tests from HardwareTopologyTest 11: [ RUN ] HardwareTopologyTest.Execute -11: [ OK ] HardwareTopologyTest.Execute (25 ms) +11: [ OK ] HardwareTopologyTest.Execute (22 ms) 11: [ RUN ] HardwareTopologyTest.HwlocExecute -11: [ OK ] HardwareTopologyTest.HwlocExecute (26 ms) +11: [ OK ] HardwareTopologyTest.HwlocExecute (19 ms) 11: [ RUN ] HardwareTopologyTest.ProcessorSelfconsistency -11: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (24 ms) +11: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (22 ms) 11: [ RUN ] HardwareTopologyTest.NumaCacheSelfconsistency -11: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (23 ms) -11: [----------] 4 tests from HardwareTopologyTest (99 ms total) +11: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (19 ms) +11: [----------] 4 tests from HardwareTopologyTest (83 ms total) 11: 11: [----------] Global test environment tear-down -11: [==========] 4 tests from 1 test case ran. (99 ms total) +11: [==========] 4 tests from 1 test case ran. (83 ms total) 11: [ PASSED ] 4 tests. -11/27 Test #11: HardwareUnitTests ................ Passed 0.13 sec +11/27 Test #11: HardwareUnitTests ................ Passed 0.11 sec test 12 Start 12: MathUnitTests @@ -57138,9 +57170,9 @@ 12: 12: [----------] 21 tests from FunctionTest 12: [ RUN ] FunctionTest.StaticLog2 -12: [ OK ] FunctionTest.StaticLog2 (0 ms) +12: [ OK ] FunctionTest.StaticLog2 (1 ms) 12: [ RUN ] FunctionTest.Log2I32Bit -12: [ OK ] FunctionTest.Log2I32Bit (1 ms) +12: [ OK ] FunctionTest.Log2I32Bit (0 ms) 12: [ RUN ] FunctionTest.Log2I64Bit 12: [ OK ] FunctionTest.Log2I64Bit (0 ms) 12: [ RUN ] FunctionTest.GreatestCommonDivisor @@ -57148,19 +57180,19 @@ 12: [ RUN ] FunctionTest.InvsqrtFloat 12: [ OK ] FunctionTest.InvsqrtFloat (0 ms) 12: [ RUN ] FunctionTest.InvsqrtDouble -12: [ OK ] FunctionTest.InvsqrtDouble (0 ms) +12: [ OK ] FunctionTest.InvsqrtDouble (1 ms) 12: [ RUN ] FunctionTest.InvsqrtInteger 12: [ OK ] FunctionTest.InvsqrtInteger (0 ms) 12: [ RUN ] FunctionTest.InvcbrtFloat 12: [ OK ] FunctionTest.InvcbrtFloat (0 ms) 12: [ RUN ] FunctionTest.InvcbrtDouble -12: [ OK ] FunctionTest.InvcbrtDouble (1 ms) +12: [ OK ] FunctionTest.InvcbrtDouble (0 ms) 12: [ RUN ] FunctionTest.InvcbrtInteger 12: [ OK ] FunctionTest.InvcbrtInteger (0 ms) 12: [ RUN ] FunctionTest.SixthrootFloat 12: [ OK ] FunctionTest.SixthrootFloat (0 ms) 12: [ RUN ] FunctionTest.SixthrootDouble -12: [ OK ] FunctionTest.SixthrootDouble (0 ms) +12: [ OK ] FunctionTest.SixthrootDouble (1 ms) 12: [ RUN ] FunctionTest.SixthrootInteger 12: [ OK ] FunctionTest.SixthrootInteger (0 ms) 12: [ RUN ] FunctionTest.InvsixthrootFloat @@ -57172,13 +57204,13 @@ 12: [ RUN ] FunctionTest.Powers 12: [ OK ] FunctionTest.Powers (0 ms) 12: [ RUN ] FunctionTest.ErfInvFloat -12: [ OK ] FunctionTest.ErfInvFloat (1 ms) +12: [ OK ] FunctionTest.ErfInvFloat (0 ms) 12: [ RUN ] FunctionTest.ErfInvDouble -12: [ OK ] FunctionTest.ErfInvDouble (0 ms) +12: [ OK ] FunctionTest.ErfInvDouble (1 ms) 12: [ RUN ] FunctionTest.ErfAndErfInvAreInversesFloat 12: [ OK ] FunctionTest.ErfAndErfInvAreInversesFloat (0 ms) 12: [ RUN ] FunctionTest.ErfAndErfInvAreInversesDouble -12: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (1 ms) +12: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (0 ms) 12: [----------] 21 tests from FunctionTest (4 ms total) 12: 12: [----------] 2 tests from InvertMatrixTest @@ -57193,18 +57225,18 @@ 12: [ OK ] InvertBoxMatrixTest.IdentityIsImpotent (0 ms) 12: [ RUN ] InvertBoxMatrixTest.ComputesInverseInPlace 12: [ OK ] InvertBoxMatrixTest.ComputesInverseInPlace (0 ms) -12: [----------] 2 tests from InvertBoxMatrixTest (1 ms total) +12: [----------] 2 tests from InvertBoxMatrixTest (0 ms total) 12: 12: [----------] 4 tests from PaddedVectorTest/0, where TypeParam = std::allocator 12: [ RUN ] PaddedVectorTest/0.ConstructsResizesAndReserves -12: [ OK ] PaddedVectorTest/0.ConstructsResizesAndReserves (0 ms) +12: [ OK ] PaddedVectorTest/0.ConstructsResizesAndReserves (1 ms) 12: [ RUN ] PaddedVectorTest/0.CanCopyAssign 12: [ OK ] PaddedVectorTest/0.CanCopyAssign (0 ms) 12: [ RUN ] PaddedVectorTest/0.CanMoveAssign 12: [ OK ] PaddedVectorTest/0.CanMoveAssign (0 ms) 12: [ RUN ] PaddedVectorTest/0.CanSwap 12: [ OK ] PaddedVectorTest/0.CanSwap (0 ms) -12: [----------] 4 tests from PaddedVectorTest/0 (0 ms total) +12: [----------] 4 tests from PaddedVectorTest/0 (1 ms total) 12: 12: [----------] 4 tests from PaddedVectorTest/1, where TypeParam = std::allocator 12: [ RUN ] PaddedVectorTest/1.ConstructsResizesAndReserves @@ -57281,7 +57313,7 @@ 12: [ OK ] PaddedVectorTest/7.CanMoveAssign (0 ms) 12: [ RUN ] PaddedVectorTest/7.CanSwap 12: [ OK ] PaddedVectorTest/7.CanSwap (0 ms) -12: [----------] 4 tests from PaddedVectorTest/7 (1 ms total) +12: [----------] 4 tests from PaddedVectorTest/7 (0 ms total) 12: 12: [----------] 4 tests from PaddedVectorTest/8, where TypeParam = gmx::Allocator, gmx::AlignedAllocationPolicy> 12: [ RUN ] PaddedVectorTest/8.ConstructsResizesAndReserves @@ -57329,7 +57361,7 @@ 12: [ RUN ] RVecTest.CanCrossProductRVecByRvec 12: [ OK ] RVecTest.CanCrossProductRVecByRvec (0 ms) 12: [ RUN ] RVecTest.CanDivideRVecInplace -12: [ OK ] RVecTest.CanDivideRVecInplace (0 ms) +12: [ OK ] RVecTest.CanDivideRVecInplace (1 ms) 12: [ RUN ] RVecTest.CanScaleRVec 12: [ OK ] RVecTest.CanScaleRVec (0 ms) 12: [ RUN ] RVecTest.CanDivideRVec @@ -57372,12 +57404,12 @@ 12: [ OK ] RVecTest.MoveConstructorWorks (0 ms) 12: [ RUN ] RVecTest.MoveAssignmentWorks 12: [ OK ] RVecTest.MoveAssignmentWorks (0 ms) -12: [----------] 33 tests from RVecTest (0 ms total) +12: [----------] 33 tests from RVecTest (1 ms total) 12: 12: [----------] Global test environment tear-down -12: [==========] 112 tests from 20 test cases ran. (6 ms total) +12: [==========] 112 tests from 20 test cases ran. (7 ms total) 12: [ PASSED ] 112 tests. -12/27 Test #12: MathUnitTests .................... Passed 0.05 sec +12/27 Test #12: MathUnitTests .................... Passed 0.04 sec test 13 Start 13: MdrunUtilityUnitTests @@ -57391,13 +57423,13 @@ 13: [ RUN ] ThreadAffinityTest.DoesNothingWhenNotSupported 13: [ OK ] ThreadAffinityTest.DoesNothingWhenNotSupported (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads -13: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads (1 ms) +13: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads -13: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads (0 ms) +13: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads (1 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads 13: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithUnknownHardware -13: [ OK ] ThreadAffinityTest.DoesNothingWithUnknownHardware (1 ms) +13: [ OK ] ThreadAffinityTest.DoesNothingWithUnknownHardware (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithTooManyThreads 13: [ OK ] ThreadAffinityTest.DoesNothingWithTooManyThreads (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeOffset @@ -57405,16 +57437,16 @@ 13: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeStride 13: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeStride (0 ms) 13: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithAuto -13: [ OK ] ThreadAffinityTest.PinsSingleThreadWithAuto (1 ms) +13: [ OK ] ThreadAffinityTest.PinsSingleThreadWithAuto (0 ms) 13: [ RUN ] ThreadAffinityTest.PinsSingleThreadWhenForced 13: [ OK ] ThreadAffinityTest.PinsSingleThreadWhenForced (0 ms) 13: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced -13: [ OK ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced (0 ms) +13: [ OK ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced (1 ms) 13: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread 13: NOTE: Affinity setting failed. -13: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread (1 ms) +13: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread (0 ms) 13: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithAuto -13: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (5 ms) +13: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (1 ms) 13: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced 13: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (0 ms) 13: [ RUN ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads @@ -57422,12 +57454,12 @@ 13: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing 13: NOTE: Affinity setting for 1/2 threads failed. 13: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (0 ms) -13: [----------] 17 tests from ThreadAffinityTest (10 ms total) +13: [----------] 17 tests from ThreadAffinityTest (5 ms total) 13: 13: [----------] Global test environment tear-down -13: [==========] 17 tests from 1 test case ran. (10 ms total) +13: [==========] 17 tests from 1 test case ran. (5 ms total) 13: [ PASSED ] 17 tests. -13/27 Test #13: MdrunUtilityUnitTests ............ Passed 0.05 sec +13/27 Test #13: MdrunUtilityUnitTests ............ Passed 0.03 sec test 14 Start 14: MdrunUtilityMpiUnitTests @@ -57437,40 +57469,40 @@ 14: [----------] Global test environment set-up. 14: [----------] 6 tests from ThreadAffinityMultiRankTest 14: [ RUN ] ThreadAffinityMultiRankTest.PinsWholeNode -14: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (1 ms) +14: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (11 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride -14: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (0 ms) +14: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (1 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.PinsTwoNodes 14: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (0 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled 14: [ OK ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled (0 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto -14: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (0 ms) +14: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (1 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce 14: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (1 ms) -14: [----------] 6 tests from ThreadAffinityMultiRankTest (3 ms total) +14: [----------] 6 tests from ThreadAffinityMultiRankTest (17 ms total) 14: 14: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly 14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (0 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (1 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (0 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (0 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (1 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly 14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (1 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly 14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (0 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (1 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (0 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly 14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (1 ms) -14: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (4 ms total) +14: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (9 ms total) 14: 14: [----------] Global test environment tear-down -14: [==========] 13 tests from 2 test cases ran. (7 ms total) +14: [==========] 13 tests from 2 test cases ran. (36 ms total) 14: [ PASSED ] 13 tests. -14/27 Test #14: MdrunUtilityMpiUnitTests ......... Passed 0.07 sec +14/27 Test #14: MdrunUtilityMpiUnitTests ......... Passed 0.21 sec test 15 Start 15: OnlineHelpUnitTests @@ -57480,7 +57512,7 @@ 15: [----------] Global test environment set-up. 15: [----------] 6 tests from TextTableFormatterTest 15: [ RUN ] TextTableFormatterTest.HandlesBasicCase -15: [ OK ] TextTableFormatterTest.HandlesBasicCase (0 ms) +15: [ OK ] TextTableFormatterTest.HandlesBasicCase (1 ms) 15: [ RUN ] TextTableFormatterTest.HandlesEmptyColumnTitles 15: [ OK ] TextTableFormatterTest.HandlesEmptyColumnTitles (0 ms) 15: [ RUN ] TextTableFormatterTest.HandlesIndentation @@ -57488,19 +57520,19 @@ 15: [ RUN ] TextTableFormatterTest.HandlesOverflowingLines 15: [ OK ] TextTableFormatterTest.HandlesOverflowingLines (0 ms) 15: [ RUN ] TextTableFormatterTest.HandlesLastColumnFolding -15: [ OK ] TextTableFormatterTest.HandlesLastColumnFolding (1 ms) +15: [ OK ] TextTableFormatterTest.HandlesLastColumnFolding (0 ms) 15: [ RUN ] TextTableFormatterTest.HandlesEmptyColumns 15: [ OK ] TextTableFormatterTest.HandlesEmptyColumns (0 ms) 15: [----------] 6 tests from TextTableFormatterTest (1 ms total) 15: 15: [----------] 3 tests from HelpManagerTest 15: [ RUN ] HelpManagerTest.HandlesRootTopic -15: [ OK ] HelpManagerTest.HandlesRootTopic (0 ms) +15: [ OK ] HelpManagerTest.HandlesRootTopic (1 ms) 15: [ RUN ] HelpManagerTest.HandlesSubTopics 15: [ OK ] HelpManagerTest.HandlesSubTopics (0 ms) 15: [ RUN ] HelpManagerTest.HandlesInvalidTopics 15: [ OK ] HelpManagerTest.HandlesInvalidTopics (0 ms) -15: [----------] 3 tests from HelpManagerTest (0 ms total) +15: [----------] 3 tests from HelpManagerTest (1 ms total) 15: 15: [----------] 2 tests from HelpTopicFormattingTest 15: [ RUN ] HelpTopicFormattingTest.FormatsSimpleTopic @@ -57517,9 +57549,9 @@ 15: [ RUN ] HelpWriterContextTest.CleansUpExtraWhitespace 15: [ OK ] HelpWriterContextTest.CleansUpExtraWhitespace (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsLiteralText -15: [ OK ] HelpWriterContextTest.FormatsLiteralText (1 ms) +15: [ OK ] HelpWriterContextTest.FormatsLiteralText (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsLiteralTextAtBeginning -15: [ OK ] HelpWriterContextTest.FormatsLiteralTextAtBeginning (0 ms) +15: [ OK ] HelpWriterContextTest.FormatsLiteralTextAtBeginning (1 ms) 15: [ RUN ] HelpWriterContextTest.FormatsLiteralTextWithIndentation 15: [ OK ] HelpWriterContextTest.FormatsLiteralTextWithIndentation (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsBulletList @@ -57529,15 +57561,15 @@ 15: [ RUN ] HelpWriterContextTest.FormatsSimpleTable 15: [ OK ] HelpWriterContextTest.FormatsSimpleTable (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsGridTable -15: [ OK ] HelpWriterContextTest.FormatsGridTable (1 ms) +15: [ OK ] HelpWriterContextTest.FormatsGridTable (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsTitles -15: [ OK ] HelpWriterContextTest.FormatsTitles (0 ms) +15: [ OK ] HelpWriterContextTest.FormatsTitles (1 ms) 15: [----------] 11 tests from HelpWriterContextTest (2 ms total) 15: 15: [----------] Global test environment tear-down -15: [==========] 22 tests from 4 test cases ran. (4 ms total) +15: [==========] 22 tests from 4 test cases ran. (5 ms total) 15: [ PASSED ] 22 tests. -15/27 Test #15: OnlineHelpUnitTests .............. Passed 0.05 sec +15/27 Test #15: OnlineHelpUnitTests .............. Passed 0.04 sec test 16 Start 16: OptionsUnitTests @@ -57583,7 +57615,7 @@ 16: [ RUN ] FileNameOptionManagerTest.AddsMissingCustomDefaultExtension 16: [ OK ] FileNameOptionManagerTest.AddsMissingCustomDefaultExtension (0 ms) 16: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile -16: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile (1 ms) +16: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile (0 ms) 16: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile 16: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile (0 ms) 16: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingDefaultInputFile @@ -57625,7 +57657,7 @@ 16: [ RUN ] OptionsAssignerTest.HandlesMultipleParameter 16: [ OK ] OptionsAssignerTest.HandlesMultipleParameter (0 ms) 16: [ RUN ] OptionsAssignerTest.HandlesMissingValue -16: [ OK ] OptionsAssignerTest.HandlesMissingValue (1 ms) +16: [ OK ] OptionsAssignerTest.HandlesMissingValue (0 ms) 16: [ RUN ] OptionsAssignerTest.HandlesExtraValue 16: [ OK ] OptionsAssignerTest.HandlesExtraValue (0 ms) 16: [ RUN ] OptionsAssignerTest.HandlesGroups @@ -57634,7 +57666,7 @@ 16: [ OK ] OptionsAssignerTest.HandlesSections (0 ms) 16: [ RUN ] OptionsAssignerTest.HandlesMultipleSources 16: [ OK ] OptionsAssignerTest.HandlesMultipleSources (0 ms) -16: [----------] 9 tests from OptionsAssignerTest (1 ms total) +16: [----------] 9 tests from OptionsAssignerTest (0 ms total) 16: 16: [----------] 4 tests from OptionsAssignerBooleanTest 16: [ RUN ] OptionsAssignerBooleanTest.StoresYesValue @@ -57673,8 +57705,8 @@ 16: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue 16: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue (0 ms) 16: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment -16: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment (0 ms) -16: [----------] 13 tests from OptionsAssignerIntegerTest (0 ms total) +16: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment (1 ms) +16: [----------] 13 tests from OptionsAssignerIntegerTest (2 ms total) 16: 16: [----------] 5 tests from OptionsAssignerDoubleTest 16: [ RUN ] OptionsAssignerDoubleTest.StoresSingleValue @@ -57687,7 +57719,7 @@ 16: [ OK ] OptionsAssignerDoubleTest.HandlesPreSetScaleValue (0 ms) 16: [ RUN ] OptionsAssignerDoubleTest.HandlesPostSetScaleValue 16: [ OK ] OptionsAssignerDoubleTest.HandlesPostSetScaleValue (0 ms) -16: [----------] 5 tests from OptionsAssignerDoubleTest (1 ms total) +16: [----------] 5 tests from OptionsAssignerDoubleTest (0 ms total) 16: 16: [----------] 9 tests from OptionsAssignerStringTest 16: [ RUN ] OptionsAssignerStringTest.StoresSingleValue @@ -57720,10 +57752,10 @@ 16: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValue 16: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValue (0 ms) 16: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVariable -16: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVariable (9 ms) +16: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVariable (0 ms) 16: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVector 16: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVector (0 ms) -16: [----------] 6 tests from OptionsAssignerEnumTest (9 ms total) +16: [----------] 6 tests from OptionsAssignerEnumTest (0 ms total) 16: 16: [----------] 8 tests from RepeatingOptionSectionTest 16: [ RUN ] RepeatingOptionSectionTest.HandlesNoInstance @@ -57733,7 +57765,7 @@ 16: [ RUN ] RepeatingOptionSectionTest.HandlesSingleInstance 16: [ OK ] RepeatingOptionSectionTest.HandlesSingleInstance (0 ms) 16: [ RUN ] RepeatingOptionSectionTest.HandlesDefaultValue -16: [ OK ] RepeatingOptionSectionTest.HandlesDefaultValue (1 ms) +16: [ OK ] RepeatingOptionSectionTest.HandlesDefaultValue (0 ms) 16: [ RUN ] RepeatingOptionSectionTest.HandlesTwoInstances 16: [ OK ] RepeatingOptionSectionTest.HandlesTwoInstances (0 ms) 16: [ RUN ] RepeatingOptionSectionTest.HandlesUnsetOptionWithImplicitDefault @@ -57742,7 +57774,7 @@ 16: [ OK ] RepeatingOptionSectionTest.HandlesUnsetOptionWithExplicitDefault (0 ms) 16: [ RUN ] RepeatingOptionSectionTest.HandlesNestedSections 16: [ OK ] RepeatingOptionSectionTest.HandlesNestedSections (0 ms) -16: [----------] 8 tests from RepeatingOptionSectionTest (1 ms total) +16: [----------] 8 tests from RepeatingOptionSectionTest (0 ms total) 16: 16: [----------] 1 test from TimeUnitManagerTest 16: [ RUN ] TimeUnitManagerTest.BasicOperations @@ -57776,13 +57808,13 @@ 16: [ RUN ] TreeValueSupportCheckTest.HandlesEmpty 16: [ OK ] TreeValueSupportCheckTest.HandlesEmpty (0 ms) 16: [ RUN ] TreeValueSupportCheckTest.HandlesMatchingTree -16: [ OK ] TreeValueSupportCheckTest.HandlesMatchingTree (0 ms) +16: [ OK ] TreeValueSupportCheckTest.HandlesMatchingTree (1 ms) 16: [ RUN ] TreeValueSupportCheckTest.HandlesSmallerTree1 16: [ OK ] TreeValueSupportCheckTest.HandlesSmallerTree1 (0 ms) 16: [ RUN ] TreeValueSupportCheckTest.HandlesSmallerTree2 16: [ OK ] TreeValueSupportCheckTest.HandlesSmallerTree2 (0 ms) 16: [ RUN ] TreeValueSupportCheckTest.DetectsExtraValue -16: [ OK ] TreeValueSupportCheckTest.DetectsExtraValue (1 ms) +16: [ OK ] TreeValueSupportCheckTest.DetectsExtraValue (0 ms) 16: [----------] 5 tests from TreeValueSupportCheckTest (1 ms total) 16: 16: [----------] 6 tests from TreeValueSupportAdjustTest @@ -57795,9 +57827,9 @@ 16: [ RUN ] TreeValueSupportAdjustTest.NormalizesValues 16: [ OK ] TreeValueSupportAdjustTest.NormalizesValues (0 ms) 16: [ RUN ] TreeValueSupportAdjustTest.MergesDefaultValues -16: [ OK ] TreeValueSupportAdjustTest.MergesDefaultValues (0 ms) +16: [ OK ] TreeValueSupportAdjustTest.MergesDefaultValues (1 ms) 16: [ RUN ] TreeValueSupportAdjustTest.OrdersValues -16: [ OK ] TreeValueSupportAdjustTest.OrdersValues (1 ms) +16: [ OK ] TreeValueSupportAdjustTest.OrdersValues (0 ms) 16: [----------] 6 tests from TreeValueSupportAdjustTest (1 ms total) 16: 16: [----------] 8 tests from TreeValueSupportTest @@ -57806,9 +57838,9 @@ 16: [ RUN ] TreeValueSupportTest.SupportsIntegerOption 16: [ OK ] TreeValueSupportTest.SupportsIntegerOption (0 ms) 16: [ RUN ] TreeValueSupportTest.SupportsInt64Option -16: [ OK ] TreeValueSupportTest.SupportsInt64Option (1 ms) +16: [ OK ] TreeValueSupportTest.SupportsInt64Option (0 ms) 16: [ RUN ] TreeValueSupportTest.SupportsStringOption -16: [ OK ] TreeValueSupportTest.SupportsStringOption (0 ms) +16: [ OK ] TreeValueSupportTest.SupportsStringOption (1 ms) 16: [ RUN ] TreeValueSupportTest.SupportsFloatOption 16: [ OK ] TreeValueSupportTest.SupportsFloatOption (0 ms) 16: [ RUN ] TreeValueSupportTest.SupportsDoubleOption @@ -57817,12 +57849,12 @@ 16: [ OK ] TreeValueSupportTest.SupportsEnumIntOption (0 ms) 16: [ RUN ] TreeValueSupportTest.SupportsEnumOption 16: [ OK ] TreeValueSupportTest.SupportsEnumOption (0 ms) -16: [----------] 8 tests from TreeValueSupportTest (2 ms total) +16: [----------] 8 tests from TreeValueSupportTest (1 ms total) 16: 16: [----------] Global test environment tear-down -16: [==========] 110 tests from 18 test cases ran. (19 ms total) +16: [==========] 110 tests from 18 test cases ran. (10 ms total) 16: [ PASSED ] 110 tests. -16/27 Test #16: OptionsUnitTests ................. Passed 0.06 sec +16/27 Test #16: OptionsUnitTests ................. Passed 0.04 sec test 17 Start 17: RandomUnitTests @@ -57843,14 +57875,14 @@ 17: 17: [----------] 4 tests from GammaDistributionTest 17: [ RUN ] GammaDistributionTest.Output -17: [ OK ] GammaDistributionTest.Output (1 ms) +17: [ OK ] GammaDistributionTest.Output (0 ms) 17: [ RUN ] GammaDistributionTest.Logical 17: [ OK ] GammaDistributionTest.Logical (0 ms) 17: [ RUN ] GammaDistributionTest.Reset 17: [ OK ] GammaDistributionTest.Reset (0 ms) 17: [ RUN ] GammaDistributionTest.AltParam 17: [ OK ] GammaDistributionTest.AltParam (0 ms) -17: [----------] 4 tests from GammaDistributionTest (1 ms total) +17: [----------] 4 tests from GammaDistributionTest (0 ms total) 17: 17: [----------] 4 tests from NormalDistributionTest 17: [ RUN ] NormalDistributionTest.Output @@ -57861,7 +57893,7 @@ 17: [ OK ] NormalDistributionTest.Reset (0 ms) 17: [ RUN ] NormalDistributionTest.AltParam 17: [ OK ] NormalDistributionTest.AltParam (0 ms) -17: [----------] 4 tests from NormalDistributionTest (0 ms total) +17: [----------] 4 tests from NormalDistributionTest (1 ms total) 17: 17: [----------] 1 test from SeedTest 17: [ RUN ] SeedTest.makeRandomSeed @@ -57872,7 +57904,7 @@ 17: [ RUN ] TabulatedNormalDistributionTest.Output14 17: [ OK ] TabulatedNormalDistributionTest.Output14 (0 ms) 17: [ RUN ] TabulatedNormalDistributionTest.Output16 -17: [ OK ] TabulatedNormalDistributionTest.Output16 (1 ms) +17: [ OK ] TabulatedNormalDistributionTest.Output16 (0 ms) 17: [ RUN ] TabulatedNormalDistributionTest.OutputDouble14 17: [ OK ] TabulatedNormalDistributionTest.OutputDouble14 (0 ms) 17: [ RUN ] TabulatedNormalDistributionTest.Logical @@ -57881,12 +57913,12 @@ 17: [ OK ] TabulatedNormalDistributionTest.Reset (0 ms) 17: [ RUN ] TabulatedNormalDistributionTest.AltParam 17: [ OK ] TabulatedNormalDistributionTest.AltParam (0 ms) -17: [----------] 6 tests from TabulatedNormalDistributionTest (1 ms total) +17: [----------] 6 tests from TabulatedNormalDistributionTest (0 ms total) 17: 17: [----------] 1 test from TabulatedNormalDistributionTableTest 17: [ RUN ] TabulatedNormalDistributionTableTest.HasValidProperties -17: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (11 ms) -17: [----------] 1 test from TabulatedNormalDistributionTableTest (11 ms total) +17: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (3 ms) +17: [----------] 1 test from TabulatedNormalDistributionTableTest (3 ms total) 17: 17: [----------] 6 tests from ThreeFry2x64Test 17: [ RUN ] ThreeFry2x64Test.Logical @@ -57898,10 +57930,10 @@ 17: [ RUN ] ThreeFry2x64Test.Discard 17: [ OK ] ThreeFry2x64Test.Discard (0 ms) 17: [ RUN ] ThreeFry2x64Test.InvalidCounter -17: [ OK ] ThreeFry2x64Test.InvalidCounter (1 ms) +17: [ OK ] ThreeFry2x64Test.InvalidCounter (0 ms) 17: [ RUN ] ThreeFry2x64Test.ExhaustInternalCounter 17: [ OK ] ThreeFry2x64Test.ExhaustInternalCounter (0 ms) -17: [----------] 6 tests from ThreeFry2x64Test (1 ms total) +17: [----------] 6 tests from ThreeFry2x64Test (0 ms total) 17: 17: [----------] 4 tests from UniformIntDistributionTest 17: [ RUN ] UniformIntDistributionTest.Output @@ -57912,7 +57944,7 @@ 17: [ OK ] UniformIntDistributionTest.Reset (0 ms) 17: [ RUN ] UniformIntDistributionTest.AltParam 17: [ OK ] UniformIntDistributionTest.AltParam (0 ms) -17: [----------] 4 tests from UniformIntDistributionTest (0 ms total) +17: [----------] 4 tests from UniformIntDistributionTest (1 ms total) 17: 17: [----------] 5 tests from UniformRealDistributionTest 17: [ RUN ] UniformRealDistributionTest.GenerateCanonical @@ -57929,13 +57961,13 @@ 17: 17: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/0 -17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/0 (1 ms) +17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/0 (0 ms) 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/1 17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/1 (0 ms) 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/2 17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/2 (0 ms) 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 -17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 (0 ms) +17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 (1 ms) 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 (0 ms) 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 @@ -57946,12 +57978,12 @@ 17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 (0 ms) 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 (0 ms) -17: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (2 ms total) +17: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (1 ms total) 17: 17: [----------] Global test environment tear-down -17: [==========] 44 tests from 10 test cases ran. (16 ms total) +17: [==========] 44 tests from 10 test cases ran. (7 ms total) 17: [ PASSED ] 44 tests. -17/27 Test #17: RandomUnitTests .................. Passed 0.07 sec +17/27 Test #17: RandomUnitTests .................. Passed 0.05 sec test 18 Start 18: RestraintTests @@ -57965,7 +57997,7 @@ 18: [----------] 1 test from RestraintManager (0 ms total) 18: 18: [----------] Global test environment tear-down -18: [==========] 1 test from 1 test case ran. (1 ms total) +18: [==========] 1 test from 1 test case ran. (0 ms total) 18: [ PASSED ] 1 test. 18/27 Test #18: RestraintTests ................... Passed 0.03 sec test 19 @@ -57979,34 +58011,34 @@ 19: [ RUN ] SplineTableTest/0.HandlesIncorrectInput 19: [ OK ] SplineTableTest/0.HandlesIncorrectInput (3 ms) 19: [ RUN ] SplineTableTest/0.Sinc -19: [ OK ] SplineTableTest/0.Sinc (2 ms) +19: [ OK ] SplineTableTest/0.Sinc (1 ms) 19: [ RUN ] SplineTableTest/0.LJ12 -19: [ OK ] SplineTableTest/0.LJ12 (41 ms) +19: [ OK ] SplineTableTest/0.LJ12 (36 ms) 19: [ RUN ] SplineTableTest/0.PmeCorrection -19: [ OK ] SplineTableTest/0.PmeCorrection (2 ms) +19: [ OK ] SplineTableTest/0.PmeCorrection (3 ms) 19: [ RUN ] SplineTableTest/0.HandlesIncorrectNumericalInput -19: [ OK ] SplineTableTest/0.HandlesIncorrectNumericalInput (1 ms) +19: [ OK ] SplineTableTest/0.HandlesIncorrectNumericalInput (0 ms) 19: [ RUN ] SplineTableTest/0.NumericalInputPmeCorr 19: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (2 ms) 19: [ RUN ] SplineTableTest/0.TwoFunctions -19: [ OK ] SplineTableTest/0.TwoFunctions (68 ms) +19: [ OK ] SplineTableTest/0.TwoFunctions (70 ms) 19: [ RUN ] SplineTableTest/0.ThreeFunctions 19: [ OK ] SplineTableTest/0.ThreeFunctions (74 ms) 19: [ RUN ] SplineTableTest/0.Simd 19: [ OK ] SplineTableTest/0.Simd (17 ms) 19: [ RUN ] SplineTableTest/0.SimdTwoFunctions 19: [ OK ] SplineTableTest/0.SimdTwoFunctions (67 ms) -19: [----------] 10 tests from SplineTableTest/0 (277 ms total) +19: [----------] 10 tests from SplineTableTest/0 (274 ms total) 19: 19: [----------] 10 tests from SplineTableTest/1, where TypeParam = gmx::CubicSplineTable 19: [ RUN ] SplineTableTest/1.HandlesIncorrectInput -19: [ OK ] SplineTableTest/1.HandlesIncorrectInput (4 ms) +19: [ OK ] SplineTableTest/1.HandlesIncorrectInput (3 ms) 19: [ RUN ] SplineTableTest/1.Sinc -19: [ OK ] SplineTableTest/1.Sinc (3 ms) +19: [ OK ] SplineTableTest/1.Sinc (2 ms) 19: [ RUN ] SplineTableTest/1.LJ12 -19: [ OK ] SplineTableTest/1.LJ12 (90 ms) +19: [ OK ] SplineTableTest/1.LJ12 (88 ms) 19: [ RUN ] SplineTableTest/1.PmeCorrection -19: [ OK ] SplineTableTest/1.PmeCorrection (3 ms) +19: [ OK ] SplineTableTest/1.PmeCorrection (2 ms) 19: [ RUN ] SplineTableTest/1.HandlesIncorrectNumericalInput 19: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (1 ms) 19: [ RUN ] SplineTableTest/1.NumericalInputPmeCorr @@ -58014,15 +58046,15 @@ 19: [ RUN ] SplineTableTest/1.TwoFunctions 19: [ OK ] SplineTableTest/1.TwoFunctions (175 ms) 19: [ RUN ] SplineTableTest/1.ThreeFunctions -19: [ OK ] SplineTableTest/1.ThreeFunctions (182 ms) +19: [ OK ] SplineTableTest/1.ThreeFunctions (183 ms) 19: [ RUN ] SplineTableTest/1.Simd 19: [ OK ] SplineTableTest/1.Simd (41 ms) 19: [ RUN ] SplineTableTest/1.SimdTwoFunctions 19: [ OK ] SplineTableTest/1.SimdTwoFunctions (165 ms) -19: [----------] 10 tests from SplineTableTest/1 (666 ms total) +19: [----------] 10 tests from SplineTableTest/1 (663 ms total) 19: 19: [----------] Global test environment tear-down -19: [==========] 20 tests from 2 test cases ran. (943 ms total) +19: [==========] 20 tests from 2 test cases ran. (938 ms total) 19: [ PASSED ] 20 tests. 19/27 Test #19: TableUnitTests ................... Passed 0.98 sec test 20 @@ -58038,8 +58070,8 @@ 20: [ RUN ] GpuIdStringHandlingTest.EmptyStringCanBeValid 20: [ OK ] GpuIdStringHandlingTest.EmptyStringCanBeValid (0 ms) 20: [ RUN ] GpuIdStringHandlingTest.InvalidInputsThrow -20: [ OK ] GpuIdStringHandlingTest.InvalidInputsThrow (1 ms) -20: [----------] 3 tests from GpuIdStringHandlingTest (1 ms total) +20: [ OK ] GpuIdStringHandlingTest.InvalidInputsThrow (0 ms) +20: [----------] 3 tests from GpuIdStringHandlingTest (0 ms total) 20: 20: [----------] Global test environment tear-down 20: [==========] 3 tests from 1 test case ran. (1 ms total) @@ -58063,7 +58095,7 @@ 21: [ OK ] AllocatorTest/0.Move (0 ms) 21: [ RUN ] AllocatorTest/0.StatelessAllocatorUsesNoMemory 21: [ OK ] AllocatorTest/0.StatelessAllocatorUsesNoMemory (0 ms) -21: [----------] 5 tests from AllocatorTest/0 (1 ms total) +21: [----------] 5 tests from AllocatorTest/0 (0 ms total) 21: 21: [----------] 5 tests from AllocatorTest/1, where TypeParam = gmx::Allocator 21: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment @@ -58071,12 +58103,12 @@ 21: [ RUN ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment 21: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment -21: [ OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (0 ms) +21: [ OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (1 ms) 21: [ RUN ] AllocatorTest/1.Move 21: [ OK ] AllocatorTest/1.Move (0 ms) 21: [ RUN ] AllocatorTest/1.StatelessAllocatorUsesNoMemory 21: [ OK ] AllocatorTest/1.StatelessAllocatorUsesNoMemory (0 ms) -21: [----------] 5 tests from AllocatorTest/1 (0 ms total) +21: [----------] 5 tests from AllocatorTest/1 (1 ms total) 21: 21: [----------] 5 tests from AllocatorTest/2, where TypeParam = gmx::Allocator 21: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment @@ -58108,32 +58140,32 @@ 21: [ RUN ] AllocatorTest/4.AllocatorAlignAllocatesWithAlignment 21: [ OK ] AllocatorTest/4.AllocatorAlignAllocatesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment -21: [ OK ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment (1 ms) +21: [ OK ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/4.VectorAllocatesAndReservesWithAlignment 21: [ OK ] AllocatorTest/4.VectorAllocatesAndReservesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/4.Move 21: [ OK ] AllocatorTest/4.Move (0 ms) 21: [ RUN ] AllocatorTest/4.StatelessAllocatorUsesNoMemory 21: [ OK ] AllocatorTest/4.StatelessAllocatorUsesNoMemory (0 ms) -21: [----------] 5 tests from AllocatorTest/4 (1 ms total) +21: [----------] 5 tests from AllocatorTest/4 (0 ms total) 21: 21: [----------] 5 tests from AllocatorTest/5, where TypeParam = gmx::Allocator, gmx::PageAlignedAllocationPolicy> 21: [ RUN ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment 21: [ OK ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment -21: [ OK ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment (0 ms) +21: [ OK ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment (1 ms) 21: [ RUN ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment 21: [ OK ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/5.Move 21: [ OK ] AllocatorTest/5.Move (0 ms) 21: [ RUN ] AllocatorTest/5.StatelessAllocatorUsesNoMemory 21: [ OK ] AllocatorTest/5.StatelessAllocatorUsesNoMemory (0 ms) -21: [----------] 5 tests from AllocatorTest/5 (0 ms total) +21: [----------] 5 tests from AllocatorTest/5 (1 ms total) 21: 21: [----------] 1 test from AllocatorUntypedTest 21: [ RUN ] AllocatorUntypedTest.Comparison 21: [ OK ] AllocatorUntypedTest.Comparison (0 ms) -21: [----------] 1 test from AllocatorUntypedTest (0 ms total) +21: [----------] 1 test from AllocatorUntypedTest (2 ms total) 21: 21: [----------] 1 test from EmptyArrayRefTest 21: [ RUN ] EmptyArrayRefTest.IsEmpty @@ -58142,8 +58174,8 @@ 21: 21: [----------] 1 test from EmptyConstArrayRefTest 21: [ RUN ] EmptyConstArrayRefTest.IsEmpty -21: [ OK ] EmptyConstArrayRefTest.IsEmpty (1 ms) -21: [----------] 1 test from EmptyConstArrayRefTest (6 ms total) +21: [ OK ] EmptyConstArrayRefTest.IsEmpty (0 ms) +21: [----------] 1 test from EmptyConstArrayRefTest (0 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/0, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/0.MakeWithAssignmentWorks @@ -58195,7 +58227,7 @@ 21: [ RUN ] ArrayRefTest/2.ConstructWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/2.ConstructWithTemplateConstructorWorks (0 ms) 21: [ RUN ] ArrayRefTest/2.ConstructWithNonConstTemplateConstructorWorks -21: [ OK ] ArrayRefTest/2.ConstructWithNonConstTemplateConstructorWorks (0 ms) +21: [ OK ] ArrayRefTest/2.ConstructWithNonConstTemplateConstructorWorks (1 ms) 21: [ RUN ] ArrayRefTest/2.ConstructFromPointersWorks 21: [ OK ] ArrayRefTest/2.ConstructFromPointersWorks (0 ms) 21: [ RUN ] ArrayRefTest/2.ConstructFromNonConstPointersWorks @@ -58206,7 +58238,7 @@ 21: [ OK ] ArrayRefTest/2.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/2.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/2.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/2 (0 ms total) +21: [----------] 9 tests from ArrayRefTest/2 (1 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/3, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/3.MakeWithAssignmentWorks @@ -58248,7 +58280,7 @@ 21: [ OK ] ArrayRefTest/4.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/4.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/4.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/4 (1 ms total) +21: [----------] 9 tests from ArrayRefTest/4 (0 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/5, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/5.MakeWithAssignmentWorks @@ -58311,7 +58343,7 @@ 21: [ OK ] ArrayRefTest/7.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/7.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/7.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/7 (0 ms total) +21: [----------] 9 tests from ArrayRefTest/7 (1 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/8, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/8.MakeWithAssignmentWorks @@ -58332,7 +58364,7 @@ 21: [ OK ] ArrayRefTest/8.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/8.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/8.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/8 (1 ms total) +21: [----------] 9 tests from ArrayRefTest/8 (0 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/9, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/9.MakeWithAssignmentWorks @@ -58521,11 +58553,11 @@ 21: [ OK ] ArrayRefTest/17.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/17.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/17.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/17 (0 ms total) +21: [----------] 9 tests from ArrayRefTest/17 (1 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/18, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/18.MakeWithAssignmentWorks -21: [ OK ] ArrayRefTest/18.MakeWithAssignmentWorks (1 ms) +21: [ OK ] ArrayRefTest/18.MakeWithAssignmentWorks (0 ms) 21: [ RUN ] ArrayRefTest/18.MakeWithNonConstAssignmentWorks 21: [ OK ] ArrayRefTest/18.MakeWithNonConstAssignmentWorks (0 ms) 21: [ RUN ] ArrayRefTest/18.ConstructWithTemplateConstructorWorks @@ -58542,7 +58574,7 @@ 21: [ OK ] ArrayRefTest/18.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/18.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/18.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/18 (1 ms total) +21: [----------] 9 tests from ArrayRefTest/18 (0 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/19, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/19.MakeWithAssignmentWorks @@ -58593,19 +58625,19 @@ 21: 21: [----------] 1 test from TreeValueTransformErrorTest 21: [ RUN ] TreeValueTransformErrorTest.ConversionError -21: [ OK ] TreeValueTransformErrorTest.ConversionError (4 ms) -21: [----------] 1 test from TreeValueTransformErrorTest (4 ms total) +21: [ OK ] TreeValueTransformErrorTest.ConversionError (1 ms) +21: [----------] 1 test from TreeValueTransformErrorTest (1 ms total) 21: 21: [----------] 2 tests from RegexBasicTest 21: [ RUN ] RegexBasicTest.BasicMatchesWorkWhenSupported 21: [ OK ] RegexBasicTest.BasicMatchesWorkWhenSupported (0 ms) 21: [ RUN ] RegexBasicTest.MatchesForCharacterClassesWorkWhenSupported -21: [ OK ] RegexBasicTest.MatchesForCharacterClassesWorkWhenSupported (1 ms) -21: [----------] 2 tests from RegexBasicTest (1 ms total) +21: [ OK ] RegexBasicTest.MatchesForCharacterClassesWorkWhenSupported (0 ms) +21: [----------] 2 tests from RegexBasicTest (0 ms total) 21: 21: [----------] 5 tests from LoggerTest 21: [ RUN ] LoggerTest.EmptyLoggerWorks -21: [ OK ] LoggerTest.EmptyLoggerWorks (0 ms) +21: [ OK ] LoggerTest.EmptyLoggerWorks (1 ms) 21: [ RUN ] LoggerTest.LogsToStream 21: [ OK ] LoggerTest.LogsToStream (0 ms) 21: [ RUN ] LoggerTest.LogsToFile @@ -58614,7 +58646,7 @@ 21: [ OK ] LoggerTest.LevelFilteringWorks (0 ms) 21: [ RUN ] LoggerTest.LogsToMultipleStreams 21: [ OK ] LoggerTest.LogsToMultipleStreams (0 ms) -21: [----------] 5 tests from LoggerTest (0 ms total) +21: [----------] 5 tests from LoggerTest (1 ms total) 21: 21: [----------] 4 tests from MutexBasicTest 21: [ RUN ] MutexBasicTest.CanBeMade @@ -58625,16 +58657,16 @@ 21: [ OK ] MutexBasicTest.CanBeTryLocked (0 ms) 21: [ RUN ] MutexBasicTest.CanBeUsedInLockGuard 21: [ OK ] MutexBasicTest.CanBeUsedInLockGuard (0 ms) -21: [----------] 4 tests from MutexBasicTest (1 ms total) +21: [----------] 4 tests from MutexBasicTest (0 ms total) 21: 21: [----------] 3 tests from MutexTaskTest 21: [ RUN ] MutexTaskTest.MutualExclusionWorksWithLock -21: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (0 ms) +21: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (1 ms) 21: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread 21: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (1 ms) 21: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread 21: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread (0 ms) -21: [----------] 3 tests from MutexTaskTest (1 ms total) +21: [----------] 3 tests from MutexTaskTest (2 ms total) 21: 21: [----------] 4 tests from PathTest 21: [ RUN ] PathTest.StripSourcePrefixWorks @@ -58664,11 +58696,11 @@ 21: [ RUN ] StringUtilityTest.StripString 21: [ OK ] StringUtilityTest.StripString (0 ms) 21: [ RUN ] StringUtilityTest.SplitString -21: [ OK ] StringUtilityTest.SplitString (0 ms) +21: [ OK ] StringUtilityTest.SplitString (1 ms) 21: [ RUN ] StringUtilityTest.SplitDelimitedString 21: [ OK ] StringUtilityTest.SplitDelimitedString (0 ms) 21: [ RUN ] StringUtilityTest.SplitAndTrimDelimitedString -21: [ OK ] StringUtilityTest.SplitAndTrimDelimitedString (1 ms) +21: [ OK ] StringUtilityTest.SplitAndTrimDelimitedString (0 ms) 21: [----------] 7 tests from StringUtilityTest (1 ms total) 21: 21: [----------] 2 tests from FormatStringTest @@ -58706,7 +58738,7 @@ 21: [ OK ] ReplaceAllTest.HandlesWordBoundaries (0 ms) 21: [ RUN ] ReplaceAllTest.HandlesPossibleRecursiveMatches 21: [ OK ] ReplaceAllTest.HandlesPossibleRecursiveMatches (0 ms) -21: [----------] 6 tests from ReplaceAllTest (0 ms total) +21: [----------] 6 tests from ReplaceAllTest (1 ms total) 21: 21: [----------] 10 tests from TextLineWrapperTest 21: [ RUN ] TextLineWrapperTest.HandlesEmptyStrings @@ -58724,7 +58756,7 @@ 21: [ RUN ] TextLineWrapperTest.HandlesIndentWithEmptyLines 21: [ OK ] TextLineWrapperTest.HandlesIndentWithEmptyLines (0 ms) 21: [ RUN ] TextLineWrapperTest.HandlesHangingIndent -21: [ OK ] TextLineWrapperTest.HandlesHangingIndent (0 ms) +21: [ OK ] TextLineWrapperTest.HandlesHangingIndent (1 ms) 21: [ RUN ] TextLineWrapperTest.HandlesContinuationCharacter 21: [ OK ] TextLineWrapperTest.HandlesContinuationCharacter (0 ms) 21: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace @@ -58737,13 +58769,13 @@ 21: [ RUN ] TextWriterTest.WritesLinesInParts 21: [ OK ] TextWriterTest.WritesLinesInParts (0 ms) 21: [ RUN ] TextWriterTest.WritesWrappedLines -21: [ OK ] TextWriterTest.WritesWrappedLines (1 ms) +21: [ OK ] TextWriterTest.WritesWrappedLines (0 ms) 21: [ RUN ] TextWriterTest.WritesLinesInPartsWithWrapper 21: [ OK ] TextWriterTest.WritesLinesInPartsWithWrapper (0 ms) 21: [ RUN ] TextWriterTest.TracksNewlines 21: [ OK ] TextWriterTest.TracksNewlines (0 ms) 21: [ RUN ] TextWriterTest.PreservesTrailingWhitespace -21: [ OK ] TextWriterTest.PreservesTrailingWhitespace (0 ms) +21: [ OK ] TextWriterTest.PreservesTrailingWhitespace (1 ms) 21: [----------] 6 tests from TextWriterTest (1 ms total) 21: 21: [----------] 1 test from TypeTraitsTest @@ -58764,7 +58796,7 @@ 21: [ OK ] BitmaskTest32_11/BitmaskTest32.Union/0 (0 ms) 21: [ RUN ] BitmaskTest32_11/BitmaskTest32.ToHex/0 21: [ OK ] BitmaskTest32_11/BitmaskTest32.ToHex/0 (0 ms) -21: [----------] 6 tests from BitmaskTest32_11/BitmaskTest32 (0 ms total) +21: [----------] 6 tests from BitmaskTest32_11/BitmaskTest32 (1 ms total) 21: 21: [----------] 12 tests from BitmaskTest64_10_42/BitmaskTest64 21: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/0 @@ -58822,7 +58854,7 @@ 21: 21: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 -21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (2 ms) +21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (1 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 (0 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 @@ -58839,7 +58871,7 @@ 21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 (0 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 (0 ms) -21: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (3 ms total) +21: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (2 ms total) 21: 21: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest 21: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 @@ -58849,9 +58881,9 @@ 21: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/2 21: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/2 (0 ms) 21: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/3 -21: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/3 (1 ms) +21: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/3 (0 ms) 21: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/4 -21: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/4 (0 ms) +21: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/4 (1 ms) 21: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5 21: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5 (0 ms) 21: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6 @@ -58859,9 +58891,9 @@ 21: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest (1 ms total) 21: 21: [----------] Global test environment tear-down -21: [==========] 325 tests from 52 test cases ran. (29 ms total) +21: [==========] 325 tests from 52 test cases ran. (22 ms total) 21: [ PASSED ] 325 tests. -21/27 Test #21: UtilityUnitTests ................. Passed 0.08 sec +21/27 Test #21: UtilityUnitTests ................. Passed 0.07 sec test 22 Start 22: UtilityMpiUnitTests @@ -58877,7 +58909,7 @@ 22: [----------] 2 tests from PhysicalNodeCommunicatorTest (0 ms total) 22: 22: [----------] Global test environment tear-down -22: [==========] 2 tests from 1 test case ran. (0 ms total) +22: [==========] 2 tests from 1 test case ran. (1 ms total) 22: [ PASSED ] 2 tests. 22/27 Test #22: UtilityMpiUnitTests .............. Passed 0.07 sec test 23 @@ -58889,10 +58921,10 @@ 23: [----------] Global test environment set-up. 23: [----------] 2 tests from FileMD5Test 23: [ RUN ] FileMD5Test.CanComputeMD5 -23: [ OK ] FileMD5Test.CanComputeMD5 (2 ms) +23: [ OK ] FileMD5Test.CanComputeMD5 (1 ms) 23: [ RUN ] FileMD5Test.ReturnsErrorIfFileModeIsWrong 23: [ OK ] FileMD5Test.ReturnsErrorIfFileModeIsWrong (0 ms) -23: [----------] 2 tests from FileMD5Test (2 ms total) +23: [----------] 2 tests from FileMD5Test (1 ms total) 23: 23: [----------] 9 tests from ReadTest 23: [ RUN ] ReadTest.get_eint_ReadsInteger @@ -58943,7 +58975,7 @@ 23: 23: 23: [ OK ] ReadTest.get_ereal_WarnsAboutString (0 ms) -23: [----------] 9 tests from ReadTest (0 ms total) +23: [----------] 9 tests from ReadTest (1 ms total) 23: 23: [----------] 2 tests from TngTest 23: [ RUN ] TngTest.CanOpenTngFile @@ -58956,15 +58988,15 @@ 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 (1 ms) 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 -23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (1 ms) +23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (0 ms) 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 -23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (3 ms) +23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (4 ms) 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (0 ms) -23: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (6 ms total) +23: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (5 ms total) 23: 23: [----------] Global test environment tear-down -23: [==========] 17 tests from 4 test cases ran. (8 ms total) +23: [==========] 17 tests from 4 test cases ran. (7 ms total) 23: [ PASSED ] 17 tests. 23/27 Test #23: FileIOTests ...................... Passed 0.04 sec test 24 @@ -58976,7 +59008,7 @@ 24: [----------] Global test environment set-up. 24: [----------] 5 tests from PullTest 24: [ RUN ] PullTest.MaxPullDistanceXyzScrewBox -24: [ OK ] PullTest.MaxPullDistanceXyzScrewBox (1 ms) +24: [ OK ] PullTest.MaxPullDistanceXyzScrewBox (0 ms) 24: [ RUN ] PullTest.MaxPullDistanceXyzCubicBox 24: [ OK ] PullTest.MaxPullDistanceXyzCubicBox (0 ms) 24: [ RUN ] PullTest.MaxPullDistanceXyzTricBox @@ -58985,12 +59017,12 @@ 24: [ OK ] PullTest.MaxPullDistanceXyzLongBox (0 ms) 24: [ RUN ] PullTest.MaxPullDistanceXySkewedBox 24: [ OK ] PullTest.MaxPullDistanceXySkewedBox (0 ms) -24: [----------] 5 tests from PullTest (1 ms total) +24: [----------] 5 tests from PullTest (0 ms total) 24: 24: [----------] Global test environment tear-down -24: [==========] 5 tests from 1 test case ran. (1 ms total) +24: [==========] 5 tests from 1 test case ran. (0 ms total) 24: [ PASSED ] 5 tests. -24/27 Test #24: PullTest ......................... Passed 0.04 sec +24/27 Test #24: PullTest ......................... Passed 0.03 sec test 25 Start 25: AwhTest @@ -59000,17 +59032,17 @@ 25: [----------] Global test environment set-up. 25: [----------] 1 test from BiasTest 25: [ RUN ] BiasTest.DetectsCovering -25: [ OK ] BiasTest.DetectsCovering (0 ms) -25: [----------] 1 test from BiasTest (0 ms total) +25: [ OK ] BiasTest.DetectsCovering (1 ms) +25: [----------] 1 test from BiasTest (1 ms total) 25: 25: [----------] 1 test from gridTest 25: [ RUN ] gridTest.neighborhood -25: [ OK ] gridTest.neighborhood (1 ms) -25: [----------] 1 test from gridTest (1 ms total) +25: [ OK ] gridTest.neighborhood (2 ms) +25: [----------] 1 test from gridTest (3 ms total) 25: 25: [----------] 8 tests from WithParameters/BiasTest 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/0 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (0 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (1 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/1 25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/1 (0 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/2 @@ -59018,7 +59050,7 @@ 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/3 25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (0 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/4 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/4 (1 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/4 (0 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/5 25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/5 (1 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/6 @@ -59031,11 +59063,11 @@ 25: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/0 25: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/0 (0 ms) 25: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/1 -25: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/1 (1 ms) +25: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/1 (0 ms) 25: [----------] 2 tests from WithParameters/BiasStateTest (1 ms total) 25: 25: [----------] Global test environment tear-down -25: [==========] 12 tests from 4 test cases ran. (8 ms total) +25: [==========] 12 tests from 4 test cases ran. (10 ms total) 25: [ PASSED ] 12 tests. 25/27 Test #25: AwhTest .......................... Passed 0.04 sec test 26 @@ -59058,7 +59090,7 @@ 26: [ OK ] SimdBootstrapTest.loadUI (0 ms) 26: [ RUN ] SimdBootstrapTest.storeUI 26: [ OK ] SimdBootstrapTest.storeUI (0 ms) -26: [----------] 6 tests from SimdBootstrapTest (1 ms total) +26: [----------] 6 tests from SimdBootstrapTest (0 ms total) 26: 26: [----------] 1 test from SimdTest 26: [ RUN ] SimdTest.GmxAligned @@ -59150,7 +59182,7 @@ 26: [ OK ] SimdFloatingpointTest.cvtFloat2Double (0 ms) 26: [ RUN ] SimdFloatingpointTest.cvtDouble2Float 26: [ OK ] SimdFloatingpointTest.cvtDouble2Float (0 ms) -26: [----------] 42 tests from SimdFloatingpointTest (0 ms total) +26: [----------] 42 tests from SimdFloatingpointTest (1 ms total) 26: 26: [----------] 13 tests from SimdFloatingpointUtilTest 26: [ RUN ] SimdFloatingpointUtilTest.gatherLoadTranspose4 @@ -59179,7 +59211,7 @@ 26: [ OK ] SimdFloatingpointUtilTest.gatherLoadUBySimdIntTranspose2 (0 ms) 26: [ RUN ] SimdFloatingpointUtilTest.reduceIncr4Sum 26: [ OK ] SimdFloatingpointUtilTest.reduceIncr4Sum (0 ms) -26: [----------] 13 tests from SimdFloatingpointUtilTest (1 ms total) +26: [----------] 13 tests from SimdFloatingpointUtilTest (0 ms total) 26: 26: [----------] 3 tests from SimdVectorOperationsTest 26: [ RUN ] SimdVectorOperationsTest.iprod @@ -59194,13 +59226,13 @@ 26: [ RUN ] SimdMathTest.copysign 26: [ OK ] SimdMathTest.copysign (0 ms) 26: [ RUN ] SimdMathTest.invsqrt -26: [ OK ] SimdMathTest.invsqrt (1 ms) +26: [ OK ] SimdMathTest.invsqrt (0 ms) 26: [ RUN ] SimdMathTest.maskzInvsqrt 26: [ OK ] SimdMathTest.maskzInvsqrt (0 ms) 26: [ RUN ] SimdMathTest.invsqrtPair -26: [ OK ] SimdMathTest.invsqrtPair (7 ms) +26: [ OK ] SimdMathTest.invsqrtPair (2 ms) 26: [ RUN ] SimdMathTest.sqrt -26: [ OK ] SimdMathTest.sqrt (1 ms) +26: [ OK ] SimdMathTest.sqrt (2 ms) 26: [ RUN ] SimdMathTest.sqrtUnsafe 26: [ OK ] SimdMathTest.sqrtUnsafe (1 ms) 26: [ RUN ] SimdMathTest.inv @@ -59208,25 +59240,25 @@ 26: [ RUN ] SimdMathTest.maskzInv 26: [ OK ] SimdMathTest.maskzInv (0 ms) 26: [ RUN ] SimdMathTest.log -26: [ OK ] SimdMathTest.log (2 ms) +26: [ OK ] SimdMathTest.log (1 ms) 26: [ RUN ] SimdMathTest.exp2 -26: [ OK ] SimdMathTest.exp2 (3 ms) +26: [ OK ] SimdMathTest.exp2 (4 ms) 26: [ RUN ] SimdMathTest.exp2Unsafe -26: [ OK ] SimdMathTest.exp2Unsafe (2 ms) +26: [ OK ] SimdMathTest.exp2Unsafe (1 ms) 26: [ RUN ] SimdMathTest.exp -26: [ OK ] SimdMathTest.exp (3 ms) +26: [ OK ] SimdMathTest.exp (4 ms) 26: [ RUN ] SimdMathTest.expUnsafe -26: [ OK ] SimdMathTest.expUnsafe (2 ms) +26: [ OK ] SimdMathTest.expUnsafe (1 ms) 26: [ RUN ] SimdMathTest.erf 26: [ OK ] SimdMathTest.erf (2 ms) 26: [ RUN ] SimdMathTest.erfc -26: [ OK ] SimdMathTest.erfc (2 ms) +26: [ OK ] SimdMathTest.erfc (3 ms) 26: [ RUN ] SimdMathTest.sin -26: [ OK ] SimdMathTest.sin (3 ms) +26: [ OK ] SimdMathTest.sin (2 ms) 26: [ RUN ] SimdMathTest.cos 26: [ OK ] SimdMathTest.cos (3 ms) 26: [ RUN ] SimdMathTest.tan -26: [ OK ] SimdMathTest.tan (12 ms) +26: [ OK ] SimdMathTest.tan (7 ms) 26: [ RUN ] SimdMathTest.asin 26: [ OK ] SimdMathTest.asin (2 ms) 26: [ RUN ] SimdMathTest.acos @@ -59236,25 +59268,25 @@ 26: [ RUN ] SimdMathTest.atan2 26: [ OK ] SimdMathTest.atan2 (0 ms) 26: [ RUN ] SimdMathTest.pmeForceCorrection -26: [ OK ] SimdMathTest.pmeForceCorrection (2 ms) +26: [ OK ] SimdMathTest.pmeForceCorrection (3 ms) 26: [ RUN ] SimdMathTest.pmePotentialCorrection 26: [ OK ] SimdMathTest.pmePotentialCorrection (2 ms) 26: [ RUN ] SimdMathTest.invsqrtSingleAccuracy -26: [ OK ] SimdMathTest.invsqrtSingleAccuracy (0 ms) +26: [ OK ] SimdMathTest.invsqrtSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.invsqrtPairSingleAccuracy 26: [ OK ] SimdMathTest.invsqrtPairSingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.sqrtSingleAccuracy -26: [ OK ] SimdMathTest.sqrtSingleAccuracy (2 ms) +26: [ OK ] SimdMathTest.sqrtSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.sqrtSingleAccuracyUnsafe -26: [ OK ] SimdMathTest.sqrtSingleAccuracyUnsafe (0 ms) +26: [ OK ] SimdMathTest.sqrtSingleAccuracyUnsafe (1 ms) 26: [ RUN ] SimdMathTest.invSingleAccuracy -26: [ OK ] SimdMathTest.invSingleAccuracy (2 ms) +26: [ OK ] SimdMathTest.invSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.logSingleAccuracy 26: [ OK ] SimdMathTest.logSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.exp2SingleAccuracy -26: [ OK ] SimdMathTest.exp2SingleAccuracy (6 ms) +26: [ OK ] SimdMathTest.exp2SingleAccuracy (3 ms) 26: [ RUN ] SimdMathTest.exp2SingleAccuracyUnsafe -26: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (2 ms) +26: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (1 ms) 26: [ RUN ] SimdMathTest.expSingleAccuracy 26: [ OK ] SimdMathTest.expSingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.expSingleAccuracyUnsafe @@ -59264,7 +59296,7 @@ 26: [ RUN ] SimdMathTest.erfcSingleAccuracy 26: [ OK ] SimdMathTest.erfcSingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.sinSingleAccuracy -26: [ OK ] SimdMathTest.sinSingleAccuracy (4 ms) +26: [ OK ] SimdMathTest.sinSingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.cosSingleAccuracy 26: [ OK ] SimdMathTest.cosSingleAccuracy (3 ms) 26: [ RUN ] SimdMathTest.tanSingleAccuracy @@ -59272,16 +59304,16 @@ 26: [ RUN ] SimdMathTest.asinSingleAccuracy 26: [ OK ] SimdMathTest.asinSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.acosSingleAccuracy -26: [ OK ] SimdMathTest.acosSingleAccuracy (2 ms) +26: [ OK ] SimdMathTest.acosSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.atanSingleAccuracy -26: [ OK ] SimdMathTest.atanSingleAccuracy (5 ms) +26: [ OK ] SimdMathTest.atanSingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.atan2SingleAccuracy 26: [ OK ] SimdMathTest.atan2SingleAccuracy (0 ms) 26: [ RUN ] SimdMathTest.pmeForceCorrectionSingleAccuracy -26: [ OK ] SimdMathTest.pmeForceCorrectionSingleAccuracy (3 ms) +26: [ OK ] SimdMathTest.pmeForceCorrectionSingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.pmePotentialCorrectionSingleAccuracy 26: [ OK ] SimdMathTest.pmePotentialCorrectionSingleAccuracy (2 ms) -26: [----------] 45 tests from SimdMathTest (104 ms total) +26: [----------] 45 tests from SimdMathTest (81 ms total) 26: 26: [----------] 1 test from EmptyArrayRefTest 26: [ RUN ] EmptyArrayRefTest.IsEmpty @@ -59322,7 +59354,7 @@ 26: [ OK ] ArrayRefTest/3.ConstructFromArrayRefWorks (0 ms) 26: [ RUN ] ArrayRefTest/3.ConstructFromArrayWorks 26: [ OK ] ArrayRefTest/3.ConstructFromArrayWorks (0 ms) -26: [----------] 3 tests from ArrayRefTest/3 (0 ms total) +26: [----------] 3 tests from ArrayRefTest/3 (1 ms total) 26: 26: [----------] 1 test from ArrayRefReadWriteTest/0, where TypeParam = gmx::ArrayRef 26: [ RUN ] ArrayRefReadWriteTest/0.Assignment @@ -59391,7 +59423,7 @@ 26: [ OK ] SimdIntegerTest.cvtB2IB (0 ms) 26: [ RUN ] SimdIntegerTest.cvtIB2B 26: [ OK ] SimdIntegerTest.cvtIB2B (0 ms) -26: [----------] 23 tests from SimdIntegerTest (1 ms total) +26: [----------] 23 tests from SimdIntegerTest (0 ms total) 26: 26: [----------] 41 tests from SimdScalarTest 26: [ RUN ] SimdScalarTest.load @@ -59572,12 +59604,12 @@ 26: [ OK ] SimdScalarMathTest.pmeForceCorrectionSingleAccuracy (0 ms) 26: [ RUN ] SimdScalarMathTest.pmePotentialCorrectionSingleAccuracy 26: [ OK ] SimdScalarMathTest.pmePotentialCorrectionSingleAccuracy (0 ms) -26: [----------] 37 tests from SimdScalarMathTest (2 ms total) +26: [----------] 37 tests from SimdScalarMathTest (1 ms total) 26: 26: [----------] Global test environment tear-down -26: [==========] 236 tests from 19 test cases ran. (110 ms total) +26: [==========] 236 tests from 19 test cases ran. (86 ms total) 26: [ PASSED ] 236 tests. -26/27 Test #26: SimdUnitTests .................... Passed 0.15 sec +26/27 Test #26: SimdUnitTests .................... Passed 0.13 sec test 27 Start 27: CompatibilityHelpersTests @@ -59623,11 +59655,11 @@ 100% tests passed, 0 tests failed out of 27 Label Time Summary: -GTest = 3.00 sec*proc (27 tests) -MpiTest = 0.21 sec*proc (3 tests) -UnitTest = 3.00 sec*proc (27 tests) +GTest = 2.94 sec*proc (27 tests) +MpiTest = 0.39 sec*proc (3 tests) +UnitTest = 2.94 sec*proc (27 tests) -Total Test time (real) = 3.05 sec +Total Test time (real) = 2.98 sec touch build-mpich dh_testdir /usr/bin/make -j8 -C build/openmpi @@ -59638,14 +59670,14 @@ make[2]: Entering directory '/build/gromacs-2019.1/build/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend -make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs /build/gromacs-2019.1/build/openmpi/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs /build/gromacs-2019.1/build/openmpi/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs /build/gromacs-2019.1/build/openmpi/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend +make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' +cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs /build/gromacs-2019.1/build/openmpi/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs /build/gromacs-2019.1/build/openmpi/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend @@ -59656,81 +59688,81 @@ /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/gromacs-2019.1/src/external/lmfit/lmmin.cpp -Scanning dependencies of target libgromacs_external -make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build -make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/eigensolver.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/gmx_arpack.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/matrix.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/nrjac.cpp Scanning dependencies of target mdrun_objlib make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +Scanning dependencies of target libgromacs_external make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/programs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/mdrun.cpp +make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build Scanning dependencies of target tng_io_obj make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' +cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/eigensolver.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/gmx_arpack.cpp +make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/bwlzh.c +cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/matrix.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/bwt.c Scanning dependencies of target libgromacs_generated make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/sparsematrix.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/coder.c +cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/nrjac.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/dict.c +cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/sparsematrix.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/fixpoint.c +cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/huffman.c +cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/huffmem.c cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/errhandler.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/tmpi_malloc.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/bwt.c +cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/atomic.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/lock.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/lz77.c cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/pthreads.cpp +make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +[ 0%] Built target mdrun_objlib cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/system_error.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/coder.c -cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/dict.c -cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/fixpoint.c -cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/huffman.c -cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/huffmem.c -cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/lz77.c -cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/merge_sort.c cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/mtf.c cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/rle.c cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/tng_compress.c cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/vals16.c -make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -[ 0%] Built target mdrun_objlib +cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/warnmalloc.c cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/widemuldiv.c cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/xtc2.c -cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/xtc3.c -cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c -cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/lib/md5.c cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/xtc3.c cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/lib/md5.c cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' [ 1%] Built target lmfit_objlib -cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp -make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -[ 2%] Built target libgromacs_external cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp +make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp +[ 2%] Built target libgromacs_external cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp @@ -59762,6 +59794,8 @@ cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp /build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c: In function 'tng_time_get_str': /build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c:15188:24: warning: '%02d' directive output may be truncated writing between 2 and 11 bytes into a region of size between 0 and 16 [-Wformat-truncation=] "%4d-%02d-%02d %02d:%02d:%02d", @@ -59774,8 +59808,6 @@ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp @@ -59789,11 +59821,11 @@ cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp -make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -[ 5%] Built target tng_io_obj cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp +make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +[ 5%] Built target tng_io_obj cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp @@ -60437,13 +60469,13 @@ /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend -cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend @@ -60454,51 +60486,60 @@ /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/gromacs-2019.1/src/external/lmfit/lmmin.cpp -Scanning dependencies of target tng_io_obj -make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build -make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/bwlzh.c -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/bwt.c -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/coder.c -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/dict.c Scanning dependencies of target mdrun_objlib make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' +cd /build/gromacs-2019.1/build/openmpi-dp/src/programs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/mdrun.cpp Scanning dependencies of target libgromacs_external make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build -make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp/src/programs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/mdrun.cpp +Scanning dependencies of target tng_io_obj +make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/eigensolver.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/fixpoint.c +make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/bwlzh.c +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/gmx_arpack.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/matrix.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/nrjac.cpp Scanning dependencies of target libgromacs_generated make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/huffman.c make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/huffmem.c -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/gmx_arpack.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/sparsematrix.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/errhandler.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/bwt.c +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/tmpi_malloc.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/atomic.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/lock.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/pthreads.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/system_error.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/coder.c +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/dict.c +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/fixpoint.c +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/huffman.c +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/huffmem.c +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/lz77.c cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/merge_sort.c cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/mtf.c cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/rle.c +make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +[ 0%] Built target mdrun_objlib cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/tng_compress.c cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/vals16.c cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/warnmalloc.c cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/widemuldiv.c cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/xtc2.c -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/xtc3.c -make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -[ 0%] Built target mdrun_objlib cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/lib/md5.c cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/openmpi-dp/tng/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/lib/md5.c cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp @@ -60511,18 +60552,19 @@ cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' [ 1%] Built target lmfit_objlib +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp +make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +[ 2%] Built target libgromacs_external cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 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/build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast 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/build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG 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-DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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/build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG 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-DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat 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CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/errhandler.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/tmpi_malloc.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/atomic.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/lock.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/pthreads.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/system_error.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp /build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c: In function 'tng_time_get_str': /build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c:15188:24: warning: '%02d' directive output may be truncated writing between 2 and 11 bytes into a region of size between 0 and 16 [-Wformat-truncation=] "%4d-%02d-%02d %02d:%02d:%02d", @@ -60567,11 +60604,6 @@ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -[ 2%] Built target libgromacs_external -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp @@ -60583,10 +60615,10 @@ cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp -make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -[ 5%] Built target tng_io_obj cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp +make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +[ 5%] Built target tng_io_obj cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp @@ -61241,24 +61273,22 @@ /usr/bin/make -f CMakeFiles/Makefile2 CMakeFiles/tests.dir/all make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs /build/gromacs-2019.1/build/openmpi/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs /build/gromacs-2019.1/build/openmpi/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend /usr/bin/make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs /build/gromacs-2019.1/build/openmpi/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/external/googletest /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/external/googletest /build/gromacs-2019.1/build/openmpi/src/external/googletest/CMakeFiles/gmock.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs /build/gromacs-2019.1/build/openmpi/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend +/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' @@ -61266,38 +61296,40 @@ make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs /build/gromacs-2019.1/build/openmpi/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build -[ 1%] Built target lmfit_objlib +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -Scanning dependencies of target mdrunutility-test-shared +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' Scanning dependencies of target gmock -[ 2%] Built target libgromacs_external make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' /usr/bin/make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/build -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -Scanning dependencies of target onlinehelp-test-shared -/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +[ 1%] Built target lmfit_objlib make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/external/googletest && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googlemock -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/googletest/googletest -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o -c /build/gromacs-2019.1/src/external/googletest/googlemock/src/gmock-all.cc -[ 4%] Built target tng_io_obj cd /build/gromacs-2019.1/build/openmpi/src/external/googletest && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googlemock -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/googletest/googletest -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o -c /build/gromacs-2019.1/src/external/googletest/googletest/src/gtest-all.cc +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp +[ 3%] Built target tng_io_obj +[ 4%] Built target libgromacs_external +Scanning dependencies of target onlinehelp-test-shared +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build +Scanning dependencies of target mdrunutility-test-shared +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/mock_helptopic.cpp make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' [ 22%] Built target libgromacs_generated @@ -61360,57 +61392,57 @@ make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/testutils/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/testutils/tests /build/gromacs-2019.1/build/openmpi/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend -/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/testutils/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/testutils/tests /build/gromacs-2019.1/build/openmpi/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdlib/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/applied-forces/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/applied-forces/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend +Scanning dependencies of target compat-test make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/listed-forces/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/listed-forces/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend -/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/domdec/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/domdec/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/commandline/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= -Scanning dependencies of target compat-test -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build +/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs/compat/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/make_unique.cpp.o -c /build/gromacs-2019.1/src/gromacs/compat/tests/make_unique.cpp +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' +cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/domdec/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/domdec/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= +Scanning dependencies of target testutils-mpi-test Scanning dependencies of target testutils-test -Scanning dependencies of target mdlib-test -Scanning dependencies of target listed-forces-test make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -Scanning dependencies of target applied-forces-test -Scanning dependencies of target domdec-test /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -Scanning dependencies of target testutils-mpi-test -/usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' +cd /build/gromacs-2019.1/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/mpitest.cpp +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' +cd /build/gromacs-2019.1/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/interactivetest.cpp +Scanning dependencies of target listed-forces-test +Scanning dependencies of target applied-forces-test make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +/usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build +/usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build +Scanning dependencies of target mdlib-test make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/interactivetest.cpp -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/applied-forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/electricfield.cpp.o -c /build/gromacs-2019.1/src/gromacs/applied-forces/tests/electricfield.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs/listed-forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/bonded.cpp.o -c /build/gromacs-2019.1/src/gromacs/listed-forces/tests/bonded.cpp make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/calc_verletbuf.cpp -/usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/mpitest.cpp +Scanning dependencies of target domdec-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' /usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/applied-forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/electricfield.cpp.o -c /build/gromacs-2019.1/src/gromacs/applied-forces/tests/electricfield.cpp -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs/domdec/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /build/gromacs-2019.1/src/gromacs/domdec/tests/hashedmap.cpp Scanning dependencies of target commandline-test make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' @@ -61419,9 +61451,9 @@ cd /build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp cd /build/gromacs-2019.1/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/compat/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /build/gromacs-2019.1/src/gromacs/compat/tests/pointers.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/listed-forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/openmpi/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/listed-forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/mdebin.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/mdebin.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' [ 83%] Built target testutils-mpi-test @@ -61433,15 +61465,14 @@ /usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmebsplinetest.cpp -cd /build/gromacs-2019.1/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/refdata_tests.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/listed-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed-forces-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/listed-forces-test.dir/bonded.cpp.o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/domdec/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/domdec/tests/localatomsetmanager.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/compat/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/domdec/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/domdec/tests/localatomsetmanager.cpp +cd /build/gromacs-2019.1/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/refdata_tests.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/applied-forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/compat-test.dir/make_unique.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/settle.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' [ 84%] Built target compat-test /usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend @@ -61452,10 +61483,11 @@ /usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs/fft/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/fft/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/fft.cpp.o -c /build/gromacs-2019.1/src/gromacs/fft/tests/fft.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/settle.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/applied-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied-forces-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/applied-forces-test.dir/electricfield.cpp.o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -[ 84%] Built target listed-forces-test +[ 84%] Built target applied-forces-test /usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/gpu_utils/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/gpu_utils/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= @@ -61465,7 +61497,7 @@ make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/gputest.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -[ 84%] Built target applied-forces-test +[ 84%] Built target listed-forces-test /usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/hardware/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/hardware/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= @@ -61475,8 +61507,8 @@ make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs/hardware/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /build/gromacs-2019.1/src/gromacs/hardware/tests/hardwaretopology.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/domdec/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/hostallocator.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' @@ -61492,10 +61524,11 @@ cd /build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmegathertest.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/fft/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/fft/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/testasserts_tests.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/hardware/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/hardware/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/shake.cpp +cd /build/gromacs-2019.1/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/testasserts_tests.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' [ 85%] Built target fft-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend @@ -61508,7 +61541,6 @@ cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinity.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/shake.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' [ 85%] Built target hardware-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend @@ -61519,14 +61551,19 @@ /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinity-mpi.cpp -cd /build/gromacs-2019.1/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/xvgtest_tests.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/dofit.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/dofit.cpp +cd /build/gromacs-2019.1/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/xvgtest_tests.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/simulationsignal.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/functions.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/functions.cpp cd /build/gromacs-2019.1/build/openmpi/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmesolvetest.cpp +/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' [ 86%] Built target testutils-test /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend @@ -61537,13 +61574,13 @@ /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpformat.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/simulationsignal.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmesolvetest.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' [ 86%] Built target mdrunutility-test +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmesplinespreadtest.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +[ 86%] Built target mdrunutility-mpi-test /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/options/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= @@ -61552,33 +61589,38 @@ /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/abstractoptionstorage.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpmanager.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -[ 86%] Built target mdrunutility-mpi-test -/usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/random/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= -Scanning dependencies of target random-test -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -/usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/exponentialdistribution.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/updategroups.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpmanager.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/invertmatrix.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlineparser.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/gammadistribution.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/updategroupscog.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/devicetransfers.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpwritercontext.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/updategroupscog.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpwritercontext.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmetestcommon.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/paddedvector.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/vectypes.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' [ 86%] Built target gpu_utils-test +/usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' +cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/random/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= +Scanning dependencies of target random-test +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +/usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/exponentialdistribution.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/mdebin.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +[ 87%] Built target onlinehelp-test /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/restraint/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/restraint/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake --color= @@ -61587,13 +61629,9 @@ /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs/restraint/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /build/gromacs-2019.1/src/gromacs/restraint/tests/manager.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmesplinespreadtest.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/testhardwarecontexts.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -[ 87%] Built target onlinehelp-test +[ 88%] Built target mdlib-test /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/tables/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/tables/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= @@ -61602,15 +61640,18 @@ /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs/tables/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/tables/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /build/gromacs-2019.1/src/gromacs/tables/tests/splinetable.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/filenameoption.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/restraint/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/normaldistribution.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/mdebin.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/gammadistribution.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/filenameoption.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/pargs.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -[ 88%] Built target restraintpotential-test +[ 89%] Built target restraintpotential-test /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/taskassignment/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/taskassignment/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= @@ -61619,9 +61660,6 @@ /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /build/gromacs-2019.1/src/gromacs/taskassignment/tests/usergpuids.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/pargs.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -[ 89%] Built target mdlib-test /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/utility/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake --color= @@ -61630,12 +61668,8 @@ /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/physicalnodecommunicator-mpi.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/seed.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/seed.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -[ 90%] Built target utility-mpi-test +[ 90%] Built target ewald-test /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/utility/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= @@ -61644,17 +61678,13 @@ /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/alignedallocator.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm cd /build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/filenameoptionmanager.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/tabulatednormaldistribution.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmetestcommon.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/normaldistribution.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -[ 91%] Built target taskassignment-test +[ 91%] Built target utility-mpi-test /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/fileio/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/fileio/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= @@ -61663,6 +61693,10 @@ /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/confio.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' [ 92%] Built target commandline-test /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend @@ -61673,15 +61707,12 @@ /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs/pulling/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/pull.cpp.o -c /build/gromacs-2019.1/src/gromacs/pulling/tests/pull.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/testhardwarecontexts.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/pulling/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/threefry.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 cd /build/gromacs-2019.1/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/filemd5.cpp -/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/seed.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/seed.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -[ 92%] Built target pull-test +[ 93%] Built target taskassignment-test /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/awh/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/awh/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= @@ -61690,72 +61721,71 @@ /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/bias.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/bias.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/option.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/option.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/pulling/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/arrayref.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/readinp.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/tabulatednormaldistribution.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -[ 93%] Built target ewald-test +[ 93%] Built target pull-test /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/simd/tests /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= Scanning dependencies of target simd-test make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/readinp.cpp make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/bootstrap_loadstore.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/vectypes.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/arrayref.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/option.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/option.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +[ 93%] Built target math-test cd /build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/optionsassigner.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/repeatingsection.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/tngio.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/tables/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/tables/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/base.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/base.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' [ 93%] Built target table-test -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/repeatingsection.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/base.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/base.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/tngio.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformintdistribution.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/threefry.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/biasstate.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' [ 93%] Built target fileio-test +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformintdistribution.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_floatingpoint.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/biasstate.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -[ 93%] Built target math-test -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/grid.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/grid.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformrealdistribution.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_floatingpoint_util.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/timeunitmanager.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformrealdistribution.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/grid.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/grid.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_floatingpoint_util.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_vector_operations.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/treesupport.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' [ 93%] Built target awh-test cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_math.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o 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-DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_memory.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_integer.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' [ 94%] Built target random-test -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask32.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4_floatingpoint.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4_vector_operations.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4_math.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/scalar.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask64.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/scalar_util.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/scalar_math.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 @@ -61763,19 +61793,21 @@ cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' [ 95%] Built target options-test +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask32.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask64.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask128.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/keyvaluetreeserializer.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/keyvaluetreetransform.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/gmxregex.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/gmxregex.cpp +cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/logger.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/logger.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +[ 97%] Built target simd-test cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/mutex.cpp -cd /build/gromacs-2019.1/build/openmpi/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/path.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/path.cpp -/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/physicalnodecommunicator.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/stringutil.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -[ 97%] Built target simd-test cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/textreader.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/textwriter.cpp cd /build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/typetraits.cpp @@ -61819,11 +61851,11 @@ 1: Test command: /build/gromacs-2019.1/build/openmpi/bin/testutils-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/TestUtilsUnitTests.xml" 1: Test timeout computed to be: 30 1: -------------------------------------------------------------------------- -1: [[23842,1],0]: A high-performance Open MPI point-to-point messaging module +1: [[36496,1],0]: A high-performance Open MPI point-to-point messaging module 1: was unable to find any relevant network interfaces: 1: 1: Module: OpenFabrics (openib) -1: Host: codethink13-arm64 +1: Host: i-capture-the-hostname 1: 1: Another transport will be used instead, although this may result in 1: lower performance. @@ -61837,13 +61869,13 @@ 1: [ RUN ] InteractiveTestHelperTest.ChecksSimpleSession 1: [ OK ] InteractiveTestHelperTest.ChecksSimpleSession (1 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline -1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline (0 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline (1 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput -1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput (1 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput -1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput (0 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsIncorrectOutput -1: [ OK ] InteractiveTestHelperTest.DetectsIncorrectOutput (1 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsIncorrectOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingOutput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingFinalOutput @@ -61851,80 +61883,80 @@ 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraOutput 1: [ OK ] InteractiveTestHelperTest.DetectsExtraOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingInput -1: [ OK ] InteractiveTestHelperTest.DetectsMissingInput (0 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsMissingInput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraInput -1: [ OK ] InteractiveTestHelperTest.DetectsExtraInput (1 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsExtraInput (0 ms) 1: [----------] 10 tests from InteractiveTestHelperTest (6 ms total) 1: 1: [----------] 34 tests from ReferenceDataTest 1: [ RUN ] ReferenceDataTest.HandlesSimpleData 1: [ OK ] ReferenceDataTest.HandlesSimpleData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesFloatingPointData -1: [ OK ] ReferenceDataTest.HandlesFloatingPointData (0 ms) +1: [ OK ] ReferenceDataTest.HandlesFloatingPointData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesPresenceChecks 1: [ OK ] ReferenceDataTest.HandlesPresenceChecks (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesStringBlockData -1: [ OK ] ReferenceDataTest.HandlesStringBlockData (1 ms) +1: [ OK ] ReferenceDataTest.HandlesStringBlockData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVectorData 1: [ OK ] ReferenceDataTest.HandlesVectorData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceData 1: [ OK ] ReferenceDataTest.HandlesSequenceData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceOfCustomData -1: [ OK ] ReferenceDataTest.HandlesSequenceOfCustomData (1 ms) +1: [ OK ] ReferenceDataTest.HandlesSequenceOfCustomData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectData -1: [ OK ] ReferenceDataTest.HandlesIncorrectData (0 ms) +1: [ OK ] ReferenceDataTest.HandlesIncorrectData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectDataType -1: [ OK ] ReferenceDataTest.HandlesIncorrectDataType (1 ms) +1: [ OK ] ReferenceDataTest.HandlesIncorrectDataType (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingData 1: [ OK ] ReferenceDataTest.HandlesMissingData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedData -1: [ OK ] ReferenceDataTest.HandlesUncheckedData (0 ms) +1: [ OK ] ReferenceDataTest.HandlesUncheckedData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInSequence -1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInSequence (1 ms) +1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInSequence (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInCompound 1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInCompound (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariants -1: [ OK ] ReferenceDataTest.HandlesVariants (0 ms) +1: [ OK ] ReferenceDataTest.HandlesVariants (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTree -1: [ OK ] ReferenceDataTest.HandlesKeyValueTree (1 ms) +1: [ OK ] ReferenceDataTest.HandlesKeyValueTree (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeExtraKey 1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeExtraKey (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeMissingKey -1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeMissingKey (0 ms) +1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeMissingKey (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectValue -1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectValue (1 ms) +1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectValue (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectType -1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectType (0 ms) +1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectType (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingReferenceDataFile 1: [ OK ] ReferenceDataTest.HandlesMissingReferenceDataFile (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSpecialCharactersInStrings -1: [ OK ] ReferenceDataTest.HandlesSpecialCharactersInStrings (1 ms) +1: [ OK ] ReferenceDataTest.HandlesSpecialCharactersInStrings (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace 1: [ OK ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmptyStrings -1: [ OK ] ReferenceDataTest.HandlesEmptyStrings (0 ms) +1: [ OK ] ReferenceDataTest.HandlesEmptyStrings (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock -1: [ OK ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock (1 ms) +1: [ OK ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceItemIndices -1: [ OK ] ReferenceDataTest.HandlesSequenceItemIndices (0 ms) +1: [ OK ] ReferenceDataTest.HandlesSequenceItemIndices (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData -1: [ OK ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData (1 ms) +1: [ OK ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleNullIds 1: [ OK ] ReferenceDataTest.HandlesMultipleNullIds (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds -1: [ OK ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds (0 ms) +1: [ OK ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesReadingValues -1: [ OK ] ReferenceDataTest.HandlesReadingValues (1 ms) +1: [ OK ] ReferenceDataTest.HandlesReadingValues (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges (0 ms) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges (1 ms) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (0 ms) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (1 ms) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (0 ms) 1: [----------] 34 tests from ReferenceDataTest (12 ms total) 1: 1: [----------] 7 tests from FloatingPointDifferenceTest @@ -61959,28 +61991,28 @@ 1: [ RUN ] XvgTests.CreateFile 1: [ OK ] XvgTests.CreateFile (1 ms) 1: [ RUN ] XvgTests.CheckMissing -1: [ OK ] XvgTests.CheckMissing (0 ms) +1: [ OK ] XvgTests.CheckMissing (1 ms) 1: [ RUN ] XvgTests.CheckExtra -1: [ OK ] XvgTests.CheckExtra (1 ms) +1: [ OK ] XvgTests.CheckExtra (0 ms) 1: [ RUN ] XvgTests.ReadIncorrect -1: [ OK ] XvgTests.ReadIncorrect (0 ms) -1: [----------] 4 tests from XvgTests (3 ms total) +1: [ OK ] XvgTests.ReadIncorrect (5 ms) +1: [----------] 4 tests from XvgTests (7 ms total) 1: 1: [----------] Global test environment tear-down -1: [==========] 59 tests from 5 test cases ran. (21 ms total) +1: [==========] 59 tests from 5 test cases ran. (25 ms total) 1: [ PASSED ] 59 tests. - 1/27 Test #1: TestUtilsUnitTests ............... Passed 0.29 sec + 1/27 Test #1: TestUtilsUnitTests ............... Passed 0.33 sec test 2 Start 2: TestUtilsMpiUnitTests 2: Test command: /usr/bin/mpiexec.openmpi "-np" "2" "/build/gromacs-2019.1/build/openmpi/bin/testutils-mpi-test" "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/TestUtilsMpiUnitTests.xml" 2: Test timeout computed to be: 30 2: -------------------------------------------------------------------------- -2: [[23867,1],1]: A high-performance Open MPI point-to-point messaging module +2: [[36510,1],1]: A high-performance Open MPI point-to-point messaging module 2: was unable to find any relevant network interfaces: 2: 2: Module: OpenFabrics (openib) -2: Host: codethink13-arm64 +2: Host: i-capture-the-hostname 2: 2: Another transport will be used instead, although this may result in 2: lower performance. @@ -61993,25 +62025,25 @@ 2: [----------] 1 test from MpiSelfTest 2: [ RUN ] MpiSelfTest.Runs 2: [ OK ] MpiSelfTest.Runs (0 ms) -2: [----------] 1 test from MpiSelfTest (0 ms total) +2: [----------] 1 test from MpiSelfTest (1 ms total) 2: 2: [----------] Global test environment tear-down -2: [==========] 1 test from 1 test case ran. (0 ms total) +2: [==========] 1 test from 1 test case ran. (2 ms total) 2: [ PASSED ] 1 test. -2: [codethink13-arm64:31666] 1 more process has sent help message help-mpi-btl-base.txt / btl:no-nics -2: [codethink13-arm64:31666] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages - 2/27 Test #2: TestUtilsMpiUnitTests ............ Passed 0.41 sec +2: [i-capture-the-hostname:00975] 1 more process has sent help message help-mpi-btl-base.txt / btl:no-nics +2: [i-capture-the-hostname:00975] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages + 2/27 Test #2: TestUtilsMpiUnitTests ............ Passed 0.37 sec test 3 Start 3: MdlibUnitTest 3: Test command: /build/gromacs-2019.1/build/openmpi/bin/mdlib-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/MdlibUnitTest.xml" 3: Test timeout computed to be: 30 3: -------------------------------------------------------------------------- -3: [[23881,1],0]: A high-performance Open MPI point-to-point messaging module +3: [[36528,1],0]: A high-performance Open MPI point-to-point messaging module 3: was unable to find any relevant network interfaces: 3: 3: Module: OpenFabrics (openib) -3: Host: codethink13-arm64 +3: Host: i-capture-the-hostname 3: 3: Another transport will be used instead, although this may result in 3: lower performance. @@ -62023,8 +62055,8 @@ 3: [----------] Global test environment set-up. 3: [----------] 1 test from VerletBufferConstraintTest 3: [ RUN ] VerletBufferConstraintTest.EqualMasses -3: [ OK ] VerletBufferConstraintTest.EqualMasses (1 ms) -3: [----------] 1 test from VerletBufferConstraintTest (1 ms total) +3: [ OK ] VerletBufferConstraintTest.EqualMasses (0 ms) +3: [----------] 1 test from VerletBufferConstraintTest (0 ms total) 3: 3: [----------] 3 tests from PrintEbin 3: [ RUN ] PrintEbin.print_ebin_HandlesEmptyAverages @@ -62032,19 +62064,19 @@ 3: [ RUN ] PrintEbin.pr_ebin_HandlesAverages 3: [ OK ] PrintEbin.pr_ebin_HandlesAverages (0 ms) 3: [ RUN ] PrintEbin.pr_ebin_HandlesEmptyAverages -3: [ OK ] PrintEbin.pr_ebin_HandlesEmptyAverages (0 ms) -3: [----------] 3 tests from PrintEbin (0 ms total) +3: [ OK ] PrintEbin.pr_ebin_HandlesEmptyAverages (1 ms) +3: [----------] 3 tests from PrintEbin (1 ms total) 3: 3: [----------] 4 tests from ShakeTest 3: [ RUN ] ShakeTest.ConstrainsOneBond -3: [ OK ] ShakeTest.ConstrainsOneBond (1 ms) +3: [ OK ] ShakeTest.ConstrainsOneBond (0 ms) 3: [ RUN ] ShakeTest.ConstrainsTwoDisjointBonds 3: [ OK ] ShakeTest.ConstrainsTwoDisjointBonds (0 ms) 3: [ RUN ] ShakeTest.ConstrainsTwoBondsWithACommonAtom 3: [ OK ] ShakeTest.ConstrainsTwoBondsWithACommonAtom (0 ms) 3: [ RUN ] ShakeTest.ConstrainsThreeBondsWithCommonAtoms 3: [ OK ] ShakeTest.ConstrainsThreeBondsWithCommonAtoms (0 ms) -3: [----------] 4 tests from ShakeTest (1 ms total) +3: [----------] 4 tests from ShakeTest (0 ms total) 3: 3: [----------] 1 test from NullSignalTest 3: [ RUN ] NullSignalTest.NullSignallerWorks @@ -62096,7 +62128,7 @@ 3: 3: [----------] 24 tests from WithParameters/SettleTest 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/0 -3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/0 (0 ms) +3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/0 (1 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/1 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/1 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/2 @@ -62148,18 +62180,18 @@ 3: [----------] Global test environment tear-down 3: [==========] 50 tests from 8 test cases ran. (4 ms total) 3: [ PASSED ] 50 tests. - 3/27 Test #3: MdlibUnitTest .................... Passed 0.25 sec + 3/27 Test #3: MdlibUnitTest .................... Passed 0.23 sec test 4 Start 4: AppliedForcesUnitTest 4: Test command: /build/gromacs-2019.1/build/openmpi/bin/applied-forces-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/AppliedForcesUnitTest.xml" 4: Test timeout computed to be: 30 4: -------------------------------------------------------------------------- -4: [[23873,1],0]: A high-performance Open MPI point-to-point messaging module +4: [[35158,1],0]: A high-performance Open MPI point-to-point messaging module 4: was unable to find any relevant network interfaces: 4: 4: Module: OpenFabrics (openib) -4: Host: codethink13-arm64 +4: Host: i-capture-the-hostname 4: 4: Another transport will be used instead, although this may result in 4: lower performance. @@ -62171,28 +62203,28 @@ 4: [----------] Global test environment set-up. 4: [----------] 3 tests from ElectricFieldTest 4: [ RUN ] ElectricFieldTest.Static -4: [ OK ] ElectricFieldTest.Static (1 ms) +4: [ OK ] ElectricFieldTest.Static (0 ms) 4: [ RUN ] ElectricFieldTest.Oscillating 4: [ OK ] ElectricFieldTest.Oscillating (0 ms) 4: [ RUN ] ElectricFieldTest.Pulsed 4: [ OK ] ElectricFieldTest.Pulsed (0 ms) -4: [----------] 3 tests from ElectricFieldTest (1 ms total) +4: [----------] 3 tests from ElectricFieldTest (0 ms total) 4: 4: [----------] Global test environment tear-down -4: [==========] 3 tests from 1 test case ran. (1 ms total) +4: [==========] 3 tests from 1 test case ran. (0 ms total) 4: [ PASSED ] 3 tests. - 4/27 Test #4: AppliedForcesUnitTest ............ Passed 0.27 sec + 4/27 Test #4: AppliedForcesUnitTest ............ Passed 0.23 sec test 5 Start 5: ListedForcesTest 5: Test command: /build/gromacs-2019.1/build/openmpi/bin/listed-forces-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/ListedForcesTest.xml" 5: Test timeout computed to be: 30 5: -------------------------------------------------------------------------- -5: [[23899,1],0]: A high-performance Open MPI point-to-point messaging module +5: [[35136,1],0]: A high-performance Open MPI point-to-point messaging module 5: was unable to find any relevant network interfaces: 5: 5: Module: OpenFabrics (openib) -5: Host: codethink13-arm64 +5: Host: i-capture-the-hostname 5: 5: Another transport will be used instead, although this may result in 5: lower performance. @@ -62210,7 +62242,7 @@ 5: [ RUN ] BondedTest.BondAnglePbcXyz 5: [ OK ] BondedTest.BondAnglePbcXyz (0 ms) 5: [ RUN ] BondedTest.DihedralAnglePbcNone -5: [ OK ] BondedTest.DihedralAnglePbcNone (0 ms) +5: [ OK ] BondedTest.DihedralAnglePbcNone (1 ms) 5: [ RUN ] BondedTest.DihedralAnglePbcXy 5: [ OK ] BondedTest.DihedralAnglePbcXy (0 ms) 5: [ RUN ] BondedTest.DihedralAnglePbcXyz @@ -62224,7 +62256,7 @@ 5: [ RUN ] BondedTest.IfuncAnglesPbcNo 5: [ OK ] BondedTest.IfuncAnglesPbcNo (0 ms) 5: [ RUN ] BondedTest.IfuncAnglesPbcXy -5: [ OK ] BondedTest.IfuncAnglesPbcXy (1 ms) +5: [ OK ] BondedTest.IfuncAnglesPbcXy (0 ms) 5: [ RUN ] BondedTest.IfuncAnglesPbcXYZ 5: [ OK ] BondedTest.IfuncAnglesPbcXYZ (0 ms) 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcNo @@ -62232,24 +62264,24 @@ 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcXy 5: [ OK ] BondedTest.IfuncProperDihedralsPbcXy (0 ms) 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcXyz -5: [ OK ] BondedTest.IfuncProperDihedralsPbcXyz (0 ms) +5: [ OK ] BondedTest.IfuncProperDihedralsPbcXyz (1 ms) 5: [----------] 15 tests from BondedTest (2 ms total) 5: 5: [----------] Global test environment tear-down 5: [==========] 15 tests from 1 test case ran. (2 ms total) 5: [ PASSED ] 15 tests. - 5/27 Test #5: ListedForcesTest ................. Passed 0.25 sec + 5/27 Test #5: ListedForcesTest ................. Passed 0.30 sec test 6 Start 6: CommandLineUnitTests 6: Test command: /build/gromacs-2019.1/build/openmpi/bin/commandline-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/CommandLineUnitTests.xml" 6: Test timeout computed to be: 30 6: -------------------------------------------------------------------------- -6: [[23890,1],0]: A high-performance Open MPI point-to-point messaging module +6: [[35144,1],0]: A high-performance Open MPI point-to-point messaging module 6: was unable to find any relevant network interfaces: 6: 6: Module: OpenFabrics (openib) -6: Host: codethink13-arm64 +6: Host: i-capture-the-hostname 6: 6: Another transport will be used instead, although this may result in 6: lower performance. @@ -62263,44 +62295,44 @@ 6: [ RUN ] CommandLineHelpModuleTest.PrintsGeneralHelp 6: [ OK ] CommandLineHelpModuleTest.PrintsGeneralHelp (1 ms) 6: [ RUN ] CommandLineHelpModuleTest.PrintsHelpOnTopic -6: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (1 ms) +6: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (0 ms) 6: [ RUN ] CommandLineHelpModuleTest.ExportsHelp 6: [ OK ] CommandLineHelpModuleTest.ExportsHelp (1 ms) -6: [----------] 3 tests from CommandLineHelpModuleTest (3 ms total) +6: [----------] 3 tests from CommandLineHelpModuleTest (2 ms total) 6: 6: [----------] 6 tests from CommandLineHelpWriterTest 6: [ RUN ] CommandLineHelpWriterTest.HandlesOptionTypes -6: [ OK ] CommandLineHelpWriterTest.HandlesOptionTypes (1 ms) +6: [ OK ] CommandLineHelpWriterTest.HandlesOptionTypes (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables 6: [ OK ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesLongFileOptions -6: [ OK ] CommandLineHelpWriterTest.HandlesLongFileOptions (0 ms) +6: [ OK ] CommandLineHelpWriterTest.HandlesLongFileOptions (1 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesLongOptions -6: [ OK ] CommandLineHelpWriterTest.HandlesLongOptions (1 ms) +6: [ OK ] CommandLineHelpWriterTest.HandlesLongOptions (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesOptionGroups 6: [ OK ] CommandLineHelpWriterTest.HandlesOptionGroups (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesHelpText 6: [ OK ] CommandLineHelpWriterTest.HandlesHelpText (0 ms) -6: [----------] 6 tests from CommandLineHelpWriterTest (2 ms total) +6: [----------] 6 tests from CommandLineHelpWriterTest (1 ms total) 6: 6: [----------] 6 tests from CommandLineModuleManagerTest 6: [ RUN ] CommandLineModuleManagerTest.RunsModule -6: [ OK ] CommandLineModuleManagerTest.RunsModule (0 ms) +6: [ OK ] CommandLineModuleManagerTest.RunsModule (1 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelp -6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelp (1 ms) +6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelp (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule -6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule (0 ms) +6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule (1 ms) 6: [ RUN ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames 6: [ OK ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames (0 ms) -6: [----------] 6 tests from CommandLineModuleManagerTest (1 ms total) +6: [----------] 6 tests from CommandLineModuleManagerTest (2 ms total) 6: 6: [----------] 13 tests from CommandLineParserTest 6: [ RUN ] CommandLineParserTest.HandlesSingleValues -6: [ OK ] CommandLineParserTest.HandlesSingleValues (1 ms) +6: [ OK ] CommandLineParserTest.HandlesSingleValues (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesBooleanWithoutArgument 6: [ OK ] CommandLineParserTest.HandlesBooleanWithoutArgument (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesBooleanAsNoWithoutArgument @@ -62325,7 +62357,7 @@ 6: [ OK ] CommandLineParserTest.CanAllowPositionalArguments (0 ms) 6: [ RUN ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions 6: [ OK ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions (0 ms) -6: [----------] 13 tests from CommandLineParserTest (2 ms total) +6: [----------] 13 tests from CommandLineParserTest (1 ms total) 6: 6: [----------] 6 tests from CommandLineProgramContextTest 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithAbsolutePath @@ -62352,7 +62384,7 @@ 6: [ RUN ] ParseCommonArgsTest.ParsesStringArgs 6: [ OK ] ParseCommonArgsTest.ParsesStringArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesBooleanArgs -6: [ OK ] ParseCommonArgsTest.ParsesBooleanArgs (0 ms) +6: [ OK ] ParseCommonArgsTest.ParsesBooleanArgs (1 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesVectorArgs 6: [ OK ] ParseCommonArgsTest.ParsesVectorArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesTimeArgs @@ -62376,32 +62408,32 @@ 6: [ RUN ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified 6: [ OK ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified (0 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesCompressedFiles -6: [ OK ] ParseCommonArgsTest.HandlesCompressedFiles (0 ms) +6: [ OK ] ParseCommonArgsTest.HandlesCompressedFiles (1 ms) 6: [ RUN ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension 6: [ OK ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension (0 ms) 6: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFile 6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (1 ms) 6: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName -6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (1 ms) +6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (0 ms) 6: [ RUN ] ParseCommonArgsTest.CanKeepUnknownArgs 6: [ OK ] ParseCommonArgsTest.CanKeepUnknownArgs (0 ms) -6: [----------] 21 tests from ParseCommonArgsTest (4 ms total) +6: [----------] 21 tests from ParseCommonArgsTest (3 ms total) 6: 6: [----------] Global test environment tear-down -6: [==========] 55 tests from 6 test cases ran. (12 ms total) +6: [==========] 55 tests from 6 test cases ran. (10 ms total) 6: [ PASSED ] 55 tests. - 6/27 Test #6: CommandLineUnitTests ............. Passed 0.30 sec + 6/27 Test #6: CommandLineUnitTests ............. Passed 0.28 sec test 7 Start 7: DomDecTests 7: Test command: /build/gromacs-2019.1/build/openmpi/bin/domdec-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/DomDecTests.xml" 7: Test timeout computed to be: 30 7: -------------------------------------------------------------------------- -7: [[23914,1],0]: A high-performance Open MPI point-to-point messaging module +7: [[35124,1],0]: A high-performance Open MPI point-to-point messaging module 7: was unable to find any relevant network interfaces: 7: 7: Module: OpenFabrics (openib) -7: Host: codethink13-arm64 +7: Host: i-capture-the-hostname 7: 7: Another transport will be used instead, although this may result in 7: lower performance. @@ -62438,18 +62470,18 @@ 7: [----------] Global test environment tear-down 7: [==========] 9 tests from 2 test cases ran. (0 ms total) 7: [ PASSED ] 9 tests. - 7/27 Test #7: DomDecTests ...................... Passed 0.29 sec + 7/27 Test #7: DomDecTests ...................... Passed 0.25 sec test 8 Start 8: EwaldUnitTests 8: Test command: /build/gromacs-2019.1/build/openmpi/bin/ewald-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/EwaldUnitTests.xml" 8: Test timeout computed to be: 30 8: -------------------------------------------------------------------------- -8: [[23909,1],0]: A high-performance Open MPI point-to-point messaging module +8: [[35257,1],0]: A high-performance Open MPI point-to-point messaging module 8: was unable to find any relevant network interfaces: 8: 8: Module: OpenFabrics (openib) -8: Host: codethink13-arm64 +8: Host: i-capture-the-hostname 8: 8: Another transport will be used instead, although this may result in 8: lower performance. @@ -62461,36 +62493,36 @@ 8: [----------] Global test environment set-up. 8: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest 8: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 -8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 (1 ms) +8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 (0 ms) 8: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 (0 ms) 8: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 (0 ms) 8: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 -8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (3 ms) +8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (4 ms) 8: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 -8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 (0 ms) -8: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (5 ms total) +8: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 (2 ms) +8: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (6 ms total) 8: 8: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (5 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (4 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (5 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (3 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 @@ -62506,74 +62538,74 @@ 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (3 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (3 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (3 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (3 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (2 ms) -8: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (58 ms total) +8: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (64 ms total) 8: 8: [----------] 144 tests from SaneInput/PmeGatherTest 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/0 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/0 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/0 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/1 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/1 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/1 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/2 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/2 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/3 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/3 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/4 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/4 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/4 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/5 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/5 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/5 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/6 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/6 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/6 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/7 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/7 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/7 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/8 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/8 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/8 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/9 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/9 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/9 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/10 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/11 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/12 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/13 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/13 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/13 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/14 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/14 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/15 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/15 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/16 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/16 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/16 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/17 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/17 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/17 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/18 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/18 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/18 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/19 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/20 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/20 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/21 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/21 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/21 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/22 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/23 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/24 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/25 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/25 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/26 @@ -62587,59 +62619,59 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/30 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/30 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/31 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/31 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/31 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/32 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/32 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/32 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/33 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/33 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/33 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/34 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/34 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/34 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/35 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/35 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/36 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/37 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/37 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/38 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/38 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/39 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/40 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/40 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/40 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/41 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/41 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/41 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/42 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/42 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/42 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/43 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/43 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/43 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/44 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/44 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/44 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/45 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/45 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/46 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/46 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/46 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/47 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/47 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/47 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/48 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/48 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/48 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/49 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/49 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/49 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/50 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/50 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/50 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/51 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/51 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/51 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/52 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/52 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/53 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/53 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/54 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/54 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/54 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/55 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/55 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/55 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/56 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/56 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/56 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/57 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/57 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/57 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/58 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/58 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/59 @@ -62649,33 +62681,33 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/61 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/61 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/62 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/62 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/62 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/63 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/63 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/63 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/64 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/64 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/64 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/65 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/66 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/66 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/66 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/67 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/68 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/69 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/70 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/70 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/70 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/71 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/72 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/72 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/72 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/73 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/73 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/73 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/74 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/74 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/74 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/75 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/75 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/75 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/76 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/76 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/77 @@ -62683,63 +62715,63 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/78 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/78 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/79 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/79 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/79 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/80 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/81 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/82 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/82 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/82 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/83 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/83 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/83 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/84 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/85 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/85 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/85 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/86 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/86 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/86 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/87 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/87 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/87 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/88 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/88 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/88 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/89 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/90 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/91 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/91 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/92 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/92 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/93 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/93 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/93 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/94 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/94 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/94 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/95 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/95 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/95 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/96 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/96 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/96 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/97 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/97 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/97 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/98 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/98 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/98 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/99 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/100 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/101 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/102 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/103 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/104 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (5 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/105 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/105 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/105 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/106 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/106 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/106 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/107 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/107 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/107 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/108 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/109 @@ -62753,15 +62785,15 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/113 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/113 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/114 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/114 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/114 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/115 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/115 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/116 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/116 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/116 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/117 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/117 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/117 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/118 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/118 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/118 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/119 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/119 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/120 @@ -62771,25 +62803,25 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/122 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/122 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/123 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/123 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/123 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/124 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/124 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/124 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/125 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/125 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/125 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/126 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/126 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/127 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/127 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/127 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/128 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/128 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/128 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/129 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/130 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/130 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/131 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/131 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/132 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/132 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/132 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/133 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/133 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/134 @@ -62797,9 +62829,9 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/135 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/135 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/136 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/136 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/136 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/137 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/137 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/137 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/138 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/138 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/139 @@ -62812,11 +62844,11 @@ 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/143 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (0 ms) -8: [----------] 144 tests from SaneInput/PmeGatherTest (75 ms total) +8: [----------] 144 tests from SaneInput/PmeGatherTest (76 ms total) 8: 8: [----------] 16 tests from SaneInput/PmeSolveTest 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/0 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (2 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (3 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/1 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/2 @@ -62832,26 +62864,26 @@ 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/7 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/7 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/8 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (1 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/9 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (1 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/10 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (2 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/11 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (1 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (3 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/12 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/12 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/13 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/13 (2 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/13 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/14 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (1 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (0 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/15 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (1 ms) -8: [----------] 16 tests from SaneInput/PmeSolveTest (25 ms total) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (2 ms) +8: [----------] 16 tests from SaneInput/PmeSolveTest (28 ms total) 8: 8: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 -8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (2 ms) +8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 @@ -62861,12 +62893,12 @@ 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 -8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (1 ms) +8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (2 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 -8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (1 ms) +8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (0 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 -8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (1 ms) -8: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (9 ms total) +8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (2 ms) +8: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (10 ms total) 8: 8: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 @@ -62874,24 +62906,24 @@ 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (2 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 (1 ms) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 (2 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 (2 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (2 ms) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (1 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (1 ms) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (2 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (2 ms) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (1 ms) -8: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (13 ms total) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (2 ms) +8: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (15 ms total) 8: 8: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 (2 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (2 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 (2 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 @@ -62903,63 +62935,63 @@ 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (2 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (2 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (2 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (2 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 (0 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (2 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (1 ms) -8: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (22 ms total) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (2 ms) +8: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (24 ms total) 8: 8: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (3 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (4 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 (2 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 (1 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (2 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (3 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (2 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (3 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 (2 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (1 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (1 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (2 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (3 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (3 ms) -8: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (25 ms total) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (2 ms) +8: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (27 ms total) 8: 8: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (2 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (3 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (3 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 (3 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 @@ -62967,57 +62999,57 @@ 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (2 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (3 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (2 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (3 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (3 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (3 ms) -8: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (28 ms total) +8: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (33 ms total) 8: 8: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (4 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (4 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (5 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (6 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (7 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (7 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (9 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (10 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (10 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (4 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (5 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (5 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (6 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (7 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (7 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (8 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (9 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (9 ms) -8: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (87 ms total) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (10 ms) +8: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (96 ms total) 8: 8: [----------] Global test environment tear-down -8: [==========] 257 tests from 10 test cases ran. (434 ms total) +8: [==========] 257 tests from 10 test cases ran. (439 ms total) 8: [ PASSED ] 257 tests. - 8/27 Test #8: EwaldUnitTests ................... Passed 0.76 sec + 8/27 Test #8: EwaldUnitTests ................... Passed 0.74 sec test 9 Start 9: FFTUnitTests 9: Test command: /build/gromacs-2019.1/build/openmpi/bin/fft-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/FFTUnitTests.xml" 9: Test timeout computed to be: 30 9: -------------------------------------------------------------------------- -9: [[23927,1],0]: A high-performance Open MPI point-to-point messaging module +9: [[35690,1],0]: A high-performance Open MPI point-to-point messaging module 9: was unable to find any relevant network interfaces: 9: 9: Module: OpenFabrics (openib) -9: Host: codethink13-arm64 +9: Host: i-capture-the-hostname 9: 9: Another transport will be used instead, although this may result in 9: lower performance. @@ -63031,13 +63063,13 @@ 9: [ RUN ] ManyFFTTest.Complex1DLength48Multi5Test 9: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (9 ms) 9: [ RUN ] ManyFFTTest.Real1DLength48Multi5Test -9: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (14 ms) -9: [----------] 2 tests from ManyFFTTest (24 ms total) +9: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (18 ms) +9: [----------] 2 tests from ManyFFTTest (30 ms total) 9: 9: [----------] 1 test from FFTTest 9: [ RUN ] FFTTest.Real2DLength18_15Test -9: [ OK ] FFTTest.Real2DLength18_15Test (9 ms) -9: [----------] 1 test from FFTTest (10 ms total) +9: [ OK ] FFTTest.Real2DLength18_15Test (6 ms) +9: [----------] 1 test from FFTTest (6 ms total) 9: 9: [----------] 1 test from FFFTest3D 9: [ RUN ] FFFTest3D.Real5_6_9 @@ -63052,36 +63084,36 @@ 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/2 9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (1 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/3 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (3 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (4 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/4 9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (2 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/0 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (1 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (0 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/1 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (1 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (0 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/2 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/2 (0 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/2 (1 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/3 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (12 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (8 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/4 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (16 ms) -9: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (40 ms total) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (11 ms) +9: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (33 ms total) 9: 9: [----------] Global test environment tear-down -9: [==========] 14 tests from 4 test cases ran. (78 ms total) +9: [==========] 14 tests from 4 test cases ran. (73 ms total) 9: [ PASSED ] 14 tests. - 9/27 Test #9: FFTUnitTests ..................... Passed 0.36 sec + 9/27 Test #9: FFTUnitTests ..................... Passed 0.35 sec test 10 Start 10: GpuUtilsUnitTests 10: Test command: /build/gromacs-2019.1/build/openmpi/bin/gpu_utils-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/GpuUtilsUnitTests.xml" 10: Test timeout computed to be: 30 10: -------------------------------------------------------------------------- -10: [[23182,1],0]: A high-performance Open MPI point-to-point messaging module +10: [[35737,1],0]: A high-performance Open MPI point-to-point messaging module 10: was unable to find any relevant network interfaces: 10: 10: Module: OpenFabrics (openib) -10: Host: codethink13-arm64 +10: Host: i-capture-the-hostname 10: 10: Another transport will be used instead, although this may result in 10: lower performance. @@ -63093,10 +63125,10 @@ 10: [----------] Global test environment set-up. 10: [----------] 2 tests from HostAllocatorTest/0, where TypeParam = int 10: [ RUN ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks -10: [ OK ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks (1 ms) +10: [ OK ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks (0 ms) 10: [ RUN ] HostAllocatorTest/0.StatefulAllocatorUsesMemory 10: [ OK ] HostAllocatorTest/0.StatefulAllocatorUsesMemory (0 ms) -10: [----------] 2 tests from HostAllocatorTest/0 (1 ms total) +10: [----------] 2 tests from HostAllocatorTest/0 (0 ms total) 10: 10: [----------] 2 tests from HostAllocatorTest/1, where TypeParam = float 10: [ RUN ] HostAllocatorTest/1.EmptyMemoryAlwaysWorks @@ -63126,7 +63158,7 @@ 10: [ OK ] HostAllocatorTestCopyable/0.TransfersWithoutPinningWork (0 ms) 10: [ RUN ] HostAllocatorTestCopyable/0.FillInputAlsoWorksAfterCallingReserve 10: [ OK ] HostAllocatorTestCopyable/0.FillInputAlsoWorksAfterCallingReserve (0 ms) -10: [----------] 3 tests from HostAllocatorTestCopyable/0 (0 ms total) +10: [----------] 3 tests from HostAllocatorTestCopyable/0 (1 ms total) 10: 10: [----------] 3 tests from HostAllocatorTestCopyable/1, where TypeParam = float 10: [ RUN ] HostAllocatorTestCopyable/1.VectorsWithDefaultHostAllocatorAlwaysWorks @@ -63228,12 +63260,12 @@ 10: [ RUN ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment 10: [ OK ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment -10: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (1 ms) +10: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment 10: [ OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/0.Move 10: [ OK ] AllocatorTest/0.Move (0 ms) -10: [----------] 4 tests from AllocatorTest/0 (1 ms total) +10: [----------] 4 tests from AllocatorTest/0 (0 ms total) 10: 10: [----------] 4 tests from AllocatorTest/1, where TypeParam = gmx::Allocator 10: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment @@ -63271,18 +63303,18 @@ 10: [----------] Global test environment tear-down 10: [==========] 60 tests from 19 test cases ran. (2 ms total) 10: [ PASSED ] 60 tests. -10/27 Test #10: GpuUtilsUnitTests ................ Passed 0.26 sec +10/27 Test #10: GpuUtilsUnitTests ................ Passed 0.29 sec test 11 Start 11: HardwareUnitTests 11: Test command: /build/gromacs-2019.1/build/openmpi/bin/hardware-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/HardwareUnitTests.xml" 11: Test timeout computed to be: 30 11: -------------------------------------------------------------------------- -11: [[23195,1],0]: A high-performance Open MPI point-to-point messaging module +11: [[35749,1],0]: A high-performance Open MPI point-to-point messaging module 11: was unable to find any relevant network interfaces: 11: 11: Module: OpenFabrics (openib) -11: Host: codethink13-arm64 +11: Host: i-capture-the-hostname 11: 11: Another transport will be used instead, although this may result in 11: lower performance. @@ -63294,17 +63326,17 @@ 11: [----------] Global test environment set-up. 11: [----------] 4 tests from HardwareTopologyTest 11: [ RUN ] HardwareTopologyTest.Execute -11: [ OK ] HardwareTopologyTest.Execute (29 ms) +11: [ OK ] HardwareTopologyTest.Execute (47 ms) 11: [ RUN ] HardwareTopologyTest.HwlocExecute -11: [ OK ] HardwareTopologyTest.HwlocExecute (28 ms) +11: [ OK ] HardwareTopologyTest.HwlocExecute (24 ms) 11: [ RUN ] HardwareTopologyTest.ProcessorSelfconsistency 11: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (28 ms) 11: [ RUN ] HardwareTopologyTest.NumaCacheSelfconsistency -11: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (29 ms) -11: [----------] 4 tests from HardwareTopologyTest (114 ms total) +11: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (28 ms) +11: [----------] 4 tests from HardwareTopologyTest (127 ms total) 11: 11: [----------] Global test environment tear-down -11: [==========] 4 tests from 1 test case ran. (114 ms total) +11: [==========] 4 tests from 1 test case ran. (127 ms total) 11: [ PASSED ] 4 tests. 11/27 Test #11: HardwareUnitTests ................ Passed 0.40 sec test 12 @@ -63313,11 +63345,11 @@ 12: Test command: /build/gromacs-2019.1/build/openmpi/bin/math-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/MathUnitTests.xml" 12: Test timeout computed to be: 30 12: -------------------------------------------------------------------------- -12: [[23188,1],0]: A high-performance Open MPI point-to-point messaging module +12: [[35758,1],0]: A high-performance Open MPI point-to-point messaging module 12: was unable to find any relevant network interfaces: 12: 12: Module: OpenFabrics (openib) -12: Host: codethink13-arm64 +12: Host: i-capture-the-hostname 12: 12: Another transport will be used instead, although this may result in 12: lower performance. @@ -63375,11 +63407,11 @@ 12: 12: [----------] 21 tests from FunctionTest 12: [ RUN ] FunctionTest.StaticLog2 -12: [ OK ] FunctionTest.StaticLog2 (1 ms) +12: [ OK ] FunctionTest.StaticLog2 (0 ms) 12: [ RUN ] FunctionTest.Log2I32Bit 12: [ OK ] FunctionTest.Log2I32Bit (0 ms) 12: [ RUN ] FunctionTest.Log2I64Bit -12: [ OK ] FunctionTest.Log2I64Bit (0 ms) +12: [ OK ] FunctionTest.Log2I64Bit (1 ms) 12: [ RUN ] FunctionTest.GreatestCommonDivisor 12: [ OK ] FunctionTest.GreatestCommonDivisor (0 ms) 12: [ RUN ] FunctionTest.InvsqrtFloat @@ -63391,7 +63423,7 @@ 12: [ RUN ] FunctionTest.InvcbrtFloat 12: [ OK ] FunctionTest.InvcbrtFloat (0 ms) 12: [ RUN ] FunctionTest.InvcbrtDouble -12: [ OK ] FunctionTest.InvcbrtDouble (0 ms) +12: [ OK ] FunctionTest.InvcbrtDouble (1 ms) 12: [ RUN ] FunctionTest.InvcbrtInteger 12: [ OK ] FunctionTest.InvcbrtInteger (0 ms) 12: [ RUN ] FunctionTest.SixthrootFloat @@ -63403,7 +63435,7 @@ 12: [ RUN ] FunctionTest.InvsixthrootFloat 12: [ OK ] FunctionTest.InvsixthrootFloat (0 ms) 12: [ RUN ] FunctionTest.InvsixthrootDouble -12: [ OK ] FunctionTest.InvsixthrootDouble (0 ms) +12: [ OK ] FunctionTest.InvsixthrootDouble (1 ms) 12: [ RUN ] FunctionTest.InvsixthrootInteger 12: [ OK ] FunctionTest.InvsixthrootInteger (0 ms) 12: [ RUN ] FunctionTest.Powers @@ -63411,11 +63443,11 @@ 12: [ RUN ] FunctionTest.ErfInvFloat 12: [ OK ] FunctionTest.ErfInvFloat (0 ms) 12: [ RUN ] FunctionTest.ErfInvDouble -12: [ OK ] FunctionTest.ErfInvDouble (1 ms) +12: [ OK ] FunctionTest.ErfInvDouble (0 ms) 12: [ RUN ] FunctionTest.ErfAndErfInvAreInversesFloat 12: [ OK ] FunctionTest.ErfAndErfInvAreInversesFloat (0 ms) 12: [ RUN ] FunctionTest.ErfAndErfInvAreInversesDouble -12: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (0 ms) +12: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (1 ms) 12: [----------] 21 tests from FunctionTest (4 ms total) 12: 12: [----------] 2 tests from InvertMatrixTest @@ -63441,7 +63473,7 @@ 12: [ OK ] PaddedVectorTest/0.CanMoveAssign (0 ms) 12: [ RUN ] PaddedVectorTest/0.CanSwap 12: [ OK ] PaddedVectorTest/0.CanSwap (0 ms) -12: [----------] 4 tests from PaddedVectorTest/0 (1 ms total) +12: [----------] 4 tests from PaddedVectorTest/0 (0 ms total) 12: 12: [----------] 4 tests from PaddedVectorTest/1, where TypeParam = std::allocator 12: [ RUN ] PaddedVectorTest/1.ConstructsResizesAndReserves @@ -63496,7 +63528,7 @@ 12: [ OK ] PaddedVectorTest/5.CanMoveAssign (0 ms) 12: [ RUN ] PaddedVectorTest/5.CanSwap 12: [ OK ] PaddedVectorTest/5.CanSwap (0 ms) -12: [----------] 4 tests from PaddedVectorTest/5 (0 ms total) +12: [----------] 4 tests from PaddedVectorTest/5 (1 ms total) 12: 12: [----------] 4 tests from PaddedVectorTest/6, where TypeParam = gmx::Allocator 12: [ RUN ] PaddedVectorTest/6.ConstructsResizesAndReserves @@ -63540,7 +63572,7 @@ 12: [ OK ] PaddedVectorTest/9.CanMoveAssign (0 ms) 12: [ RUN ] PaddedVectorTest/9.CanSwap 12: [ OK ] PaddedVectorTest/9.CanSwap (0 ms) -12: [----------] 4 tests from PaddedVectorTest/9 (1 ms total) +12: [----------] 4 tests from PaddedVectorTest/9 (0 ms total) 12: 12: [----------] 33 tests from RVecTest 12: [ RUN ] RVecTest.CanBeStoredInVector @@ -63612,20 +63644,20 @@ 12: [----------] 33 tests from RVecTest (0 ms total) 12: 12: [----------] Global test environment tear-down -12: [==========] 112 tests from 20 test cases ran. (6 ms total) +12: [==========] 112 tests from 20 test cases ran. (5 ms total) 12: [ PASSED ] 112 tests. -12/27 Test #12: MathUnitTests .................... Passed 0.33 sec +12/27 Test #12: MathUnitTests .................... Passed 0.28 sec test 13 Start 13: MdrunUtilityUnitTests 13: Test command: /build/gromacs-2019.1/build/openmpi/bin/mdrunutility-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/MdrunUtilityUnitTests.xml" 13: Test timeout computed to be: 30 13: -------------------------------------------------------------------------- -13: [[23215,1],0]: A high-performance Open MPI point-to-point messaging module +13: [[35414,1],0]: A high-performance Open MPI point-to-point messaging module 13: was unable to find any relevant network interfaces: 13: 13: Module: OpenFabrics (openib) -13: Host: codethink13-arm64 +13: Host: i-capture-the-hostname 13: 13: Another transport will be used instead, although this may result in 13: lower performance. @@ -63637,45 +63669,45 @@ 13: [----------] Global test environment set-up. 13: [----------] 17 tests from ThreadAffinityTest 13: [ RUN ] ThreadAffinityTest.DoesNothingWhenDisabled -13: [ OK ] ThreadAffinityTest.DoesNothingWhenDisabled (1 ms) +13: [ OK ] ThreadAffinityTest.DoesNothingWhenDisabled (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWhenNotSupported 13: [ OK ] ThreadAffinityTest.DoesNothingWhenNotSupported (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads 13: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads -13: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads (0 ms) +13: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads (1 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads -13: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads (1 ms) +13: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithUnknownHardware 13: [ OK ] ThreadAffinityTest.DoesNothingWithUnknownHardware (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithTooManyThreads 13: [ OK ] ThreadAffinityTest.DoesNothingWithTooManyThreads (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeOffset -13: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeOffset (0 ms) +13: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeOffset (1 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeStride -13: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeStride (1 ms) +13: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeStride (0 ms) 13: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithAuto 13: [ OK ] ThreadAffinityTest.PinsSingleThreadWithAuto (0 ms) 13: [ RUN ] ThreadAffinityTest.PinsSingleThreadWhenForced -13: [ OK ] ThreadAffinityTest.PinsSingleThreadWhenForced (0 ms) +13: [ OK ] ThreadAffinityTest.PinsSingleThreadWhenForced (1 ms) 13: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced -13: [ OK ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced (1 ms) +13: [ OK ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced (0 ms) 13: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread 13: NOTE: Affinity setting failed. -13: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread (0 ms) +13: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread (1 ms) 13: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithAuto -13: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (1 ms) +13: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (0 ms) 13: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced -13: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (0 ms) +13: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (1 ms) 13: [ RUN ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads 13: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (0 ms) 13: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing 13: NOTE: Affinity setting for 1/2 threads failed. 13: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (1 ms) -13: [----------] 17 tests from ThreadAffinityTest (7 ms total) +13: [----------] 17 tests from ThreadAffinityTest (6 ms total) 13: 13: [----------] Global test environment tear-down -13: [==========] 17 tests from 1 test case ran. (7 ms total) +13: [==========] 17 tests from 1 test case ran. (6 ms total) 13: [ PASSED ] 17 tests. 13/27 Test #13: MdrunUtilityUnitTests ............ Passed 0.30 sec test 14 @@ -63684,11 +63716,11 @@ 14: Test command: /usr/bin/mpiexec.openmpi "-np" "4" "/build/gromacs-2019.1/build/openmpi/bin/mdrunutility-mpi-test" "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/MdrunUtilityMpiUnitTests.xml" 14: Test timeout computed to be: 30 14: -------------------------------------------------------------------------- -14: [[23206,1],0]: A high-performance Open MPI point-to-point messaging module +14: [[35422,1],0]: A high-performance Open MPI point-to-point messaging module 14: was unable to find any relevant network interfaces: 14: 14: Module: OpenFabrics (openib) -14: Host: codethink13-arm64 +14: Host: i-capture-the-hostname 14: 14: Another transport will be used instead, although this may result in 14: lower performance. @@ -63700,53 +63732,53 @@ 14: [----------] Global test environment set-up. 14: [----------] 6 tests from ThreadAffinityMultiRankTest 14: [ RUN ] ThreadAffinityMultiRankTest.PinsWholeNode -14: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (76 ms) +14: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (1 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride -14: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (57 ms) +14: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (1 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.PinsTwoNodes -14: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (73 ms) +14: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (40 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled -14: [ OK ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled (61 ms) +14: [ OK ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled (0 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto -14: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (65 ms) +14: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (12 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce -14: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (65 ms) -14: [----------] 6 tests from ThreadAffinityMultiRankTest (488 ms total) +14: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (1 ms) +14: [----------] 6 tests from ThreadAffinityMultiRankTest (64 ms total) 14: 14: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly 14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (1 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (1 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (0 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster 14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (1 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (25 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (8 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (1 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (12 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (1 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (0 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly 14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (0 ms) -14: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (31 ms total) +14: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (33 ms total) 14: 14: [----------] Global test environment tear-down -14: [==========] 13 tests from 2 test cases ran. (519 ms total) +14: [==========] 13 tests from 2 test cases ran. (97 ms total) 14: [ PASSED ] 13 tests. -14: [codethink13-arm64:31791] 3 more processes have sent help message help-mpi-btl-base.txt / btl:no-nics -14: [codethink13-arm64:31791] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages -14/27 Test #14: MdrunUtilityMpiUnitTests ......... Passed 1.08 sec +14: [i-capture-the-hostname:01807] 3 more processes have sent help message help-mpi-btl-base.txt / btl:no-nics +14: [i-capture-the-hostname:01807] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages +14/27 Test #14: MdrunUtilityMpiUnitTests ......... Passed 0.58 sec test 15 Start 15: OnlineHelpUnitTests 15: Test command: /build/gromacs-2019.1/build/openmpi/bin/onlinehelp-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/OnlineHelpUnitTests.xml" 15: Test timeout computed to be: 30 15: -------------------------------------------------------------------------- -15: [[23240,1],0]: A high-performance Open MPI point-to-point messaging module +15: [[35440,1],0]: A high-performance Open MPI point-to-point messaging module 15: was unable to find any relevant network interfaces: 15: 15: Module: OpenFabrics (openib) -15: Host: codethink13-arm64 +15: Host: i-capture-the-hostname 15: 15: Another transport will be used instead, although this may result in 15: lower performance. @@ -63782,9 +63814,9 @@ 15: 15: [----------] 2 tests from HelpTopicFormattingTest 15: [ RUN ] HelpTopicFormattingTest.FormatsSimpleTopic -15: [ OK ] HelpTopicFormattingTest.FormatsSimpleTopic (1 ms) +15: [ OK ] HelpTopicFormattingTest.FormatsSimpleTopic (0 ms) 15: [ RUN ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics -15: [ OK ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics (0 ms) +15: [ OK ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics (1 ms) 15: [----------] 2 tests from HelpTopicFormattingTest (1 ms total) 15: 15: [----------] 11 tests from HelpWriterContextTest @@ -63795,7 +63827,7 @@ 15: [ RUN ] HelpWriterContextTest.CleansUpExtraWhitespace 15: [ OK ] HelpWriterContextTest.CleansUpExtraWhitespace (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsLiteralText -15: [ OK ] HelpWriterContextTest.FormatsLiteralText (1 ms) +15: [ OK ] HelpWriterContextTest.FormatsLiteralText (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsLiteralTextAtBeginning 15: [ OK ] HelpWriterContextTest.FormatsLiteralTextAtBeginning (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsLiteralTextWithIndentation @@ -63803,11 +63835,11 @@ 15: [ RUN ] HelpWriterContextTest.FormatsBulletList 15: [ OK ] HelpWriterContextTest.FormatsBulletList (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsEnumeratedList -15: [ OK ] HelpWriterContextTest.FormatsEnumeratedList (0 ms) +15: [ OK ] HelpWriterContextTest.FormatsEnumeratedList (1 ms) 15: [ RUN ] HelpWriterContextTest.FormatsSimpleTable 15: [ OK ] HelpWriterContextTest.FormatsSimpleTable (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsGridTable -15: [ OK ] HelpWriterContextTest.FormatsGridTable (1 ms) +15: [ OK ] HelpWriterContextTest.FormatsGridTable (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsTitles 15: [ OK ] HelpWriterContextTest.FormatsTitles (0 ms) 15: [----------] 11 tests from HelpWriterContextTest (2 ms total) @@ -63815,18 +63847,18 @@ 15: [----------] Global test environment tear-down 15: [==========] 22 tests from 4 test cases ran. (4 ms total) 15: [ PASSED ] 22 tests. -15/27 Test #15: OnlineHelpUnitTests .............. Passed 0.27 sec +15/27 Test #15: OnlineHelpUnitTests .............. Passed 0.25 sec test 16 Start 16: OptionsUnitTests 16: Test command: /build/gromacs-2019.1/build/openmpi/bin/options-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/OptionsUnitTests.xml" 16: Test timeout computed to be: 30 16: -------------------------------------------------------------------------- -16: [[23232,1],0]: A high-performance Open MPI point-to-point messaging module +16: [[35453,1],0]: A high-performance Open MPI point-to-point messaging module 16: was unable to find any relevant network interfaces: 16: 16: Module: OpenFabrics (openib) -16: Host: codethink13-arm64 +16: Host: i-capture-the-hostname 16: 16: Another transport will be used instead, although this may result in 16: lower performance. @@ -63865,7 +63897,7 @@ 16: [ RUN ] FileNameOptionTest.GivesErrorOnUnknownFileSuffix 16: [ OK ] FileNameOptionTest.GivesErrorOnUnknownFileSuffix (0 ms) 16: [ RUN ] FileNameOptionTest.GivesErrorOnInvalidFileSuffix -16: [ OK ] FileNameOptionTest.GivesErrorOnInvalidFileSuffix (0 ms) +16: [ OK ] FileNameOptionTest.GivesErrorOnInvalidFileSuffix (1 ms) 16: [----------] 8 tests from FileNameOptionTest (1 ms total) 16: 16: [----------] 15 tests from FileNameOptionManagerTest @@ -63874,7 +63906,7 @@ 16: [ RUN ] FileNameOptionManagerTest.AddsMissingCustomDefaultExtension 16: [ OK ] FileNameOptionManagerTest.AddsMissingCustomDefaultExtension (0 ms) 16: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile -16: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile (1 ms) +16: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile (0 ms) 16: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile 16: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile (0 ms) 16: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingDefaultInputFile @@ -63899,7 +63931,7 @@ 16: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalFromDefaultNameOptionBasedOnExistingFile (0 ms) 16: [ RUN ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking 16: [ OK ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking (0 ms) -16: [----------] 15 tests from FileNameOptionManagerTest (1 ms total) +16: [----------] 15 tests from FileNameOptionManagerTest (0 ms total) 16: 16: [----------] 1 test from OptionsTest 16: [ RUN ] OptionsTest.FailsOnNonsafeStorage @@ -63908,24 +63940,24 @@ 16: 16: [----------] 9 tests from OptionsAssignerTest 16: [ RUN ] OptionsAssignerTest.HandlesMissingRequiredParameter -16: [ OK ] OptionsAssignerTest.HandlesMissingRequiredParameter (0 ms) +16: [ OK ] OptionsAssignerTest.HandlesMissingRequiredParameter (1 ms) 16: [ RUN ] OptionsAssignerTest.HandlesRequiredParameterWithDefaultValue 16: [ OK ] OptionsAssignerTest.HandlesRequiredParameterWithDefaultValue (0 ms) 16: [ RUN ] OptionsAssignerTest.HandlesInvalidMultipleParameter -16: [ OK ] OptionsAssignerTest.HandlesInvalidMultipleParameter (1 ms) +16: [ OK ] OptionsAssignerTest.HandlesInvalidMultipleParameter (0 ms) 16: [ RUN ] OptionsAssignerTest.HandlesMultipleParameter 16: [ OK ] OptionsAssignerTest.HandlesMultipleParameter (0 ms) 16: [ RUN ] OptionsAssignerTest.HandlesMissingValue 16: [ OK ] OptionsAssignerTest.HandlesMissingValue (0 ms) 16: [ RUN ] OptionsAssignerTest.HandlesExtraValue -16: [ OK ] OptionsAssignerTest.HandlesExtraValue (1 ms) +16: [ OK ] OptionsAssignerTest.HandlesExtraValue (0 ms) 16: [ RUN ] OptionsAssignerTest.HandlesGroups 16: [ OK ] OptionsAssignerTest.HandlesGroups (0 ms) 16: [ RUN ] OptionsAssignerTest.HandlesSections 16: [ OK ] OptionsAssignerTest.HandlesSections (0 ms) 16: [ RUN ] OptionsAssignerTest.HandlesMultipleSources 16: [ OK ] OptionsAssignerTest.HandlesMultipleSources (0 ms) -16: [----------] 9 tests from OptionsAssignerTest (2 ms total) +16: [----------] 9 tests from OptionsAssignerTest (1 ms total) 16: 16: [----------] 4 tests from OptionsAssignerBooleanTest 16: [ RUN ] OptionsAssignerBooleanTest.StoresYesValue @@ -63965,7 +63997,7 @@ 16: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue (0 ms) 16: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment 16: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment (0 ms) -16: [----------] 13 tests from OptionsAssignerIntegerTest (0 ms total) +16: [----------] 13 tests from OptionsAssignerIntegerTest (1 ms total) 16: 16: [----------] 5 tests from OptionsAssignerDoubleTest 16: [ RUN ] OptionsAssignerDoubleTest.StoresSingleValue @@ -63973,12 +64005,12 @@ 16: [ RUN ] OptionsAssignerDoubleTest.StoresValueFromFloat 16: [ OK ] OptionsAssignerDoubleTest.StoresValueFromFloat (0 ms) 16: [ RUN ] OptionsAssignerDoubleTest.HandlesEmptyValue -16: [ OK ] OptionsAssignerDoubleTest.HandlesEmptyValue (1 ms) +16: [ OK ] OptionsAssignerDoubleTest.HandlesEmptyValue (0 ms) 16: [ RUN ] OptionsAssignerDoubleTest.HandlesPreSetScaleValue 16: [ OK ] OptionsAssignerDoubleTest.HandlesPreSetScaleValue (0 ms) 16: [ RUN ] OptionsAssignerDoubleTest.HandlesPostSetScaleValue 16: [ OK ] OptionsAssignerDoubleTest.HandlesPostSetScaleValue (0 ms) -16: [----------] 5 tests from OptionsAssignerDoubleTest (1 ms total) +16: [----------] 5 tests from OptionsAssignerDoubleTest (0 ms total) 16: 16: [----------] 9 tests from OptionsAssignerStringTest 16: [ RUN ] OptionsAssignerStringTest.StoresSingleValue @@ -63990,7 +64022,7 @@ 16: [ RUN ] OptionsAssignerStringTest.HandlesIncorrectEnumValue 16: [ OK ] OptionsAssignerStringTest.HandlesIncorrectEnumValue (0 ms) 16: [ RUN ] OptionsAssignerStringTest.CompletesEnumValue -16: [ OK ] OptionsAssignerStringTest.CompletesEnumValue (1 ms) +16: [ OK ] OptionsAssignerStringTest.CompletesEnumValue (0 ms) 16: [ RUN ] OptionsAssignerStringTest.HandlesEnumWithNoValue 16: [ OK ] OptionsAssignerStringTest.HandlesEnumWithNoValue (0 ms) 16: [ RUN ] OptionsAssignerStringTest.HandlesEnumDefaultValue @@ -63999,7 +64031,7 @@ 16: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVariable (0 ms) 16: [ RUN ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVector 16: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVector (0 ms) -16: [----------] 9 tests from OptionsAssignerStringTest (1 ms total) +16: [----------] 9 tests from OptionsAssignerStringTest (0 ms total) 16: 16: [----------] 6 tests from OptionsAssignerEnumTest 16: [ RUN ] OptionsAssignerEnumTest.StoresSingleValue @@ -64030,10 +64062,10 @@ 16: [ RUN ] RepeatingOptionSectionTest.HandlesUnsetOptionWithImplicitDefault 16: [ OK ] RepeatingOptionSectionTest.HandlesUnsetOptionWithImplicitDefault (0 ms) 16: [ RUN ] RepeatingOptionSectionTest.HandlesUnsetOptionWithExplicitDefault -16: [ OK ] RepeatingOptionSectionTest.HandlesUnsetOptionWithExplicitDefault (0 ms) +16: [ OK ] RepeatingOptionSectionTest.HandlesUnsetOptionWithExplicitDefault (1 ms) 16: [ RUN ] RepeatingOptionSectionTest.HandlesNestedSections 16: [ OK ] RepeatingOptionSectionTest.HandlesNestedSections (0 ms) -16: [----------] 8 tests from RepeatingOptionSectionTest (0 ms total) +16: [----------] 8 tests from RepeatingOptionSectionTest (1 ms total) 16: 16: [----------] 1 test from TimeUnitManagerTest 16: [ RUN ] TimeUnitManagerTest.BasicOperations @@ -64061,7 +64093,7 @@ 16: [----------] 1 test from TreeValueSupportAssignErrorTest 16: [ RUN ] TreeValueSupportAssignErrorTest.HandlesInvalidValue 16: [ OK ] TreeValueSupportAssignErrorTest.HandlesInvalidValue (0 ms) -16: [----------] 1 test from TreeValueSupportAssignErrorTest (1 ms total) +16: [----------] 1 test from TreeValueSupportAssignErrorTest (0 ms total) 16: 16: [----------] 5 tests from TreeValueSupportCheckTest 16: [ RUN ] TreeValueSupportCheckTest.HandlesEmpty @@ -64073,8 +64105,8 @@ 16: [ RUN ] TreeValueSupportCheckTest.HandlesSmallerTree2 16: [ OK ] TreeValueSupportCheckTest.HandlesSmallerTree2 (0 ms) 16: [ RUN ] TreeValueSupportCheckTest.DetectsExtraValue -16: [ OK ] TreeValueSupportCheckTest.DetectsExtraValue (2 ms) -16: [----------] 5 tests from TreeValueSupportCheckTest (2 ms total) +16: [ OK ] TreeValueSupportCheckTest.DetectsExtraValue (0 ms) +16: [----------] 5 tests from TreeValueSupportCheckTest (0 ms total) 16: 16: [----------] 6 tests from TreeValueSupportAdjustTest 16: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultValues @@ -64082,7 +64114,7 @@ 16: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultVectorValues 16: [ OK ] TreeValueSupportAdjustTest.FillsDefaultVectorValues (0 ms) 16: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultObjectValues -16: [ OK ] TreeValueSupportAdjustTest.FillsDefaultObjectValues (1 ms) +16: [ OK ] TreeValueSupportAdjustTest.FillsDefaultObjectValues (0 ms) 16: [ RUN ] TreeValueSupportAdjustTest.NormalizesValues 16: [ OK ] TreeValueSupportAdjustTest.NormalizesValues (0 ms) 16: [ RUN ] TreeValueSupportAdjustTest.MergesDefaultValues @@ -64095,36 +64127,36 @@ 16: [ RUN ] TreeValueSupportTest.SupportsBooleanOption 16: [ OK ] TreeValueSupportTest.SupportsBooleanOption (0 ms) 16: [ RUN ] TreeValueSupportTest.SupportsIntegerOption -16: [ OK ] TreeValueSupportTest.SupportsIntegerOption (0 ms) +16: [ OK ] TreeValueSupportTest.SupportsIntegerOption (1 ms) 16: [ RUN ] TreeValueSupportTest.SupportsInt64Option -16: [ OK ] TreeValueSupportTest.SupportsInt64Option (1 ms) +16: [ OK ] TreeValueSupportTest.SupportsInt64Option (0 ms) 16: [ RUN ] TreeValueSupportTest.SupportsStringOption 16: [ OK ] TreeValueSupportTest.SupportsStringOption (0 ms) 16: [ RUN ] TreeValueSupportTest.SupportsFloatOption -16: [ OK ] TreeValueSupportTest.SupportsFloatOption (1 ms) +16: [ OK ] TreeValueSupportTest.SupportsFloatOption (0 ms) 16: [ RUN ] TreeValueSupportTest.SupportsDoubleOption 16: [ OK ] TreeValueSupportTest.SupportsDoubleOption (0 ms) 16: [ RUN ] TreeValueSupportTest.SupportsEnumIntOption -16: [ OK ] TreeValueSupportTest.SupportsEnumIntOption (0 ms) +16: [ OK ] TreeValueSupportTest.SupportsEnumIntOption (1 ms) 16: [ RUN ] TreeValueSupportTest.SupportsEnumOption 16: [ OK ] TreeValueSupportTest.SupportsEnumOption (0 ms) 16: [----------] 8 tests from TreeValueSupportTest (2 ms total) 16: 16: [----------] Global test environment tear-down -16: [==========] 110 tests from 18 test cases ran. (13 ms total) +16: [==========] 110 tests from 18 test cases ran. (8 ms total) 16: [ PASSED ] 110 tests. -16/27 Test #16: OptionsUnitTests ................. Passed 0.22 sec +16/27 Test #16: OptionsUnitTests ................. Passed 0.25 sec test 17 Start 17: RandomUnitTests 17: Test command: /build/gromacs-2019.1/build/openmpi/bin/random-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/RandomUnitTests.xml" 17: Test timeout computed to be: 30 17: -------------------------------------------------------------------------- -17: [[23256,1],0]: A high-performance Open MPI point-to-point messaging module +17: [[35431,1],0]: A high-performance Open MPI point-to-point messaging module 17: was unable to find any relevant network interfaces: 17: 17: Module: OpenFabrics (openib) -17: Host: codethink13-arm64 +17: Host: i-capture-the-hostname 17: 17: Another transport will be used instead, although this may result in 17: lower performance. @@ -64165,7 +64197,7 @@ 17: [ OK ] NormalDistributionTest.Reset (0 ms) 17: [ RUN ] NormalDistributionTest.AltParam 17: [ OK ] NormalDistributionTest.AltParam (0 ms) -17: [----------] 4 tests from NormalDistributionTest (0 ms total) +17: [----------] 4 tests from NormalDistributionTest (1 ms total) 17: 17: [----------] 1 test from SeedTest 17: [ RUN ] SeedTest.makeRandomSeed @@ -64174,7 +64206,7 @@ 17: 17: [----------] 6 tests from TabulatedNormalDistributionTest 17: [ RUN ] TabulatedNormalDistributionTest.Output14 -17: [ OK ] TabulatedNormalDistributionTest.Output14 (1 ms) +17: [ OK ] TabulatedNormalDistributionTest.Output14 (0 ms) 17: [ RUN ] TabulatedNormalDistributionTest.Output16 17: [ OK ] TabulatedNormalDistributionTest.Output16 (0 ms) 17: [ RUN ] TabulatedNormalDistributionTest.OutputDouble14 @@ -64185,18 +64217,18 @@ 17: [ OK ] TabulatedNormalDistributionTest.Reset (0 ms) 17: [ RUN ] TabulatedNormalDistributionTest.AltParam 17: [ OK ] TabulatedNormalDistributionTest.AltParam (0 ms) -17: [----------] 6 tests from TabulatedNormalDistributionTest (1 ms total) +17: [----------] 6 tests from TabulatedNormalDistributionTest (0 ms total) 17: 17: [----------] 1 test from TabulatedNormalDistributionTableTest 17: [ RUN ] TabulatedNormalDistributionTableTest.HasValidProperties -17: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (2 ms) -17: [----------] 1 test from TabulatedNormalDistributionTableTest (2 ms total) +17: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (3 ms) +17: [----------] 1 test from TabulatedNormalDistributionTableTest (3 ms total) 17: 17: [----------] 6 tests from ThreeFry2x64Test 17: [ RUN ] ThreeFry2x64Test.Logical 17: [ OK ] ThreeFry2x64Test.Logical (0 ms) 17: [ RUN ] ThreeFry2x64Test.InternalCounterSequence -17: [ OK ] ThreeFry2x64Test.InternalCounterSequence (1 ms) +17: [ OK ] ThreeFry2x64Test.InternalCounterSequence (0 ms) 17: [ RUN ] ThreeFry2x64Test.Reseed 17: [ OK ] ThreeFry2x64Test.Reseed (0 ms) 17: [ RUN ] ThreeFry2x64Test.Discard @@ -64205,7 +64237,7 @@ 17: [ OK ] ThreeFry2x64Test.InvalidCounter (0 ms) 17: [ RUN ] ThreeFry2x64Test.ExhaustInternalCounter 17: [ OK ] ThreeFry2x64Test.ExhaustInternalCounter (0 ms) -17: [----------] 6 tests from ThreeFry2x64Test (1 ms total) +17: [----------] 6 tests from ThreeFry2x64Test (0 ms total) 17: 17: [----------] 4 tests from UniformIntDistributionTest 17: [ RUN ] UniformIntDistributionTest.Output @@ -64220,7 +64252,7 @@ 17: 17: [----------] 5 tests from UniformRealDistributionTest 17: [ RUN ] UniformRealDistributionTest.GenerateCanonical -17: [ OK ] UniformRealDistributionTest.GenerateCanonical (0 ms) +17: [ OK ] UniformRealDistributionTest.GenerateCanonical (1 ms) 17: [ RUN ] UniformRealDistributionTest.Output 17: [ OK ] UniformRealDistributionTest.Output (0 ms) 17: [ RUN ] UniformRealDistributionTest.Logical @@ -64229,11 +64261,11 @@ 17: [ OK ] UniformRealDistributionTest.Reset (0 ms) 17: [ RUN ] UniformRealDistributionTest.AltParam 17: [ OK ] UniformRealDistributionTest.AltParam (0 ms) -17: [----------] 5 tests from UniformRealDistributionTest (0 ms total) +17: [----------] 5 tests from UniformRealDistributionTest (1 ms total) 17: 17: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/0 -17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/0 (1 ms) +17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/0 (0 ms) 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/1 17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/1 (0 ms) 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/2 @@ -64245,28 +64277,28 @@ 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 (0 ms) 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 -17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 (1 ms) +17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 (0 ms) 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 (1 ms) 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 (0 ms) -17: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (3 ms total) +17: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (1 ms total) 17: 17: [----------] Global test environment tear-down -17: [==========] 44 tests from 10 test cases ran. (8 ms total) +17: [==========] 44 tests from 10 test cases ran. (6 ms total) 17: [ PASSED ] 44 tests. -17/27 Test #17: RandomUnitTests .................. Passed 0.27 sec +17/27 Test #17: RandomUnitTests .................. Passed 0.29 sec test 18 Start 18: RestraintTests 18: Test command: /build/gromacs-2019.1/build/openmpi/bin/restraintpotential-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/RestraintTests.xml" 18: Test timeout computed to be: 30 18: -------------------------------------------------------------------------- -18: [[23248,1],0]: A high-performance Open MPI point-to-point messaging module +18: [[35329,1],0]: A high-performance Open MPI point-to-point messaging module 18: was unable to find any relevant network interfaces: 18: 18: Module: OpenFabrics (openib) -18: Host: codethink13-arm64 +18: Host: i-capture-the-hostname 18: 18: Another transport will be used instead, although this may result in 18: lower performance. @@ -64284,18 +64316,18 @@ 18: [----------] Global test environment tear-down 18: [==========] 1 test from 1 test case ran. (0 ms total) 18: [ PASSED ] 1 test. -18/27 Test #18: RestraintTests ................... Passed 0.29 sec +18/27 Test #18: RestraintTests ................... Passed 0.28 sec test 19 Start 19: TableUnitTests 19: Test command: /build/gromacs-2019.1/build/openmpi/bin/table-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/TableUnitTests.xml" 19: Test timeout computed to be: 30 19: -------------------------------------------------------------------------- -19: [[23272,1],0]: A high-performance Open MPI point-to-point messaging module +19: [[35343,1],0]: A high-performance Open MPI point-to-point messaging module 19: was unable to find any relevant network interfaces: 19: 19: Module: OpenFabrics (openib) -19: Host: codethink13-arm64 +19: Host: i-capture-the-hostname 19: 19: Another transport will be used instead, although this may result in 19: lower performance. @@ -64326,7 +64358,7 @@ 19: [ OK ] SplineTableTest/0.Simd (16 ms) 19: [ RUN ] SplineTableTest/0.SimdTwoFunctions 19: [ OK ] SplineTableTest/0.SimdTwoFunctions (64 ms) -19: [----------] 10 tests from SplineTableTest/0 (259 ms total) +19: [----------] 10 tests from SplineTableTest/0 (261 ms total) 19: 19: [----------] 10 tests from SplineTableTest/1, where TypeParam = gmx::CubicSplineTable 19: [ RUN ] SplineTableTest/1.HandlesIncorrectInput @@ -64338,34 +64370,34 @@ 19: [ RUN ] SplineTableTest/1.PmeCorrection 19: [ OK ] SplineTableTest/1.PmeCorrection (3 ms) 19: [ RUN ] SplineTableTest/1.HandlesIncorrectNumericalInput -19: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (0 ms) +19: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (1 ms) 19: [ RUN ] SplineTableTest/1.NumericalInputPmeCorr -19: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (2 ms) +19: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (1 ms) 19: [ RUN ] SplineTableTest/1.TwoFunctions 19: [ OK ] SplineTableTest/1.TwoFunctions (11 ms) 19: [ RUN ] SplineTableTest/1.ThreeFunctions 19: [ OK ] SplineTableTest/1.ThreeFunctions (11 ms) 19: [ RUN ] SplineTableTest/1.Simd -19: [ OK ] SplineTableTest/1.Simd (3 ms) +19: [ OK ] SplineTableTest/1.Simd (4 ms) 19: [ RUN ] SplineTableTest/1.SimdTwoFunctions -19: [ OK ] SplineTableTest/1.SimdTwoFunctions (11 ms) +19: [ OK ] SplineTableTest/1.SimdTwoFunctions (10 ms) 19: [----------] 10 tests from SplineTableTest/1 (51 ms total) 19: 19: [----------] Global test environment tear-down -19: [==========] 20 tests from 2 test cases ran. (311 ms total) +19: [==========] 20 tests from 2 test cases ran. (312 ms total) 19: [ PASSED ] 20 tests. -19/27 Test #19: TableUnitTests ................... Passed 0.52 sec +19/27 Test #19: TableUnitTests ................... Passed 0.59 sec test 20 Start 20: TaskAssignmentUnitTests 20: Test command: /build/gromacs-2019.1/build/openmpi/bin/taskassignment-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/TaskAssignmentUnitTests.xml" 20: Test timeout computed to be: 30 20: -------------------------------------------------------------------------- -20: [[23264,1],0]: A high-performance Open MPI point-to-point messaging module +20: [[35388,1],0]: A high-performance Open MPI point-to-point messaging module 20: was unable to find any relevant network interfaces: 20: 20: Module: OpenFabrics (openib) -20: Host: codethink13-arm64 +20: Host: i-capture-the-hostname 20: 20: Another transport will be used instead, although this may result in 20: lower performance. @@ -64387,18 +64419,18 @@ 20: [----------] Global test environment tear-down 20: [==========] 3 tests from 1 test case ran. (1 ms total) 20: [ PASSED ] 3 tests. -20/27 Test #20: TaskAssignmentUnitTests .......... Passed 0.27 sec +20/27 Test #20: TaskAssignmentUnitTests .......... Passed 0.30 sec test 21 Start 21: UtilityUnitTests 21: Test command: /build/gromacs-2019.1/build/openmpi/bin/utility-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/UtilityUnitTests.xml" 21: Test timeout computed to be: 30 21: -------------------------------------------------------------------------- -21: [[23288,1],0]: A high-performance Open MPI point-to-point messaging module +21: [[35368,1],0]: A high-performance Open MPI point-to-point messaging module 21: was unable to find any relevant network interfaces: 21: 21: Module: OpenFabrics (openib) -21: Host: codethink13-arm64 +21: Host: i-capture-the-hostname 21: 21: Another transport will be used instead, although this may result in 21: lower performance. @@ -64414,25 +64446,25 @@ 21: [ RUN ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment 21: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment -21: [ OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (0 ms) +21: [ OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (1 ms) 21: [ RUN ] AllocatorTest/0.Move 21: [ OK ] AllocatorTest/0.Move (0 ms) 21: [ RUN ] AllocatorTest/0.StatelessAllocatorUsesNoMemory 21: [ OK ] AllocatorTest/0.StatelessAllocatorUsesNoMemory (0 ms) -21: [----------] 5 tests from AllocatorTest/0 (0 ms total) +21: [----------] 5 tests from AllocatorTest/0 (1 ms total) 21: 21: [----------] 5 tests from AllocatorTest/1, where TypeParam = gmx::Allocator 21: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment 21: [ OK ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment -21: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (1 ms) +21: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment 21: [ OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/1.Move 21: [ OK ] AllocatorTest/1.Move (0 ms) 21: [ RUN ] AllocatorTest/1.StatelessAllocatorUsesNoMemory 21: [ OK ] AllocatorTest/1.StatelessAllocatorUsesNoMemory (0 ms) -21: [----------] 5 tests from AllocatorTest/1 (1 ms total) +21: [----------] 5 tests from AllocatorTest/1 (0 ms total) 21: 21: [----------] 5 tests from AllocatorTest/2, where TypeParam = gmx::Allocator 21: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment @@ -64477,7 +64509,7 @@ 21: [ RUN ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment 21: [ OK ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment -21: [ OK ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment (0 ms) +21: [ OK ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment (1 ms) 21: [ RUN ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment 21: [ OK ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/5.Move @@ -64625,7 +64657,7 @@ 21: [ OK ] ArrayRefTest/5.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/5.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/5.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/5 (0 ms total) +21: [----------] 9 tests from ArrayRefTest/5 (1 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/6, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/6.MakeWithAssignmentWorks @@ -64646,7 +64678,7 @@ 21: [ OK ] ArrayRefTest/6.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/6.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/6.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/6 (1 ms total) +21: [----------] 9 tests from ArrayRefTest/6 (0 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/7, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/7.MakeWithAssignmentWorks @@ -64814,7 +64846,7 @@ 21: [ OK ] ArrayRefTest/14.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/14.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/14.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/14 (1 ms total) +21: [----------] 9 tests from ArrayRefTest/14 (0 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/15, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/15.MakeWithAssignmentWorks @@ -64945,12 +64977,12 @@ 21: [ OK ] TreeValueTransformTest.ObjectFromMultipleStrings (0 ms) 21: [ RUN ] TreeValueTransformTest.ScopedTransformRules 21: [ OK ] TreeValueTransformTest.ScopedTransformRules (0 ms) -21: [----------] 6 tests from TreeValueTransformTest (1 ms total) +21: [----------] 6 tests from TreeValueTransformTest (2 ms total) 21: 21: [----------] 1 test from TreeValueTransformErrorTest 21: [ RUN ] TreeValueTransformErrorTest.ConversionError -21: [ OK ] TreeValueTransformErrorTest.ConversionError (1 ms) -21: [----------] 1 test from TreeValueTransformErrorTest (1 ms total) +21: [ OK ] TreeValueTransformErrorTest.ConversionError (0 ms) +21: [----------] 1 test from TreeValueTransformErrorTest (0 ms total) 21: 21: [----------] 2 tests from RegexBasicTest 21: [ RUN ] RegexBasicTest.BasicMatchesWorkWhenSupported @@ -64969,8 +65001,8 @@ 21: [ RUN ] LoggerTest.LevelFilteringWorks 21: [ OK ] LoggerTest.LevelFilteringWorks (0 ms) 21: [ RUN ] LoggerTest.LogsToMultipleStreams -21: [ OK ] LoggerTest.LogsToMultipleStreams (0 ms) -21: [----------] 5 tests from LoggerTest (0 ms total) +21: [ OK ] LoggerTest.LogsToMultipleStreams (1 ms) +21: [----------] 5 tests from LoggerTest (1 ms total) 21: 21: [----------] 4 tests from MutexBasicTest 21: [ RUN ] MutexBasicTest.CanBeMade @@ -64985,12 +65017,12 @@ 21: 21: [----------] 3 tests from MutexTaskTest 21: [ RUN ] MutexTaskTest.MutualExclusionWorksWithLock -21: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (9 ms) +21: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (4 ms) 21: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread -21: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (1 ms) +21: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (0 ms) 21: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread 21: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread (0 ms) -21: [----------] 3 tests from MutexTaskTest (10 ms total) +21: [----------] 3 tests from MutexTaskTest (4 ms total) 21: 21: [----------] 4 tests from PathTest 21: [ RUN ] PathTest.StripSourcePrefixWorks @@ -65020,19 +65052,19 @@ 21: [ RUN ] StringUtilityTest.StripString 21: [ OK ] StringUtilityTest.StripString (0 ms) 21: [ RUN ] StringUtilityTest.SplitString -21: [ OK ] StringUtilityTest.SplitString (0 ms) +21: [ OK ] StringUtilityTest.SplitString (1 ms) 21: [ RUN ] StringUtilityTest.SplitDelimitedString 21: [ OK ] StringUtilityTest.SplitDelimitedString (0 ms) 21: [ RUN ] StringUtilityTest.SplitAndTrimDelimitedString 21: [ OK ] StringUtilityTest.SplitAndTrimDelimitedString (0 ms) -21: [----------] 7 tests from StringUtilityTest (0 ms total) +21: [----------] 7 tests from StringUtilityTest (1 ms total) 21: 21: [----------] 2 tests from FormatStringTest 21: [ RUN ] FormatStringTest.HandlesBasicFormatting 21: [ OK ] FormatStringTest.HandlesBasicFormatting (0 ms) 21: [ RUN ] FormatStringTest.HandlesLongStrings -21: [ OK ] FormatStringTest.HandlesLongStrings (1 ms) -21: [----------] 2 tests from FormatStringTest (1 ms total) +21: [ OK ] FormatStringTest.HandlesLongStrings (0 ms) +21: [----------] 2 tests from FormatStringTest (0 ms total) 21: 21: [----------] 1 test from StringFormatterTest 21: [ RUN ] StringFormatterTest.HandlesBasicFormatting @@ -65068,7 +65100,7 @@ 21: [ RUN ] TextLineWrapperTest.HandlesEmptyStrings 21: [ OK ] TextLineWrapperTest.HandlesEmptyStrings (0 ms) 21: [ RUN ] TextLineWrapperTest.HandlesTrailingWhitespace -21: [ OK ] TextLineWrapperTest.HandlesTrailingWhitespace (0 ms) +21: [ OK ] TextLineWrapperTest.HandlesTrailingWhitespace (1 ms) 21: [ RUN ] TextLineWrapperTest.HandlesTrailingNewlines 21: [ OK ] TextLineWrapperTest.HandlesTrailingNewlines (0 ms) 21: [ RUN ] TextLineWrapperTest.WrapsCorrectly @@ -65174,17 +65206,17 @@ 21: [ OK ] BitmaskTest128_9_78/BitmaskTest128.ToHex/0 (0 ms) 21: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.ToHex/1 21: [ OK ] BitmaskTest128_9_78/BitmaskTest128.ToHex/1 (0 ms) -21: [----------] 12 tests from BitmaskTest128_9_78/BitmaskTest128 (0 ms total) +21: [----------] 12 tests from BitmaskTest128_9_78/BitmaskTest128 (1 ms total) 21: 21: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (4 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 -21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 (4 ms) +21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 (8 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 -21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 (1 ms) +21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 (0 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 -21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 (0 ms) +21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 (4 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (0 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 @@ -65195,13 +65227,13 @@ 21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 (0 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 (0 ms) -21: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (9 ms total) +21: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (16 ms total) 21: 21: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest 21: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 21: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 (0 ms) 21: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/1 -21: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/1 (0 ms) +21: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/1 (1 ms) 21: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/2 21: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/2 (0 ms) 21: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/3 @@ -65209,26 +65241,26 @@ 21: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/4 21: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/4 (0 ms) 21: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5 -21: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5 (1 ms) +21: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5 (0 ms) 21: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6 21: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6 (0 ms) 21: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest (1 ms total) 21: 21: [----------] Global test environment tear-down -21: [==========] 325 tests from 52 test cases ran. (31 ms total) +21: [==========] 325 tests from 52 test cases ran. (34 ms total) 21: [ PASSED ] 325 tests. -21/27 Test #21: UtilityUnitTests ................. Passed 0.33 sec +21/27 Test #21: UtilityUnitTests ................. Passed 0.32 sec test 22 Start 22: UtilityMpiUnitTests 22: Test command: /usr/bin/mpiexec.openmpi "-np" "4" "/build/gromacs-2019.1/build/openmpi/bin/utility-mpi-test" "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/UtilityMpiUnitTests.xml" 22: Test timeout computed to be: 30 22: -------------------------------------------------------------------------- -22: [[23049,1],1]: A high-performance Open MPI point-to-point messaging module +22: [[35544,1],0]: A high-performance Open MPI point-to-point messaging module 22: was unable to find any relevant network interfaces: 22: 22: Module: OpenFabrics (openib) -22: Host: codethink13-arm64 +22: Host: i-capture-the-hostname 22: 22: Another transport will be used instead, although this may result in 22: lower performance. @@ -65240,28 +65272,28 @@ 22: [----------] Global test environment set-up. 22: [----------] 2 tests from PhysicalNodeCommunicatorTest 22: [ RUN ] PhysicalNodeCommunicatorTest.CanConstruct -22: [ OK ] PhysicalNodeCommunicatorTest.CanConstruct (54 ms) +22: [ OK ] PhysicalNodeCommunicatorTest.CanConstruct (70 ms) 22: [ RUN ] PhysicalNodeCommunicatorTest.CanCallBarrier -22: [ OK ] PhysicalNodeCommunicatorTest.CanCallBarrier (88 ms) -22: [----------] 2 tests from PhysicalNodeCommunicatorTest (170 ms total) +22: [ OK ] PhysicalNodeCommunicatorTest.CanCallBarrier (60 ms) +22: [----------] 2 tests from PhysicalNodeCommunicatorTest (158 ms total) 22: 22: [----------] Global test environment tear-down -22: [==========] 2 tests from 1 test case ran. (170 ms total) +22: [==========] 2 tests from 1 test case ran. (159 ms total) 22: [ PASSED ] 2 tests. -22: [codethink13-arm64:31872] 3 more processes have sent help message help-mpi-btl-base.txt / btl:no-nics -22: [codethink13-arm64:31872] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages -22/27 Test #22: UtilityMpiUnitTests .............. Passed 0.74 sec +22: [i-capture-the-hostname:01929] 3 more processes have sent help message help-mpi-btl-base.txt / btl:no-nics +22: [i-capture-the-hostname:01929] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages +22/27 Test #22: UtilityMpiUnitTests .............. Passed 0.78 sec test 23 Start 23: FileIOTests 23: Test command: /build/gromacs-2019.1/build/openmpi/bin/fileio-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/FileIOTests.xml" 23: Test timeout computed to be: 30 23: -------------------------------------------------------------------------- -23: [[23067,1],0]: A high-performance Open MPI point-to-point messaging module +23: [[35577,1],0]: A high-performance Open MPI point-to-point messaging module 23: was unable to find any relevant network interfaces: 23: 23: Module: OpenFabrics (openib) -23: Host: codethink13-arm64 +23: Host: i-capture-the-hostname 23: 23: Another transport will be used instead, although this may result in 23: lower performance. @@ -65288,7 +65320,7 @@ 23: integer value 23: 23: -23: [ OK ] ReadTest.get_eint_WarnsAboutFloat (0 ms) +23: [ OK ] ReadTest.get_eint_WarnsAboutFloat (1 ms) 23: [ RUN ] ReadTest.get_eint_WarnsAboutString 23: 23: ERROR 1 [file unknown, line 0]: @@ -65327,7 +65359,7 @@ 23: 23: 23: [ OK ] ReadTest.get_ereal_WarnsAboutString (0 ms) -23: [----------] 9 tests from ReadTest (0 ms total) +23: [----------] 9 tests from ReadTest (1 ms total) 23: 23: [----------] 2 tests from TngTest 23: [ RUN ] TngTest.CanOpenTngFile @@ -65338,30 +65370,30 @@ 23: 23: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 -23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 (0 ms) +23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 (1 ms) 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 -23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (1 ms) +23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (0 ms) 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (4 ms) 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 -23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (0 ms) -23: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (5 ms total) +23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (1 ms) +23: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (6 ms total) 23: 23: [----------] Global test environment tear-down -23: [==========] 17 tests from 4 test cases ran. (7 ms total) +23: [==========] 17 tests from 4 test cases ran. (8 ms total) 23: [ PASSED ] 17 tests. -23/27 Test #23: FileIOTests ...................... Passed 0.28 sec +23/27 Test #23: FileIOTests ...................... Passed 0.25 sec test 24 Start 24: PullTest 24: Test command: /build/gromacs-2019.1/build/openmpi/bin/pull-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/PullTest.xml" 24: Test timeout computed to be: 30 24: -------------------------------------------------------------------------- -24: [[23059,1],0]: A high-performance Open MPI point-to-point messaging module +24: [[35475,1],0]: A high-performance Open MPI point-to-point messaging module 24: was unable to find any relevant network interfaces: 24: 24: Module: OpenFabrics (openib) -24: Host: codethink13-arm64 +24: Host: i-capture-the-hostname 24: 24: Another transport will be used instead, although this may result in 24: lower performance. @@ -65387,18 +65419,18 @@ 24: [----------] Global test environment tear-down 24: [==========] 5 tests from 1 test case ran. (0 ms total) 24: [ PASSED ] 5 tests. -24/27 Test #24: PullTest ......................... Passed 0.30 sec +24/27 Test #24: PullTest ......................... Passed 0.29 sec test 25 Start 25: AwhTest 25: Test command: /build/gromacs-2019.1/build/openmpi/bin/awh-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/AwhTest.xml" 25: Test timeout computed to be: 30 25: -------------------------------------------------------------------------- -25: [[23083,1],0]: A high-performance Open MPI point-to-point messaging module +25: [[35519,1],0]: A high-performance Open MPI point-to-point messaging module 25: was unable to find any relevant network interfaces: 25: 25: Module: OpenFabrics (openib) -25: Host: codethink13-arm64 +25: Host: i-capture-the-hostname 25: 25: Another transport will be used instead, although this may result in 25: lower performance. @@ -65416,49 +65448,49 @@ 25: [----------] 1 test from gridTest 25: [ RUN ] gridTest.neighborhood 25: [ OK ] gridTest.neighborhood (1 ms) -25: [----------] 1 test from gridTest (1 ms total) +25: [----------] 1 test from gridTest (2 ms total) 25: 25: [----------] 8 tests from WithParameters/BiasTest 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/0 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (1 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (0 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/1 25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/1 (1 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/2 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/2 (0 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/2 (1 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/3 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (1 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (0 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/4 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/4 (1 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/4 (0 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/5 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/5 (0 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/5 (1 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/6 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (1 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (0 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/7 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/7 (1 ms) -25: [----------] 8 tests from WithParameters/BiasTest (6 ms total) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/7 (0 ms) +25: [----------] 8 tests from WithParameters/BiasTest (5 ms total) 25: 25: [----------] 2 tests from WithParameters/BiasStateTest 25: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/0 -25: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/0 (0 ms) +25: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/0 (1 ms) 25: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/1 -25: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/1 (1 ms) +25: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/1 (0 ms) 25: [----------] 2 tests from WithParameters/BiasStateTest (1 ms total) 25: 25: [----------] Global test environment tear-down 25: [==========] 12 tests from 4 test cases ran. (9 ms total) 25: [ PASSED ] 12 tests. -25/27 Test #25: AwhTest .......................... Passed 0.26 sec +25/27 Test #25: AwhTest .......................... Passed 0.31 sec test 26 Start 26: SimdUnitTests 26: Test command: /build/gromacs-2019.1/build/openmpi/bin/simd-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/SimdUnitTests.xml" 26: Test timeout computed to be: 30 26: -------------------------------------------------------------------------- -26: [[23075,1],0]: A high-performance Open MPI point-to-point messaging module +26: [[34137,1],0]: A high-performance Open MPI point-to-point messaging module 26: was unable to find any relevant network interfaces: 26: 26: Module: OpenFabrics (openib) -26: Host: codethink13-arm64 +26: Host: i-capture-the-hostname 26: 26: Another transport will be used instead, although this may result in 26: lower performance. @@ -65629,25 +65661,25 @@ 26: [ RUN ] SimdMathTest.copysign 26: [ OK ] SimdMathTest.copysign (0 ms) 26: [ RUN ] SimdMathTest.invsqrt -26: [ OK ] SimdMathTest.invsqrt (1 ms) +26: [ OK ] SimdMathTest.invsqrt (0 ms) 26: [ RUN ] SimdMathTest.maskzInvsqrt 26: [ OK ] SimdMathTest.maskzInvsqrt (0 ms) 26: [ RUN ] SimdMathTest.invsqrtPair 26: [ OK ] SimdMathTest.invsqrtPair (1 ms) 26: [ RUN ] SimdMathTest.sqrt -26: [ OK ] SimdMathTest.sqrt (0 ms) +26: [ OK ] SimdMathTest.sqrt (1 ms) 26: [ RUN ] SimdMathTest.sqrtUnsafe -26: [ OK ] SimdMathTest.sqrtUnsafe (1 ms) +26: [ OK ] SimdMathTest.sqrtUnsafe (0 ms) 26: [ RUN ] SimdMathTest.inv -26: [ OK ] SimdMathTest.inv (0 ms) +26: [ OK ] SimdMathTest.inv (1 ms) 26: [ RUN ] SimdMathTest.maskzInv 26: [ OK ] SimdMathTest.maskzInv (0 ms) 26: [ RUN ] SimdMathTest.log -26: [ OK ] SimdMathTest.log (0 ms) +26: [ OK ] SimdMathTest.log (1 ms) 26: [ RUN ] SimdMathTest.exp2 26: [ OK ] SimdMathTest.exp2 (2 ms) 26: [ RUN ] SimdMathTest.exp2Unsafe -26: [ OK ] SimdMathTest.exp2Unsafe (1 ms) +26: [ OK ] SimdMathTest.exp2Unsafe (0 ms) 26: [ RUN ] SimdMathTest.exp 26: [ OK ] SimdMathTest.exp (2 ms) 26: [ RUN ] SimdMathTest.expUnsafe @@ -65657,15 +65689,15 @@ 26: [ RUN ] SimdMathTest.erfc 26: [ OK ] SimdMathTest.erfc (2 ms) 26: [ RUN ] SimdMathTest.sin -26: [ OK ] SimdMathTest.sin (1 ms) +26: [ OK ] SimdMathTest.sin (2 ms) 26: [ RUN ] SimdMathTest.cos 26: [ OK ] SimdMathTest.cos (2 ms) 26: [ RUN ] SimdMathTest.tan -26: [ OK ] SimdMathTest.tan (13 ms) +26: [ OK ] SimdMathTest.tan (12 ms) 26: [ RUN ] SimdMathTest.asin -26: [ OK ] SimdMathTest.asin (0 ms) +26: [ OK ] SimdMathTest.asin (1 ms) 26: [ RUN ] SimdMathTest.acos -26: [ OK ] SimdMathTest.acos (0 ms) +26: [ OK ] SimdMathTest.acos (1 ms) 26: [ RUN ] SimdMathTest.atan 26: [ OK ] SimdMathTest.atan (1 ms) 26: [ RUN ] SimdMathTest.atan2 @@ -65675,15 +65707,15 @@ 26: [ RUN ] SimdMathTest.pmePotentialCorrection 26: [ OK ] SimdMathTest.pmePotentialCorrection (2 ms) 26: [ RUN ] SimdMathTest.invsqrtSingleAccuracy -26: [ OK ] SimdMathTest.invsqrtSingleAccuracy (1 ms) +26: [ OK ] SimdMathTest.invsqrtSingleAccuracy (0 ms) 26: [ RUN ] SimdMathTest.invsqrtPairSingleAccuracy 26: [ OK ] SimdMathTest.invsqrtPairSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.sqrtSingleAccuracy -26: [ OK ] SimdMathTest.sqrtSingleAccuracy (0 ms) +26: [ OK ] SimdMathTest.sqrtSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.sqrtSingleAccuracyUnsafe -26: [ OK ] SimdMathTest.sqrtSingleAccuracyUnsafe (1 ms) +26: [ OK ] SimdMathTest.sqrtSingleAccuracyUnsafe (0 ms) 26: [ RUN ] SimdMathTest.invSingleAccuracy -26: [ OK ] SimdMathTest.invSingleAccuracy (0 ms) +26: [ OK ] SimdMathTest.invSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.logSingleAccuracy 26: [ OK ] SimdMathTest.logSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.exp2SingleAccuracy @@ -65697,26 +65729,26 @@ 26: [ RUN ] SimdMathTest.erfSingleAccuracy 26: [ OK ] SimdMathTest.erfSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.erfcSingleAccuracy -26: [ OK ] SimdMathTest.erfcSingleAccuracy (6 ms) +26: [ OK ] SimdMathTest.erfcSingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.sinSingleAccuracy -26: [ OK ] SimdMathTest.sinSingleAccuracy (2 ms) +26: [ OK ] SimdMathTest.sinSingleAccuracy (6 ms) 26: [ RUN ] SimdMathTest.cosSingleAccuracy -26: [ OK ] SimdMathTest.cosSingleAccuracy (2 ms) +26: [ OK ] SimdMathTest.cosSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.tanSingleAccuracy -26: [ OK ] SimdMathTest.tanSingleAccuracy (8 ms) +26: [ OK ] SimdMathTest.tanSingleAccuracy (9 ms) 26: [ RUN ] SimdMathTest.asinSingleAccuracy 26: [ OK ] SimdMathTest.asinSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.acosSingleAccuracy 26: [ OK ] SimdMathTest.acosSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.atanSingleAccuracy -26: [ OK ] SimdMathTest.atanSingleAccuracy (1 ms) +26: [ OK ] SimdMathTest.atanSingleAccuracy (0 ms) 26: [ RUN ] SimdMathTest.atan2SingleAccuracy 26: [ OK ] SimdMathTest.atan2SingleAccuracy (0 ms) 26: [ RUN ] SimdMathTest.pmeForceCorrectionSingleAccuracy 26: [ OK ] SimdMathTest.pmeForceCorrectionSingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.pmePotentialCorrectionSingleAccuracy -26: [ OK ] SimdMathTest.pmePotentialCorrectionSingleAccuracy (2 ms) -26: [----------] 45 tests from SimdMathTest (69 ms total) +26: [ OK ] SimdMathTest.pmePotentialCorrectionSingleAccuracy (1 ms) +26: [----------] 45 tests from SimdMathTest (68 ms total) 26: 26: [----------] 1 test from EmptyArrayRefTest 26: [ RUN ] EmptyArrayRefTest.IsEmpty @@ -65739,7 +65771,7 @@ 26: [ OK ] ArrayRefTest/1.ConstructFromArrayRefWorks (0 ms) 26: [ RUN ] ArrayRefTest/1.ConstructFromArrayWorks 26: [ OK ] ArrayRefTest/1.ConstructFromArrayWorks (0 ms) -26: [----------] 3 tests from ArrayRefTest/1 (0 ms total) +26: [----------] 3 tests from ArrayRefTest/1 (1 ms total) 26: 26: [----------] 3 tests from ArrayRefTest/2, where TypeParam = gmx::ArrayRef 26: [ RUN ] ArrayRefTest/2.ConstructFromPointersWorks @@ -65826,7 +65858,7 @@ 26: [ OK ] SimdIntegerTest.cvtB2IB (0 ms) 26: [ RUN ] SimdIntegerTest.cvtIB2B 26: [ OK ] SimdIntegerTest.cvtIB2B (0 ms) -26: [----------] 23 tests from SimdIntegerTest (1 ms total) +26: [----------] 23 tests from SimdIntegerTest (0 ms total) 26: 26: [----------] 32 tests from Simd4FloatingpointTest 26: [ RUN ] Simd4FloatingpointTest.setZero @@ -65893,7 +65925,7 @@ 26: [ OK ] Simd4FloatingpointTest.dotProduct (0 ms) 26: [ RUN ] Simd4FloatingpointTest.transpose 26: [ OK ] Simd4FloatingpointTest.transpose (0 ms) -26: [----------] 32 tests from Simd4FloatingpointTest (0 ms total) +26: [----------] 32 tests from Simd4FloatingpointTest (1 ms total) 26: 26: [----------] 1 test from Simd4VectorOperationsTest 26: [ RUN ] Simd4VectorOperationsTest.norm2 @@ -65902,9 +65934,9 @@ 26: 26: [----------] 2 tests from Simd4MathTest 26: [ RUN ] Simd4MathTest.invsqrt -26: [ OK ] Simd4MathTest.invsqrt (1 ms) +26: [ OK ] Simd4MathTest.invsqrt (0 ms) 26: [ RUN ] Simd4MathTest.invsqrtSingleaccuracy -26: [ OK ] Simd4MathTest.invsqrtSingleaccuracy (0 ms) +26: [ OK ] Simd4MathTest.invsqrtSingleaccuracy (1 ms) 26: [----------] 2 tests from Simd4MathTest (1 ms total) 26: 26: [----------] 41 tests from SimdScalarTest @@ -65990,7 +66022,7 @@ 26: [ OK ] SimdScalarTest.cvtIB2B (0 ms) 26: [ RUN ] SimdScalarTest.expandScalarsToTriplets 26: [ OK ] SimdScalarTest.expandScalarsToTriplets (0 ms) -26: [----------] 41 tests from SimdScalarTest (1 ms total) +26: [----------] 41 tests from SimdScalarTest (0 ms total) 26: 26: [----------] 8 tests from SimdScalarUtilTest 26: [ RUN ] SimdScalarUtilTest.gatherLoadTranspose @@ -66086,23 +66118,23 @@ 26: [ OK ] SimdScalarMathTest.pmeForceCorrectionSingleAccuracy (0 ms) 26: [ RUN ] SimdScalarMathTest.pmePotentialCorrectionSingleAccuracy 26: [ OK ] SimdScalarMathTest.pmePotentialCorrectionSingleAccuracy (0 ms) -26: [----------] 37 tests from SimdScalarMathTest (0 ms total) +26: [----------] 37 tests from SimdScalarMathTest (1 ms total) 26: 26: [----------] Global test environment tear-down -26: [==========] 277 tests from 22 test cases ran. (73 ms total) +26: [==========] 277 tests from 22 test cases ran. (74 ms total) 26: [ PASSED ] 277 tests. -26/27 Test #26: SimdUnitTests .................... Passed 0.35 sec +26/27 Test #26: SimdUnitTests .................... Passed 0.37 sec test 27 Start 27: CompatibilityHelpersTests 27: Test command: /build/gromacs-2019.1/build/openmpi/bin/compat-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi/Testing/Temporary/CompatibilityHelpersTests.xml" 27: Test timeout computed to be: 30 27: -------------------------------------------------------------------------- -27: [[23099,1],0]: A high-performance Open MPI point-to-point messaging module +27: [[34123,1],0]: A high-performance Open MPI point-to-point messaging module 27: was unable to find any relevant network interfaces: 27: 27: Module: OpenFabrics (openib) -27: Host: codethink13-arm64 +27: Host: i-capture-the-hostname 27: 27: Another transport will be used instead, although this may result in 27: lower performance. @@ -66145,16 +66177,16 @@ 27: [----------] Global test environment tear-down 27: [==========] 6 tests from 6 test cases ran. (0 ms total) 27: [ PASSED ] 6 tests. -27/27 Test #27: CompatibilityHelpersTests ........ Passed 0.27 sec +27/27 Test #27: CompatibilityHelpersTests ........ Passed 0.28 sec 100% tests passed, 0 tests failed out of 27 Label Time Summary: -GTest = 9.92 sec*proc (27 tests) -MpiTest = 2.23 sec*proc (3 tests) -UnitTest = 9.92 sec*proc (27 tests) +GTest = 9.52 sec*proc (27 tests) +MpiTest = 1.74 sec*proc (3 tests) +UnitTest = 9.52 sec*proc (27 tests) -Total Test time (real) = 10.32 sec +Total Test time (real) = 9.99 sec /usr/bin/make -j8 -C build/openmpi-dp tests make[1]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' /usr/bin/cmake -S/build/gromacs-2019.1 -B/build/gromacs-2019.1/build/openmpi-dp --check-build-system CMakeFiles/Makefile.cmake 0 @@ -66165,9 +66197,9 @@ /usr/bin/make -f CMakeFiles/Makefile2 CMakeFiles/tests.dir/all make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= @@ -66175,55 +66207,55 @@ /usr/bin/make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/external/googletest /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/external/googletest /build/gromacs-2019.1/build/openmpi-dp/src/external/googletest/CMakeFiles/gmock.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -Scanning dependencies of target gmock -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/external/googletest /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/external/googletest /build/gromacs-2019.1/build/openmpi-dp/src/external/googletest/CMakeFiles/gmock.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -/usr/bin/make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' +cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build -Scanning dependencies of target onlinehelp-test-shared -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp/src/external/googletest && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googlemock -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/googletest/googletest -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o -c /build/gromacs-2019.1/src/external/googletest/googlemock/src/gmock-all.cc make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp/src/external/googletest && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googlemock -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/googletest/googletest -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o -c /build/gromacs-2019.1/src/external/googletest/googletest/src/gtest-all.cc +/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' +cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= +[ 1%] Built target lmfit_objlib +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build +[ 3%] Built target tng_io_obj +Scanning dependencies of target onlinehelp-test-shared make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build -[ 1%] Built target lmfit_objlib +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/mock_helptopic.cpp -[ 2%] Built target libgromacs_external -Scanning dependencies of target mdrunutility-test-shared -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp -[ 4%] Built target tng_io_obj +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build +[ 4%] Built target libgromacs_external +Scanning dependencies of target gmock make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +Scanning dependencies of target mdrunutility-test-shared +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +/usr/bin/make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/build +/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' +cd /build/gromacs-2019.1/build/openmpi-dp/src/external/googletest && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googlemock -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/googletest/googletest -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o -c /build/gromacs-2019.1/src/external/googletest/googlemock/src/gmock-all.cc +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/external/googletest && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googlemock -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/googletest/googletest -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o -c /build/gromacs-2019.1/src/external/googletest/googletest/src/gtest-all.cc [ 22%] Built target libgromacs_generated /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' @@ -66278,64 +66310,64 @@ make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' [ 83%] Built target testutils /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/compat/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/compat/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/testutils/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests /build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/testutils/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests /build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend -/usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/mdlib/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend +/usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/applied-forces/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/applied-forces/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/listed-forces/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/listed-forces/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend +Scanning dependencies of target testutils-mpi-test make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/commandline/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= -Scanning dependencies of target testutils-mpi-test /usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/domdec/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/domdec/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/mpitest.cpp Scanning dependencies of target compat-test -Scanning dependencies of target domdec-test -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/domdec/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /build/gromacs-2019.1/src/gromacs/domdec/tests/hashedmap.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build -make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/compat/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/make_unique.cpp.o -c /build/gromacs-2019.1/src/gromacs/compat/tests/make_unique.cpp -Scanning dependencies of target applied-forces-test Scanning dependencies of target listed-forces-test make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +Scanning dependencies of target testutils-test Scanning dependencies of target mdlib-test -/usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build +/usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/compat/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/make_unique.cpp.o -c /build/gromacs-2019.1/src/gromacs/compat/tests/make_unique.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -Scanning dependencies of target testutils-test +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/listed-forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/bonded.cpp.o -c /build/gromacs-2019.1/src/gromacs/listed-forces/tests/bonded.cpp /usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/applied-forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/electricfield.cpp.o -c /build/gromacs-2019.1/src/gromacs/applied-forces/tests/electricfield.cpp -/usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build +cd /build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/interactivetest.cpp +Scanning dependencies of target domdec-test +Scanning dependencies of target applied-forces-test make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/calc_verletbuf.cpp -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build +/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +/usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/listed-forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/bonded.cpp.o -c /build/gromacs-2019.1/src/gromacs/listed-forces/tests/bonded.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/domdec/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /build/gromacs-2019.1/src/gromacs/domdec/tests/hashedmap.cpp make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/interactivetest.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/applied-forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/electricfield.cpp.o -c /build/gromacs-2019.1/src/gromacs/applied-forces/tests/electricfield.cpp Scanning dependencies of target commandline-test make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build @@ -66343,10 +66375,10 @@ cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/compat/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /build/gromacs-2019.1/src/gromacs/compat/tests/pointers.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/listed-forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/mdebin.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/mdebin.cpp +/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/listed-forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' [ 83%] Built target testutils-mpi-test /usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend @@ -66364,8 +66396,8 @@ cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/compat/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/compat-test.dir/make_unique.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/applied-forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/settle.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/applied-forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' [ 84%] Built target compat-test /usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend @@ -66376,8 +66408,7 @@ /usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fft/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fft/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/fft.cpp.o -c /build/gromacs-2019.1/src/gromacs/fft/tests/fft.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/applied-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied-forces-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/applied-forces-test.dir/electricfield.cpp.o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/domdec/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' [ 84%] Built target listed-forces-test /usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend @@ -66388,7 +66419,8 @@ /usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/gputest.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/domdec/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/applied-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied-forces-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/applied-forces-test.dir/electricfield.cpp.o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' [ 84%] Built target applied-forces-test /usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend @@ -66399,10 +66431,10 @@ /usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/hardware/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /build/gromacs-2019.1/src/gromacs/hardware/tests/hardwaretopology.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/hostallocator.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/hostallocator.cpp /usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' [ 84%] Built target domdec-test /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend @@ -66419,7 +66451,6 @@ cd /build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/testasserts_tests.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/hardware/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' [ 85%] Built target fft-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend @@ -66430,9 +66461,10 @@ /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinity.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/hardware/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/shake.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/shake.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' [ 85%] Built target hardware-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend @@ -66443,29 +66475,28 @@ /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdrunutility/tests/threadaffinity-mpi.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/xvgtest_tests.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/dofit.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/dofit.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /build/gromacs-2019.1/src/testutils/tests/xvgtest_tests.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/testutils/../external/tinyxml2 -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/functions.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/functions.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/functions.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/functions.cpp [ 86%] Built target testutils-test /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm Scanning dependencies of target onlinehelp-test make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpformat.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmesolvetest.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/simulationsignal.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpmanager.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' [ 86%] Built target mdrunutility-test /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend @@ -66476,9 +66507,10 @@ /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/abstractoptionstorage.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmesolvetest.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpmanager.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' [ 86%] Built target mdrunutility-mpi-test /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend @@ -66491,20 +66523,26 @@ cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/exponentialdistribution.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/updategroups.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/invertmatrix.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpwritercontext.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlineparser.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/devicetransfers.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/gammadistribution.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /build/gromacs-2019.1/src/gromacs/gpu_utils/tests/devicetransfers.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/onlinehelp/tests/helpwritercontext.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/paddedvector.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /build/gromacs-2019.1/src/gromacs/mdlib/tests/updategroupscog.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmesplinespreadtest.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +[ 86%] Built target gpu_utils-test +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/normaldistribution.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -[ 86%] Built target gpu_utils-test +[ 87%] Built target onlinehelp-test /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/restraint/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/restraint/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake --color= @@ -66513,8 +66551,18 @@ /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/restraint/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /build/gromacs-2019.1/src/gromacs/restraint/tests/manager.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/seed.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/seed.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/filenameoption.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/mdebin.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/restraint/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/tabulatednormaldistribution.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/pargs.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/threefry.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -[ 87%] Built target onlinehelp-test +[ 88%] Built target restraintpotential-test /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/tables/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/tables/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= @@ -66523,18 +66571,8 @@ /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/tables/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/tables/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /build/gromacs-2019.1/src/gromacs/tables/tests/splinetable.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmesplinespreadtest.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/restraint/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/mdebin.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/normaldistribution.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/filenameoption.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -[ 88%] Built target restraintpotential-test +[ 89%] Built target mdlib-test /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/taskassignment/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/taskassignment/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= @@ -66543,8 +66581,15 @@ /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /build/gromacs-2019.1/src/gromacs/taskassignment/tests/usergpuids.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/filenameoptionmanager.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmetestcommon.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformintdistribution.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -[ 89%] Built target mdlib-test +[ 90%] Built target commandline-test /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/utility/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake --color= @@ -66553,29 +66598,31 @@ /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/physicalnodecommunicator-mpi.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /build/gromacs-2019.1/src/gromacs/commandline/tests/pargs.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/testhardwarecontexts.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformrealdistribution.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/seed.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/seed.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -[ 90%] Built target utility-mpi-test +[ 91%] Built target taskassignment-test /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/utility/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/filenameoptionmanager.cpp Scanning dependencies of target utility-test make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/alignedallocator.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/tabulatednormaldistribution.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/pmetestcommon.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/arrayref.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/option.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/option.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -[ 91%] Built target taskassignment-test +[ 92%] Built target utility-mpi-test /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/fileio/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fileio/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= @@ -66584,124 +66631,109 @@ /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/confio.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/optionsassigner.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -[ 92%] Built target commandline-test +[ 93%] Built target ewald-test /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/pulling/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/pulling/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /build/gromacs-2019.1/src/gromacs/ewald/tests/testhardwarecontexts.cpp Scanning dependencies of target pull-test make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/pulling/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/pull.cpp.o -c /build/gromacs-2019.1/src/gromacs/pulling/tests/pull.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/threefry.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/filemd5.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/pulling/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/option.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/option.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/tables/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/tables/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/arrayref.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /build/gromacs-2019.1/src/gromacs/math/tests/vectypes.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -[ 93%] Built target ewald-test +[ 94%] Built target random-test /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/awh/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/awh/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/readinp.cpp Scanning dependencies of target awh-test make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/bias.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/bias.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/optionsassigner.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/pulling/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/filemd5.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -[ 93%] Built target pull-test +[ 94%] Built target pull-test +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask32.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/tables/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/tables/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/readinp.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask64.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +[ 94%] Built target table-test /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs/simd/tests /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +[ 94%] Built target math-test +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask128.cpp Scanning dependencies of target simd-test make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/bootstrap_loadstore.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -[ 93%] Built target table-test -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/repeatingsection.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/base.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/base.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/biasstate.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/keyvaluetreeserializer.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /build/gromacs-2019.1/src/gromacs/fileio/tests/tngio.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformintdistribution.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/base.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/base.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/keyvaluetreetransform.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -[ 93%] Built target fileio-test +[ 94%] Built target fileio-test +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/repeatingsection.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_floatingpoint.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -[ 93%] Built target math-test +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/gmxregex.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/gmxregex.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/grid.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/grid.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/logger.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/logger.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/mutex.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_floatingpoint_util.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/biasstate.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build/gromacs-2019.1/src/gromacs/random/tests/uniformrealdistribution.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/path.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/path.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +[ 94%] Built target awh-test cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/timeunitmanager.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/physicalnodecommunicator.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_vector_operations.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/stringutil.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/textreader.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /build/gromacs-2019.1/src/gromacs/options/tests/treesupport.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/grid.cpp.o -c /build/gromacs-2019.1/src/gromacs/awh/tests/grid.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_vector_operations.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_math.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_memory.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/textwriter.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd_integer.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -[ 94%] Built target random-test -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask32.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -[ 94%] Built target awh-test -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask64.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/typetraits.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4_floatingpoint.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' [ 95%] Built target options-test -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/bitmask128.cpp +cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4_floatingpoint.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4_vector_operations.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/simd4_math.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/keyvaluetreeserializer.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/scalar.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/keyvaluetreetransform.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/scalar_util.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /build/gromacs-2019.1/src/gromacs/simd/tests/scalar_math.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/gmxregex.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/gmxregex.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/logger.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/logger.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/mutex.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/path.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/path.cpp -cd 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/usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/stringutil.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/textreader.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/textwriter.cpp -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /build/gromacs-2019.1/src/gromacs/utility/tests/typetraits.cpp cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/gromacs-2019.1/build/openmpi-dp/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/googletest/googletest/include -isystem /build/gromacs-2019.1/src/external/googletest/googlemock/include -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/gromacs-2019.1/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' [ 97%] Built target simd-test cd /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 @@ -66743,11 +66775,11 @@ 1: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/testutils-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/TestUtilsUnitTests.xml" 1: Test timeout computed to be: 30 1: -------------------------------------------------------------------------- -1: [[30010,1],0]: A high-performance Open MPI point-to-point messaging module +1: [[60328,1],0]: A high-performance Open MPI point-to-point messaging module 1: was unable to find any relevant network interfaces: 1: 1: Module: OpenFabrics (openib) -1: Host: codethink13-arm64 +1: Host: i-capture-the-hostname 1: 1: Another transport will be used instead, although this may result in 1: lower performance. @@ -66761,13 +66793,13 @@ 1: [ RUN ] InteractiveTestHelperTest.ChecksSimpleSession 1: [ OK ] InteractiveTestHelperTest.ChecksSimpleSession (1 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline -1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline (1 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline (0 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput -1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput (0 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput -1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput (1 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsIncorrectOutput -1: [ OK ] InteractiveTestHelperTest.DetectsIncorrectOutput (0 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsIncorrectOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingOutput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingFinalOutput @@ -66777,16 +66809,16 @@ 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingInput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingInput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraInput -1: [ OK ] InteractiveTestHelperTest.DetectsExtraInput (1 ms) -1: [----------] 10 tests from InteractiveTestHelperTest (7 ms total) +1: [ OK ] InteractiveTestHelperTest.DetectsExtraInput (0 ms) +1: [----------] 10 tests from InteractiveTestHelperTest (5 ms total) 1: 1: [----------] 34 tests from ReferenceDataTest 1: [ RUN ] ReferenceDataTest.HandlesSimpleData 1: [ OK ] ReferenceDataTest.HandlesSimpleData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesFloatingPointData -1: [ OK ] ReferenceDataTest.HandlesFloatingPointData (0 ms) +1: [ OK ] ReferenceDataTest.HandlesFloatingPointData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesPresenceChecks -1: [ OK ] ReferenceDataTest.HandlesPresenceChecks (1 ms) +1: [ OK ] ReferenceDataTest.HandlesPresenceChecks (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesStringBlockData 1: [ OK ] ReferenceDataTest.HandlesStringBlockData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVectorData @@ -66796,7 +66828,7 @@ 1: [ RUN ] ReferenceDataTest.HandlesSequenceOfCustomData 1: [ OK ] ReferenceDataTest.HandlesSequenceOfCustomData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectData -1: [ OK ] ReferenceDataTest.HandlesIncorrectData (1 ms) +1: [ OK ] ReferenceDataTest.HandlesIncorrectData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectDataType 1: [ OK ] ReferenceDataTest.HandlesIncorrectDataType (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingData @@ -66806,9 +66838,9 @@ 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInSequence 1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInSequence (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInCompound -1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInCompound (0 ms) +1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInCompound (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariants -1: [ OK ] ReferenceDataTest.HandlesVariants (1 ms) +1: [ OK ] ReferenceDataTest.HandlesVariants (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTree 1: [ OK ] ReferenceDataTest.HandlesKeyValueTree (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeExtraKey @@ -66818,25 +66850,25 @@ 1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectValue 1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectValue (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectType -1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectType (5 ms) +1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectType (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingReferenceDataFile 1: [ OK ] ReferenceDataTest.HandlesMissingReferenceDataFile (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSpecialCharactersInStrings 1: [ OK ] ReferenceDataTest.HandlesSpecialCharactersInStrings (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace -1: [ OK ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace (1 ms) +1: [ OK ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmptyStrings 1: [ OK ] ReferenceDataTest.HandlesEmptyStrings (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock -1: [ OK ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock (0 ms) +1: [ OK ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceItemIndices -1: [ OK ] ReferenceDataTest.HandlesSequenceItemIndices (1 ms) +1: [ OK ] ReferenceDataTest.HandlesSequenceItemIndices (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData -1: [ OK ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData (0 ms) +1: [ OK ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleNullIds 1: [ OK ] ReferenceDataTest.HandlesMultipleNullIds (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds -1: [ OK ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds (1 ms) +1: [ OK ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesReadingValues 1: [ OK ] ReferenceDataTest.HandlesReadingValues (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges @@ -66846,10 +66878,10 @@ 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (0 ms) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (1 ms) -1: [----------] 34 tests from ReferenceDataTest (17 ms total) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (0 ms) +1: [----------] 34 tests from ReferenceDataTest (10 ms total) 1: 1: [----------] 7 tests from FloatingPointDifferenceTest 1: [ RUN ] FloatingPointDifferenceTest.HandlesEqualValues @@ -66883,28 +66915,28 @@ 1: [ RUN ] XvgTests.CreateFile 1: [ OK ] XvgTests.CreateFile (1 ms) 1: [ RUN ] XvgTests.CheckMissing -1: [ OK ] XvgTests.CheckMissing (1 ms) +1: [ OK ] XvgTests.CheckMissing (0 ms) 1: [ RUN ] XvgTests.CheckExtra -1: [ OK ] XvgTests.CheckExtra (0 ms) +1: [ OK ] XvgTests.CheckExtra (1 ms) 1: [ RUN ] XvgTests.ReadIncorrect -1: [ OK ] XvgTests.ReadIncorrect (0 ms) +1: [ OK ] XvgTests.ReadIncorrect (1 ms) 1: [----------] 4 tests from XvgTests (3 ms total) 1: 1: [----------] Global test environment tear-down -1: [==========] 59 tests from 5 test cases ran. (27 ms total) +1: [==========] 59 tests from 5 test cases ran. (18 ms total) 1: [ PASSED ] 59 tests. - 1/27 Test #1: TestUtilsUnitTests ............... Passed 0.31 sec + 1/27 Test #1: TestUtilsUnitTests ............... Passed 0.19 sec test 2 Start 2: TestUtilsMpiUnitTests 2: Test command: /usr/bin/mpiexec.openmpi "-np" "2" "/build/gromacs-2019.1/build/openmpi-dp/bin/testutils-mpi-test" "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/TestUtilsMpiUnitTests.xml" 2: Test timeout computed to be: 30 2: -------------------------------------------------------------------------- -2: [[30023,1],0]: A high-performance Open MPI point-to-point messaging module +2: [[60007,1],1]: A high-performance Open MPI point-to-point messaging module 2: was unable to find any relevant network interfaces: 2: 2: Module: OpenFabrics (openib) -2: Host: codethink13-arm64 +2: Host: i-capture-the-hostname 2: 2: Another transport will be used instead, although this may result in 2: lower performance. @@ -66917,25 +66949,25 @@ 2: [----------] 1 test from MpiSelfTest 2: [ RUN ] MpiSelfTest.Runs 2: [ OK ] MpiSelfTest.Runs (0 ms) -2: [----------] 1 test from MpiSelfTest (1 ms total) +2: [----------] 1 test from MpiSelfTest (0 ms total) 2: 2: [----------] Global test environment tear-down -2: [==========] 1 test from 1 test case ran. (1 ms total) +2: [==========] 1 test from 1 test case ran. (0 ms total) 2: [ PASSED ] 1 test. -2: [codethink13-arm64:21454] 1 more process has sent help message help-mpi-btl-base.txt / btl:no-nics -2: [codethink13-arm64:21454] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages - 2/27 Test #2: TestUtilsMpiUnitTests ............ Passed 0.34 sec +2: [i-capture-the-hostname:26422] 1 more process has sent help message help-mpi-btl-base.txt / btl:no-nics +2: [i-capture-the-hostname:26422] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages + 2/27 Test #2: TestUtilsMpiUnitTests ............ Passed 0.19 sec test 3 Start 3: MdlibUnitTest 3: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/mdlib-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/MdlibUnitTest.xml" 3: Test timeout computed to be: 30 3: -------------------------------------------------------------------------- -3: [[30074,1],0]: A high-performance Open MPI point-to-point messaging module +3: [[59938,1],0]: A high-performance Open MPI point-to-point messaging module 3: was unable to find any relevant network interfaces: 3: 3: Module: OpenFabrics (openib) -3: Host: codethink13-arm64 +3: Host: i-capture-the-hostname 3: 3: Another transport will be used instead, although this may result in 3: lower performance. @@ -66952,9 +66984,9 @@ 3: 3: [----------] 3 tests from PrintEbin 3: [ RUN ] PrintEbin.print_ebin_HandlesEmptyAverages -3: [ OK ] PrintEbin.print_ebin_HandlesEmptyAverages (0 ms) +3: [ OK ] PrintEbin.print_ebin_HandlesEmptyAverages (1 ms) 3: [ RUN ] PrintEbin.pr_ebin_HandlesAverages -3: [ OK ] PrintEbin.pr_ebin_HandlesAverages (1 ms) +3: [ OK ] PrintEbin.pr_ebin_HandlesAverages (0 ms) 3: [ RUN ] PrintEbin.pr_ebin_HandlesEmptyAverages 3: [ OK ] PrintEbin.pr_ebin_HandlesEmptyAverages (0 ms) 3: [----------] 3 tests from PrintEbin (1 ms total) @@ -67072,18 +67104,18 @@ 3: [----------] Global test environment tear-down 3: [==========] 50 tests from 8 test cases ran. (4 ms total) 3: [ PASSED ] 50 tests. - 3/27 Test #3: MdlibUnitTest .................... Passed 0.30 sec + 3/27 Test #3: MdlibUnitTest .................... Passed 0.17 sec test 4 Start 4: AppliedForcesUnitTest 4: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/applied-forces-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/AppliedForcesUnitTest.xml" 4: Test timeout computed to be: 30 4: -------------------------------------------------------------------------- -4: [[29328,1],0]: A high-performance Open MPI point-to-point messaging module +4: [[59946,1],0]: A high-performance Open MPI point-to-point messaging module 4: was unable to find any relevant network interfaces: 4: 4: Module: OpenFabrics (openib) -4: Host: codethink13-arm64 +4: Host: i-capture-the-hostname 4: 4: Another transport will be used instead, although this may result in 4: lower performance. @@ -67105,18 +67137,18 @@ 4: [----------] Global test environment tear-down 4: [==========] 3 tests from 1 test case ran. (0 ms total) 4: [ PASSED ] 3 tests. - 4/27 Test #4: AppliedForcesUnitTest ............ Passed 0.26 sec + 4/27 Test #4: AppliedForcesUnitTest ............ Passed 0.17 sec test 5 Start 5: ListedForcesTest 5: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/listed-forces-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/ListedForcesTest.xml" 5: Test timeout computed to be: 30 5: -------------------------------------------------------------------------- -5: [[29369,1],0]: A high-performance Open MPI point-to-point messaging module +5: [[60114,1],0]: A high-performance Open MPI point-to-point messaging module 5: was unable to find any relevant network interfaces: 5: 5: Module: OpenFabrics (openib) -5: Host: codethink13-arm64 +5: Host: i-capture-the-hostname 5: 5: Another transport will be used instead, although this may result in 5: lower performance. @@ -67128,7 +67160,7 @@ 5: [----------] Global test environment set-up. 5: [----------] 15 tests from BondedTest 5: [ RUN ] BondedTest.BondAnglePbcNone -5: [ OK ] BondedTest.BondAnglePbcNone (1 ms) +5: [ OK ] BondedTest.BondAnglePbcNone (0 ms) 5: [ RUN ] BondedTest.BondAnglePbcXy 5: [ OK ] BondedTest.BondAnglePbcXy (0 ms) 5: [ RUN ] BondedTest.BondAnglePbcXyz @@ -67140,13 +67172,13 @@ 5: [ RUN ] BondedTest.DihedralAnglePbcXyz 5: [ OK ] BondedTest.DihedralAnglePbcXyz (0 ms) 5: [ RUN ] BondedTest.IfuncBondsPbcNo -5: [ OK ] BondedTest.IfuncBondsPbcNo (0 ms) +5: [ OK ] BondedTest.IfuncBondsPbcNo (1 ms) 5: [ RUN ] BondedTest.IfuncBondsPbcXy 5: [ OK ] BondedTest.IfuncBondsPbcXy (0 ms) 5: [ RUN ] BondedTest.IfuncBondsPbcXyz 5: [ OK ] BondedTest.IfuncBondsPbcXyz (0 ms) 5: [ RUN ] BondedTest.IfuncAnglesPbcNo -5: [ OK ] BondedTest.IfuncAnglesPbcNo (1 ms) +5: [ OK ] BondedTest.IfuncAnglesPbcNo (0 ms) 5: [ RUN ] BondedTest.IfuncAnglesPbcXy 5: [ OK ] BondedTest.IfuncAnglesPbcXy (0 ms) 5: [ RUN ] BondedTest.IfuncAnglesPbcXYZ @@ -67157,23 +67189,23 @@ 5: [ OK ] BondedTest.IfuncProperDihedralsPbcXy (0 ms) 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcXyz 5: [ OK ] BondedTest.IfuncProperDihedralsPbcXyz (0 ms) -5: [----------] 15 tests from BondedTest (2 ms total) +5: [----------] 15 tests from BondedTest (1 ms total) 5: 5: [----------] Global test environment tear-down -5: [==========] 15 tests from 1 test case ran. (2 ms total) +5: [==========] 15 tests from 1 test case ran. (3 ms total) 5: [ PASSED ] 15 tests. - 5/27 Test #5: ListedForcesTest ................. Passed 0.27 sec + 5/27 Test #5: ListedForcesTest ................. Passed 0.17 sec test 6 Start 6: CommandLineUnitTests 6: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/commandline-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/CommandLineUnitTests.xml" 6: Test timeout computed to be: 30 6: -------------------------------------------------------------------------- -6: [[29390,1],0]: A high-performance Open MPI point-to-point messaging module +6: [[60098,1],0]: A high-performance Open MPI point-to-point messaging module 6: was unable to find any relevant network interfaces: 6: 6: Module: OpenFabrics (openib) -6: Host: codethink13-arm64 +6: Host: i-capture-the-hostname 6: 6: Another transport will be used instead, although this may result in 6: lower performance. @@ -67189,20 +67221,20 @@ 6: [ RUN ] CommandLineHelpModuleTest.PrintsHelpOnTopic 6: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (0 ms) 6: [ RUN ] CommandLineHelpModuleTest.ExportsHelp -6: [ OK ] CommandLineHelpModuleTest.ExportsHelp (2 ms) -6: [----------] 3 tests from CommandLineHelpModuleTest (3 ms total) +6: [ OK ] CommandLineHelpModuleTest.ExportsHelp (1 ms) +6: [----------] 3 tests from CommandLineHelpModuleTest (2 ms total) 6: 6: [----------] 6 tests from CommandLineHelpWriterTest 6: [ RUN ] CommandLineHelpWriterTest.HandlesOptionTypes -6: [ OK ] CommandLineHelpWriterTest.HandlesOptionTypes (0 ms) +6: [ OK ] CommandLineHelpWriterTest.HandlesOptionTypes (1 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables -6: [ OK ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables (1 ms) +6: [ OK ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesLongFileOptions -6: [ OK ] CommandLineHelpWriterTest.HandlesLongFileOptions (0 ms) +6: [ OK ] CommandLineHelpWriterTest.HandlesLongFileOptions (1 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesLongOptions 6: [ OK ] CommandLineHelpWriterTest.HandlesLongOptions (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesOptionGroups -6: [ OK ] CommandLineHelpWriterTest.HandlesOptionGroups (1 ms) +6: [ OK ] CommandLineHelpWriterTest.HandlesOptionGroups (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesHelpText 6: [ OK ] CommandLineHelpWriterTest.HandlesHelpText (0 ms) 6: [----------] 6 tests from CommandLineHelpWriterTest (2 ms total) @@ -67213,7 +67245,7 @@ 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelp 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelp (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet -6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet (1 ms) +6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule @@ -67224,13 +67256,13 @@ 6: 6: [----------] 13 tests from CommandLineParserTest 6: [ RUN ] CommandLineParserTest.HandlesSingleValues -6: [ OK ] CommandLineParserTest.HandlesSingleValues (0 ms) +6: [ OK ] CommandLineParserTest.HandlesSingleValues (1 ms) 6: [ RUN ] CommandLineParserTest.HandlesBooleanWithoutArgument 6: [ OK ] CommandLineParserTest.HandlesBooleanWithoutArgument (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesBooleanAsNoWithoutArgument 6: [ OK ] CommandLineParserTest.HandlesBooleanAsNoWithoutArgument (0 ms) 6: [ RUN ] CommandLineParserTest.ThrowsWithBooleanAsNoWithArgument -6: [ OK ] CommandLineParserTest.ThrowsWithBooleanAsNoWithArgument (1 ms) +6: [ OK ] CommandLineParserTest.ThrowsWithBooleanAsNoWithArgument (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesNegativeNumbers 6: [ OK ] CommandLineParserTest.HandlesNegativeNumbers (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesString @@ -67249,7 +67281,7 @@ 6: [ OK ] CommandLineParserTest.CanAllowPositionalArguments (0 ms) 6: [ RUN ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions 6: [ OK ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions (0 ms) -6: [----------] 13 tests from CommandLineParserTest (1 ms total) +6: [----------] 13 tests from CommandLineParserTest (2 ms total) 6: 6: [----------] 6 tests from CommandLineProgramContextTest 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithAbsolutePath @@ -67257,14 +67289,14 @@ 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithRelativePath 6: [ OK ] CommandLineProgramContextTest.FindsBinaryWithRelativePath (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromPath -6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromPath (1 ms) +6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromPath (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromCurrentDirectory 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromCurrentDirectory (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink (0 ms) -6: [----------] 6 tests from CommandLineProgramContextTest (1 ms total) +6: [----------] 6 tests from CommandLineProgramContextTest (0 ms total) 6: 6: [----------] 21 tests from ParseCommonArgsTest 6: [ RUN ] ParseCommonArgsTest.ParsesIntegerArgs @@ -67290,7 +67322,7 @@ 6: [ RUN ] ParseCommonArgsTest.ParsesFileArgsWithDefaults 6: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaults (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName -6: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName (1 ms) +6: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension 6: [ OK ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension (0 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesNonExistentInputFiles @@ -67300,32 +67332,32 @@ 6: [ RUN ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified 6: [ OK ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified (0 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesCompressedFiles -6: [ OK ] ParseCommonArgsTest.HandlesCompressedFiles (5 ms) +6: [ OK ] ParseCommonArgsTest.HandlesCompressedFiles (0 ms) 6: [ RUN ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension -6: [ OK ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension (0 ms) +6: [ OK ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension (1 ms) 6: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFile 6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (0 ms) 6: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName -6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (0 ms) +6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (1 ms) 6: [ RUN ] ParseCommonArgsTest.CanKeepUnknownArgs 6: [ OK ] ParseCommonArgsTest.CanKeepUnknownArgs (0 ms) -6: [----------] 21 tests from ParseCommonArgsTest (7 ms total) +6: [----------] 21 tests from ParseCommonArgsTest (3 ms total) 6: 6: [----------] Global test environment tear-down -6: [==========] 55 tests from 6 test cases ran. (15 ms total) +6: [==========] 55 tests from 6 test cases ran. (10 ms total) 6: [ PASSED ] 55 tests. - 6/27 Test #6: CommandLineUnitTests ............. Passed 0.26 sec + 6/27 Test #6: CommandLineUnitTests ............. Passed 0.17 sec test 7 Start 7: DomDecTests 7: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/domdec-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/DomDecTests.xml" 7: Test timeout computed to be: 30 7: -------------------------------------------------------------------------- -7: [[29399,1],0]: A high-performance Open MPI point-to-point messaging module +7: [[60111,1],0]: A high-performance Open MPI point-to-point messaging module 7: was unable to find any relevant network interfaces: 7: 7: Module: OpenFabrics (openib) -7: Host: codethink13-arm64 +7: Host: i-capture-the-hostname 7: 7: Another transport will be used instead, although this may result in 7: lower performance. @@ -67350,7 +67382,7 @@ 7: [ OK ] HashedMap.LinkedEntries (0 ms) 7: [ RUN ] HashedMap.ResizesTable 7: [ OK ] HashedMap.ResizesTable (0 ms) -7: [----------] 7 tests from HashedMap (1 ms total) +7: [----------] 7 tests from HashedMap (0 ms total) 7: 7: [----------] 2 tests from LocalAtomSetManager 7: [ RUN ] LocalAtomSetManager.CanAddEmptyLocalAtomSet @@ -67360,20 +67392,20 @@ 7: [----------] 2 tests from LocalAtomSetManager (0 ms total) 7: 7: [----------] Global test environment tear-down -7: [==========] 9 tests from 2 test cases ran. (1 ms total) +7: [==========] 9 tests from 2 test cases ran. (0 ms total) 7: [ PASSED ] 9 tests. - 7/27 Test #7: DomDecTests ...................... Passed 0.28 sec + 7/27 Test #7: DomDecTests ...................... Passed 0.17 sec test 8 Start 8: EwaldUnitTests 8: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/ewald-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/EwaldUnitTests.xml" 8: Test timeout computed to be: 30 8: -------------------------------------------------------------------------- -8: [[29436,1],0]: A high-performance Open MPI point-to-point messaging module +8: [[60157,1],0]: A high-performance Open MPI point-to-point messaging module 8: was unable to find any relevant network interfaces: 8: 8: Module: OpenFabrics (openib) -8: Host: codethink13-arm64 +8: Host: i-capture-the-hostname 8: 8: Another transport will be used instead, although this may result in 8: lower performance. @@ -67398,54 +67430,54 @@ 8: 8: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (8 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (4 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (3 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (6 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (3 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (3 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (6 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (3 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (3 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (3 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (3 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (1 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (3 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (2 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (3 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (2 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (3 ms) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (1 ms) 8: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 -8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (2 ms) -8: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (65 ms total) +8: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (3 ms) +8: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (56 ms total) 8: 8: [----------] 144 tests from SaneInput/PmeGatherTest 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/0 @@ -67469,9 +67501,9 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/9 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/9 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/10 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/11 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/12 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/13 @@ -67489,21 +67521,21 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/19 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/20 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/20 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/20 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/21 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/21 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/22 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/23 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/24 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (2 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/25 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/25 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/26 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/26 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/27 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/27 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/27 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/28 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/28 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/29 @@ -67515,61 +67547,61 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/32 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/32 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/33 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/33 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/33 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/34 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/34 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/35 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/35 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/35 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/36 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/37 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/37 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/37 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/38 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/38 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/38 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/39 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/40 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/40 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/41 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/41 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/42 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/42 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/42 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/43 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/43 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/43 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/44 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/44 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/44 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/45 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/45 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/45 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/46 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/46 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/46 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/47 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/47 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/47 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/48 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/48 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/48 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/49 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/49 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/49 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/50 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/50 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/50 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/51 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/51 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/51 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/52 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/52 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/52 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/53 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/53 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/53 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/54 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/54 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/55 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/55 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/56 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/56 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/56 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/57 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/57 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/58 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/58 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/58 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/59 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/59 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/59 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/60 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/60 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/60 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/61 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/61 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/62 @@ -67583,7 +67615,7 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/66 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/66 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/67 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/68 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/69 @@ -67595,53 +67627,53 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/72 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/72 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/73 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/73 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/73 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/74 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/74 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/74 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/75 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/75 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/75 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/76 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/76 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/76 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/77 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/77 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/77 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/78 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/78 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/79 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/79 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/80 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/81 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/82 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/82 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/83 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/83 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/83 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/84 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/85 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/85 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/86 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/86 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/86 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/87 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/87 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/88 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/88 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/88 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/89 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/90 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/91 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/91 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/92 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/92 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/92 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/93 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/93 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/93 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/94 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/94 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/94 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/95 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/95 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/95 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/96 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/96 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/96 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/97 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/97 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/98 @@ -67649,33 +67681,33 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/99 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/100 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/101 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/102 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/103 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/104 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/105 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/105 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/105 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/106 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/106 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/106 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/107 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/107 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/107 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/108 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/109 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/109 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/109 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/110 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/110 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/110 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/111 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/111 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/111 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/112 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/112 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/112 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/113 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/113 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/113 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/114 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/114 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/115 @@ -67695,35 +67727,35 @@ 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/122 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/122 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/123 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/123 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/123 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/124 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/124 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/124 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/125 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/125 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/125 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/126 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/126 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/126 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/127 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/127 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/128 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/128 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/129 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/130 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/130 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/130 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/131 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/131 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/131 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/132 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/132 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/132 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/133 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/133 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/133 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/134 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/134 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/134 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/135 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/135 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/135 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/136 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/136 (0 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/136 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/137 -8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/137 (1 ms) +8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/137 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/138 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/138 (1 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/139 @@ -67736,31 +67768,31 @@ 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (0 ms) 8: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/143 8: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (1 ms) -8: [----------] 144 tests from SaneInput/PmeGatherTest (77 ms total) +8: [----------] 144 tests from SaneInput/PmeGatherTest (71 ms total) 8: 8: [----------] 16 tests from SaneInput/PmeSolveTest 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/0 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/1 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (3 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/2 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/2 (1 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/2 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/3 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (3 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/4 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/5 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (2 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/6 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/7 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/7 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/8 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (2 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/9 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (2 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (3 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/10 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (2 ms) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/11 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (2 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/12 @@ -67770,14 +67802,14 @@ 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/14 8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (1 ms) 8: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/15 -8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (2 ms) -8: [----------] 16 tests from SaneInput/PmeSolveTest (30 ms total) +8: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (1 ms) +8: [----------] 16 tests from SaneInput/PmeSolveTest (26 ms total) 8: 8: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 -8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (1 ms) +8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (2 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 -8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 (2 ms) +8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 @@ -67785,16 +67817,16 @@ 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 -8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (2 ms) +8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 8: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (1 ms) -8: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (10 ms total) +8: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (9 ms total) 8: 8: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (3 ms) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (2 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (3 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 @@ -67806,10 +67838,10 @@ 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (3 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 -8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (2 ms) +8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 8: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (2 ms) -8: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (18 ms total) +8: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (16 ms total) 8: 8: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 @@ -67819,32 +67851,32 @@ 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (3 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (2 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 (2 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (0 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (1 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (2 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (2 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (2 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (3 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (2 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (2 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 -8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (2 ms) +8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 (1 ms) 8: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 8: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (2 ms) -8: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (27 ms total) +8: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (26 ms total) 8: 8: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 @@ -67864,22 +67896,22 @@ 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 -8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (1 ms) +8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (2 ms) 8: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 8: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (2 ms) -8: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (25 ms total) +8: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (24 ms total) 8: 8: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (2 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (1 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 (2 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 (1 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (2 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 @@ -67897,14 +67929,14 @@ 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (3 ms) 8: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 -8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (4 ms) +8: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (3 ms) 8: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (29 ms total) 8: 8: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (4 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (3 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (5 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (4 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (6 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 @@ -67912,36 +67944,36 @@ 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (9 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (10 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (9 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (4 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (3 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (4 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (5 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (6 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (7 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (6 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (8 ms) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (7 ms) 8: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 -8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (9 ms) -8: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (86 ms total) +8: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (8 ms) +8: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (79 ms total) 8: 8: [----------] Global test environment tear-down -8: [==========] 257 tests from 10 test cases ran. (476 ms total) +8: [==========] 257 tests from 10 test cases ran. (365 ms total) 8: [ PASSED ] 257 tests. - 8/27 Test #8: EwaldUnitTests ................... Passed 0.80 sec + 8/27 Test #8: EwaldUnitTests ................... Passed 0.59 sec test 9 Start 9: FFTUnitTests 9: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/fft-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/FFTUnitTests.xml" 9: Test timeout computed to be: 30 9: -------------------------------------------------------------------------- -9: [[29251,1],0]: A high-performance Open MPI point-to-point messaging module +9: [[58627,1],0]: A high-performance Open MPI point-to-point messaging module 9: was unable to find any relevant network interfaces: 9: 9: Module: OpenFabrics (openib) -9: Host: codethink13-arm64 +9: Host: i-capture-the-hostname 9: 9: Another transport will be used instead, although this may result in 9: lower performance. @@ -67953,26 +67985,26 @@ 9: [----------] Global test environment set-up. 9: [----------] 2 tests from ManyFFTTest 9: [ RUN ] ManyFFTTest.Complex1DLength48Multi5Test -9: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (7 ms) +9: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (6 ms) 9: [ RUN ] ManyFFTTest.Real1DLength48Multi5Test -9: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (15 ms) -9: [----------] 2 tests from ManyFFTTest (23 ms total) +9: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (10 ms) +9: [----------] 2 tests from ManyFFTTest (16 ms total) 9: 9: [----------] 1 test from FFTTest 9: [ RUN ] FFTTest.Real2DLength18_15Test -9: [ OK ] FFTTest.Real2DLength18_15Test (4 ms) +9: [ OK ] FFTTest.Real2DLength18_15Test (3 ms) 9: [----------] 1 test from FFTTest (4 ms total) 9: 9: [----------] 1 test from FFFTest3D 9: [ RUN ] FFFTest3D.Real5_6_9 -9: [ OK ] FFFTest3D.Real5_6_9 (3 ms) -9: [----------] 1 test from FFFTest3D (4 ms total) +9: [ OK ] FFFTest3D.Real5_6_9 (2 ms) +9: [----------] 1 test from FFFTest3D (3 ms total) 9: 9: [----------] 10 tests from 7_8_25_36_60/FFTTest1D 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/0 9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/0 (0 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/1 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/1 (1 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/1 (0 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/2 9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (1 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/3 @@ -67980,32 +68012,32 @@ 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/4 9: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (2 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/0 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (1 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (0 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/1 9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (1 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/2 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/2 (0 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/2 (1 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/3 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (11 ms) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (5 ms) 9: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/4 -9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (9 ms) -9: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (28 ms total) +9: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (8 ms) +9: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (21 ms total) 9: 9: [----------] Global test environment tear-down -9: [==========] 14 tests from 4 test cases ran. (59 ms total) +9: [==========] 14 tests from 4 test cases ran. (44 ms total) 9: [ PASSED ] 14 tests. - 9/27 Test #9: FFTUnitTests ..................... Passed 0.31 sec + 9/27 Test #9: FFTUnitTests ..................... Passed 0.21 sec test 10 Start 10: GpuUtilsUnitTests 10: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/gpu_utils-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/GpuUtilsUnitTests.xml" 10: Test timeout computed to be: 30 10: -------------------------------------------------------------------------- -10: [[29311,1],0]: A high-performance Open MPI point-to-point messaging module +10: [[58845,1],0]: A high-performance Open MPI point-to-point messaging module 10: was unable to find any relevant network interfaces: 10: 10: Module: OpenFabrics (openib) -10: Host: codethink13-arm64 +10: Host: i-capture-the-hostname 10: 10: Another transport will be used instead, although this may result in 10: lower performance. @@ -68094,7 +68126,7 @@ 10: [ OK ] HostAllocatorTestNoMem/1.Swap (0 ms) 10: [ RUN ] HostAllocatorTestNoMem/1.Comparison 10: [ OK ] HostAllocatorTestNoMem/1.Comparison (0 ms) -10: [----------] 5 tests from HostAllocatorTestNoMem/1 (0 ms total) +10: [----------] 5 tests from HostAllocatorTestNoMem/1 (1 ms total) 10: 10: [----------] 5 tests from HostAllocatorTestNoMem/2, where TypeParam = gmx::BasicVector 10: [ RUN ] HostAllocatorTestNoMem/2.CreateVector @@ -68146,7 +68178,7 @@ 10: [----------] 1 test from HostAllocatorUntypedTest 10: [ RUN ] HostAllocatorUntypedTest.Comparison 10: [ OK ] HostAllocatorUntypedTest.Comparison (0 ms) -10: [----------] 1 test from HostAllocatorUntypedTest (1 ms total) +10: [----------] 1 test from HostAllocatorUntypedTest (0 ms total) 10: 10: [----------] 4 tests from AllocatorTest/0, where TypeParam = gmx::Allocator 10: [ RUN ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment @@ -68174,39 +68206,39 @@ 10: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment 10: [ OK ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment -10: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (0 ms) +10: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (1 ms) 10: [ RUN ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment 10: [ OK ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/2.Move 10: [ OK ] AllocatorTest/2.Move (0 ms) -10: [----------] 4 tests from AllocatorTest/2 (0 ms total) +10: [----------] 4 tests from AllocatorTest/2 (1 ms total) 10: 10: [----------] 4 tests from AllocatorTest/3, where TypeParam = gmx::Allocator 10: [ RUN ] AllocatorTest/3.AllocatorAlignAllocatesWithAlignment 10: [ OK ] AllocatorTest/3.AllocatorAlignAllocatesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/3.VectorAllocatesAndResizesWithAlignment -10: [ OK ] AllocatorTest/3.VectorAllocatesAndResizesWithAlignment (1 ms) +10: [ OK ] AllocatorTest/3.VectorAllocatesAndResizesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/3.VectorAllocatesAndReservesWithAlignment 10: [ OK ] AllocatorTest/3.VectorAllocatesAndReservesWithAlignment (0 ms) 10: [ RUN ] AllocatorTest/3.Move 10: [ OK ] AllocatorTest/3.Move (0 ms) -10: [----------] 4 tests from AllocatorTest/3 (1 ms total) +10: [----------] 4 tests from AllocatorTest/3 (0 ms total) 10: 10: [----------] Global test environment tear-down 10: [==========] 60 tests from 19 test cases ran. (2 ms total) 10: [ PASSED ] 60 tests. -10/27 Test #10: GpuUtilsUnitTests ................ Passed 0.29 sec +10/27 Test #10: GpuUtilsUnitTests ................ Passed 0.18 sec test 11 Start 11: HardwareUnitTests 11: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/hardware-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/HardwareUnitTests.xml" 11: Test timeout computed to be: 30 11: -------------------------------------------------------------------------- -11: [[29589,1],0]: A high-performance Open MPI point-to-point messaging module +11: [[58857,1],0]: A high-performance Open MPI point-to-point messaging module 11: was unable to find any relevant network interfaces: 11: 11: Module: OpenFabrics (openib) -11: Host: codethink13-arm64 +11: Host: i-capture-the-hostname 11: 11: Another transport will be used instead, although this may result in 11: lower performance. @@ -68218,30 +68250,30 @@ 11: [----------] Global test environment set-up. 11: [----------] 4 tests from HardwareTopologyTest 11: [ RUN ] HardwareTopologyTest.Execute -11: [ OK ] HardwareTopologyTest.Execute (39 ms) +11: [ OK ] HardwareTopologyTest.Execute (18 ms) 11: [ RUN ] HardwareTopologyTest.HwlocExecute -11: [ OK ] HardwareTopologyTest.HwlocExecute (36 ms) +11: [ OK ] HardwareTopologyTest.HwlocExecute (18 ms) 11: [ RUN ] HardwareTopologyTest.ProcessorSelfconsistency -11: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (32 ms) +11: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (17 ms) 11: [ RUN ] HardwareTopologyTest.NumaCacheSelfconsistency -11: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (28 ms) -11: [----------] 4 tests from HardwareTopologyTest (135 ms total) +11: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (19 ms) +11: [----------] 4 tests from HardwareTopologyTest (72 ms total) 11: 11: [----------] Global test environment tear-down -11: [==========] 4 tests from 1 test case ran. (135 ms total) +11: [==========] 4 tests from 1 test case ran. (72 ms total) 11: [ PASSED ] 4 tests. -11/27 Test #11: HardwareUnitTests ................ Passed 0.39 sec +11/27 Test #11: HardwareUnitTests ................ Passed 0.24 sec test 12 Start 12: MathUnitTests 12: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/math-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/MathUnitTests.xml" 12: Test timeout computed to be: 30 12: -------------------------------------------------------------------------- -12: [[29618,1],0]: A high-performance Open MPI point-to-point messaging module +12: [[58769,1],0]: A high-performance Open MPI point-to-point messaging module 12: was unable to find any relevant network interfaces: 12: 12: Module: OpenFabrics (openib) -12: Host: codethink13-arm64 +12: Host: i-capture-the-hostname 12: 12: Another transport will be used instead, although this may result in 12: lower performance. @@ -68295,7 +68327,7 @@ 12: [ OK ] StructureSimilarityTest.YieldsCorrectRMSDWithIndex (0 ms) 12: [ RUN ] StructureSimilarityTest.YieldsCorrectRhoWidthIndex 12: [ OK ] StructureSimilarityTest.YieldsCorrectRhoWidthIndex (0 ms) -12: [----------] 6 tests from StructureSimilarityTest (0 ms total) +12: [----------] 6 tests from StructureSimilarityTest (1 ms total) 12: 12: [----------] 21 tests from FunctionTest 12: [ RUN ] FunctionTest.StaticLog2 @@ -68303,13 +68335,13 @@ 12: [ RUN ] FunctionTest.Log2I32Bit 12: [ OK ] FunctionTest.Log2I32Bit (0 ms) 12: [ RUN ] FunctionTest.Log2I64Bit -12: [ OK ] FunctionTest.Log2I64Bit (1 ms) +12: [ OK ] FunctionTest.Log2I64Bit (0 ms) 12: [ RUN ] FunctionTest.GreatestCommonDivisor 12: [ OK ] FunctionTest.GreatestCommonDivisor (0 ms) 12: [ RUN ] FunctionTest.InvsqrtFloat 12: [ OK ] FunctionTest.InvsqrtFloat (0 ms) 12: [ RUN ] FunctionTest.InvsqrtDouble -12: [ OK ] FunctionTest.InvsqrtDouble (0 ms) +12: [ OK ] FunctionTest.InvsqrtDouble (1 ms) 12: [ RUN ] FunctionTest.InvsqrtInteger 12: [ OK ] FunctionTest.InvsqrtInteger (0 ms) 12: [ RUN ] FunctionTest.InvcbrtFloat @@ -68317,7 +68349,7 @@ 12: [ RUN ] FunctionTest.InvcbrtDouble 12: [ OK ] FunctionTest.InvcbrtDouble (0 ms) 12: [ RUN ] FunctionTest.InvcbrtInteger -12: [ OK ] FunctionTest.InvcbrtInteger (1 ms) +12: [ OK ] FunctionTest.InvcbrtInteger (0 ms) 12: [ RUN ] FunctionTest.SixthrootFloat 12: [ OK ] FunctionTest.SixthrootFloat (0 ms) 12: [ RUN ] FunctionTest.SixthrootDouble @@ -68325,7 +68357,7 @@ 12: [ RUN ] FunctionTest.SixthrootInteger 12: [ OK ] FunctionTest.SixthrootInteger (0 ms) 12: [ RUN ] FunctionTest.InvsixthrootFloat -12: [ OK ] FunctionTest.InvsixthrootFloat (0 ms) +12: [ OK ] FunctionTest.InvsixthrootFloat (1 ms) 12: [ RUN ] FunctionTest.InvsixthrootDouble 12: [ OK ] FunctionTest.InvsixthrootDouble (0 ms) 12: [ RUN ] FunctionTest.InvsixthrootInteger @@ -68333,14 +68365,14 @@ 12: [ RUN ] FunctionTest.Powers 12: [ OK ] FunctionTest.Powers (0 ms) 12: [ RUN ] FunctionTest.ErfInvFloat -12: [ OK ] FunctionTest.ErfInvFloat (1 ms) +12: [ OK ] FunctionTest.ErfInvFloat (0 ms) 12: [ RUN ] FunctionTest.ErfInvDouble 12: [ OK ] FunctionTest.ErfInvDouble (0 ms) 12: [ RUN ] FunctionTest.ErfAndErfInvAreInversesFloat 12: [ OK ] FunctionTest.ErfAndErfInvAreInversesFloat (0 ms) 12: [ RUN ] FunctionTest.ErfAndErfInvAreInversesDouble -12: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (0 ms) -12: [----------] 21 tests from FunctionTest (4 ms total) +12: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (1 ms) +12: [----------] 21 tests from FunctionTest (3 ms total) 12: 12: [----------] 2 tests from InvertMatrixTest 12: [ RUN ] InvertMatrixTest.IdentityIsImpotent @@ -68409,7 +68441,7 @@ 12: [ OK ] PaddedVectorTest/4.CanMoveAssign (0 ms) 12: [ RUN ] PaddedVectorTest/4.CanSwap 12: [ OK ] PaddedVectorTest/4.CanSwap (0 ms) -12: [----------] 4 tests from PaddedVectorTest/4 (0 ms total) +12: [----------] 4 tests from PaddedVectorTest/4 (1 ms total) 12: 12: [----------] 4 tests from PaddedVectorTest/5, where TypeParam = gmx::Allocator 12: [ RUN ] PaddedVectorTest/5.ConstructsResizesAndReserves @@ -68446,14 +68478,14 @@ 12: 12: [----------] 4 tests from PaddedVectorTest/8, where TypeParam = gmx::Allocator, gmx::AlignedAllocationPolicy> 12: [ RUN ] PaddedVectorTest/8.ConstructsResizesAndReserves -12: [ OK ] PaddedVectorTest/8.ConstructsResizesAndReserves (1 ms) +12: [ OK ] PaddedVectorTest/8.ConstructsResizesAndReserves (0 ms) 12: [ RUN ] PaddedVectorTest/8.CanCopyAssign 12: [ OK ] PaddedVectorTest/8.CanCopyAssign (0 ms) 12: [ RUN ] PaddedVectorTest/8.CanMoveAssign 12: [ OK ] PaddedVectorTest/8.CanMoveAssign (0 ms) 12: [ RUN ] PaddedVectorTest/8.CanSwap 12: [ OK ] PaddedVectorTest/8.CanSwap (0 ms) -12: [----------] 4 tests from PaddedVectorTest/8 (1 ms total) +12: [----------] 4 tests from PaddedVectorTest/8 (0 ms total) 12: 12: [----------] 4 tests from PaddedVectorTest/9, where TypeParam = gmx::Allocator, gmx::AlignedAllocationPolicy> 12: [ RUN ] PaddedVectorTest/9.ConstructsResizesAndReserves @@ -68536,20 +68568,20 @@ 12: [----------] 33 tests from RVecTest (0 ms total) 12: 12: [----------] Global test environment tear-down -12: [==========] 112 tests from 20 test cases ran. (6 ms total) +12: [==========] 112 tests from 20 test cases ran. (5 ms total) 12: [ PASSED ] 112 tests. -12/27 Test #12: MathUnitTests .................... Passed 0.27 sec +12/27 Test #12: MathUnitTests .................... Passed 0.17 sec test 13 Start 13: MdrunUtilityUnitTests 13: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/mdrunutility-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/MdrunUtilityUnitTests.xml" 13: Test timeout computed to be: 30 13: -------------------------------------------------------------------------- -13: [[29648,1],0]: A high-performance Open MPI point-to-point messaging module +13: [[58755,1],0]: A high-performance Open MPI point-to-point messaging module 13: was unable to find any relevant network interfaces: 13: 13: Module: OpenFabrics (openib) -13: Host: codethink13-arm64 +13: Host: i-capture-the-hostname 13: 13: Another transport will be used instead, although this may result in 13: lower performance. @@ -68565,25 +68597,25 @@ 13: [ RUN ] ThreadAffinityTest.DoesNothingWhenNotSupported 13: [ OK ] ThreadAffinityTest.DoesNothingWhenNotSupported (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads -13: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads (1 ms) +13: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads -13: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads (0 ms) +13: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads (1 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads 13: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithUnknownHardware -13: [ OK ] ThreadAffinityTest.DoesNothingWithUnknownHardware (1 ms) +13: [ OK ] ThreadAffinityTest.DoesNothingWithUnknownHardware (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithTooManyThreads 13: [ OK ] ThreadAffinityTest.DoesNothingWithTooManyThreads (0 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeOffset -13: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeOffset (0 ms) +13: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeOffset (1 ms) 13: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeStride 13: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeStride (0 ms) 13: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithAuto -13: [ OK ] ThreadAffinityTest.PinsSingleThreadWithAuto (1 ms) +13: [ OK ] ThreadAffinityTest.PinsSingleThreadWithAuto (0 ms) 13: [ RUN ] ThreadAffinityTest.PinsSingleThreadWhenForced -13: [ OK ] ThreadAffinityTest.PinsSingleThreadWhenForced (0 ms) +13: [ OK ] ThreadAffinityTest.PinsSingleThreadWhenForced (1 ms) 13: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced -13: [ OK ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced (1 ms) +13: [ OK ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced (0 ms) 13: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread 13: NOTE: Affinity setting failed. 13: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread (0 ms) @@ -68592,27 +68624,27 @@ 13: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced 13: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (0 ms) 13: [ RUN ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads -13: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (6 ms) +13: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (1 ms) 13: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing 13: NOTE: Affinity setting for 1/2 threads failed. -13: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (1 ms) -13: [----------] 17 tests from ThreadAffinityTest (12 ms total) +13: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (0 ms) +13: [----------] 17 tests from ThreadAffinityTest (5 ms total) 13: 13: [----------] Global test environment tear-down -13: [==========] 17 tests from 1 test case ran. (12 ms total) +13: [==========] 17 tests from 1 test case ran. (5 ms total) 13: [ PASSED ] 17 tests. -13/27 Test #13: MdrunUtilityUnitTests ............ Passed 0.28 sec +13/27 Test #13: MdrunUtilityUnitTests ............ Passed 0.18 sec test 14 Start 14: MdrunUtilityMpiUnitTests 14: Test command: /usr/bin/mpiexec.openmpi "-np" "4" "/build/gromacs-2019.1/build/openmpi-dp/bin/mdrunutility-mpi-test" "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/MdrunUtilityMpiUnitTests.xml" 14: Test timeout computed to be: 30 14: -------------------------------------------------------------------------- -14: [[29688,1],0]: A high-performance Open MPI point-to-point messaging module +14: [[58765,1],0]: A high-performance Open MPI point-to-point messaging module 14: was unable to find any relevant network interfaces: 14: 14: Module: OpenFabrics (openib) -14: Host: codethink13-arm64 +14: Host: i-capture-the-hostname 14: 14: Another transport will be used instead, although this may result in 14: lower performance. @@ -68624,17 +68656,17 @@ 14: [----------] Global test environment set-up. 14: [----------] 6 tests from ThreadAffinityMultiRankTest 14: [ RUN ] ThreadAffinityMultiRankTest.PinsWholeNode -14: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (1 ms) +14: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (0 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride -14: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (1 ms) +14: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (0 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.PinsTwoNodes -14: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (0 ms) +14: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (1 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled 14: [ OK ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled (0 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto -14: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (1 ms) +14: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (0 ms) 14: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce -14: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (0 ms) +14: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (1 ms) 14: [----------] 6 tests from ThreadAffinityMultiRankTest (3 ms total) 14: 14: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest @@ -68647,30 +68679,30 @@ 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly 14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (0 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (81 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (1 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (57 ms) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (0 ms) 14: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly -14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (57 ms) -14: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (232 ms total) +14: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (1 ms) +14: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (10 ms total) 14: 14: [----------] Global test environment tear-down -14: [==========] 13 tests from 2 test cases ran. (235 ms total) +14: [==========] 13 tests from 2 test cases ran. (14 ms total) 14: [ PASSED ] 13 tests. -14: [codethink13-arm64:21873] 3 more processes have sent help message help-mpi-btl-base.txt / btl:no-nics -14: [codethink13-arm64:21873] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages -14/27 Test #14: MdrunUtilityMpiUnitTests ......... Passed 0.81 sec +14: [i-capture-the-hostname:26844] 3 more processes have sent help message help-mpi-btl-base.txt / btl:no-nics +14: [i-capture-the-hostname:26844] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages +14/27 Test #14: MdrunUtilityMpiUnitTests ......... Passed 0.25 sec test 15 Start 15: OnlineHelpUnitTests 15: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/onlinehelp-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/OnlineHelpUnitTests.xml" 15: Test timeout computed to be: 30 15: -------------------------------------------------------------------------- -15: [[29505,1],0]: A high-performance Open MPI point-to-point messaging module +15: [[58449,1],0]: A high-performance Open MPI point-to-point messaging module 15: was unable to find any relevant network interfaces: 15: 15: Module: OpenFabrics (openib) -15: Host: codethink13-arm64 +15: Host: i-capture-the-hostname 15: 15: Another transport will be used instead, although this may result in 15: lower performance. @@ -68702,14 +68734,14 @@ 15: [ OK ] HelpManagerTest.HandlesSubTopics (0 ms) 15: [ RUN ] HelpManagerTest.HandlesInvalidTopics 15: [ OK ] HelpManagerTest.HandlesInvalidTopics (0 ms) -15: [----------] 3 tests from HelpManagerTest (0 ms total) +15: [----------] 3 tests from HelpManagerTest (1 ms total) 15: 15: [----------] 2 tests from HelpTopicFormattingTest 15: [ RUN ] HelpTopicFormattingTest.FormatsSimpleTopic -15: [ OK ] HelpTopicFormattingTest.FormatsSimpleTopic (1 ms) +15: [ OK ] HelpTopicFormattingTest.FormatsSimpleTopic (0 ms) 15: [ RUN ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics 15: [ OK ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics (0 ms) -15: [----------] 2 tests from HelpTopicFormattingTest (1 ms total) +15: [----------] 2 tests from HelpTopicFormattingTest (0 ms total) 15: 15: [----------] 11 tests from HelpWriterContextTest 15: [ RUN ] HelpWriterContextTest.FormatsParagraphs @@ -68721,7 +68753,7 @@ 15: [ RUN ] HelpWriterContextTest.FormatsLiteralText 15: [ OK ] HelpWriterContextTest.FormatsLiteralText (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsLiteralTextAtBeginning -15: [ OK ] HelpWriterContextTest.FormatsLiteralTextAtBeginning (1 ms) +15: [ OK ] HelpWriterContextTest.FormatsLiteralTextAtBeginning (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsLiteralTextWithIndentation 15: [ OK ] HelpWriterContextTest.FormatsLiteralTextWithIndentation (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsBulletList @@ -68733,24 +68765,24 @@ 15: [ RUN ] HelpWriterContextTest.FormatsGridTable 15: [ OK ] HelpWriterContextTest.FormatsGridTable (0 ms) 15: [ RUN ] HelpWriterContextTest.FormatsTitles -15: [ OK ] HelpWriterContextTest.FormatsTitles (0 ms) -15: [----------] 11 tests from HelpWriterContextTest (1 ms total) +15: [ OK ] HelpWriterContextTest.FormatsTitles (1 ms) +15: [----------] 11 tests from HelpWriterContextTest (2 ms total) 15: 15: [----------] Global test environment tear-down -15: [==========] 22 tests from 4 test cases ran. (3 ms total) +15: [==========] 22 tests from 4 test cases ran. (4 ms total) 15: [ PASSED ] 22 tests. -15/27 Test #15: OnlineHelpUnitTests .............. Passed 0.26 sec +15/27 Test #15: OnlineHelpUnitTests .............. Passed 0.17 sec test 16 Start 16: OptionsUnitTests 16: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/options-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/OptionsUnitTests.xml" 16: Test timeout computed to be: 30 16: -------------------------------------------------------------------------- -16: [[29551,1],0]: A high-performance Open MPI point-to-point messaging module +16: [[58435,1],0]: A high-performance Open MPI point-to-point messaging module 16: was unable to find any relevant network interfaces: 16: 16: Module: OpenFabrics (openib) -16: Host: codethink13-arm64 +16: Host: i-capture-the-hostname 16: 16: Another transport will be used instead, although this may result in 16: lower performance. @@ -68798,7 +68830,7 @@ 16: [ RUN ] FileNameOptionManagerTest.AddsMissingCustomDefaultExtension 16: [ OK ] FileNameOptionManagerTest.AddsMissingCustomDefaultExtension (0 ms) 16: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile -16: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile (0 ms) +16: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile (1 ms) 16: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile 16: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile (0 ms) 16: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingDefaultInputFile @@ -68808,7 +68840,7 @@ 16: [ RUN ] FileNameOptionManagerTest.AcceptsMissingInputFileIfSpecified 16: [ OK ] FileNameOptionManagerTest.AcceptsMissingInputFileIfSpecified (0 ms) 16: [ RUN ] FileNameOptionManagerTest.AcceptsMissingDefaultInputFileIfSpecified -16: [ OK ] FileNameOptionManagerTest.AcceptsMissingDefaultInputFileIfSpecified (1 ms) +16: [ OK ] FileNameOptionManagerTest.AcceptsMissingDefaultInputFileIfSpecified (0 ms) 16: [ RUN ] FileNameOptionManagerTest.AcceptsMissingRequiredInputFileIfSpecified 16: [ OK ] FileNameOptionManagerTest.AcceptsMissingRequiredInputFileIfSpecified (0 ms) 16: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionBasedOnExistingFile @@ -68842,13 +68874,13 @@ 16: [ RUN ] OptionsAssignerTest.HandlesMissingValue 16: [ OK ] OptionsAssignerTest.HandlesMissingValue (0 ms) 16: [ RUN ] OptionsAssignerTest.HandlesExtraValue -16: [ OK ] OptionsAssignerTest.HandlesExtraValue (0 ms) +16: [ OK ] OptionsAssignerTest.HandlesExtraValue (1 ms) 16: [ RUN ] OptionsAssignerTest.HandlesGroups 16: [ OK ] OptionsAssignerTest.HandlesGroups (0 ms) 16: [ RUN ] OptionsAssignerTest.HandlesSections 16: [ OK ] OptionsAssignerTest.HandlesSections (0 ms) 16: [ RUN ] OptionsAssignerTest.HandlesMultipleSources -16: [ OK ] OptionsAssignerTest.HandlesMultipleSources (1 ms) +16: [ OK ] OptionsAssignerTest.HandlesMultipleSources (0 ms) 16: [----------] 9 tests from OptionsAssignerTest (1 ms total) 16: 16: [----------] 4 tests from OptionsAssignerBooleanTest @@ -68923,7 +68955,7 @@ 16: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVariable (0 ms) 16: [ RUN ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVector 16: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVector (0 ms) -16: [----------] 9 tests from OptionsAssignerStringTest (0 ms total) +16: [----------] 9 tests from OptionsAssignerStringTest (1 ms total) 16: 16: [----------] 6 tests from OptionsAssignerEnumTest 16: [ RUN ] OptionsAssignerEnumTest.StoresSingleValue @@ -68972,8 +69004,8 @@ 16: [ RUN ] TimeUnitBehaviorTest.ScalesUserInputWithMultipleSources 16: [ OK ] TimeUnitBehaviorTest.ScalesUserInputWithMultipleSources (0 ms) 16: [ RUN ] TimeUnitBehaviorTest.TimeUnitOptionWorks -16: [ OK ] TimeUnitBehaviorTest.TimeUnitOptionWorks (1 ms) -16: [----------] 4 tests from TimeUnitBehaviorTest (1 ms total) +16: [ OK ] TimeUnitBehaviorTest.TimeUnitOptionWorks (0 ms) +16: [----------] 4 tests from TimeUnitBehaviorTest (0 ms total) 16: 16: [----------] 2 tests from TreeValueSupportAssignTest 16: [ RUN ] TreeValueSupportAssignTest.AssignsFromTree @@ -68985,7 +69017,7 @@ 16: [----------] 1 test from TreeValueSupportAssignErrorTest 16: [ RUN ] TreeValueSupportAssignErrorTest.HandlesInvalidValue 16: [ OK ] TreeValueSupportAssignErrorTest.HandlesInvalidValue (0 ms) -16: [----------] 1 test from TreeValueSupportAssignErrorTest (0 ms total) +16: [----------] 1 test from TreeValueSupportAssignErrorTest (1 ms total) 16: 16: [----------] 5 tests from TreeValueSupportCheckTest 16: [ RUN ] TreeValueSupportCheckTest.HandlesEmpty @@ -69013,21 +69045,21 @@ 16: [ OK ] TreeValueSupportAdjustTest.MergesDefaultValues (0 ms) 16: [ RUN ] TreeValueSupportAdjustTest.OrdersValues 16: [ OK ] TreeValueSupportAdjustTest.OrdersValues (0 ms) -16: [----------] 6 tests from TreeValueSupportAdjustTest (1 ms total) +16: [----------] 6 tests from TreeValueSupportAdjustTest (0 ms total) 16: 16: [----------] 8 tests from TreeValueSupportTest 16: [ RUN ] TreeValueSupportTest.SupportsBooleanOption 16: [ OK ] TreeValueSupportTest.SupportsBooleanOption (0 ms) 16: [ RUN ] TreeValueSupportTest.SupportsIntegerOption -16: [ OK ] TreeValueSupportTest.SupportsIntegerOption (1 ms) +16: [ OK ] TreeValueSupportTest.SupportsIntegerOption (0 ms) 16: [ RUN ] TreeValueSupportTest.SupportsInt64Option 16: [ OK ] TreeValueSupportTest.SupportsInt64Option (0 ms) 16: [ RUN ] TreeValueSupportTest.SupportsStringOption -16: [ OK ] TreeValueSupportTest.SupportsStringOption (1 ms) +16: [ OK ] TreeValueSupportTest.SupportsStringOption (0 ms) 16: [ RUN ] TreeValueSupportTest.SupportsFloatOption 16: [ OK ] TreeValueSupportTest.SupportsFloatOption (0 ms) 16: [ RUN ] TreeValueSupportTest.SupportsDoubleOption -16: [ OK ] TreeValueSupportTest.SupportsDoubleOption (0 ms) +16: [ OK ] TreeValueSupportTest.SupportsDoubleOption (1 ms) 16: [ RUN ] TreeValueSupportTest.SupportsEnumIntOption 16: [ OK ] TreeValueSupportTest.SupportsEnumIntOption (0 ms) 16: [ RUN ] TreeValueSupportTest.SupportsEnumOption @@ -69035,20 +69067,20 @@ 16: [----------] 8 tests from TreeValueSupportTest (2 ms total) 16: 16: [----------] Global test environment tear-down -16: [==========] 110 tests from 18 test cases ran. (9 ms total) +16: [==========] 110 tests from 18 test cases ran. (7 ms total) 16: [ PASSED ] 110 tests. -16/27 Test #16: OptionsUnitTests ................. Passed 0.33 sec +16/27 Test #16: OptionsUnitTests ................. Passed 0.17 sec test 17 Start 17: RandomUnitTests 17: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/random-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/RandomUnitTests.xml" 17: Test timeout computed to be: 30 17: -------------------------------------------------------------------------- -17: [[28806,1],0]: A high-performance Open MPI point-to-point messaging module +17: [[58467,1],0]: A high-performance Open MPI point-to-point messaging module 17: was unable to find any relevant network interfaces: 17: 17: Module: OpenFabrics (openib) -17: Host: codethink13-arm64 +17: Host: i-capture-the-hostname 17: 17: Another transport will be used instead, although this may result in 17: lower performance. @@ -69084,12 +69116,12 @@ 17: [ RUN ] NormalDistributionTest.Output 17: [ OK ] NormalDistributionTest.Output (0 ms) 17: [ RUN ] NormalDistributionTest.Logical -17: [ OK ] NormalDistributionTest.Logical (1 ms) +17: [ OK ] NormalDistributionTest.Logical (0 ms) 17: [ RUN ] NormalDistributionTest.Reset 17: [ OK ] NormalDistributionTest.Reset (0 ms) 17: [ RUN ] NormalDistributionTest.AltParam 17: [ OK ] NormalDistributionTest.AltParam (0 ms) -17: [----------] 4 tests from NormalDistributionTest (1 ms total) +17: [----------] 4 tests from NormalDistributionTest (0 ms total) 17: 17: [----------] 1 test from SeedTest 17: [ RUN ] SeedTest.makeRandomSeed @@ -69100,7 +69132,7 @@ 17: [ RUN ] TabulatedNormalDistributionTest.Output14 17: [ OK ] TabulatedNormalDistributionTest.Output14 (0 ms) 17: [ RUN ] TabulatedNormalDistributionTest.Output16 -17: [ OK ] TabulatedNormalDistributionTest.Output16 (0 ms) +17: [ OK ] TabulatedNormalDistributionTest.Output16 (1 ms) 17: [ RUN ] TabulatedNormalDistributionTest.OutputDouble14 17: [ OK ] TabulatedNormalDistributionTest.OutputDouble14 (0 ms) 17: [ RUN ] TabulatedNormalDistributionTest.Logical @@ -69109,12 +69141,12 @@ 17: [ OK ] TabulatedNormalDistributionTest.Reset (0 ms) 17: [ RUN ] TabulatedNormalDistributionTest.AltParam 17: [ OK ] TabulatedNormalDistributionTest.AltParam (0 ms) -17: [----------] 6 tests from TabulatedNormalDistributionTest (0 ms total) +17: [----------] 6 tests from TabulatedNormalDistributionTest (1 ms total) 17: 17: [----------] 1 test from TabulatedNormalDistributionTableTest 17: [ RUN ] TabulatedNormalDistributionTableTest.HasValidProperties -17: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (3 ms) -17: [----------] 1 test from TabulatedNormalDistributionTableTest (3 ms total) +17: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (2 ms) +17: [----------] 1 test from TabulatedNormalDistributionTableTest (2 ms total) 17: 17: [----------] 6 tests from ThreeFry2x64Test 17: [ RUN ] ThreeFry2x64Test.Logical @@ -69126,10 +69158,10 @@ 17: [ RUN ] ThreeFry2x64Test.Discard 17: [ OK ] ThreeFry2x64Test.Discard (0 ms) 17: [ RUN ] ThreeFry2x64Test.InvalidCounter -17: [ OK ] ThreeFry2x64Test.InvalidCounter (0 ms) +17: [ OK ] ThreeFry2x64Test.InvalidCounter (1 ms) 17: [ RUN ] ThreeFry2x64Test.ExhaustInternalCounter 17: [ OK ] ThreeFry2x64Test.ExhaustInternalCounter (0 ms) -17: [----------] 6 tests from ThreeFry2x64Test (0 ms total) +17: [----------] 6 tests from ThreeFry2x64Test (1 ms total) 17: 17: [----------] 4 tests from UniformIntDistributionTest 17: [ RUN ] UniformIntDistributionTest.Output @@ -69140,7 +69172,7 @@ 17: [ OK ] UniformIntDistributionTest.Reset (0 ms) 17: [ RUN ] UniformIntDistributionTest.AltParam 17: [ OK ] UniformIntDistributionTest.AltParam (0 ms) -17: [----------] 4 tests from UniformIntDistributionTest (1 ms total) +17: [----------] 4 tests from UniformIntDistributionTest (0 ms total) 17: 17: [----------] 5 tests from UniformRealDistributionTest 17: [ RUN ] UniformRealDistributionTest.GenerateCanonical @@ -69159,7 +69191,7 @@ 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/0 17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/0 (0 ms) 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/1 -17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/1 (0 ms) +17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/1 (1 ms) 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/2 17: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/2 (0 ms) 17: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 @@ -69179,18 +69211,18 @@ 17: [----------] Global test environment tear-down 17: [==========] 44 tests from 10 test cases ran. (6 ms total) 17: [ PASSED ] 44 tests. -17/27 Test #17: RandomUnitTests .................. Passed 0.30 sec +17/27 Test #17: RandomUnitTests .................. Passed 0.19 sec test 18 Start 18: RestraintTests 18: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/restraintpotential-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/RestraintTests.xml" 18: Test timeout computed to be: 30 18: -------------------------------------------------------------------------- -18: [[28859,1],0]: A high-performance Open MPI point-to-point messaging module +18: [[58397,1],0]: A high-performance Open MPI point-to-point messaging module 18: was unable to find any relevant network interfaces: 18: 18: Module: OpenFabrics (openib) -18: Host: codethink13-arm64 +18: Host: i-capture-the-hostname 18: 18: Another transport will be used instead, although this may result in 18: lower performance. @@ -69208,18 +69240,18 @@ 18: [----------] Global test environment tear-down 18: [==========] 1 test from 1 test case ran. (0 ms total) 18: [ PASSED ] 1 test. -18/27 Test #18: RestraintTests ................... Passed 0.28 sec +18/27 Test #18: RestraintTests ................... Passed 0.16 sec test 19 Start 19: TableUnitTests 19: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/table-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/TableUnitTests.xml" 19: Test timeout computed to be: 30 19: -------------------------------------------------------------------------- -19: [[28895,1],0]: A high-performance Open MPI point-to-point messaging module +19: [[58423,1],0]: A high-performance Open MPI point-to-point messaging module 19: was unable to find any relevant network interfaces: 19: 19: Module: OpenFabrics (openib) -19: Host: codethink13-arm64 +19: Host: i-capture-the-hostname 19: 19: Another transport will be used instead, although this may result in 19: lower performance. @@ -69235,61 +69267,61 @@ 19: [ RUN ] SplineTableTest/0.Sinc 19: [ OK ] SplineTableTest/0.Sinc (1 ms) 19: [ RUN ] SplineTableTest/0.LJ12 -19: [ OK ] SplineTableTest/0.LJ12 (40 ms) +19: [ OK ] SplineTableTest/0.LJ12 (34 ms) 19: [ RUN ] SplineTableTest/0.PmeCorrection 19: [ OK ] SplineTableTest/0.PmeCorrection (2 ms) 19: [ RUN ] SplineTableTest/0.HandlesIncorrectNumericalInput 19: [ OK ] SplineTableTest/0.HandlesIncorrectNumericalInput (1 ms) 19: [ RUN ] SplineTableTest/0.NumericalInputPmeCorr -19: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (5 ms) +19: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (2 ms) 19: [ RUN ] SplineTableTest/0.TwoFunctions -19: [ OK ] SplineTableTest/0.TwoFunctions (67 ms) +19: [ OK ] SplineTableTest/0.TwoFunctions (65 ms) 19: [ RUN ] SplineTableTest/0.ThreeFunctions -19: [ OK ] SplineTableTest/0.ThreeFunctions (73 ms) +19: [ OK ] SplineTableTest/0.ThreeFunctions (70 ms) 19: [ RUN ] SplineTableTest/0.Simd 19: [ OK ] SplineTableTest/0.Simd (16 ms) 19: [ RUN ] SplineTableTest/0.SimdTwoFunctions -19: [ OK ] SplineTableTest/0.SimdTwoFunctions (66 ms) -19: [----------] 10 tests from SplineTableTest/0 (275 ms total) +19: [ OK ] SplineTableTest/0.SimdTwoFunctions (65 ms) +19: [----------] 10 tests from SplineTableTest/0 (259 ms total) 19: 19: [----------] 10 tests from SplineTableTest/1, where TypeParam = gmx::CubicSplineTable 19: [ RUN ] SplineTableTest/1.HandlesIncorrectInput -19: [ OK ] SplineTableTest/1.HandlesIncorrectInput (4 ms) +19: [ OK ] SplineTableTest/1.HandlesIncorrectInput (3 ms) 19: [ RUN ] SplineTableTest/1.Sinc -19: [ OK ] SplineTableTest/1.Sinc (2 ms) +19: [ OK ] SplineTableTest/1.Sinc (3 ms) 19: [ RUN ] SplineTableTest/1.LJ12 -19: [ OK ] SplineTableTest/1.LJ12 (86 ms) +19: [ OK ] SplineTableTest/1.LJ12 (84 ms) 19: [ RUN ] SplineTableTest/1.PmeCorrection -19: [ OK ] SplineTableTest/1.PmeCorrection (2 ms) +19: [ OK ] SplineTableTest/1.PmeCorrection (3 ms) 19: [ RUN ] SplineTableTest/1.HandlesIncorrectNumericalInput 19: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (1 ms) 19: [ RUN ] SplineTableTest/1.NumericalInputPmeCorr -19: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (2 ms) +19: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (1 ms) 19: [ RUN ] SplineTableTest/1.TwoFunctions -19: [ OK ] SplineTableTest/1.TwoFunctions (172 ms) +19: [ OK ] SplineTableTest/1.TwoFunctions (169 ms) 19: [ RUN ] SplineTableTest/1.ThreeFunctions -19: [ OK ] SplineTableTest/1.ThreeFunctions (179 ms) +19: [ OK ] SplineTableTest/1.ThreeFunctions (177 ms) 19: [ RUN ] SplineTableTest/1.Simd -19: [ OK ] SplineTableTest/1.Simd (41 ms) +19: [ OK ] SplineTableTest/1.Simd (40 ms) 19: [ RUN ] SplineTableTest/1.SimdTwoFunctions -19: [ OK ] SplineTableTest/1.SimdTwoFunctions (163 ms) -19: [----------] 10 tests from SplineTableTest/1 (653 ms total) +19: [ OK ] SplineTableTest/1.SimdTwoFunctions (161 ms) +19: [----------] 10 tests from SplineTableTest/1 (642 ms total) 19: 19: [----------] Global test environment tear-down -19: [==========] 20 tests from 2 test cases ran. (928 ms total) +19: [==========] 20 tests from 2 test cases ran. (901 ms total) 19: [ PASSED ] 20 tests. -19/27 Test #19: TableUnitTests ................... Passed 1.20 sec +19/27 Test #19: TableUnitTests ................... Passed 1.08 sec test 20 Start 20: TaskAssignmentUnitTests 20: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/taskassignment-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/TaskAssignmentUnitTests.xml" 20: Test timeout computed to be: 30 20: -------------------------------------------------------------------------- -20: [[28704,1],0]: A high-performance Open MPI point-to-point messaging module +20: [[57803,1],0]: A high-performance Open MPI point-to-point messaging module 20: was unable to find any relevant network interfaces: 20: 20: Module: OpenFabrics (openib) -20: Host: codethink13-arm64 +20: Host: i-capture-the-hostname 20: 20: Another transport will be used instead, although this may result in 20: lower performance. @@ -69301,28 +69333,28 @@ 20: [----------] Global test environment set-up. 20: [----------] 3 tests from GpuIdStringHandlingTest 20: [ RUN ] GpuIdStringHandlingTest.ParsingAndReconstructionWork -20: [ OK ] GpuIdStringHandlingTest.ParsingAndReconstructionWork (0 ms) +20: [ OK ] GpuIdStringHandlingTest.ParsingAndReconstructionWork (1 ms) 20: [ RUN ] GpuIdStringHandlingTest.EmptyStringCanBeValid 20: [ OK ] GpuIdStringHandlingTest.EmptyStringCanBeValid (0 ms) 20: [ RUN ] GpuIdStringHandlingTest.InvalidInputsThrow 20: [ OK ] GpuIdStringHandlingTest.InvalidInputsThrow (0 ms) -20: [----------] 3 tests from GpuIdStringHandlingTest (0 ms total) +20: [----------] 3 tests from GpuIdStringHandlingTest (1 ms total) 20: 20: [----------] Global test environment tear-down 20: [==========] 3 tests from 1 test case ran. (1 ms total) 20: [ PASSED ] 3 tests. -20/27 Test #20: TaskAssignmentUnitTests .......... Passed 0.25 sec +20/27 Test #20: TaskAssignmentUnitTests .......... Passed 0.17 sec test 21 Start 21: UtilityUnitTests 21: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/utility-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/UtilityUnitTests.xml" 21: Test timeout computed to be: 30 21: -------------------------------------------------------------------------- -21: [[28750,1],0]: A high-performance Open MPI point-to-point messaging module +21: [[57346,1],0]: A high-performance Open MPI point-to-point messaging module 21: was unable to find any relevant network interfaces: 21: 21: Module: OpenFabrics (openib) -21: Host: codethink13-arm64 +21: Host: i-capture-the-hostname 21: 21: Another transport will be used instead, although this may result in 21: lower performance. @@ -69336,14 +69368,14 @@ 21: [ RUN ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment 21: [ OK ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment -21: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (1 ms) +21: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment 21: [ OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/0.Move 21: [ OK ] AllocatorTest/0.Move (0 ms) 21: [ RUN ] AllocatorTest/0.StatelessAllocatorUsesNoMemory 21: [ OK ] AllocatorTest/0.StatelessAllocatorUsesNoMemory (0 ms) -21: [----------] 5 tests from AllocatorTest/0 (1 ms total) +21: [----------] 5 tests from AllocatorTest/0 (0 ms total) 21: 21: [----------] 5 tests from AllocatorTest/1, where TypeParam = gmx::Allocator 21: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment @@ -69388,14 +69420,14 @@ 21: [ RUN ] AllocatorTest/4.AllocatorAlignAllocatesWithAlignment 21: [ OK ] AllocatorTest/4.AllocatorAlignAllocatesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment -21: [ OK ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment (1 ms) +21: [ OK ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/4.VectorAllocatesAndReservesWithAlignment 21: [ OK ] AllocatorTest/4.VectorAllocatesAndReservesWithAlignment (0 ms) 21: [ RUN ] AllocatorTest/4.Move 21: [ OK ] AllocatorTest/4.Move (0 ms) 21: [ RUN ] AllocatorTest/4.StatelessAllocatorUsesNoMemory 21: [ OK ] AllocatorTest/4.StatelessAllocatorUsesNoMemory (0 ms) -21: [----------] 5 tests from AllocatorTest/4 (1 ms total) +21: [----------] 5 tests from AllocatorTest/4 (0 ms total) 21: 21: [----------] 5 tests from AllocatorTest/5, where TypeParam = gmx::Allocator, gmx::PageAlignedAllocationPolicy> 21: [ RUN ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment @@ -69454,7 +69486,7 @@ 21: [ RUN ] ArrayRefTest/1.ConstructWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/1.ConstructWithTemplateConstructorWorks (0 ms) 21: [ RUN ] ArrayRefTest/1.ConstructWithNonConstTemplateConstructorWorks -21: [ OK ] ArrayRefTest/1.ConstructWithNonConstTemplateConstructorWorks (1 ms) +21: [ OK ] ArrayRefTest/1.ConstructWithNonConstTemplateConstructorWorks (0 ms) 21: [ RUN ] ArrayRefTest/1.ConstructFromPointersWorks 21: [ OK ] ArrayRefTest/1.ConstructFromPointersWorks (0 ms) 21: [ RUN ] ArrayRefTest/1.ConstructFromNonConstPointersWorks @@ -69465,7 +69497,7 @@ 21: [ OK ] ArrayRefTest/1.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/1.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/1.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/1 (1 ms total) +21: [----------] 9 tests from ArrayRefTest/1 (0 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/2, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/2.MakeWithAssignmentWorks @@ -69780,7 +69812,7 @@ 21: [ OK ] ArrayRefTest/16.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/16.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/16.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/16 (0 ms total) +21: [----------] 9 tests from ArrayRefTest/16 (1 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/17, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/17.MakeWithAssignmentWorks @@ -69801,7 +69833,7 @@ 21: [ OK ] ArrayRefTest/17.ConstructFromNonConstVectorWorks (0 ms) 21: [ RUN ] ArrayRefTest/17.ConstructFromStructFieldWithTemplateConstructorWorks 21: [ OK ] ArrayRefTest/17.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -21: [----------] 9 tests from ArrayRefTest/17 (1 ms total) +21: [----------] 9 tests from ArrayRefTest/17 (0 ms total) 21: 21: [----------] 9 tests from ArrayRefTest/18, where TypeParam = gmx::ArrayRef 21: [ RUN ] ArrayRefTest/18.MakeWithAssignmentWorks @@ -69851,9 +69883,9 @@ 21: [ RUN ] KeyValueTreeSerializerTest.SimpleObject 21: [ OK ] KeyValueTreeSerializerTest.SimpleObject (0 ms) 21: [ RUN ] KeyValueTreeSerializerTest.ObjectWithArrays -21: [ OK ] KeyValueTreeSerializerTest.ObjectWithArrays (0 ms) +21: [ OK ] KeyValueTreeSerializerTest.ObjectWithArrays (1 ms) 21: [ RUN ] KeyValueTreeSerializerTest.ObjectWithObjects -21: [ OK ] KeyValueTreeSerializerTest.ObjectWithObjects (1 ms) +21: [ OK ] KeyValueTreeSerializerTest.ObjectWithObjects (0 ms) 21: [----------] 4 tests from KeyValueTreeSerializerTest (1 ms total) 21: 21: [----------] 6 tests from TreeValueTransformTest @@ -69864,9 +69896,9 @@ 21: [ RUN ] TreeValueTransformTest.SimpleTransformsToObject 21: [ OK ] TreeValueTransformTest.SimpleTransformsToObject (0 ms) 21: [ RUN ] TreeValueTransformTest.ObjectFromString -21: [ OK ] TreeValueTransformTest.ObjectFromString (0 ms) +21: [ OK ] TreeValueTransformTest.ObjectFromString (1 ms) 21: [ RUN ] TreeValueTransformTest.ObjectFromMultipleStrings -21: [ OK ] TreeValueTransformTest.ObjectFromMultipleStrings (1 ms) +21: [ OK ] TreeValueTransformTest.ObjectFromMultipleStrings (0 ms) 21: [ RUN ] TreeValueTransformTest.ScopedTransformRules 21: [ OK ] TreeValueTransformTest.ScopedTransformRules (0 ms) 21: [----------] 6 tests from TreeValueTransformTest (1 ms total) @@ -69878,7 +69910,7 @@ 21: 21: [----------] 2 tests from RegexBasicTest 21: [ RUN ] RegexBasicTest.BasicMatchesWorkWhenSupported -21: [ OK ] RegexBasicTest.BasicMatchesWorkWhenSupported (0 ms) +21: [ OK ] RegexBasicTest.BasicMatchesWorkWhenSupported (1 ms) 21: [ RUN ] RegexBasicTest.MatchesForCharacterClassesWorkWhenSupported 21: [ OK ] RegexBasicTest.MatchesForCharacterClassesWorkWhenSupported (0 ms) 21: [----------] 2 tests from RegexBasicTest (1 ms total) @@ -69909,12 +69941,12 @@ 21: 21: [----------] 3 tests from MutexTaskTest 21: [ RUN ] MutexTaskTest.MutualExclusionWorksWithLock -21: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (6 ms) +21: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (0 ms) 21: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread -21: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (4 ms) +21: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (0 ms) 21: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread 21: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread (0 ms) -21: [----------] 3 tests from MutexTaskTest (10 ms total) +21: [----------] 3 tests from MutexTaskTest (0 ms total) 21: 21: [----------] 4 tests from PathTest 21: [ RUN ] PathTest.StripSourcePrefixWorks @@ -69925,14 +69957,14 @@ 21: [ OK ] PathTest.GetParentPathWorks (0 ms) 21: [ RUN ] PathTest.GetParentPathAndBasenameWorks 21: [ OK ] PathTest.GetParentPathAndBasenameWorks (0 ms) -21: [----------] 4 tests from PathTest (0 ms total) +21: [----------] 4 tests from PathTest (1 ms total) 21: 21: [----------] 2 tests from PhysicalNodeCommunicatorTest 21: [ RUN ] PhysicalNodeCommunicatorTest.CanConstruct -21: [ OK ] PhysicalNodeCommunicatorTest.CanConstruct (1 ms) +21: [ OK ] PhysicalNodeCommunicatorTest.CanConstruct (0 ms) 21: [ RUN ] PhysicalNodeCommunicatorTest.CanCallBarrier 21: [ OK ] PhysicalNodeCommunicatorTest.CanCallBarrier (0 ms) -21: [----------] 2 tests from PhysicalNodeCommunicatorTest (1 ms total) +21: [----------] 2 tests from PhysicalNodeCommunicatorTest (0 ms total) 21: 21: [----------] 7 tests from StringUtilityTest 21: [ RUN ] StringUtilityTest.StartsWith @@ -69977,9 +70009,9 @@ 21: [ RUN ] ReplaceAllTest.HandlesEmptyStrings 21: [ OK ] ReplaceAllTest.HandlesEmptyStrings (0 ms) 21: [ RUN ] ReplaceAllTest.HandlesNoMatches -21: [ OK ] ReplaceAllTest.HandlesNoMatches (0 ms) +21: [ OK ] ReplaceAllTest.HandlesNoMatches (1 ms) 21: [ RUN ] ReplaceAllTest.HandlesMatchesAtEnds -21: [ OK ] ReplaceAllTest.HandlesMatchesAtEnds (1 ms) +21: [ OK ] ReplaceAllTest.HandlesMatchesAtEnds (0 ms) 21: [ RUN ] ReplaceAllTest.HandlesMultipleMatches 21: [ OK ] ReplaceAllTest.HandlesMultipleMatches (0 ms) 21: [ RUN ] ReplaceAllTest.HandlesWordBoundaries @@ -70006,9 +70038,9 @@ 21: [ RUN ] TextLineWrapperTest.HandlesHangingIndent 21: [ OK ] TextLineWrapperTest.HandlesHangingIndent (0 ms) 21: [ RUN ] TextLineWrapperTest.HandlesContinuationCharacter -21: [ OK ] TextLineWrapperTest.HandlesContinuationCharacter (1 ms) +21: [ OK ] TextLineWrapperTest.HandlesContinuationCharacter (0 ms) 21: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace -21: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace (0 ms) +21: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace (1 ms) 21: [----------] 10 tests from TextLineWrapperTest (1 ms total) 21: 21: [----------] 6 tests from TextWriterTest @@ -70044,7 +70076,7 @@ 21: [ OK ] BitmaskTest32_11/BitmaskTest32.Union/0 (0 ms) 21: [ RUN ] BitmaskTest32_11/BitmaskTest32.ToHex/0 21: [ OK ] BitmaskTest32_11/BitmaskTest32.ToHex/0 (0 ms) -21: [----------] 6 tests from BitmaskTest32_11/BitmaskTest32 (1 ms total) +21: [----------] 6 tests from BitmaskTest32_11/BitmaskTest32 (0 ms total) 21: 21: [----------] 12 tests from BitmaskTest64_10_42/BitmaskTest64 21: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/0 @@ -70098,7 +70130,7 @@ 21: [ OK ] BitmaskTest128_9_78/BitmaskTest128.ToHex/0 (0 ms) 21: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.ToHex/1 21: [ OK ] BitmaskTest128_9_78/BitmaskTest128.ToHex/1 (0 ms) -21: [----------] 12 tests from BitmaskTest128_9_78/BitmaskTest128 (0 ms total) +21: [----------] 12 tests from BitmaskTest128_9_78/BitmaskTest128 (1 ms total) 21: 21: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 @@ -70110,7 +70142,7 @@ 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 (0 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 -21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (1 ms) +21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (0 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 (0 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 @@ -70119,11 +70151,11 @@ 21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 (0 ms) 21: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 21: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 (0 ms) -21: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (1 ms total) +21: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (0 ms total) 21: 21: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest 21: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 -21: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 (0 ms) +21: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 (1 ms) 21: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/1 21: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/1 (0 ms) 21: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/2 @@ -70136,23 +70168,23 @@ 21: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5 (0 ms) 21: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6 21: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6 (0 ms) -21: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest (0 ms total) +21: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest (1 ms total) 21: 21: [----------] Global test environment tear-down -21: [==========] 325 tests from 52 test cases ran. (24 ms total) +21: [==========] 325 tests from 52 test cases ran. (13 ms total) 21: [ PASSED ] 325 tests. -21/27 Test #21: UtilityUnitTests ................. Passed 0.33 sec +21/27 Test #21: UtilityUnitTests ................. Passed 0.20 sec test 22 Start 22: UtilityMpiUnitTests 22: Test command: /usr/bin/mpiexec.openmpi "-np" "4" "/build/gromacs-2019.1/build/openmpi-dp/bin/utility-mpi-test" "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/UtilityMpiUnitTests.xml" 22: Test timeout computed to be: 30 22: -------------------------------------------------------------------------- -22: [[28772,1],0]: A high-performance Open MPI point-to-point messaging module +22: [[58182,1],0]: A high-performance Open MPI point-to-point messaging module 22: was unable to find any relevant network interfaces: 22: 22: Module: OpenFabrics (openib) -22: Host: codethink13-arm64 +22: Host: i-capture-the-hostname 22: 22: Another transport will be used instead, although this may result in 22: lower performance. @@ -70164,28 +70196,28 @@ 22: [----------] Global test environment set-up. 22: [----------] 2 tests from PhysicalNodeCommunicatorTest 22: [ RUN ] PhysicalNodeCommunicatorTest.CanConstruct -22: [ OK ] PhysicalNodeCommunicatorTest.CanConstruct (61 ms) +22: [ OK ] PhysicalNodeCommunicatorTest.CanConstruct (0 ms) 22: [ RUN ] PhysicalNodeCommunicatorTest.CanCallBarrier -22: [ OK ] PhysicalNodeCommunicatorTest.CanCallBarrier (48 ms) -22: [----------] 2 tests from PhysicalNodeCommunicatorTest (133 ms total) +22: [ OK ] PhysicalNodeCommunicatorTest.CanCallBarrier (0 ms) +22: [----------] 2 tests from PhysicalNodeCommunicatorTest (0 ms total) 22: 22: [----------] Global test environment tear-down -22: [==========] 2 tests from 1 test case ran. (133 ms total) +22: [==========] 2 tests from 1 test case ran. (1 ms total) 22: [ PASSED ] 2 tests. -22: [codethink13-arm64:22253] 3 more processes have sent help message help-mpi-btl-base.txt / btl:no-nics -22: [codethink13-arm64:22253] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages -22/27 Test #22: UtilityMpiUnitTests .............. Passed 0.65 sec +22: [i-capture-the-hostname:28183] 3 more processes have sent help message help-mpi-btl-base.txt / btl:no-nics +22: [i-capture-the-hostname:28183] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages +22/27 Test #22: UtilityMpiUnitTests .............. Passed 0.22 sec test 23 Start 23: FileIOTests 23: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/fileio-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/FileIOTests.xml" 23: Test timeout computed to be: 30 23: -------------------------------------------------------------------------- -23: [[29106,1],0]: A high-performance Open MPI point-to-point messaging module +23: [[58281,1],0]: A high-performance Open MPI point-to-point messaging module 23: was unable to find any relevant network interfaces: 23: 23: Module: OpenFabrics (openib) -23: Host: codethink13-arm64 +23: Host: i-capture-the-hostname 23: 23: Another transport will be used instead, although this may result in 23: lower performance. @@ -70257,35 +70289,35 @@ 23: [ RUN ] TngTest.CanOpenTngFile 23: [ OK ] TngTest.CanOpenTngFile (0 ms) 23: [ RUN ] TngTest.CloseBeforeOpenIsNotFatal -23: [ OK ] TngTest.CloseBeforeOpenIsNotFatal (0 ms) -23: [----------] 2 tests from TngTest (0 ms total) +23: [ OK ] TngTest.CloseBeforeOpenIsNotFatal (1 ms) +23: [----------] 2 tests from TngTest (1 ms total) 23: 23: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 -23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 (1 ms) +23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 (0 ms) 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (1 ms) 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 -23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (4 ms) +23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (3 ms) 23: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 -23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (0 ms) -23: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (6 ms total) +23: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (1 ms) +23: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (5 ms total) 23: 23: [----------] Global test environment tear-down -23: [==========] 17 tests from 4 test cases ran. (8 ms total) +23: [==========] 17 tests from 4 test cases ran. (7 ms total) 23: [ PASSED ] 17 tests. -23/27 Test #23: FileIOTests ...................... Passed 0.30 sec +23/27 Test #23: FileIOTests ...................... Passed 0.18 sec test 24 Start 24: PullTest 24: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/pull-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/PullTest.xml" 24: Test timeout computed to be: 30 24: -------------------------------------------------------------------------- -24: [[29150,1],0]: A high-performance Open MPI point-to-point messaging module +24: [[58088,1],0]: A high-performance Open MPI point-to-point messaging module 24: was unable to find any relevant network interfaces: 24: 24: Module: OpenFabrics (openib) -24: Host: codethink13-arm64 +24: Host: i-capture-the-hostname 24: 24: Another transport will be used instead, although this may result in 24: lower performance. @@ -70311,18 +70343,18 @@ 24: [----------] Global test environment tear-down 24: [==========] 5 tests from 1 test case ran. (0 ms total) 24: [ PASSED ] 5 tests. -24/27 Test #24: PullTest ......................... Passed 0.24 sec +24/27 Test #24: PullTest ......................... Passed 0.17 sec test 25 Start 25: AwhTest 25: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/awh-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/AwhTest.xml" 25: Test timeout computed to be: 30 25: -------------------------------------------------------------------------- -25: [[29169,1],0]: A high-performance Open MPI point-to-point messaging module +25: [[64821,1],0]: A high-performance Open MPI point-to-point messaging module 25: was unable to find any relevant network interfaces: 25: 25: Module: OpenFabrics (openib) -25: Host: codethink13-arm64 +25: Host: i-capture-the-hostname 25: 25: Another transport will be used instead, although this may result in 25: lower performance. @@ -70339,12 +70371,12 @@ 25: 25: [----------] 1 test from gridTest 25: [ RUN ] gridTest.neighborhood -25: [ OK ] gridTest.neighborhood (2 ms) -25: [----------] 1 test from gridTest (2 ms total) +25: [ OK ] gridTest.neighborhood (1 ms) +25: [----------] 1 test from gridTest (1 ms total) 25: 25: [----------] 8 tests from WithParameters/BiasTest 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/0 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (0 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (1 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/1 25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/1 (0 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/2 @@ -70352,7 +70384,7 @@ 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/3 25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (0 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/4 -25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/4 (1 ms) +25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/4 (0 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/5 25: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/5 (1 ms) 25: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/6 @@ -70369,20 +70401,20 @@ 25: [----------] 2 tests from WithParameters/BiasStateTest (1 ms total) 25: 25: [----------] Global test environment tear-down -25: [==========] 12 tests from 4 test cases ran. (9 ms total) +25: [==========] 12 tests from 4 test cases ran. (8 ms total) 25: [ PASSED ] 12 tests. -25/27 Test #25: AwhTest .......................... Passed 0.27 sec +25/27 Test #25: AwhTest .......................... Passed 0.18 sec test 26 Start 26: SimdUnitTests 26: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/simd-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/SimdUnitTests.xml" 26: Test timeout computed to be: 30 26: -------------------------------------------------------------------------- -26: [[28951,1],0]: A high-performance Open MPI point-to-point messaging module +26: [[64979,1],0]: A high-performance Open MPI point-to-point messaging module 26: was unable to find any relevant network interfaces: 26: 26: Module: OpenFabrics (openib) -26: Host: codethink13-arm64 +26: Host: i-capture-the-hostname 26: 26: Another transport will be used instead, although this may result in 26: lower performance. @@ -70497,7 +70529,7 @@ 26: [ OK ] SimdFloatingpointTest.cvtFloat2Double (0 ms) 26: [ RUN ] SimdFloatingpointTest.cvtDouble2Float 26: [ OK ] SimdFloatingpointTest.cvtDouble2Float (0 ms) -26: [----------] 42 tests from SimdFloatingpointTest (0 ms total) +26: [----------] 42 tests from SimdFloatingpointTest (1 ms total) 26: 26: [----------] 13 tests from SimdFloatingpointUtilTest 26: [ RUN ] SimdFloatingpointUtilTest.gatherLoadTranspose4 @@ -70547,25 +70579,25 @@ 26: [ RUN ] SimdMathTest.invsqrtPair 26: [ OK ] SimdMathTest.invsqrtPair (2 ms) 26: [ RUN ] SimdMathTest.sqrt -26: [ OK ] SimdMathTest.sqrt (2 ms) +26: [ OK ] SimdMathTest.sqrt (1 ms) 26: [ RUN ] SimdMathTest.sqrtUnsafe 26: [ OK ] SimdMathTest.sqrtUnsafe (1 ms) 26: [ RUN ] SimdMathTest.inv -26: [ OK ] SimdMathTest.inv (1 ms) +26: [ OK ] SimdMathTest.inv (2 ms) 26: [ RUN ] SimdMathTest.maskzInv 26: [ OK ] SimdMathTest.maskzInv (0 ms) 26: [ RUN ] SimdMathTest.log -26: [ OK ] SimdMathTest.log (2 ms) +26: [ OK ] SimdMathTest.log (1 ms) 26: [ RUN ] SimdMathTest.exp2 26: [ OK ] SimdMathTest.exp2 (3 ms) 26: [ RUN ] SimdMathTest.exp2Unsafe -26: [ OK ] SimdMathTest.exp2Unsafe (5 ms) +26: [ OK ] SimdMathTest.exp2Unsafe (2 ms) 26: [ RUN ] SimdMathTest.exp 26: [ OK ] SimdMathTest.exp (3 ms) 26: [ RUN ] SimdMathTest.expUnsafe -26: [ OK ] SimdMathTest.expUnsafe (1 ms) +26: [ OK ] SimdMathTest.expUnsafe (2 ms) 26: [ RUN ] SimdMathTest.erf -26: [ OK ] SimdMathTest.erf (2 ms) +26: [ OK ] SimdMathTest.erf (1 ms) 26: [ RUN ] SimdMathTest.erfc 26: [ OK ] SimdMathTest.erfc (2 ms) 26: [ RUN ] SimdMathTest.sin @@ -70575,15 +70607,15 @@ 26: [ RUN ] SimdMathTest.tan 26: [ OK ] SimdMathTest.tan (7 ms) 26: [ RUN ] SimdMathTest.asin -26: [ OK ] SimdMathTest.asin (6 ms) +26: [ OK ] SimdMathTest.asin (1 ms) 26: [ RUN ] SimdMathTest.acos 26: [ OK ] SimdMathTest.acos (1 ms) 26: [ RUN ] SimdMathTest.atan -26: [ OK ] SimdMathTest.atan (1 ms) +26: [ OK ] SimdMathTest.atan (2 ms) 26: [ RUN ] SimdMathTest.atan2 26: [ OK ] SimdMathTest.atan2 (0 ms) 26: [ RUN ] SimdMathTest.pmeForceCorrection -26: [ OK ] SimdMathTest.pmeForceCorrection (3 ms) +26: [ OK ] SimdMathTest.pmeForceCorrection (2 ms) 26: [ RUN ] SimdMathTest.pmePotentialCorrection 26: [ OK ] SimdMathTest.pmePotentialCorrection (2 ms) 26: [ RUN ] SimdMathTest.invsqrtSingleAccuracy @@ -70611,7 +70643,7 @@ 26: [ RUN ] SimdMathTest.erfcSingleAccuracy 26: [ OK ] SimdMathTest.erfcSingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.sinSingleAccuracy -26: [ OK ] SimdMathTest.sinSingleAccuracy (3 ms) +26: [ OK ] SimdMathTest.sinSingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.cosSingleAccuracy 26: [ OK ] SimdMathTest.cosSingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.tanSingleAccuracy @@ -70619,16 +70651,16 @@ 26: [ RUN ] SimdMathTest.asinSingleAccuracy 26: [ OK ] SimdMathTest.asinSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.acosSingleAccuracy -26: [ OK ] SimdMathTest.acosSingleAccuracy (2 ms) +26: [ OK ] SimdMathTest.acosSingleAccuracy (1 ms) 26: [ RUN ] SimdMathTest.atanSingleAccuracy -26: [ OK ] SimdMathTest.atanSingleAccuracy (1 ms) +26: [ OK ] SimdMathTest.atanSingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.atan2SingleAccuracy 26: [ OK ] SimdMathTest.atan2SingleAccuracy (0 ms) 26: [ RUN ] SimdMathTest.pmeForceCorrectionSingleAccuracy 26: [ OK ] SimdMathTest.pmeForceCorrectionSingleAccuracy (2 ms) 26: [ RUN ] SimdMathTest.pmePotentialCorrectionSingleAccuracy 26: [ OK ] SimdMathTest.pmePotentialCorrectionSingleAccuracy (2 ms) -26: [----------] 45 tests from SimdMathTest (90 ms total) +26: [----------] 45 tests from SimdMathTest (79 ms total) 26: 26: [----------] 1 test from EmptyArrayRefTest 26: [ RUN ] EmptyArrayRefTest.IsEmpty @@ -70674,7 +70706,7 @@ 26: [----------] 1 test from ArrayRefReadWriteTest/0, where TypeParam = gmx::ArrayRef 26: [ RUN ] ArrayRefReadWriteTest/0.Assignment 26: [ OK ] ArrayRefReadWriteTest/0.Assignment (0 ms) -26: [----------] 1 test from ArrayRefReadWriteTest/0 (1 ms total) +26: [----------] 1 test from ArrayRefReadWriteTest/0 (0 ms total) 26: 26: [----------] 1 test from ArrayRefReadWriteTest/1, where TypeParam = gmx::ArrayRef 26: [ RUN ] ArrayRefReadWriteTest/1.Assignment @@ -70738,7 +70770,7 @@ 26: [ OK ] SimdIntegerTest.cvtB2IB (0 ms) 26: [ RUN ] SimdIntegerTest.cvtIB2B 26: [ OK ] SimdIntegerTest.cvtIB2B (0 ms) -26: [----------] 23 tests from SimdIntegerTest (0 ms total) +26: [----------] 23 tests from SimdIntegerTest (1 ms total) 26: 26: [----------] 41 tests from SimdScalarTest 26: [ RUN ] SimdScalarTest.load @@ -70842,7 +70874,7 @@ 26: [ OK ] SimdScalarUtilTest.gatherLoadUBySimdIntTranspose (0 ms) 26: [ RUN ] SimdScalarUtilTest.reduceIncr4ReturnSum 26: [ OK ] SimdScalarUtilTest.reduceIncr4ReturnSum (0 ms) -26: [----------] 8 tests from SimdScalarUtilTest (1 ms total) +26: [----------] 8 tests from SimdScalarUtilTest (0 ms total) 26: 26: [----------] 37 tests from SimdScalarMathTest 26: [ RUN ] SimdScalarMathTest.copysign @@ -70919,23 +70951,23 @@ 26: [ OK ] SimdScalarMathTest.pmeForceCorrectionSingleAccuracy (0 ms) 26: [ RUN ] SimdScalarMathTest.pmePotentialCorrectionSingleAccuracy 26: [ OK ] SimdScalarMathTest.pmePotentialCorrectionSingleAccuracy (0 ms) -26: [----------] 37 tests from SimdScalarMathTest (0 ms total) +26: [----------] 37 tests from SimdScalarMathTest (1 ms total) 26: 26: [----------] Global test environment tear-down -26: [==========] 236 tests from 19 test cases ran. (93 ms total) +26: [==========] 236 tests from 19 test cases ran. (82 ms total) 26: [ PASSED ] 236 tests. -26/27 Test #26: SimdUnitTests .................... Passed 0.38 sec +26/27 Test #26: SimdUnitTests .................... Passed 0.26 sec test 27 Start 27: CompatibilityHelpersTests 27: Test command: /build/gromacs-2019.1/build/openmpi-dp/bin/compat-test "--gtest_output=xml:/build/gromacs-2019.1/build/openmpi-dp/Testing/Temporary/CompatibilityHelpersTests.xml" 27: Test timeout computed to be: 30 27: -------------------------------------------------------------------------- -27: [[29005,1],0]: A high-performance Open MPI point-to-point messaging module +27: [[64973,1],0]: A high-performance Open MPI point-to-point messaging module 27: was unable to find any relevant network interfaces: 27: 27: Module: OpenFabrics (openib) -27: Host: codethink13-arm64 +27: Host: i-capture-the-hostname 27: 27: Another transport will be used instead, although this may result in 27: lower performance. @@ -70953,7 +70985,7 @@ 27: [----------] 1 test from NotNullConstruction 27: [ RUN ] NotNullConstruction.Works 27: [ OK ] NotNullConstruction.Works (0 ms) -27: [----------] 1 test from NotNullConstruction (1 ms total) +27: [----------] 1 test from NotNullConstruction (0 ms total) 27: 27: [----------] 1 test from NotNullCasting 27: [ RUN ] NotNullCasting.Works @@ -70978,16 +71010,16 @@ 27: [----------] Global test environment tear-down 27: [==========] 6 tests from 6 test cases ran. (1 ms total) 27: [ PASSED ] 6 tests. -27/27 Test #27: CompatibilityHelpersTests ........ Passed 0.27 sec +27/27 Test #27: CompatibilityHelpersTests ........ Passed 0.18 sec 100% tests passed, 0 tests failed out of 27 Label Time Summary: -GTest = 10.25 sec*proc (27 tests) -MpiTest = 1.80 sec*proc (3 tests) -UnitTest = 10.25 sec*proc (27 tests) +GTest = 6.39 sec*proc (27 tests) +MpiTest = 0.67 sec*proc (3 tests) +UnitTest = 6.39 sec*proc (27 tests) -Total Test time (real) = 10.66 sec +Total Test time (real) = 6.70 sec touch build-openmpi dh_testdir # Build speedy, stripped-down version just for documentation generation. @@ -71241,104 +71273,108 @@ make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/gromacs /build/gromacs-2019.1/build/documentation/src/gromacs/CMakeFiles/tng_io_zlib.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/gromacs /build/gromacs-2019.1/build/documentation/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/gromacs /build/gromacs-2019.1/build/documentation/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/programs /build/gromacs-2019.1/build/documentation/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/gromacs /build/gromacs-2019.1/build/documentation/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= -Scanning dependencies of target view_objlib Scanning dependencies of target lmfit_objlib -make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -cd /build/gromacs-2019.1/build/documentation/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -o CMakeFiles/view_objlib.dir/view/view.cpp.o -c /build/gromacs-2019.1/src/programs/view/view.cpp +cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/programs /build/gromacs-2019.1/build/documentation/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/gromacs-2019.1/src/external/lmfit/lmmin.cpp Scanning dependencies of target tng_io_zlib -Scanning dependencies of target mdrun_objlib -make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_zlib.dir/build.make src/gromacs/CMakeFiles/tng_io_zlib.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -cd /build/gromacs-2019.1/build/documentation/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/mdrun.cpp -make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/adler32.c.o -c /build/gromacs-2019.1/src/external/tng_io/external/zlib/adler32.c +Scanning dependencies of target mdrun_objlib +make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/compress.c.o -c /build/gromacs-2019.1/src/external/tng_io/external/zlib/compress.c Scanning dependencies of target tng_io_obj make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' +cd /build/gromacs-2019.1/build/documentation/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/gromacs-2019.1/src/programs/mdrun/mdrun.cpp +make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/documentation/tng/include -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/bwlzh.c -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/documentation/tng/include -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/bwt.c +Scanning dependencies of target view_objlib +make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' +cd /build/gromacs-2019.1/build/documentation/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -o CMakeFiles/view_objlib.dir/view/view.cpp.o -c /build/gromacs-2019.1/src/programs/view/view.cpp Scanning dependencies of target libgromacs_external make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/eigensolver.cpp +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/crc32.c.o -c /build/gromacs-2019.1/src/external/tng_io/external/zlib/crc32.c +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/deflate.c.o -c /build/gromacs-2019.1/src/external/tng_io/external/zlib/deflate.c +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/inffast.c.o -c /build/gromacs-2019.1/src/external/tng_io/external/zlib/inffast.c Scanning dependencies of target libgromacs_generated -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/compress.c.o -c /build/gromacs-2019.1/src/external/tng_io/external/zlib/compress.c make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/inflate.c.o -c /build/gromacs-2019.1/src/external/tng_io/external/zlib/inflate.c make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/crc32.c.o -c /build/gromacs-2019.1/src/external/tng_io/external/zlib/crc32.c +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/documentation/tng/include -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/bwt.c cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/documentation/tng/include -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/coder.c -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/deflate.c.o -c /build/gromacs-2019.1/src/external/tng_io/external/zlib/deflate.c +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/gmx_arpack.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +[ 0%] Built target view_objlib +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/matrix.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/documentation/tng/include -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/dict.c cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/documentation/tng/include -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/fixpoint.c -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/gmx_arpack.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/documentation/tng/include -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/huffman.c -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/documentation/tng/include -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/huffmem.c +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -[ 0%] Built target view_objlib +[ 0%] Built target lmfit_objlib +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/inftrees.c.o -c /build/gromacs-2019.1/src/external/tng_io/external/zlib/inftrees.c +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/documentation/tng/include -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/huffmem.c +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/trees.c.o -c /build/gromacs-2019.1/src/external/tng_io/external/zlib/trees.c +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/uncompr.c.o -c /build/gromacs-2019.1/src/external/tng_io/external/zlib/uncompr.c +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/zutil.c.o -c /build/gromacs-2019.1/src/external/tng_io/external/zlib/zutil.c cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/documentation/tng/include -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/lz77.c -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o -c /build/gromacs-2019.1/src/gromacs/linearalgebra/nrjac.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/documentation/tng/include -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/merge_sort.c cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/documentation/tng/include -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/mtf.c cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/documentation/tng/include -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/rle.c cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/documentation/tng/include -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/tng_compress.c -make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/documentation/tng/include -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/vals16.c -[ 0%] Built target lmfit_objlib cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/documentation/tng/include -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/warnmalloc.c +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/documentation/tng/include -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/widemuldiv.c +make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +[ 0%] Built target tng_io_zlib +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/documentation/tng/include -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/xtc2.c -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/documentation/tng/include -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/xtc3.c -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/documentation/tng/include -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/inffast.c.o -c /build/gromacs-2019.1/src/external/tng_io/external/zlib/inffast.c -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/inflate.c.o -c /build/gromacs-2019.1/src/external/tng_io/external/zlib/inflate.c -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/lib/md5.c -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/inftrees.c.o -c /build/gromacs-2019.1/src/external/tng_io/external/zlib/inftrees.c -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 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/build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/trees.c.o -c /build/gromacs-2019.1/src/external/tng_io/external/zlib/trees.c -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 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-Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/tmpi_malloc.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/atomic.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/lock.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/pthreads.cpp +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/documentation/tng/include -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/compression/xtc3.c cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/system_error.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/alltoall.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/alltoall.cpp -[ 0%] Built target tng_io_zlib +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/documentation/tng/include -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/p2p_protocol.cpp -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/barrier.cpp.o -c 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/build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/reduce.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/reduce.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/event.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/event.cpp +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 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-DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -I/build/gromacs-2019.1/src/external/tng_io/include -I/build/gromacs-2019.1/build/documentation/tng/include -I/build/gromacs-2019.1/src/external/tng_io/external/zlib -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /build/gromacs-2019.1/src/external/tng_io/src/lib/md5.c +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/scatter.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/scatter.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/group.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/group.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_init.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/tmpi_init.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/topology.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/topology.cpp +cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 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CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/list.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/list.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem 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/build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/numa_malloc.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/numa_malloc.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/once.cpp.o -c /build/gromacs-2019.1/src/external/thread_mpi/src/once.cpp -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -[ 2%] Built target libgromacs_external -cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp @@ -71376,6 +71406,8 @@ cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +[ 2%] Built target libgromacs_external cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp @@ -71387,18 +71419,6 @@ cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp -/build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c: In function 'tng_time_get_str': -/build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c:15188:24: warning: '%02d' directive output may be truncated writing between 2 and 11 bytes into a region of size between 0 and 16 [-Wformat-truncation=] - "%4d-%02d-%02d %02d:%02d:%02d", - ^~~~ -In file included from /usr/include/stdio.h:873, - from /build/gromacs-2019.1/src/external/tng_io/include/tng/tng_io.h:308, - from /build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c:20: -/usr/include/aarch64-linux-gnu/bits/stdio2.h:67:10: note: '__builtin___snprintf_chk' output between 20 and 72 bytes into a destination of size 24 - return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - __bos (__s), __fmt, __va_arg_pack ()); - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp @@ -71413,14 +71433,24 @@ cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp -make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -[ 5%] Built target tng_io_obj cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp +/build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c: In function 'tng_time_get_str': +/build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c:15188:24: warning: '%02d' directive output may be truncated writing between 2 and 11 bytes into a region of size between 0 and 16 [-Wformat-truncation=] + "%4d-%02d-%02d %02d:%02d:%02d", + ^~~~ +In file included from /usr/include/stdio.h:873, + from /build/gromacs-2019.1/src/external/tng_io/include/tng/tng_io.h:308, + from /build/gromacs-2019.1/src/external/tng_io/src/lib/tng_io.c:20: +/usr/include/aarch64-linux-gnu/bits/stdio2.h:67:10: note: '__builtin___snprintf_chk' output between 20 and 72 bytes into a destination of size 24 + return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + __bos (__s), __fmt, __va_arg_pack ()); + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp @@ -71433,6 +71463,8 @@ cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp +make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +[ 5%] Built target tng_io_obj cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp cd /build/gromacs-2019.1/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2019.1/build/documentation/src -I/build/gromacs-2019.1/src -isystem /build/gromacs-2019.1/src/external/thread_mpi/include -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-unknown-pragmas -g -fno-inline -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o -c /build/gromacs-2019.1/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp @@ -72321,132 +72353,140 @@ /usr/bin/make -f CMakeFiles/Makefile2 docs/CMakeFiles/webpage.dir/all make[3]: Entering directory '/build/gromacs-2019.1/build/documentation' /usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-source-timestamp.dir/build.make docs/doxygen/CMakeFiles/doxygen-source-timestamp.dir/depend +/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-version.dir/build.make docs/doxygen/CMakeFiles/doxygen-version.dir/depend +/usr/bin/make -f docs/CMakeFiles/sphinx-image-conversion.dir/build.make docs/CMakeFiles/sphinx-image-conversion.dir/depend +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/docs/doxygen /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/docs/doxygen /build/gromacs-2019.1/build/documentation/docs/doxygen/CMakeFiles/doxygen-source-timestamp.dir/DependInfo.cmake --color= -/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-version.dir/build.make docs/doxygen/CMakeFiles/doxygen-version.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/docs/doxygen /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/docs/doxygen /build/gromacs-2019.1/build/documentation/docs/doxygen/CMakeFiles/doxygen-version.dir/DependInfo.cmake --color= -/usr/bin/make -f docs/CMakeFiles/sphinx-image-conversion.dir/build.make docs/CMakeFiles/sphinx-image-conversion.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/docs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/docs /build/gromacs-2019.1/build/documentation/docs/CMakeFiles/sphinx-image-conversion.dir/DependInfo.cmake --color= -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_zlib.dir/build.make src/gromacs/CMakeFiles/tng_io_zlib.dir/depend cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/programs /build/gromacs-2019.1/build/documentation/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/gromacs /build/gromacs-2019.1/build/documentation/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_zlib.dir/build.make src/gromacs/CMakeFiles/tng_io_zlib.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/gromacs /build/gromacs-2019.1/build/documentation/src/gromacs/CMakeFiles/tng_io_zlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/gromacs /build/gromacs-2019.1/build/documentation/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend -Scanning dependencies of target sphinx-image-conversion +Scanning dependencies of target doxygen-version +Scanning dependencies of target doxygen-source-timestamp make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -/usr/bin/make -f docs/CMakeFiles/sphinx-image-conversion.dir/build.make docs/CMakeFiles/sphinx-image-conversion.dir/build +make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-source-timestamp.dir/build.make docs/doxygen/CMakeFiles/doxygen-source-timestamp.dir/build +/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-version.dir/build.make docs/doxygen/CMakeFiles/doxygen-version.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E touch /build/gromacs-2019.1/build/documentation/docs/sphinx-image-conversion-timestamp.txt +cd /build/gromacs-2019.1/build/documentation/docs/doxygen && /usr/bin/cmake -E touch /build/gromacs-2019.1/build/documentation/docs/doxygen/doxygen-source-timestamp.txt +make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' +cd /build/gromacs-2019.1/build/documentation/docs/doxygen && /usr/bin/cmake -D VERSION_VARIABLES=/build/gromacs-2019.1/build/documentation/VersionInfo.cmake -D VERSION_CMAKEIN=/build/gromacs-2019.1/docs/doxygen/Doxyfile-version.cmakein -D VERSION_OUT=Doxyfile-version -P /build/gromacs-2019.1/cmake/gmxConfigureVersionInfo.cmake make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_zlib.dir/build.make src/gromacs/CMakeFiles/tng_io_zlib.dir/build +Scanning dependencies of target sphinx-image-conversion +make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_zlib.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +/usr/bin/make -f docs/CMakeFiles/sphinx-image-conversion.dir/build.make docs/CMakeFiles/sphinx-image-conversion.dir/build +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' +cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E touch /build/gromacs-2019.1/build/documentation/docs/sphinx-image-conversion-timestamp.txt +cd /build/gromacs-2019.1/build/documentation/docs/doxygen && /usr/bin/cmake -E touch Doxyfile-version +make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' +make[4]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/gromacs /build/gromacs-2019.1/build/documentation/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build -Scanning dependencies of target doxygen-version make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-version.dir/build.make docs/doxygen/CMakeFiles/doxygen-version.dir/build -make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -cd /build/gromacs-2019.1/build/documentation/docs/doxygen && /usr/bin/cmake -D VERSION_VARIABLES=/build/gromacs-2019.1/build/documentation/VersionInfo.cmake -D VERSION_CMAKEIN=/build/gromacs-2019.1/docs/doxygen/Doxyfile-version.cmakein -D VERSION_OUT=Doxyfile-version -P /build/gromacs-2019.1/cmake/gmxConfigureVersionInfo.cmake -make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -Scanning dependencies of target doxygen-source-timestamp -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build -[ 0%] Built target lmfit_objlib -make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -make[4]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. -make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-source-timestamp.dir/build.make docs/doxygen/CMakeFiles/doxygen-source-timestamp.dir/build [ 0%] Built target tng_io_zlib -make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -cd /build/gromacs-2019.1/build/documentation/docs/doxygen && /usr/bin/cmake -E touch /build/gromacs-2019.1/build/documentation/docs/doxygen/doxygen-source-timestamp.txt +[ 0%] Built target doxygen-source-timestamp +[ 0%] Built target mdrun_objlib +[ 0%] Built target lmfit_objlib /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend -[ 2%] Built target tng_io_obj /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/programs /build/gromacs-2019.1/build/documentation/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/gromacs /build/gromacs-2019.1/build/documentation/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= /usr/bin/make -f docs/CMakeFiles/sphinx-input-rst.dir/build.make docs/CMakeFiles/sphinx-input-rst.dir/depend -make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build -[ 2%] Built target mdrun_objlib make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/gromacs /build/gromacs-2019.1/build/documentation/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/programs /build/gromacs-2019.1/build/documentation/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/docs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/docs /build/gromacs-2019.1/build/documentation/docs/CMakeFiles/sphinx-input-rst.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +[ 0%] Built target doxygen-version +/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-xml.dir/build.make docs/doxygen/CMakeFiles/doxygen-xml.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. +cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/docs/doxygen /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/docs/doxygen /build/gromacs-2019.1/build/documentation/docs/doxygen/CMakeFiles/doxygen-xml.dir/DependInfo.cmake --color= +[ 2%] Built target tng_io_obj make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build +[ 2%] Built target sphinx-image-conversion make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' make[4]: Nothing to be done for 'src/programs/CMakeFiles/view_objlib.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +Scanning dependencies of target doxygen-xml +make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-xml.dir/build.make docs/doxygen/CMakeFiles/doxygen-xml.dir/build Scanning dependencies of target sphinx-input-rst -[ 2%] Built target doxygen-source-timestamp make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' +cd /build/gromacs-2019.1/build/documentation/docs/doxygen && /usr/bin/cmake -E make_directory /build/gromacs-2019.1/build/documentation/docs/doxygen/depgraphs /usr/bin/make -f docs/CMakeFiles/sphinx-input-rst.dir/build.make docs/CMakeFiles/sphinx-input-rst.dir/build +[ 2%] Built target view_objlib make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/reference-manual/plots/xvgr.png /build/gromacs-2019.1/build/documentation/docs/sphinx-input/reference-manual/plots/xvgr.png +make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. +make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -D VERSION_VARIABLES=/build/gromacs-2019.1/build/documentation/VersionInfo.cmake -D VERSION_CMAKEIN=/build/gromacs-2019.1/docs/conf-vars.py.cmakein -D VERSION_OUT=/build/gromacs-2019.1/build/documentation/docs/sphinx-input/conf-vars.py -D SPHINX_EXTENSION_PATH=/build/gromacs-2019.1/docs -D RELENG_PATH= -D IMAGE_CONVERT_STRING=impossible -D EXPECTED_DOXYGEN_VERSION=1.8.5 -D EXPECTED_SPHINX_VERSION=1.6.1 -D CMAKE_MINIMUM_REQUIRED_VERSION=3.4.3 -D REQUIRED_CUDA_VERSION=7.0 -D REQUIRED_OPENCL_MIN_VERSION=1.2 -D REQUIRED_CUDA_COMPUTE_CAPABILITY=3.0 -D REGRESSIONTEST_VERSION=2019.1 -D SOURCE_MD5SUM=unknown -D REGRESSIONTEST_MD5SUM_STRING=unknown -D GMX_TNG_MINIMUM_REQUIRED_VERSION=1.7.10 -D GMX_LMFIT_REQUIRED_VERSION=7.0 -D "GMX_MANUAL_DOI_STRING=Please reference this documentation as https://doi.org/10.5281/zenodo.2564761." -D "GMX_SOURCE_DOI_STRING=To cite the source code for this release, please cite https://doi.org/10.5281/zenodo.2564764." -P /build/gromacs-2019.1/cmake/gmxConfigureVersionInfo.cmake -[ 17%] Built target libgromacs_generated cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/index.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/index.rst +cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/download.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/download.rst make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/download.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/download.rst -[ 17%] Built target view_objlib cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/conf.py /build/gromacs-2019.1/build/documentation/docs/sphinx-input/conf.py -cd /build/gromacs-2019.1/build/documentation/docs/doxygen && /usr/bin/cmake -E touch Doxyfile-version -cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/links.dat /build/gromacs-2019.1/build/documentation/docs/sphinx-input/links.dat cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E touch /build/gromacs-2019.1/build/documentation/docs/sphinx-input/conf-vars.py +cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/links.dat /build/gromacs-2019.1/build/documentation/docs/sphinx-input/links.dat cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/build-system.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/build-system.rst -[ 19%] Built target libgromacs_external -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend +[ 4%] Built target libgromacs_external cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/change-management.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/change-management.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/commitstyle.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/commitstyle.rst +cd /build/gromacs-2019.1/build/documentation/docs/doxygen && /usr/bin/cmake -DDOCTYPE=xml -P RunDoxygen.cmake +[ 19%] Built target libgromacs_generated +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/documentation-generation.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/documentation-generation.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/contribute.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/contribute.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/doxygen.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/doxygen.rst -[ 19%] Built target sphinx-image-conversion cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/error-handling.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/error-handling.rst +NOTE: You are using Doxygen version 1.8.13. The documentation is designed for 1.8.5. Other versions may or may not work, but very likely produce extra warnings. +Running Doxygen... cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/formatting.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/formatting.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/gmxtree.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/gmxtree.rst -make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/includestyle.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/includestyle.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/index.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/index.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/jenkins.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/jenkins.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/known-issues.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/known-issues.rst -[ 19%] Built target doxygen-version cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/language-features.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/language-features.rst -/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-xml.dir/build.make docs/doxygen/CMakeFiles/doxygen-xml.dir/depend cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/naming.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/naming.rst -make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/docs/doxygen /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/docs/doxygen /build/gromacs-2019.1/build/documentation/docs/doxygen/CMakeFiles/doxygen-xml.dir/DependInfo.cmake --color= cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/overview.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/overview.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/physical_validation.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/physical_validation.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/redmine-states.png /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/redmine-states.png @@ -72455,12 +72495,7 @@ cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/style.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/style.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/testutils.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/testutils.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/tools.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/tools.rst -Scanning dependencies of target doxygen-xml cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/dev-manual/uncrustify.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/dev-manual/uncrustify.rst -make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-xml.dir/build.make docs/doxygen/CMakeFiles/doxygen-xml.dir/build -make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -cd /build/gromacs-2019.1/build/documentation/docs/doxygen && /usr/bin/cmake -E make_directory /build/gromacs-2019.1/build/documentation/docs/doxygen/depgraphs cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/fragments/doxygen-links.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/fragments/doxygen-links.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/how-to/index.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/how-to/index.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/how-to/beginners.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/how-to/beginners.rst @@ -72470,16 +72505,15 @@ cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/install-guide/index.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/install-guide/index.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/index.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/index.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2019/2019.1.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2019/2019.1.rst -cd /build/gromacs-2019.1/build/documentation/docs/doxygen && /usr/bin/cmake -DDOCTYPE=xml -P RunDoxygen.cmake cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2019/major/highlights.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2019/major/highlights.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2019/major/features.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2019/major/features.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2019/major/performance.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2019/major/performance.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2019/major/tools.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2019/major/tools.rst -NOTE: You are using Doxygen version 1.8.13. The documentation is designed for 1.8.5. Other versions may or may not work, but very likely produce extra warnings. -Running Doxygen... cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2019/major/bugs-fixed.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2019/major/bugs-fixed.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2019/major/removed-functionality.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2019/major/removed-functionality.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2019/major/deprecated-functionality.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2019/major/deprecated-functionality.rst +make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' +cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/gromacs /build/gromacs-2019.1/build/documentation/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2019/major/portability.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2019/major/portability.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2019/major/miscellaneous.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2019/major/miscellaneous.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2018/2018.6.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2018/2018.6.rst @@ -72505,6 +72539,8 @@ cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2016/major/new-features.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2016/major/new-features.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2016/major/performance.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2016/major/performance.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2016/major/tools.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2016/major/tools.rst +make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2016/major/bugs-fixed.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2016/major/bugs-fixed.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2016/major/removed-features.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2016/major/removed-features.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/release-notes/2016/major/miscellaneous.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/release-notes/2016/major/miscellaneous.rst @@ -72519,8 +72555,6 @@ cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/user-guide/force-fields.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/user-guide/force-fields.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/user-guide/getting-started.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/user-guide/getting-started.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/user-guide/index.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/user-guide/index.rst -make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/gromacs /build/gromacs-2019.1/build/documentation/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/user-guide/managing-simulations.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/user-guide/managing-simulations.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/user-guide/mdp-options.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/user-guide/mdp-options.rst cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/user-guide/mdrun-features.rst /build/gromacs-2019.1/build/documentation/docs/sphinx-input/user-guide/mdrun-features.rst @@ -72552,34 +72586,32 @@ cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/reference-manual/plots/peregrine.png /build/gromacs-2019.1/build/documentation/docs/sphinx-input/reference-manual/plots/peregrine.png cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/reference-manual/plots/adress.png /build/gromacs-2019.1/build/documentation/docs/sphinx-input/reference-manual/plots/adress.png cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E copy /build/gromacs-2019.1/docs/reference-manual/plots/plotje.png /build/gromacs-2019.1/build/documentation/docs/sphinx-input/reference-manual/plots/plotje.png -cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E touch /build/gromacs-2019.1/build/documentation/docs/sphinx-input-rst-timestamp.txt -make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -[ 29%] Built target sphinx-input-rst -/usr/bin/make -f docs/CMakeFiles/sphinx-input.dir/build.make docs/CMakeFiles/sphinx-input.dir/depend -make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/docs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/docs /build/gromacs-2019.1/build/documentation/docs/CMakeFiles/sphinx-input.dir/DependInfo.cmake --color= -Scanning dependencies of target sphinx-input -make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -/usr/bin/make -f docs/CMakeFiles/sphinx-input.dir/build.make docs/CMakeFiles/sphinx-input.dir/build -make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' -make[4]: Nothing to be done for 'docs/CMakeFiles/sphinx-input.dir/build'. -make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build -[ 29%] Built target sphinx-input make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' -[ 93%] Built target libgromacs +cd /build/gromacs-2019.1/build/documentation/docs && /usr/bin/cmake -E touch /build/gromacs-2019.1/build/documentation/docs/sphinx-input-rst-timestamp.txt +[ 83%] Built target libgromacs /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend +make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/src/programs /build/gromacs-2019.1/build/documentation/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= +[ 93%] Built target sphinx-input-rst +/usr/bin/make -f docs/CMakeFiles/sphinx-input.dir/build.make docs/CMakeFiles/sphinx-input.dir/depend make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' +cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/docs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/docs /build/gromacs-2019.1/build/documentation/docs/CMakeFiles/sphinx-input.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' make[4]: Nothing to be done for 'src/programs/CMakeFiles/gmx.dir/build'. make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +Scanning dependencies of target sphinx-input [ 93%] Built target gmx +make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +/usr/bin/make -f docs/CMakeFiles/sphinx-input.dir/build.make docs/CMakeFiles/sphinx-input.dir/build +make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' +make[4]: Nothing to be done for 'docs/CMakeFiles/sphinx-input.dir/build'. +make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' +[ 93%] Built target sphinx-input /usr/bin/make -f docs/CMakeFiles/sphinx-programs.dir/build.make docs/CMakeFiles/sphinx-programs.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/docs /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/docs /build/gromacs-2019.1/build/documentation/docs/CMakeFiles/sphinx-programs.dir/DependInfo.cmake --color= @@ -72724,9 +72756,9 @@ make[4]: Leaving directory '/build/gromacs-2019.1/build/documentation' [ 97%] Built target dep-graphs-dot /usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-lib.dir/build.make docs/doxygen/CMakeFiles/doxygen-lib.dir/depend -/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-full.dir/build.make docs/doxygen/CMakeFiles/doxygen-full.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/docs/doxygen /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/docs/doxygen /build/gromacs-2019.1/build/documentation/docs/doxygen/CMakeFiles/doxygen-lib.dir/DependInfo.cmake --color= +/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-full.dir/build.make docs/doxygen/CMakeFiles/doxygen-full.dir/depend make[4]: Entering directory '/build/gromacs-2019.1/build/documentation' cd /build/gromacs-2019.1/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/docs/doxygen /build/gromacs-2019.1/build/documentation /build/gromacs-2019.1/build/documentation/docs/doxygen /build/gromacs-2019.1/build/documentation/docs/doxygen/CMakeFiles/doxygen-full.dir/DependInfo.cmake --color= Scanning dependencies of target doxygen-lib @@ -72925,20 +72957,20 @@ /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/gromacs-2019.1/build/basic' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend -make[3]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs /build/gromacs-2019.1/build/basic/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend -make[3]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs /build/gromacs-2019.1/build/basic/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend +make[3]: Entering directory '/build/gromacs-2019.1/build/basic' +cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs /build/gromacs-2019.1/build/basic/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/basic' +cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs /build/gromacs-2019.1/build/basic/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/programs /build/gromacs-2019.1/build/basic/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= +/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/programs /build/gromacs-2019.1/build/basic/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs /build/gromacs-2019.1/build/basic/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2019.1/build/basic' @@ -72947,45 +72979,45 @@ cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/gromacs /build/gromacs-2019.1/build/basic/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build -make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' -make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' -make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' make[3]: Entering directory '/build/gromacs-2019.1/build/basic' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' +make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build -/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/basic' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' +make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' +/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build +make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +[ 0%] Built target lmfit_objlib +make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' +/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/basic' make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' make[3]: Entering directory '/build/gromacs-2019.1/build/basic' +make[3]: Nothing to be done for 'src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build'. +make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' +make[3]: Entering directory '/build/gromacs-2019.1/build/basic' make[3]: Nothing to be done for 'src/programs/CMakeFiles/view_objlib.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' -/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build -make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build -[ 0%] Built target lmfit_objlib -make[3]: Entering directory '/build/gromacs-2019.1/build/basic' -make[3]: Nothing to be done for 'src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build'. +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' [ 1%] Built target tng_io_obj +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build +[ 2%] Built target mdrun_objlib +[ 4%] Built target mdrun_test_objlib +[ 4%] Built target view_objlib make[3]: Entering directory '/build/gromacs-2019.1/build/basic' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' -[ 1%] Built target mdrun_test_objlib -[ 2%] Built target view_objlib -make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build -[ 4%] Built target mdrun_objlib -[ 8%] Built target libgromacs_external make[3]: Entering directory '/build/gromacs-2019.1/build/basic' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' +[ 8%] Built target libgromacs_external [ 24%] Built target libgromacs_generated /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/basic' @@ -72997,24 +73029,22 @@ make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' [ 98%] Built target libgromacs /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend +/usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/share/template /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/share/template /build/gromacs-2019.1/build/basic/share/template/CMakeFiles/template.dir/DependInfo.cmake --color= -/usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/basic' cd /build/gromacs-2019.1/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/basic /build/gromacs-2019.1/build/basic/src/programs /build/gromacs-2019.1/build/basic/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' -/usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' -make[3]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template.dir/link.txt --verbose=1 /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build +/usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/basic' -cd /build/gromacs-2019.1/build/basic/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmx.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/template.dir/template.cpp.o -o ../../bin/template -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib ../../lib/libgromacs.so.4.0.0 -fopenmp -lm -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2019.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gmx.dir/gmx.cpp.o CMakeFiles/gmx.dir/legacymodules.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/view_objlib.dir/view/3dview.cpp.o CMakeFiles/view_objlib.dir/view/buttons.cpp.o CMakeFiles/view_objlib.dir/view/dialogs.cpp.o CMakeFiles/view_objlib.dir/view/fgrid.cpp.o CMakeFiles/view_objlib.dir/view/filter.cpp.o CMakeFiles/view_objlib.dir/view/logo.cpp.o CMakeFiles/view_objlib.dir/view/manager.cpp.o CMakeFiles/view_objlib.dir/view/molps.cpp.o CMakeFiles/view_objlib.dir/view/nleg.cpp.o CMakeFiles/view_objlib.dir/view/nmol.cpp.o CMakeFiles/view_objlib.dir/view/popup.cpp.o CMakeFiles/view_objlib.dir/view/pulldown.cpp.o CMakeFiles/view_objlib.dir/view/view.cpp.o CMakeFiles/view_objlib.dir/view/x11.cpp.o CMakeFiles/view_objlib.dir/view/xdlg.cpp.o CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o CMakeFiles/view_objlib.dir/view/xmb.cpp.o CMakeFiles/view_objlib.dir/view/xutil.cpp.o -o ../../bin/gmx -Wl,-rpath,/build/gromacs-2019.1/build/basic/lib: ../../lib/libgromacs.so.4.0.0 -fopenmp /usr/lib/aarch64-linux-gnu/libX11.so -lm +make[3]: Nothing to be done for 'share/template/CMakeFiles/template.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' -[100%] Built target template +make[3]: Entering directory '/build/gromacs-2019.1/build/basic' +make[3]: Nothing to be done for 'src/programs/CMakeFiles/gmx.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/basic' +[100%] Built target template [100%] Built target gmx make[2]: Leaving directory '/build/gromacs-2019.1/build/basic' /usr/bin/cmake -E cmake_progress_start /build/gromacs-2019.1/build/basic/CMakeFiles 0 @@ -73750,69 +73780,69 @@ /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend -make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs /build/gromacs-2019.1/build/basic-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend -make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs /build/gromacs-2019.1/build/basic-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend -make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. -make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs /build/gromacs-2019.1/build/basic-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs /build/gromacs-2019.1/build/basic-dp/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs /build/gromacs-2019.1/build/basic-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs /build/gromacs-2019.1/build/basic-dp/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= -/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend -make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/programs /build/gromacs-2019.1/build/basic-dp/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= -[ 0%] Built target lmfit_objlib +/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/programs /build/gromacs-2019.1/build/basic-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend +make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' +cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/programs /build/gromacs-2019.1/build/basic-dp/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests /build/gromacs-2019.1/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' +cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs /build/gromacs-2019.1/build/basic-dp/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -make[3]: Nothing to be done for 'src/programs/CMakeFiles/view_objlib.dir/build'. -make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. -make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. +make[3]: Nothing to be done for 'src/programs/CMakeFiles/view_objlib.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build +[ 0%] Built target lmfit_objlib +make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' +make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. +make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' [ 1%] Built target view_objlib -[ 2%] Built target tng_io_obj +[ 7%] Built target tng_io_obj +[ 7%] Built target libgromacs_external make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' make[3]: Nothing to be done for 'src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 7%] Built target libgromacs_external [ 8%] Built target mdrun_objlib +make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build +[ 8%] Built target mdrun_test_objlib +make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. +make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' [ 24%] Built target libgromacs_generated /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend -[ 24%] Built target mdrun_test_objlib make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/gromacs /build/gromacs-2019.1/build/basic-dp/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' @@ -73828,17 +73858,17 @@ make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' cd /build/gromacs-2019.1/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/basic-dp /build/gromacs-2019.1/build/basic-dp/src/programs /build/gromacs-2019.1/build/basic-dp/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -/usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' +/usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -make[3]: Nothing to be done for 'src/programs/CMakeFiles/gmx.dir/build'. +make[3]: Nothing to be done for 'share/template/CMakeFiles/template.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' make[3]: Entering directory '/build/gromacs-2019.1/build/basic-dp' -make[3]: Nothing to be done for 'share/template/CMakeFiles/template.dir/build'. +make[3]: Nothing to be done for 'src/programs/CMakeFiles/gmx.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' -[ 98%] Built target gmx [100%] Built target template +[100%] Built target gmx make[2]: Leaving directory '/build/gromacs-2019.1/build/basic-dp' /usr/bin/cmake -E cmake_progress_start /build/gromacs-2019.1/build/basic-dp/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall @@ -74583,48 +74613,48 @@ make[2]: Entering directory '/build/gromacs-2019.1/build/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs /build/gromacs-2019.1/build/mpich/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs /build/gromacs-2019.1/build/mpich/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs /build/gromacs-2019.1/build/mpich/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend +cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs /build/gromacs-2019.1/build/mpich/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/programs /build/gromacs-2019.1/build/mpich/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' -cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs /build/gromacs-2019.1/build/mpich/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich /build/gromacs-2019.1/build/mpich/src/gromacs /build/gromacs-2019.1/build/mpich/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' -make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' -make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build +make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' +make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build -[ 0%] Built target mdrun_objlib +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build +[ 1%] Built target lmfit_objlib +[ 2%] Built target libgromacs_external make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' -make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' -[ 2%] Built target tng_io_obj +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build +[ 2%] Built target mdrun_objlib +[ 5%] Built target tng_io_obj make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich' -[ 3%] Built target libgromacs_external -[ 5%] Built target lmfit_objlib [ 27%] Built target libgromacs_generated /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/mpich' @@ -74665,49 +74695,49 @@ make[2]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend -make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' -cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs /build/gromacs-2019.1/build/mpich-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend -make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' -cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs /build/gromacs-2019.1/build/mpich-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' -cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs /build/gromacs-2019.1/build/mpich-dp/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs /build/gromacs-2019.1/build/mpich-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' -cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs /build/gromacs-2019.1/build/mpich-dp/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= +cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs /build/gromacs-2019.1/build/mpich-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/programs /build/gromacs-2019.1/build/mpich-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' +cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs /build/gromacs-2019.1/build/mpich-dp/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. +make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' +make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' +cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs /build/gromacs-2019.1/build/mpich-dp/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' +[ 1%] Built target mdrun_objlib +[ 2%] Built target tng_io_obj +[ 3%] Built target lmfit_objlib +[ 5%] Built target libgromacs_external make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' -make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/mpich-dp' -[ 0%] Built target mdrun_objlib -[ 22%] Built target libgromacs_generated -[ 23%] Built target lmfit_objlib -[ 26%] Built target tng_io_obj -[ 27%] Built target libgromacs_external +[ 27%] Built target libgromacs_generated /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/mpich-dp' cd /build/gromacs-2019.1/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/mpich-dp /build/gromacs-2019.1/build/mpich-dp/src/gromacs /build/gromacs-2019.1/build/mpich-dp/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= @@ -74759,48 +74789,48 @@ make[2]: Entering directory '/build/gromacs-2019.1/build/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs /build/gromacs-2019.1/build/openmpi/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs /build/gromacs-2019.1/build/openmpi/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' -cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs /build/gromacs-2019.1/build/openmpi/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/programs /build/gromacs-2019.1/build/openmpi/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' +cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs /build/gromacs-2019.1/build/openmpi/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' cd /build/gromacs-2019.1/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi /build/gromacs-2019.1/build/openmpi/src/gromacs /build/gromacs-2019.1/build/openmpi/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build -make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build -make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build -[ 1%] Built target lmfit_objlib -make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. +make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +[ 1%] Built target lmfit_objlib +[ 1%] Built target mdrun_objlib make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build [ 3%] Built target tng_io_obj [ 5%] Built target libgromacs_external -[ 5%] Built target mdrun_objlib +make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. +make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi' [ 27%] Built target libgromacs_generated /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi' @@ -74841,31 +74871,31 @@ make[2]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/programs /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/programs /build/gromacs-2019.1/build/openmpi-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build -make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. -make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +cd /build/gromacs-2019.1/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2019.1 /build/gromacs-2019.1/src/gromacs /build/gromacs-2019.1/build/openmpi-dp /build/gromacs-2019.1/build/openmpi-dp/src/gromacs /build/gromacs-2019.1/build/openmpi-dp/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. +make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' @@ -74875,11 +74905,11 @@ make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' [ 1%] Built target libgromacs_external -[ 2%] Built target mdrun_objlib +[ 2%] Built target lmfit_objlib [ 5%] Built target tng_io_obj -[ 5%] Built target lmfit_objlib make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build +[ 5%] Built target mdrun_objlib make[3]: Entering directory '/build/gromacs-2019.1/build/openmpi-dp' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. make[3]: Leaving directory '/build/gromacs-2019.1/build/openmpi-dp' @@ -74966,7 +74996,7 @@ Now scanning "/build/gromacs-2019.1/debian/gromacs-data/usr/share/doc", found 23772 files. Now have 23772 files in total. Removed 0 files due to nonunique device and inode. -Total size is 187255187 bytes or 179 MiB +Total size is 187258465 bytes or 179 MiB Removed 5899 files due to unique sizes from list.17873 files left. Now eliminating candidates based on first bytes:removed 5250 files from list.12623 files left. Now eliminating candidates based on last bytes:removed 1350 files from list.11273 files left. @@ -76716,28 +76746,28 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/uniformrealdistribution_8h__dep__incl.map -> ../html-lib/uniformrealdistribution_8h__dep__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/bc_s.png -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/bc_s.png changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/bc_s.png -> ../html-full/bc_s.png -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataWeightedHistogramModule__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataWeightedHistogramModule__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataWeightedHistogramModule__inherit__graph.map -> ../html-full/classgmx_1_1AnalysisDataWeightedHistogramModule__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataWeightedHistogramModule__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataWeightedHistogramModule__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataWeightedHistogramModule__coll__graph.map -> ../html-full/classgmx_1_1AnalysisDataWeightedHistogramModule__coll__graph.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataSimpleHistogramModule__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataSimpleHistogramModule__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataSimpleHistogramModule__coll__graph.map -> ../html-full/classgmx_1_1AnalysisDataSimpleHistogramModule__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataWeightedHistogramModule__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataWeightedHistogramModule__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataWeightedHistogramModule__inherit__graph.map -> ../html-full/classgmx_1_1AnalysisDataWeightedHistogramModule__coll__graph.map absolute: 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-> ../html-full/classgmx_1_1AnalysisDataDisplacementModule__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataDisplacementModule__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataDisplacementModule__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataDisplacementModule__inherit__graph.map -> ../html-full/classgmx_1_1AnalysisDataDisplacementModule__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisDataModuleParallel__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataModuleParallel__inherit__graph.map changed: 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/build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/folderclosed.png -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/folderclosed.png changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/folderclosed.png -> ../html-full/folderclosed.png absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1RepeatingOptionSectionHandle__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1RepeatingOptionSectionHandle__coll__graph.map @@ -76886,10 +76916,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1StringOption__coll__graph.map -> ../html-full/classgmx_1_1StringOption__coll__graph.map absolute: 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/build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1InconsistentInputError__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1InconsistentInputError__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1InconsistentInputError__coll__graph.map -> ../html-full/classgmx_1_1InconsistentInputError__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1InconsistentInputError__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1InconsistentInputError__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1InconsistentInputError__inherit__graph.map -> ../html-full/classgmx_1_1InconsistentInputError__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1BooleanOption__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1BooleanOption__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1BooleanOption__coll__graph.map -> ../html-full/classgmx_1_1BooleanOption__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1BooleanOption__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1BooleanOption__coll__graph.map @@ -76936,10 +76966,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/dir_5391a40c18b9d17ef33891155eb7da13_dep.map -> 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/build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1ThreeFry2x64Fast__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1ThreeFry2x64Fast__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1ThreeFry2x64Fast__coll__graph.map -> ../html-full/classgmx_1_1ThreeFry2x64Fast__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1ThreeFry2x64Fast__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1ThreeFry2x64Fast__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1ThreeFry2x64Fast__inherit__graph.map -> ../html-full/classgmx_1_1ThreeFry2x64Fast__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_51.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_190.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_51.map -> ../html-full/inherit_graph_190.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_27.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_96.map @@ -76970,10 +77000,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/topologyinformation_8h__incl.map -> ../html-full/topologyinformation_8h__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/uniformintdistribution_8h__dep__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/uniformintdistribution_8h__dep__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/uniformintdistribution_8h__dep__incl.map -> ../html-lib/uniformintdistribution_8h__dep__incl.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1RepeatingOptionSection__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1RepeatingOptionSection__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1RepeatingOptionSection__coll__graph.map -> ../html-full/classgmx_1_1RepeatingOptionSection__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1RepeatingOptionSection__inherit__graph.map -> 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/build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_58.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_7.map -> ../html-full/inherit_graph_58.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_12.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_67.map @@ -77026,10 +77056,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_35.map -> ../html-full/inherit_graph_135.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_8.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_61.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_8.map -> ../html-full/inherit_graph_61.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1OptionTemplate__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1OptionTemplate__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1OptionTemplate__inherit__graph.map -> ../html-full/classgmx_1_1OptionTemplate__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1OptionTemplate__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1OptionTemplate__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1OptionTemplate__coll__graph.map -> ../html-full/classgmx_1_1OptionTemplate__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1OptionTemplate__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1OptionTemplate__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1OptionTemplate__inherit__graph.map -> ../html-full/classgmx_1_1OptionTemplate__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_66.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_287.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_66.map -> ../html-full/inherit_graph_287.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_79.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_377.map @@ -77042,10 +77072,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_9.map -> ../html-full/inherit_graph_62.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_4.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_50.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_4.map -> ../html-full/inherit_graph_50.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1SelectionOptionBehavior__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SelectionOptionBehavior__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1SelectionOptionBehavior__coll__graph.map -> ../html-full/classgmx_1_1SelectionOptionBehavior__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1SelectionOptionBehavior__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SelectionOptionBehavior__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1SelectionOptionBehavior__inherit__graph.map -> ../html-full/classgmx_1_1SelectionOptionBehavior__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1SelectionOptionBehavior__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SelectionOptionBehavior__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1SelectionOptionBehavior__coll__graph.map -> ../html-full/classgmx_1_1SelectionOptionBehavior__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_76.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_354.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_76.map -> ../html-full/inherit_graph_354.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_103.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_505.map @@ -77064,20 +77094,20 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/cmdlineparser_8h__incl.map -> ../html-full/cmdlineparser_8h__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/abstractdata_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/abstractdata_8h__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/abstractdata_8h__incl.map -> ../html-full/abstractdata_8h__incl.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1SimulationInstabilityError__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SimulationInstabilityError__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1SimulationInstabilityError__coll__graph.map -> ../html-full/classgmx_1_1SimulationInstabilityError__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1SimulationInstabilityError__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SimulationInstabilityError__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1SimulationInstabilityError__inherit__graph.map -> ../html-full/classgmx_1_1SimulationInstabilityError__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1SimulationInstabilityError__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SimulationInstabilityError__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1SimulationInstabilityError__coll__graph.map -> ../html-full/classgmx_1_1SimulationInstabilityError__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1BooleanOptionInfo__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1BooleanOptionInfo__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1BooleanOptionInfo__coll__graph.map -> ../html-full/classgmx_1_1BooleanOptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1BooleanOptionInfo__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1BooleanOptionInfo__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1BooleanOptionInfo__inherit__graph.map -> ../html-full/classgmx_1_1BooleanOptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_73.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_330.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_73.map -> ../html-full/inherit_graph_330.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1IntegerOptionInfo__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1IntegerOptionInfo__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1IntegerOptionInfo__inherit__graph.map -> ../html-full/classgmx_1_1IntegerOptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1IntegerOptionInfo__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1IntegerOptionInfo__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1IntegerOptionInfo__coll__graph.map -> ../html-full/classgmx_1_1IntegerOptionInfo__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1IntegerOptionInfo__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1IntegerOptionInfo__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1IntegerOptionInfo__inherit__graph.map -> ../html-full/classgmx_1_1IntegerOptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/cmdlinemodule_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/cmdlinemodule_8h__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/cmdlinemodule_8h__incl.map -> ../html-full/cmdlinemodule_8h__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_40.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_142.map @@ -77088,10 +77118,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_70.map -> ../html-lib/inherit_graph_185.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_59.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_223.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_59.map -> ../html-full/inherit_graph_223.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1StringOptionInfo__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1StringOptionInfo__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1StringOptionInfo__coll__graph.map -> ../html-full/classgmx_1_1StringOptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1StringOptionInfo__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1StringOptionInfo__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1StringOptionInfo__inherit__graph.map -> ../html-full/classgmx_1_1StringOptionInfo__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1StringOptionInfo__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1StringOptionInfo__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1StringOptionInfo__coll__graph.map -> ../html-full/classgmx_1_1StringOptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_44.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_147.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_44.map -> ../html-full/inherit_graph_147.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/baseversion_8h__dep__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/baseversion_8h__dep__incl.map @@ -77102,10 +77132,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_95.map -> ../html-full/inherit_graph_479.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_42.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_144.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_42.map -> ../html-full/inherit_graph_144.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1DoubleOptionInfo__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1DoubleOptionInfo__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1DoubleOptionInfo__coll__graph.map -> ../html-full/classgmx_1_1DoubleOptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1DoubleOptionInfo__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1DoubleOptionInfo__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1DoubleOptionInfo__inherit__graph.map -> ../html-full/classgmx_1_1DoubleOptionInfo__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1DoubleOptionInfo__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1DoubleOptionInfo__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1DoubleOptionInfo__coll__graph.map -> ../html-full/classgmx_1_1DoubleOptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_97.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_483.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_97.map -> ../html-full/inherit_graph_483.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_33.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_122.map @@ -77114,10 +77144,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/cstringutil_8h__incl.map -> ../html-full/cstringutil_8h__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_14.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_69.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_14.map -> ../html-full/inherit_graph_69.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1Int64OptionInfo__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1Int64OptionInfo__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1Int64OptionInfo__coll__graph.map -> ../html-full/classgmx_1_1Int64OptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1Int64OptionInfo__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1Int64OptionInfo__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1Int64OptionInfo__inherit__graph.map -> ../html-full/classgmx_1_1Int64OptionInfo__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1Int64OptionInfo__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1Int64OptionInfo__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1Int64OptionInfo__coll__graph.map -> ../html-full/classgmx_1_1Int64OptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1FloatOptionInfo__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1FloatOptionInfo__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1FloatOptionInfo__inherit__graph.map -> ../html-full/classgmx_1_1FloatOptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1FloatOptionInfo__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1FloatOptionInfo__coll__graph.map @@ -77150,10 +77180,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_101.map -> ../html-full/inherit_graph_491.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_39.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_66.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_39.map -> ../html-lib/inherit_graph_66.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1TimeUnitBehavior__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1TimeUnitBehavior__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1TimeUnitBehavior__coll__graph.map -> ../html-full/classgmx_1_1TimeUnitBehavior__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1TimeUnitBehavior__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1TimeUnitBehavior__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1TimeUnitBehavior__inherit__graph.map -> ../html-full/classgmx_1_1TimeUnitBehavior__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1TimeUnitBehavior__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1TimeUnitBehavior__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1TimeUnitBehavior__coll__graph.map -> ../html-full/classgmx_1_1TimeUnitBehavior__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/md__enums_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/md__enums_8h__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/md__enums_8h__incl.map -> ../html-full/md__enums_8h__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_104.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_514.map @@ -77182,10 +77212,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/init_8h__dep__incl.map -> ../html-lib/init_8h__dep__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_38.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_140.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/inherit_graph_38.map -> ../html-full/inherit_graph_140.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1OptionSection__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1OptionSection__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1OptionSection__coll__graph.map -> ../html-full/classgmx_1_1OptionSection__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1OptionSection__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1OptionSection__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1OptionSection__inherit__graph.map -> ../html-full/classgmx_1_1OptionSection__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1OptionSection__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1OptionSection__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1OptionSection__coll__graph.map -> ../html-full/classgmx_1_1OptionSection__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/localatomset_8h__dep__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/localatomset_8h__dep__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/localatomset_8h__dep__incl.map -> ../html-lib/localatomset_8h__dep__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/classgmx_1_1AnalysisData__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisData__coll__graph.map @@ -78490,10 +78520,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_2.html -> ../../html-full/search/all_2.html absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/defines_a.js -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/search/defines_c.js changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/defines_a.js -> ../../html-lib/search/defines_c.js -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_a.js -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_a.js -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_a.js -> ../../html-full/search/functions_a.js absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_a.js -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_a.js changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/functions_a.js -> ../../html-full/search/functions_a.js +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_a.js -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/functions_a.js +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/all_a.js -> ../../html-full/search/functions_a.js absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/search_r.png -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/search_r.png changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/search_r.png -> ../../html-full/search/search_r.png absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-user/search/search_l.png -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/search/search_l.png @@ -82056,22 +82086,22 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/valuestore_8h__incl.map -> ../html-full/valuestore_8h__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/updategroups_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/updategroups_8h__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/updategroups_8h__incl.map -> ../html-full/updategroups_8h__incl.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataBinAverageModule__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataBinAverageModule__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataBinAverageModule__inherit__graph.map -> ../html-full/classgmx_1_1AnalysisDataBinAverageModule__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataBinAverageModule__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataBinAverageModule__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataBinAverageModule__coll__graph.map -> ../html-full/classgmx_1_1AnalysisDataBinAverageModule__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataBinAverageModule__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataBinAverageModule__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataBinAverageModule__inherit__graph.map -> ../html-full/classgmx_1_1AnalysisDataBinAverageModule__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/domdec_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/domdec_8h__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/domdec_8h__incl.map -> ../html-full/domdec_8h__incl.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataLifetimeModule__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataLifetimeModule__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataLifetimeModule__inherit__graph.map -> ../html-full/classgmx_1_1AnalysisDataLifetimeModule__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataLifetimeModule__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataLifetimeModule__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataLifetimeModule__coll__graph.map -> ../html-full/classgmx_1_1AnalysisDataLifetimeModule__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataLifetimeModule__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataLifetimeModule__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataLifetimeModule__inherit__graph.map -> ../html-full/classgmx_1_1AnalysisDataLifetimeModule__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/group__group__analysismodules.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/group__group__analysismodules.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/group__group__analysismodules.map -> ../html-full/group__group__analysismodules.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataAverageModule__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataAverageModule__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataAverageModule__coll__graph.map -> ../html-full/classgmx_1_1AnalysisDataAverageModule__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataAverageModule__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataAverageModule__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataAverageModule__inherit__graph.map -> ../html-full/classgmx_1_1AnalysisDataAverageModule__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataAverageModule__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataAverageModule__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataAverageModule__coll__graph.map -> ../html-full/classgmx_1_1AnalysisDataAverageModule__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/multisim_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/multisim_8h__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/multisim_8h__incl.map -> ../html-full/multisim_8h__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/lincs_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/lincs_8h__incl.map @@ -82160,10 +82190,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/group__module__commandline.map -> ../html-full/group__module__commandline.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classt__state__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classt__state__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classt__state__coll__graph.map -> ../html-full/classt__state__coll__graph.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataWeightedHistogramModule__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataWeightedHistogramModule__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataWeightedHistogramModule__inherit__graph.map -> ../html-full/classgmx_1_1AnalysisDataWeightedHistogramModule__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataWeightedHistogramModule__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataWeightedHistogramModule__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataWeightedHistogramModule__coll__graph.map -> ../html-full/classgmx_1_1AnalysisDataWeightedHistogramModule__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataWeightedHistogramModule__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataWeightedHistogramModule__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataWeightedHistogramModule__inherit__graph.map -> ../html-full/classgmx_1_1AnalysisDataWeightedHistogramModule__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/form_33.png -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/form_40.png changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/form_33.png -> ../html-full/form_40.png absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataSimpleHistogramModule__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataSimpleHistogramModule__coll__graph.map @@ -82174,14 +82204,14 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/group__module__options.map -> ../html-full/group__module__options.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_9.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_39.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_9.map -> ../html-full/inherit_graph_39.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataFrameAverageModule__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataFrameAverageModule__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataFrameAverageModule__inherit__graph.map -> ../html-full/classgmx_1_1AnalysisDataFrameAverageModule__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataFrameAverageModule__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataFrameAverageModule__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataFrameAverageModule__coll__graph.map -> ../html-full/classgmx_1_1AnalysisDataFrameAverageModule__coll__graph.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataDisplacementModule__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataDisplacementModule__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataDisplacementModule__coll__graph.map -> ../html-full/classgmx_1_1AnalysisDataDisplacementModule__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataFrameAverageModule__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataFrameAverageModule__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataFrameAverageModule__inherit__graph.map -> ../html-full/classgmx_1_1AnalysisDataFrameAverageModule__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataDisplacementModule__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataDisplacementModule__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataDisplacementModule__inherit__graph.map -> ../html-full/classgmx_1_1AnalysisDataDisplacementModule__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataDisplacementModule__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataDisplacementModule__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataDisplacementModule__coll__graph.map -> ../html-full/classgmx_1_1AnalysisDataDisplacementModule__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataModuleParallel__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataModuleParallel__inherit__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataModuleParallel__inherit__graph.map -> ../html-full/classgmx_1_1AnalysisDataModuleParallel__inherit__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/group__module__utility.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/group__module__utility.map @@ -82192,10 +82222,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataVectorPlotModule__inherit__graph.map -> ../html-full/classgmx_1_1AnalysisDataVectorPlotModule__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/folderclosed.png -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/folderclosed.png changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/folderclosed.png -> ../html-full/folderclosed.png -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1RepeatingOptionSectionHandle__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1RepeatingOptionSectionHandle__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1RepeatingOptionSectionHandle__inherit__graph.map -> ../html-full/classgmx_1_1RepeatingOptionSectionHandle__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1RepeatingOptionSectionHandle__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1RepeatingOptionSectionHandle__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1RepeatingOptionSectionHandle__coll__graph.map -> ../html-full/classgmx_1_1RepeatingOptionSectionHandle__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1RepeatingOptionSectionHandle__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1RepeatingOptionSectionHandle__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1RepeatingOptionSectionHandle__inherit__graph.map -> ../html-full/classgmx_1_1RepeatingOptionSectionHandle__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataPlotModule__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataPlotModule__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataPlotModule__coll__graph.map -> ../html-full/classgmx_1_1AnalysisDataPlotModule__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisDataPlotModule__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisDataPlotModule__coll__graph.map @@ -82238,10 +82268,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/dir_1fe0162ed265ecffa5da2d1611f0653a_dep.map -> ../html-full/dir_1fe0162ed265ecffa5da2d1611f0653a_dep.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/mtop__lookup_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/mtop__lookup_8h__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/mtop__lookup_8h__incl.map -> ../html-full/mtop__lookup_8h__incl.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionSectionHandle__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1OptionSectionHandle__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionSectionHandle__coll__graph.map -> ../html-full/classgmx_1_1OptionSectionHandle__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionSectionHandle__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1OptionSectionHandle__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionSectionHandle__inherit__graph.map -> ../html-full/classgmx_1_1OptionSectionHandle__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionSectionHandle__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1OptionSectionHandle__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionSectionHandle__coll__graph.map -> ../html-full/classgmx_1_1OptionSectionHandle__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/arrayref_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/arrayref_8h__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/arrayref_8h__incl.map -> ../html-full/arrayref_8h__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/dir_4b325a1c4aa1a0d0d08bd093b4d6ad41_dep.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/dir_4b325a1c4aa1a0d0d08bd093b4d6ad41_dep.map @@ -82294,10 +82324,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/impl__reference__util__float_8h__incl.map -> ../html-full/impl__reference__util__float_8h__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/group__module__domdec.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/group__module__domdec.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/group__module__domdec.map -> ../html-full/group__module__domdec.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionStorageTemplateSimple__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1OptionStorageTemplateSimple__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionStorageTemplateSimple__coll__graph.map -> ../html-full/classgmx_1_1OptionStorageTemplateSimple__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionStorageTemplateSimple__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1OptionStorageTemplateSimple__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionStorageTemplateSimple__inherit__graph.map -> ../html-full/classgmx_1_1OptionStorageTemplateSimple__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionStorageTemplateSimple__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1OptionStorageTemplateSimple__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionStorageTemplateSimple__coll__graph.map -> ../html-full/classgmx_1_1OptionStorageTemplateSimple__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/form_21.png -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/form_28.png changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/form_21.png -> ../html-full/form_28.png absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/group__module__taskassignment.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/group__module__taskassignment.map @@ -82320,20 +82350,20 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/group__module__listed-forces.map -> ../html-full/group__module__listed-forces.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/form_42.png -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/form_49.png changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/form_42.png -> ../html-full/form_49.png -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AbstractAverageHistogram__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AbstractAverageHistogram__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AbstractAverageHistogram__coll__graph.map -> ../html-full/classgmx_1_1AbstractAverageHistogram__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AbstractAverageHistogram__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AbstractAverageHistogram__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AbstractAverageHistogram__inherit__graph.map -> ../html-full/classgmx_1_1AbstractAverageHistogram__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AbstractAverageHistogram__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AbstractAverageHistogram__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AbstractAverageHistogram__coll__graph.map -> ../html-full/classgmx_1_1AbstractAverageHistogram__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1CompositeHelpTopic__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1CompositeHelpTopic__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1CompositeHelpTopic__coll__graph.map -> ../html-full/classgmx_1_1CompositeHelpTopic__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1CompositeHelpTopic__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1CompositeHelpTopic__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1CompositeHelpTopic__inherit__graph.map -> ../html-full/classgmx_1_1CompositeHelpTopic__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/group__module__random.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/group__module__random.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/group__module__random.map -> ../html-full/group__module__random.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1EnumOption__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1EnumOption__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1EnumOption__coll__graph.map -> ../html-full/classgmx_1_1EnumOption__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1EnumOption__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1EnumOption__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1EnumOption__inherit__graph.map -> ../html-full/classgmx_1_1EnumOption__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1EnumOption__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1EnumOption__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1EnumOption__coll__graph.map -> ../html-full/classgmx_1_1EnumOption__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/group__module__imd.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/group__module__imd.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/group__module__imd.map -> ../html-full/group__module__imd.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1IOptionManager__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1IOptionManager__inherit__graph.map @@ -82350,10 +82380,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/group__module__tables.map -> ../html-full/group__module__tables.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/group__module__testutils.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/group__module__testutils.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/group__module__testutils.map -> ../html-full/group__module__testutils.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisArrayData__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisArrayData__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisArrayData__inherit__graph.map -> ../html-full/classgmx_1_1AnalysisArrayData__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisArrayData__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisArrayData__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisArrayData__coll__graph.map -> ../html-full/classgmx_1_1AnalysisArrayData__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisArrayData__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AnalysisArrayData__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AnalysisArrayData__inherit__graph.map -> ../html-full/classgmx_1_1AnalysisArrayData__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1ForceProviderOutput__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1ForceProviderOutput__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1ForceProviderOutput__coll__graph.map -> ../html-full/classgmx_1_1ForceProviderOutput__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AbstractPlotModule__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AbstractPlotModule__coll__graph.map @@ -82436,10 +82466,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/bitmask_8h__incl.map -> ../html-full/bitmask_8h__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/form_40.png -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/form_47.png changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/form_40.png -> ../html-full/form_47.png -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1StringOption__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1StringOption__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1StringOption__coll__graph.map -> ../html-full/classgmx_1_1StringOption__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1StringOption__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1StringOption__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1StringOption__inherit__graph.map -> ../html-full/classgmx_1_1StringOption__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1StringOption__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1StringOption__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1StringOption__coll__graph.map -> ../html-full/classgmx_1_1StringOption__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1InconsistentInputError__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1InconsistentInputError__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1InconsistentInputError__coll__graph.map -> ../html-full/classgmx_1_1InconsistentInputError__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1InconsistentInputError__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1InconsistentInputError__coll__graph.map @@ -82458,10 +82488,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1BooleanOption__inherit__graph.map -> ../html-full/classgmx_1_1BooleanOption__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/selection_8h__dep__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/selection_8h__dep__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/selection_8h__dep__incl.map -> ../html-full/selection_8h__dep__incl.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1DoubleOption__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1DoubleOption__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1DoubleOption__inherit__graph.map -> ../html-full/classgmx_1_1DoubleOption__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1DoubleOption__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1DoubleOption__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1DoubleOption__coll__graph.map -> ../html-full/classgmx_1_1DoubleOption__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1DoubleOption__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1DoubleOption__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1DoubleOption__inherit__graph.map -> ../html-full/classgmx_1_1DoubleOption__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/textreader_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/textreader_8h__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/textreader_8h__incl.map -> ../html-full/textreader_8h__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/form_43.png -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/form_50.png @@ -82472,10 +82502,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1IntegerOption__inherit__graph.map -> ../html-full/classgmx_1_1IntegerOption__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/stringcompare_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/stringcompare_8h__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/stringcompare_8h__incl.map -> ../html-full/stringcompare_8h__incl.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1NotImplementedError__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1NotImplementedError__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1NotImplementedError__coll__graph.map -> ../html-full/classgmx_1_1NotImplementedError__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1NotImplementedError__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1NotImplementedError__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1NotImplementedError__inherit__graph.map -> ../html-full/classgmx_1_1NotImplementedError__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1NotImplementedError__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1NotImplementedError__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1NotImplementedError__coll__graph.map -> ../html-full/classgmx_1_1NotImplementedError__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1Int64Option__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1Int64Option__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1Int64Option__inherit__graph.map -> ../html-full/classgmx_1_1Int64Option__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1Int64Option__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1Int64Option__coll__graph.map @@ -82486,10 +82516,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/manyautocorrelation_8h__incl.map -> ../html-full/manyautocorrelation_8h__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1APIError__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1APIError__inherit__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1APIError__inherit__graph.map -> ../html-full/classgmx_1_1APIError__inherit__graph.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1FloatOption__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1FloatOption__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1FloatOption__coll__graph.map -> ../html-full/classgmx_1_1FloatOption__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1FloatOption__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1FloatOption__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1FloatOption__inherit__graph.map -> ../html-full/classgmx_1_1FloatOption__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1FloatOption__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1FloatOption__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1FloatOption__coll__graph.map -> ../html-full/classgmx_1_1FloatOption__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/pairs_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/pairs_8h__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/pairs_8h__incl.map -> ../html-full/pairs_8h__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1InvalidInputError__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1InvalidInputError__coll__graph.map @@ -82500,10 +82530,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/energyhistory_8h__incl.map -> ../html-full/energyhistory_8h__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/replicaexchange_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/replicaexchange_8h__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/replicaexchange_8h__incl.map -> ../html-full/replicaexchange_8h__incl.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1Options__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1Options__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1Options__coll__graph.map -> ../html-full/classgmx_1_1Options__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1Options__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1Options__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1Options__inherit__graph.map -> ../html-full/classgmx_1_1Options__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1Options__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1Options__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1Options__coll__graph.map -> ../html-full/classgmx_1_1Options__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/atomsbuilder_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/atomsbuilder_8h__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/atomsbuilder_8h__incl.map -> ../html-full/atomsbuilder_8h__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/refdata_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/refdata_8h__incl.map @@ -82532,10 +82562,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/dir_5391a40c18b9d17ef33891155eb7da13_dep.map -> ../html-full/dir_5391a40c18b9d17ef33891155eb7da13_dep.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/impl__reference__simd4__float_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/impl__reference__simd4__float_8h__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/impl__reference__simd4__float_8h__incl.map -> ../html-full/impl__reference__simd4__float_8h__incl.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionsModifyingTypeVisitor__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1OptionsModifyingTypeVisitor__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionsModifyingTypeVisitor__coll__graph.map -> ../html-full/classgmx_1_1OptionsModifyingTypeVisitor__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionsModifyingTypeVisitor__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1OptionsModifyingTypeVisitor__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionsModifyingTypeVisitor__inherit__graph.map -> ../html-full/classgmx_1_1OptionsModifyingTypeVisitor__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionsModifyingTypeVisitor__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1OptionsModifyingTypeVisitor__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionsModifyingTypeVisitor__coll__graph.map -> ../html-full/classgmx_1_1OptionsModifyingTypeVisitor__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/impl__reference__simd__float_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/impl__reference__simd__float_8h__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/impl__reference__simd__float_8h__incl.map -> ../html-full/impl__reference__simd__float_8h__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/form_35.png -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/form_42.png @@ -82568,10 +82598,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_40.map -> ../html-full/inherit_graph_96.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_285.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_538.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_285.map -> ../html-full/inherit_graph_538.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1ThreeFry2x64__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1ThreeFry2x64__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1ThreeFry2x64__inherit__graph.map -> ../html-full/classgmx_1_1ThreeFry2x64__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1ThreeFry2x64__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1ThreeFry2x64__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1ThreeFry2x64__coll__graph.map -> ../html-full/classgmx_1_1ThreeFry2x64__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1ThreeFry2x64__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1ThreeFry2x64__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1ThreeFry2x64__inherit__graph.map -> ../html-full/classgmx_1_1ThreeFry2x64__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionStorageTemplate__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1OptionStorageTemplate__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionStorageTemplate__coll__graph.map -> ../html-full/classgmx_1_1OptionStorageTemplate__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_236.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_418.map @@ -82606,10 +82636,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_305.map -> ../html-full/inherit_graph_615.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_51.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_117.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_51.map -> ../html-full/inherit_graph_117.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1test_1_1TestFileOutputRedirector__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1test_1_1TestFileOutputRedirector__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1test_1_1TestFileOutputRedirector__coll__graph.map -> ../html-full/classgmx_1_1test_1_1TestFileOutputRedirector__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1test_1_1TestFileOutputRedirector__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1test_1_1TestFileOutputRedirector__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1test_1_1TestFileOutputRedirector__inherit__graph.map -> ../html-full/classgmx_1_1test_1_1TestFileOutputRedirector__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1test_1_1TestFileOutputRedirector__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1test_1_1TestFileOutputRedirector__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1test_1_1TestFileOutputRedirector__coll__graph.map -> ../html-full/classgmx_1_1test_1_1TestFileOutputRedirector__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_142.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_244.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_142.map -> ../html-full/inherit_graph_244.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_131.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_230.map @@ -82636,10 +82666,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_239.map -> ../html-full/inherit_graph_426.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/listed-forces_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/listed-forces_8h__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/listed-forces_8h__incl.map -> ../html-full/listed-forces_8h__incl.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionsTypeVisitor__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1OptionsTypeVisitor__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionsTypeVisitor__inherit__graph.map -> ../html-full/classgmx_1_1OptionsTypeVisitor__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionsTypeVisitor__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1OptionsTypeVisitor__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionsTypeVisitor__coll__graph.map -> ../html-full/classgmx_1_1OptionsTypeVisitor__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionsTypeVisitor__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1OptionsTypeVisitor__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionsTypeVisitor__inherit__graph.map -> ../html-full/classgmx_1_1OptionsTypeVisitor__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/structgmx_1_1OpenClTraits_3_01cl__command__queue_01_4__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/structgmx_1_1OpenClTraits_3_01cl__command__queue_01_4__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/structgmx_1_1OpenClTraits_3_01cl__command__queue_01_4__coll__graph.map -> ../html-full/structgmx_1_1OpenClTraits_3_01cl__command__queue_01_4__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/structgmx_1_1OpenClTraits_3_01cl__command__queue_01_4__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/structgmx_1_1OpenClTraits_3_01cl__command__queue_01_4__coll__graph.map @@ -82662,10 +82692,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_17.map -> ../html-full/inherit_graph_58.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_24.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_67.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_24.map -> ../html-full/inherit_graph_67.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1test_1_1FilteringExactTextMatch__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1test_1_1FilteringExactTextMatch__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1test_1_1FilteringExactTextMatch__inherit__graph.map -> ../html-full/classgmx_1_1test_1_1FilteringExactTextMatch__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1test_1_1FilteringExactTextMatch__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1test_1_1FilteringExactTextMatch__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1test_1_1FilteringExactTextMatch__coll__graph.map -> ../html-full/classgmx_1_1test_1_1FilteringExactTextMatch__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1test_1_1FilteringExactTextMatch__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1test_1_1FilteringExactTextMatch__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1test_1_1FilteringExactTextMatch__inherit__graph.map -> ../html-full/classgmx_1_1test_1_1FilteringExactTextMatch__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_164.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_268.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_164.map -> ../html-full/inherit_graph_268.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_28.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_71.map @@ -82726,10 +82756,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_263.map -> ../html-full/inherit_graph_473.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_58.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_132.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_58.map -> ../html-full/inherit_graph_132.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SelectionFileOptionInfo__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SelectionFileOptionInfo__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SelectionFileOptionInfo__inherit__graph.map -> ../html-full/classgmx_1_1SelectionFileOptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SelectionFileOptionInfo__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SelectionFileOptionInfo__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SelectionFileOptionInfo__coll__graph.map -> ../html-full/classgmx_1_1SelectionFileOptionInfo__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SelectionFileOptionInfo__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SelectionFileOptionInfo__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SelectionFileOptionInfo__inherit__graph.map -> ../html-full/classgmx_1_1SelectionFileOptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_19.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_60.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_19.map -> ../html-full/inherit_graph_60.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/threadaffinity_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/threadaffinity_8h__incl.map @@ -82770,10 +82800,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/helpwritercontext_8h__incl.map -> ../html-full/helpwritercontext_8h__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_244.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_432.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_244.map -> ../html-full/inherit_graph_432.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionTemplate__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1OptionTemplate__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionTemplate__inherit__graph.map -> ../html-full/classgmx_1_1OptionTemplate__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionTemplate__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1OptionTemplate__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionTemplate__coll__graph.map -> ../html-full/classgmx_1_1OptionTemplate__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionTemplate__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1OptionTemplate__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionTemplate__inherit__graph.map -> ../html-full/classgmx_1_1OptionTemplate__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_180.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_287.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_180.map -> ../html-full/inherit_graph_287.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_250.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_453.map @@ -82804,10 +82834,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/structgmx_1_1OpenClTraits_3_01cl__kernel_01_4__inherit__graph.map -> ../html-full/structgmx_1_1OpenClTraits_3_01cl__kernel_01_4__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_12.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_50.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_12.map -> ../html-full/inherit_graph_50.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1test_1_1ExactTextMatch__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1test_1_1ExactTextMatch__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1test_1_1ExactTextMatch__inherit__graph.map -> ../html-full/classgmx_1_1test_1_1ExactTextMatch__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1test_1_1ExactTextMatch__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1test_1_1ExactTextMatch__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1test_1_1ExactTextMatch__coll__graph.map -> ../html-full/classgmx_1_1test_1_1ExactTextMatch__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1test_1_1ExactTextMatch__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1test_1_1ExactTextMatch__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1test_1_1ExactTextMatch__inherit__graph.map -> ../html-full/classgmx_1_1test_1_1ExactTextMatch__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/bonded_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/bonded_8h__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/bonded_8h__incl.map -> ../html-full/bonded_8h__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_221.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_382.map @@ -82854,10 +82884,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_183.map -> ../html-full/inherit_graph_325.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/form_24.png -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/form_31.png changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/form_24.png -> ../html-full/form_31.png -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1FileNameOptionInfo__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1FileNameOptionInfo__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1FileNameOptionInfo__coll__graph.map -> ../html-full/classgmx_1_1FileNameOptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1FileNameOptionInfo__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1FileNameOptionInfo__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1FileNameOptionInfo__inherit__graph.map -> ../html-full/classgmx_1_1FileNameOptionInfo__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1FileNameOptionInfo__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1FileNameOptionInfo__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1FileNameOptionInfo__coll__graph.map -> ../html-full/classgmx_1_1FileNameOptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/cmdlineparser_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/cmdlineparser_8h__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/cmdlineparser_8h__incl.map -> ../html-full/cmdlineparser_8h__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_74.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_152.map @@ -82878,10 +82908,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_292.map -> ../html-full/inherit_graph_556.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_171.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_275.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_171.map -> ../html-full/inherit_graph_275.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1BooleanOptionInfo__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1BooleanOptionInfo__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1BooleanOptionInfo__coll__graph.map -> ../html-full/classgmx_1_1BooleanOptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1BooleanOptionInfo__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1BooleanOptionInfo__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1BooleanOptionInfo__inherit__graph.map -> ../html-full/classgmx_1_1BooleanOptionInfo__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1BooleanOptionInfo__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1BooleanOptionInfo__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1BooleanOptionInfo__coll__graph.map -> ../html-full/classgmx_1_1BooleanOptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_189.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_330.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_189.map -> ../html-full/inherit_graph_330.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_271.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_486.map @@ -82982,10 +83012,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_197.map -> ../html-full/inherit_graph_358.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_89.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_172.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_89.map -> ../html-full/inherit_graph_172.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1Int64OptionInfo__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1Int64OptionInfo__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1Int64OptionInfo__coll__graph.map -> ../html-full/classgmx_1_1Int64OptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1Int64OptionInfo__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1Int64OptionInfo__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1Int64OptionInfo__inherit__graph.map -> ../html-full/classgmx_1_1Int64OptionInfo__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1Int64OptionInfo__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1Int64OptionInfo__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1Int64OptionInfo__coll__graph.map -> ../html-full/classgmx_1_1Int64OptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_81.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_164.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_81.map -> ../html-full/inherit_graph_164.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1FloatOptionInfo__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1FloatOptionInfo__coll__graph.map @@ -82994,10 +83024,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1FloatOptionInfo__inherit__graph.map -> ../html-full/classgmx_1_1FloatOptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_187.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_328.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_187.map -> ../html-full/inherit_graph_328.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1test_1_1ConfMatch__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1test_1_1ConfMatch__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1test_1_1ConfMatch__coll__graph.map -> ../html-full/classgmx_1_1test_1_1ConfMatch__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1test_1_1ConfMatch__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1test_1_1ConfMatch__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1test_1_1ConfMatch__inherit__graph.map -> ../html-full/classgmx_1_1test_1_1ConfMatch__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1test_1_1ConfMatch__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1test_1_1ConfMatch__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1test_1_1ConfMatch__coll__graph.map -> ../html-full/classgmx_1_1test_1_1ConfMatch__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/structgmx_1_1HardwareTopology_1_1Machine__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/structgmx_1_1HardwareTopology_1_1Machine__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/structgmx_1_1HardwareTopology_1_1Machine__coll__graph.map -> ../html-full/structgmx_1_1HardwareTopology_1_1Machine__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/crosscorr_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/crosscorr_8h__incl.map @@ -83016,20 +83046,20 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_261.map -> ../html-full/inherit_graph_471.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_174.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_278.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_174.map -> ../html-full/inherit_graph_278.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1EnumOptionInfo__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1EnumOptionInfo__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1EnumOptionInfo__inherit__graph.map -> ../html-full/classgmx_1_1EnumOptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1EnumOptionInfo__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1EnumOptionInfo__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1EnumOptionInfo__coll__graph.map -> ../html-full/classgmx_1_1EnumOptionInfo__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1EnumOptionInfo__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1EnumOptionInfo__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1EnumOptionInfo__inherit__graph.map -> ../html-full/classgmx_1_1EnumOptionInfo__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_79.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_159.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_79.map -> ../html-full/inherit_graph_159.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_249.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_451.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_249.map -> ../html-full/inherit_graph_451.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_47.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_110.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_47.map -> ../html-full/inherit_graph_110.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1test_1_1XvgMatch__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1test_1_1XvgMatch__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1test_1_1XvgMatch__inherit__graph.map -> ../html-full/classgmx_1_1test_1_1XvgMatch__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1test_1_1XvgMatch__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1test_1_1XvgMatch__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1test_1_1XvgMatch__coll__graph.map -> ../html-full/classgmx_1_1test_1_1XvgMatch__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1test_1_1XvgMatch__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1test_1_1XvgMatch__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1test_1_1XvgMatch__inherit__graph.map -> ../html-full/classgmx_1_1test_1_1XvgMatch__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/mdmodules_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/mdmodules_8h__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/mdmodules_8h__incl.map -> ../html-full/mdmodules_8h__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_218.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_379.map @@ -83080,10 +83110,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/oclraii_8h__incl.map -> ../html-full/oclraii_8h__incl.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_286.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_539.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_286.map -> ../html-full/inherit_graph_539.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SelectionFileOption__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SelectionFileOption__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SelectionFileOption__coll__graph.map -> ../html-full/classgmx_1_1SelectionFileOption__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SelectionFileOption__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SelectionFileOption__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SelectionFileOption__inherit__graph.map -> ../html-full/classgmx_1_1SelectionFileOption__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SelectionFileOption__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1SelectionFileOption__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1SelectionFileOption__coll__graph.map -> ../html-full/classgmx_1_1SelectionFileOption__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_280.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_514.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_280.map -> ../html-full/inherit_graph_514.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_145.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_247.map @@ -83146,10 +83176,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_23.map -> ../html-full/inherit_graph_66.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_144.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_246.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_144.map -> ../html-full/inherit_graph_246.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1test_1_1TestException__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1test_1_1TestException__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1test_1_1TestException__coll__graph.map -> ../html-full/classgmx_1_1test_1_1TestException__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1test_1_1TestException__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1test_1_1TestException__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1test_1_1TestException__inherit__graph.map -> ../html-full/classgmx_1_1test_1_1TestException__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1test_1_1TestException__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1test_1_1TestException__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1test_1_1TestException__coll__graph.map -> ../html-full/classgmx_1_1test_1_1TestException__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_133.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_232.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_133.map -> ../html-full/inherit_graph_232.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/testfilemanager_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/testfilemanager_8h__incl.map @@ -83162,10 +83192,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_65.map -> ../html-full/inherit_graph_140.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/strdb_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/strdb_8h__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/strdb_8h__incl.map -> ../html-full/strdb_8h__incl.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionSection__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1OptionSection__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionSection__coll__graph.map -> ../html-full/classgmx_1_1OptionSection__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionSection__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1OptionSection__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionSection__inherit__graph.map -> ../html-full/classgmx_1_1OptionSection__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionSection__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1OptionSection__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1OptionSection__coll__graph.map -> ../html-full/classgmx_1_1OptionSection__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AbstractCompositeHelpTopic__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1AbstractCompositeHelpTopic__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1AbstractCompositeHelpTopic__coll__graph.map -> ../html-full/classgmx_1_1AbstractCompositeHelpTopic__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/gmxregex_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/gmxregex_8h__incl.map @@ -83292,10 +83322,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_217.map -> ../html-full/inherit_graph_378.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_0.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_26.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_0.map -> ../html-full/inherit_graph_26.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1FileNameOptionManager__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1FileNameOptionManager__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1FileNameOptionManager__coll__graph.map -> ../html-full/classgmx_1_1FileNameOptionManager__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1FileNameOptionManager__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1FileNameOptionManager__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1FileNameOptionManager__inherit__graph.map -> ../html-full/classgmx_1_1FileNameOptionManager__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1FileNameOptionManager__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1FileNameOptionManager__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1FileNameOptionManager__coll__graph.map -> ../html-full/classgmx_1_1FileNameOptionManager__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_35.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_91.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_35.map -> ../html-full/inherit_graph_91.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_193.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_337.map @@ -83316,10 +83346,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_257.map -> ../html-full/inherit_graph_466.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_94.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_177.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_94.map -> ../html-full/inherit_graph_177.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1RestraintMDModule__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1RestraintMDModule__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1RestraintMDModule__coll__graph.map -> ../html-full/classgmx_1_1RestraintMDModule__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1RestraintMDModule__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1RestraintMDModule__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1RestraintMDModule__inherit__graph.map -> ../html-full/classgmx_1_1RestraintMDModule__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1RestraintMDModule__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1RestraintMDModule__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1RestraintMDModule__coll__graph.map -> ../html-full/classgmx_1_1RestraintMDModule__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_302.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_612.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_302.map -> ../html-full/inherit_graph_612.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1RangeError__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1RangeError__coll__graph.map @@ -83374,10 +83404,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_294.map -> ../html-full/inherit_graph_582.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_93.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_176.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_93.map -> ../html-full/inherit_graph_176.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1StringOutputStream__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1StringOutputStream__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1StringOutputStream__coll__graph.map -> ../html-full/classgmx_1_1StringOutputStream__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1StringOutputStream__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1StringOutputStream__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1StringOutputStream__inherit__graph.map -> ../html-full/classgmx_1_1StringOutputStream__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1StringOutputStream__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1StringOutputStream__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1StringOutputStream__coll__graph.map -> ../html-full/classgmx_1_1StringOutputStream__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1ForceWithVirial__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1ForceWithVirial__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1ForceWithVirial__coll__graph.map -> ../html-full/classgmx_1_1ForceWithVirial__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1APIError__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1APIError__coll__graph.map @@ -83428,10 +83458,10 @@ changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1PotentialPointData__coll__graph.map -> ../html-full/classgmx_1_1PotentialPointData__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/dlb_8h__incl.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/dlb_8h__incl.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/dlb_8h__incl.map -> ../html-full/dlb_8h__incl.map -absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1TextOutputFile__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1TextOutputFile__coll__graph.map -changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1TextOutputFile__inherit__graph.map -> ../html-full/classgmx_1_1TextOutputFile__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1TextOutputFile__coll__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1TextOutputFile__coll__graph.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1TextOutputFile__coll__graph.map -> ../html-full/classgmx_1_1TextOutputFile__coll__graph.map +absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1TextOutputFile__inherit__graph.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/classgmx_1_1TextOutputFile__coll__graph.map +changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/classgmx_1_1TextOutputFile__inherit__graph.map -> ../html-full/classgmx_1_1TextOutputFile__coll__graph.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_298.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_602.map changed: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_298.map -> ../html-full/inherit_graph_602.map absolute: /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-lib/inherit_graph_198.map -> /build/gromacs-2019.1/debian/gromacs-data/usr/share/doc/gromacs/html/doxygen/html-full/inherit_graph_359.map @@ -86209,10 +86239,10 @@ dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'gromacs' in '../gromacs_2019.1-1_arm64.deb'. -dpkg-deb: building package 'gromacs-mpich-dbgsym' in '../gromacs-mpich-dbgsym_2019.1-1_arm64.deb'. dpkg-deb: building package 'libgromacs4' in '../libgromacs4_2019.1-1_arm64.deb'. -dpkg-deb: building package 'gromacs-openmpi-dbgsym' in '../gromacs-openmpi-dbgsym_2019.1-1_arm64.deb'. dpkg-deb: building package 'libgromacs-dev' in '../libgromacs-dev_2019.1-1_arm64.deb'. +dpkg-deb: building package 'gromacs-mpich-dbgsym' in '../gromacs-mpich-dbgsym_2019.1-1_arm64.deb'. +dpkg-deb: building package 'gromacs-openmpi-dbgsym' in '../gromacs-openmpi-dbgsym_2019.1-1_arm64.deb'. dpkg-deb: building package 'gromacs-dbgsym' in '../gromacs-dbgsym_2019.1-1_arm64.deb'. dpkg-deb: building package 'gromacs-mpich' in '../gromacs-mpich_2019.1-1_arm64.deb'. dpkg-deb: building package 'gromacs-openmpi' in '../gromacs-openmpi_2019.1-1_arm64.deb'. @@ -86224,12 +86254,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/5254/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/5254/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2947 and its subdirectories -I: Current time: Sun Mar 13 14:04:26 -12 2022 -I: pbuilder-time-stamp: 1647223466 +I: removing directory /srv/workspace/pbuilder/5254 and its subdirectories +I: Current time: Tue Feb 9 13:19:50 +14 2021 +I: pbuilder-time-stamp: 1612826390