Diff of the two buildlogs: -- --- b1/build.log 2020-08-07 00:38:58.139749822 +0000 +++ b2/build.log 2020-08-07 00:48:19.062356990 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Aug 6 12:33:02 -12 2020 -I: pbuilder-time-stamp: 1596760382 +I: Current time: Thu Sep 9 21:02:10 +14 2021 +I: pbuilder-time-stamp: 1631170930 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/var/lib/jenkins/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Thu Jul 26 01:37:24 2018 -12 +gpgv: Signature made Fri Jul 27 03:37:24 2018 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -27,136 +27,170 @@ dpkg-source: info: unpacking freecontact_1.0.21-7.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/25314/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/7982/tmp/hooks/D01_modify_environment starting +debug: Running on codethink-sled9-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/7982/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/7982/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.0.3(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' - DISTRIBUTION='' - HOME='/var/lib/jenkins' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/var/lib/jenkins + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='25314' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=7982 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.eRusWpfvLV/pbuilderrc_freg --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.eRusWpfvLV/b1 --logfile b1/build.log freecontact_1.0.21-7.dsc' - SUDO_GID='117' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - USERNAME='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.16:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.eRusWpfvLV/pbuilderrc_jAPv --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.eRusWpfvLV/b2 --logfile b2/build.log freecontact_1.0.21-7.dsc' + SUDO_GID=117 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + USERNAME=root + _='I: set' + http_proxy=http://192.168.101.16:3128 I: uname -a - Linux codethink-sled10-arm64 4.4.0-186-generic #216-Ubuntu SMP Wed Jul 1 05:35:21 UTC 2020 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.4.0-186-generic #216-Ubuntu SMP Wed Jul 1 05:35:21 UTC 2020 aarch64 GNU/Linux I: ls -l /bin total 4928 - -rwxr-xr-x 1 root root 1216928 Apr 17 2019 bash - -rwxr-xr-x 3 root root 34808 Jul 10 2019 bunzip2 - -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzcat - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep - -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzip2 - -rwxr-xr-x 1 root root 14264 Jul 10 2019 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore - -rwxr-xr-x 1 root root 35576 Feb 28 2019 cat - -rwxr-xr-x 1 root root 60256 Feb 28 2019 chgrp - -rwxr-xr-x 1 root root 56096 Feb 28 2019 chmod - -rwxr-xr-x 1 root root 64368 Feb 28 2019 chown - -rwxr-xr-x 1 root root 134632 Feb 28 2019 cp - -rwxr-xr-x 1 root root 129536 Jan 17 2019 dash - -rwxr-xr-x 1 root root 97136 Feb 28 2019 date - -rwxr-xr-x 1 root root 76736 Feb 28 2019 dd - -rwxr-xr-x 1 root root 93752 Feb 28 2019 df - -rwxr-xr-x 1 root root 138848 Feb 28 2019 dir - -rwxr-xr-x 1 root root 75984 Jan 9 2019 dmesg - lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname - -rwxr-xr-x 1 root root 31368 Feb 28 2019 echo - -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep - -rwxr-xr-x 1 root root 27256 Feb 28 2019 false - -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep - -rwxr-xr-x 1 root root 68792 Jan 9 2019 findmnt - -rwsr-xr-x 1 root root 34824 Apr 22 07:38 fusermount - -rwxr-xr-x 1 root root 174304 Jan 7 2019 grep - -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip - -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe - -rwxr-xr-x 1 root root 89656 Jan 5 2019 gzip - -rwxr-xr-x 1 root root 18440 Sep 26 2018 hostname - -rwxr-xr-x 1 root root 64472 Feb 28 2019 ln - -rwxr-xr-x 1 root root 52544 Jul 26 2018 login - -rwxr-xr-x 1 root root 138848 Feb 28 2019 ls - -rwxr-xr-x 1 root root 108552 Jan 9 2019 lsblk - -rwxr-xr-x 1 root root 76840 Feb 28 2019 mkdir - -rwxr-xr-x 1 root root 64480 Feb 28 2019 mknod - -rwxr-xr-x 1 root root 39736 Feb 28 2019 mktemp - -rwxr-xr-x 1 root root 38840 Jan 9 2019 more - -rwsr-xr-x 1 root root 47112 Jan 9 2019 mount - -rwxr-xr-x 1 root root 14344 Jan 9 2019 mountpoint - -rwxr-xr-x 1 root root 138736 Feb 28 2019 mv - lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 35560 Feb 28 2019 pwd - lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash - -rwxr-xr-x 1 root root 43712 Feb 28 2019 readlink - -rwxr-xr-x 1 root root 68440 Feb 28 2019 rm - -rwxr-xr-x 1 root root 39624 Feb 28 2019 rmdir - -rwxr-xr-x 1 root root 19144 Jan 21 2019 run-parts - -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Aug 4 20:25 sh -> dash - -rwxr-xr-x 1 root root 31384 Feb 28 2019 sleep - -rwxr-xr-x 1 root root 72480 Feb 28 2019 stty - -rwsr-xr-x 1 root root 59424 Jan 9 2019 su - -rwxr-xr-x 1 root root 31416 Feb 28 2019 sync - -rwxr-xr-x 1 root root 449416 Apr 23 2019 tar - -rwxr-xr-x 1 root root 10560 Jan 21 2019 tempfile - -rwxr-xr-x 1 root root 88968 Feb 28 2019 touch - -rwxr-xr-x 1 root root 27256 Feb 28 2019 true - -rwxr-xr-x 1 root root 14264 Apr 22 07:38 ulockmgr_server - -rwsr-xr-x 1 root root 30728 Jan 9 2019 umount - -rwxr-xr-x 1 root root 31384 Feb 28 2019 uname - -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress - -rwxr-xr-x 1 root root 138848 Feb 28 2019 vdir - -rwxr-xr-x 1 root root 34824 Jan 9 2019 wdctl - -rwxr-xr-x 1 root root 946 Jan 21 2019 which - lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat - -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp - -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff - -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep - -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep - -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce - -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep - -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless - -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore - -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew -I: user script /srv/workspace/pbuilder/25314/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1216928 Apr 18 2019 bash + -rwxr-xr-x 3 root root 34808 Jul 11 2019 bunzip2 + -rwxr-xr-x 3 root root 34808 Jul 11 2019 bzcat + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep + -rwxr-xr-x 3 root root 34808 Jul 11 2019 bzip2 + -rwxr-xr-x 1 root root 14264 Jul 11 2019 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore + -rwxr-xr-x 1 root root 35576 Mar 1 2019 cat + -rwxr-xr-x 1 root root 60256 Mar 1 2019 chgrp + -rwxr-xr-x 1 root root 56096 Mar 1 2019 chmod + -rwxr-xr-x 1 root root 64368 Mar 1 2019 chown + -rwxr-xr-x 1 root root 134632 Mar 1 2019 cp + -rwxr-xr-x 1 root root 129536 Jan 18 2019 dash + -rwxr-xr-x 1 root root 97136 Mar 1 2019 date + -rwxr-xr-x 1 root root 76736 Mar 1 2019 dd + -rwxr-xr-x 1 root root 93752 Mar 1 2019 df + -rwxr-xr-x 1 root root 138848 Mar 1 2019 dir + -rwxr-xr-x 1 root root 75984 Jan 10 2019 dmesg + lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname + -rwxr-xr-x 1 root root 31368 Mar 1 2019 echo + -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep + -rwxr-xr-x 1 root root 27256 Mar 1 2019 false + -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep + -rwxr-xr-x 1 root root 68792 Jan 10 2019 findmnt + -rwsr-xr-x 1 root root 34824 Apr 23 2020 fusermount + -rwxr-xr-x 1 root root 174304 Jan 8 2019 grep + -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip + -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe + -rwxr-xr-x 1 root root 89656 Jan 6 2019 gzip + -rwxr-xr-x 1 root root 18440 Sep 27 2018 hostname + -rwxr-xr-x 1 root root 64472 Mar 1 2019 ln + -rwxr-xr-x 1 root root 52544 Jul 27 2018 login + -rwxr-xr-x 1 root root 138848 Mar 1 2019 ls + -rwxr-xr-x 1 root root 108552 Jan 10 2019 lsblk + -rwxr-xr-x 1 root root 76840 Mar 1 2019 mkdir + -rwxr-xr-x 1 root root 64480 Mar 1 2019 mknod + -rwxr-xr-x 1 root root 39736 Mar 1 2019 mktemp + -rwxr-xr-x 1 root root 38840 Jan 10 2019 more + -rwsr-xr-x 1 root root 47112 Jan 10 2019 mount + -rwxr-xr-x 1 root root 14344 Jan 10 2019 mountpoint + -rwxr-xr-x 1 root root 138736 Mar 1 2019 mv + lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 35560 Mar 1 2019 pwd + lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash + -rwxr-xr-x 1 root root 43712 Mar 1 2019 readlink + -rwxr-xr-x 1 root root 68440 Mar 1 2019 rm + -rwxr-xr-x 1 root root 39624 Mar 1 2019 rmdir + -rwxr-xr-x 1 root root 19144 Jan 22 2019 run-parts + -rwxr-xr-x 1 root root 114016 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Sep 9 21:02 sh -> bash + lrwxrwxrwx 1 root root 4 Sep 8 04:48 sh.distrib -> dash + -rwxr-xr-x 1 root root 31384 Mar 1 2019 sleep + -rwxr-xr-x 1 root root 72480 Mar 1 2019 stty + -rwsr-xr-x 1 root root 59424 Jan 10 2019 su + -rwxr-xr-x 1 root root 31416 Mar 1 2019 sync + -rwxr-xr-x 1 root root 449416 Apr 24 2019 tar + -rwxr-xr-x 1 root root 10560 Jan 22 2019 tempfile + -rwxr-xr-x 1 root root 88968 Mar 1 2019 touch + -rwxr-xr-x 1 root root 27256 Mar 1 2019 true + -rwxr-xr-x 1 root root 14264 Apr 23 2020 ulockmgr_server + -rwsr-xr-x 1 root root 30728 Jan 10 2019 umount + -rwxr-xr-x 1 root root 31384 Mar 1 2019 uname + -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress + -rwxr-xr-x 1 root root 138848 Mar 1 2019 vdir + -rwxr-xr-x 1 root root 34824 Jan 10 2019 wdctl + -rwxr-xr-x 1 root root 946 Jan 22 2019 which + lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat + -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp + -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff + -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep + -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep + -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce + -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep + -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless + -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore + -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew +I: user script /srv/workspace/pbuilder/7982/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -288,7 +322,7 @@ Get: 70 http://deb.debian.org/debian buster/main arm64 libxerces-c3.2 arm64 3.2.2+debian-1+b1 [783 kB] Get: 71 http://deb.debian.org/debian buster/main arm64 libxerces-c-dev arm64 3.2.2+debian-1+b1 [1626 kB] Get: 72 http://deb.debian.org/debian buster/main arm64 xsdcxx arm64 4.0.0-8 [1773 kB] -Fetched 79.4 MB in 3s (27.4 MB/s) +Fetched 79.4 MB in 3s (30.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19168 files and directories currently installed.) @@ -605,7 +639,7 @@ fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/freecontact-1.0.21/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/freecontact-1.0.21/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package freecontact dpkg-buildpackage: info: source version 1.0.21-7 dpkg-buildpackage: info: source distribution unstable @@ -1121,8 +1155,8 @@ make[2]: Entering directory '/build/freecontact-1.0.21/lib' make all-am make[3]: Entering directory '/build/freecontact-1.0.21/lib' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wall -fvisibility=hidden -falign-labels -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -freorder-blocks -freorder-functions -frerun-cse-after-loop -fsched-pressure -fschedule-insns -fschedule-insns2 -fsection-anchors -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funswitch-loops -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -ffile-prefix-map=/build/freecontact-1.0.21=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libfreecontact_la-freecontact.lo `test -f 'freecontact.cpp' || echo './'`freecontact.cpp -/bin/bash ../libtool --tag=FC --mode=compile gfortran -fvisibility=hidden -falign-labels -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -freorder-blocks -freorder-functions -frerun-cse-after-loop -fsched-pressure -fschedule-insns -fschedule-insns2 -fsection-anchors -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funswitch-loops -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -ffile-prefix-map=/build/freecontact-1.0.21=. -fstack-protector-strong -c -o libfreecontact_la-glassofast-real.lo `test -f 'glassofast-real.f90' || echo './'`glassofast-real.f90 +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wall -fvisibility=hidden -falign-labels -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -freorder-blocks -freorder-functions -frerun-cse-after-loop -fsched-pressure -fschedule-insns -fschedule-insns2 -fsection-anchors -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funswitch-loops -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -ffile-prefix-map=/build/freecontact-1.0.21=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libfreecontact_la-freecontact.lo `test -f 'freecontact.cpp' || echo './'`freecontact.cpp +/bin/sh ../libtool --tag=FC --mode=compile gfortran -fvisibility=hidden -falign-labels -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -freorder-blocks -freorder-functions -frerun-cse-after-loop -fsched-pressure -fschedule-insns -fschedule-insns2 -fsection-anchors -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funswitch-loops -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -ffile-prefix-map=/build/freecontact-1.0.21=. -fstack-protector-strong -c -o libfreecontact_la-glassofast-real.lo `test -f 'glassofast-real.f90' || echo './'`glassofast-real.f90 libtool: compile: gfortran -fvisibility=hidden -falign-labels -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -freorder-blocks -freorder-functions -frerun-cse-after-loop -fsched-pressure -fschedule-insns -fschedule-insns2 -fsection-anchors -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funswitch-loops -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -ffile-prefix-map=/build/freecontact-1.0.21=. -fstack-protector-strong -c glassofast-real.f90 -fPIC -o .libs/libfreecontact_la-glassofast-real.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wall -fvisibility=hidden -falign-labels -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -freorder-blocks -freorder-functions -frerun-cse-after-loop -fsched-pressure -fschedule-insns -fschedule-insns2 -fsection-anchors -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funswitch-loops -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -ffile-prefix-map=/build/freecontact-1.0.21=. -fstack-protector-strong -Wformat -Werror=format-security -c freecontact.cpp -fPIC -DPIC -o .libs/libfreecontact_la-freecontact.o libtool: compile: gfortran -fvisibility=hidden -falign-labels -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -freorder-blocks -freorder-functions -frerun-cse-after-loop -fsched-pressure -fschedule-insns -fschedule-insns2 -fsection-anchors -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funswitch-loops -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -ffile-prefix-map=/build/freecontact-1.0.21=. -fstack-protector-strong -c glassofast-real.f90 -o libfreecontact_la-glassofast-real.o >/dev/null 2>&1 @@ -1202,7 +1236,7 @@ ali_t& ali_t::push(const std::vector& __al) throw (alilen_error) ^~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wall -fvisibility=hidden -falign-labels -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -freorder-blocks -freorder-functions -frerun-cse-after-loop -fsched-pressure -fschedule-insns -fschedule-insns2 -fsection-anchors -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funswitch-loops -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -ffile-prefix-map=/build/freecontact-1.0.21=. -fstack-protector-strong -Wformat -Werror=format-security -c freecontact.cpp -o libfreecontact_la-freecontact.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=link g++ -fopenmp -Wall -fvisibility=hidden -falign-labels -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -freorder-blocks -freorder-functions -frerun-cse-after-loop -fsched-pressure -fschedule-insns -fschedule-insns2 -fsection-anchors -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funswitch-loops -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -ffile-prefix-map=/build/freecontact-1.0.21=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -version-info 0:0:0 -Wl,-z,relro -Wl,-z,now -o libfreecontact.la -rpath /usr/lib/aarch64-linux-gnu libfreecontact_la-freecontact.lo libfreecontact_la-glassofast-real.lo -lrt -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -lgfortran -lm -lblas -llapack +/bin/sh ../libtool --tag=CXX --mode=link g++ -fopenmp -Wall -fvisibility=hidden -falign-labels -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -freorder-blocks -freorder-functions -frerun-cse-after-loop -fsched-pressure -fschedule-insns -fschedule-insns2 -fsection-anchors -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funswitch-loops -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -ffile-prefix-map=/build/freecontact-1.0.21=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -version-info 0:0:0 -Wl,-z,relro -Wl,-z,now -o libfreecontact.la -rpath /usr/lib/aarch64-linux-gnu libfreecontact_la-freecontact.lo libfreecontact_la-glassofast-real.lo -lrt -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -lgfortran -lm -lblas -llapack libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/8/crtbeginS.o .libs/libfreecontact_la-freecontact.o .libs/libfreecontact_la-glassofast-real.o -lrt -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -lgfortran -lblas -llapack -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/8/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu/crtn.o -fopenmp -pthread -g -O2 -fstack-protector-strong -pthread -Wl,-z -Wl,relro -Wl,-z -Wl,now -fopenmp -pthread -Wl,-soname -Wl,libfreecontact.so.0 -o .libs/libfreecontact.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libfreecontact.so.0" && ln -s "libfreecontact.so.0.0.0" "libfreecontact.so.0") libtool: link: (cd ".libs" && rm -f "libfreecontact.so" && ln -s "libfreecontact.so.0.0.0" "libfreecontact.so") @@ -1248,1102 +1282,1268 @@ --hxx-suffix _xsd.hxx --cxx-suffix _xsd.cxx \ freecontact_output.xsd g++ -DHAVE_CONFIG_H -I. -I../lib -I../lib -I../src -I/usr/include -I/usr/include/xercesc -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/freecontact-1.0.21=. -fstack-protector-strong -Wformat -Werror=format-security -c -o freecontact-BioXSD-1.1_xsd.o `test -f 'BioXSD-1.1_xsd.cxx' || echo './'`BioXSD-1.1_xsd.cxx -g++ -DHAVE_CONFIG_H -I. -I../lib -I../lib -I../src -I/usr/include -I/usr/include/xercesc -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/freecontact-1.0.21=. -fstack-protector-strong -Wformat -Werror=format-security -c -o freecontact-freecontact_input_xsd.o `test -f 'freecontact_input_xsd.cxx' || echo './'`freecontact_input_xsd.cxx -g++ -DHAVE_CONFIG_H -I. -I../lib -I../lib -I../src -I/usr/include -I/usr/include/xercesc -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/freecontact-1.0.21=. -fstack-protector-strong -Wformat -Werror=format-security -c -o freecontact-_write_bioxsd.o `test -f '_write_bioxsd.cpp' || echo './'`_write_bioxsd.cpp g++ -DHAVE_CONFIG_H -I. -I../lib -I../lib -I../src -I/usr/include -I/usr/include/xercesc -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/freecontact-1.0.21=. -fstack-protector-strong -Wformat -Werror=format-security -c -o freecontact-freecontact_output_xsd.o `test -f 'freecontact_output_xsd.cxx' || echo './'`freecontact_output_xsd.cxx -In file included from BioXSD-1.1_xsd.cxx:41: +g++ -DHAVE_CONFIG_H -I. -I../lib -I../lib -I../src -I/usr/include -I/usr/include/xercesc -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/freecontact-1.0.21=. -fstack-protector-strong -Wformat -Werror=format-security -c -o freecontact-_write_bioxsd.o `test -f '_write_bioxsd.cpp' || echo './'`_write_bioxsd.cpp +g++ -DHAVE_CONFIG_H -I. -I../lib -I../lib -I../src -I/usr/include -I/usr/include/xercesc -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/freecontact-1.0.21=. -fstack-protector-strong -Wformat -Werror=format-security -c -o freecontact-freecontact_input_xsd.o `test -f 'freecontact_input_xsd.cxx' || echo './'`freecontact_input_xsd.cxx +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:1507:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] sequence (::std::auto_ptr< sequence_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:1585:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] species (::std::auto_ptr< species_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:1665:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] reference (::std::auto_ptr< reference_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:1741:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] name (::std::auto_ptr< name_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:1817:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] note (::std::auto_ptr< note_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:1893:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] translationData (::std::auto_ptr< translationData_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:1969:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:1992:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] BiosequenceRecord (::std::auto_ptr< sequence_type >); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:2105:45: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] GeneralNucleotideSequenceRecord (::std::auto_ptr< sequence_type >); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:2186:44: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] GeneralAminoacidSequenceRecord (::std::auto_ptr< sequence_type >); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:2267:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] NucleotideSequenceRecord (::std::auto_ptr< sequence_type >); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:2348:37: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] AminoacidSequenceRecord (::std::auto_ptr< sequence_type >); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:2611:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] note (::std::auto_ptr< note_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3051:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] pos (::std::auto_ptr< pos_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3109:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] len (::std::auto_ptr< len_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3287:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] min (::std::auto_ptr< min_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3366:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] max (::std::auto_ptr< max_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3442:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] strand (::std::auto_ptr< strand_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3500:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] minCertainty (::std::auto_ptr< minCertainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3567:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] maxCertainty (::std::auto_ptr< maxCertainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3877:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] pos (::std::auto_ptr< pos_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3935:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] bases (::std::auto_ptr< bases_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4110:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] localAlignmentPosition (::std::auto_ptr< localAlignmentPosition_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4186:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4262:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] sequenceReference (::std::auto_ptr< sequenceReference_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4338:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] sequenceName (::std::auto_ptr< sequenceName_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4414:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] species (::std::auto_ptr< species_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4490:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] genomeBuild (::std::auto_ptr< genomeBuild_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4566:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] chromosome (::std::auto_ptr< chromosome_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4644:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4720:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] variantAccession (::std::auto_ptr< variantAccession_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4796:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] variantNote (::std::auto_ptr< variantNote_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:5064:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] reversedDirection (::std::auto_ptr< reversedDirection_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:5589:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] name (::std::auto_ptr< name_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:5798:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] className (::std::auto_ptr< className_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:5938:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] properties (::std::auto_ptr< properties_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:6115:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] specificFeatureName (::std::auto_ptr< specificFeatureName_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:6385:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] note (::std::auto_ptr< note_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:6627:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] appliesToWholeSequence (::std::auto_ptr< appliesToWholeSequence_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:6703:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] position (::std::auto_ptr< position_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:6843:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] occurrenceName (::std::auto_ptr< occurrenceName_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:6919:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] occurrenceNote (::std::auto_ptr< occurrenceNote_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:6995:32: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] featureTypeDetails (::std::auto_ptr< featureTypeDetails_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:7203:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] frame (::std::auto_ptr< frame_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:7279:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] phase (::std::auto_ptr< phase_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:7419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] alignment (::std::auto_ptr< alignment_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:7588:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] referenceSequence (::std::auto_ptr< referenceSequence_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:7742:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] FeatureRecord (::std::auto_ptr< referenceSequence_type >); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:7901:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] predicted (::std::auto_ptr< predicted_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:7977:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] experimental (::std::auto_ptr< experimental_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8130:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] method (::std::auto_ptr< method_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8217:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] MethodResult (::std::auto_ptr< method_type >); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8357:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] methodIdRef (::std::auto_ptr< methodIdRef_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8444:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] Result (::std::auto_ptr< methodIdRef_type >); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8602:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] method (::std::auto_ptr< method_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8678:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] methodIdRef (::std::auto_ptr< methodIdRef_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8818:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] verdict (::std::auto_ptr< verdict_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8973:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] dataReference (::std::auto_ptr< dataReference_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:9113:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] verdict (::std::auto_ptr< verdict_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:9189:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] reliability (::std::auto_ptr< reliability_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:9212:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ExperimentalEvidence (::std::auto_ptr< dataReference_type >); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:9566:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] name (::std::auto_ptr< name_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:9642:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] index (::std::auto_ptr< index_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:9718:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] unit (::std::auto_ptr< unit_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:9794:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] note (::std::auto_ptr< note_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:9974:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] position (::std::auto_ptr< position_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:10032:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] value (::std::auto_ptr< value_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:10108:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:10285:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] pos (::std::auto_ptr< pos_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:10361:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] strand (::std::auto_ptr< strand_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:10419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] certainty (::std::auto_ptr< certainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:10679:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] pos (::std::auto_ptr< pos_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:10755:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] strand (::std::auto_ptr< strand_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:10813:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] certainty (::std::auto_ptr< certainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:11072:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] pos (::std::auto_ptr< pos_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:11148:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] strand (::std::auto_ptr< strand_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:11206:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] certainty (::std::auto_ptr< certainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:11465:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] min (::std::auto_ptr< min_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:11544:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] max (::std::auto_ptr< max_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:11620:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] strand (::std::auto_ptr< strand_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:11678:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] minCertainty (::std::auto_ptr< minCertainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:11745:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] maxCertainty (::std::auto_ptr< maxCertainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:12003:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] max (::std::auto_ptr< max_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:12061:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] certainty (::std::auto_ptr< certainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:12377:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] insertion (::std::auto_ptr< insertion_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:12517:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] nextPoint (::std::auto_ptr< nextPoint_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:12593:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] nextPartition (::std::auto_ptr< nextPartition_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:12669:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] samePoint (::std::auto_ptr< samePoint_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:12745:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] samePartition (::std::auto_ptr< samePartition_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:12821:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] outside (::std::auto_ptr< outside_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13071:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] correspondance (::std::auto_ptr< correspondance_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13211:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] insertion (::std::auto_ptr< insertion_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13351:39: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] explicitSequenceReference (::std::auto_ptr< explicitSequenceReference_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13597:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] reference (::std::auto_ptr< reference_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13832:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] geneticCode (::std::auto_ptr< geneticCode_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13908:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] phase (::std::auto_ptr< phase_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13984:42: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] reversedTranslationDirection (::std::auto_ptr< reversedTranslationDirection_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1507:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + sequence (::std::auto_ptr< sequence_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1585:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + species (::std::auto_ptr< species_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1665:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + reference (::std::auto_ptr< reference_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1741:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + name (::std::auto_ptr< name_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14226:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] dbName (::std::auto_ptr< dbName_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1817:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + note (::std::auto_ptr< note_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14304:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] dbUri (::std::auto_ptr< dbUri_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14380:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] dbVersion (::std::auto_ptr< dbVersion_type > p); ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1893:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + translationData (::std::auto_ptr< translationData_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -2352,838 +2552,758 @@ template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1969:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > p); + ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14511:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] wsdl (::std::auto_ptr< wsdl_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1992:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + BiosequenceRecord (::std::auto_ptr< sequence_type >); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14587:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] wsdlService (::std::auto_ptr< wsdlService_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14663:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] wsdlPort (::std::auto_ptr< wsdlPort_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14739:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14815:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14894:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] webserviceDate (::std::auto_ptr< webserviceDate_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:2105:45: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + GeneralNucleotideSequenceRecord (::std::auto_ptr< sequence_type >); + ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15075:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] accession (::std::auto_ptr< accession_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15151:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] entryUri (::std::auto_ptr< entryUri_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15227:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] entryVersion (::std::auto_ptr< entryVersion_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15305:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] date (::std::auto_ptr< date_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15481:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ontologyName (::std::auto_ptr< ontologyName_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15559:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ontologyUri (::std::auto_ptr< ontologyUri_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:2186:44: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + GeneralAminoacidSequenceRecord (::std::auto_ptr< sequence_type >); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15635:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ontologyVersion (::std::auto_ptr< ontologyVersion_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:2267:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + NucleotideSequenceRecord (::std::auto_ptr< sequence_type >); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:2348:37: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + AminoacidSequenceRecord (::std::auto_ptr< sequence_type >); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15870:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] accession (::std::auto_ptr< accession_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15946:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] conceptUri (::std::auto_ptr< conceptUri_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16028:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] term (::std::auto_ptr< term_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16207:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] speciesName (::std::auto_ptr< speciesName_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16283:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] speciesNote (::std::auto_ptr< speciesNote_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16459:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16538:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] supersequence (::std::auto_ptr< supersequence_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16617:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] supersequenceName (::std::auto_ptr< supersequenceName_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16693:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] sequenceVersion (::std::auto_ptr< sequenceVersion_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16769:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] variantAccession (::std::auto_ptr< variantAccession_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16845:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] variantNote (::std::auto_ptr< variantNote_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:2611:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + note (::std::auto_ptr< note_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17130:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] name (::std::auto_ptr< name_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17206:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] uri (::std::auto_ptr< uri_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17282:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] version (::std::auto_ptr< version_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17358:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] date (::std::auto_ptr< date_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17434:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] wsdl (::std::auto_ptr< wsdl_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1507:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - sequence (::std::auto_ptr< sequence_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17510:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] wsdlService (::std::auto_ptr< wsdlService_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17586:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] wsdlPort (::std::auto_ptr< wsdlPort_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1585:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - species (::std::auto_ptr< species_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17662:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1665:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - reference (::std::auto_ptr< reference_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17738:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1741:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - name (::std::auto_ptr< name_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17817:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] webserviceDate (::std::auto_ptr< webserviceDate_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1817:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - note (::std::auto_ptr< note_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1893:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - translationData (::std::auto_ptr< translationData_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1969:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1992:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - BiosequenceRecord (::std::auto_ptr< sequence_type >); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:2105:45: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - GeneralNucleotideSequenceRecord (::std::auto_ptr< sequence_type >); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:2186:44: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - GeneralAminoacidSequenceRecord (::std::auto_ptr< sequence_type >); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:2267:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - NucleotideSequenceRecord (::std::auto_ptr< sequence_type >); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:2348:37: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - AminoacidSequenceRecord (::std::auto_ptr< sequence_type >); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:2611:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - note (::std::auto_ptr< note_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3051:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] pos (::std::auto_ptr< pos_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3109:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] len (::std::auto_ptr< len_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3287:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] min (::std::auto_ptr< min_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3366:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] max (::std::auto_ptr< max_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3442:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] strand (::std::auto_ptr< strand_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3500:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] minCertainty (::std::auto_ptr< minCertainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3567:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] maxCertainty (::std::auto_ptr< maxCertainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3877:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] pos (::std::auto_ptr< pos_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3935:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] bases (::std::auto_ptr< bases_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4110:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] localAlignmentPosition (::std::auto_ptr< localAlignmentPosition_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4186:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4262:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] sequenceReference (::std::auto_ptr< sequenceReference_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4338:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] sequenceName (::std::auto_ptr< sequenceName_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4414:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] species (::std::auto_ptr< species_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4490:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] genomeBuild (::std::auto_ptr< genomeBuild_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4566:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] chromosome (::std::auto_ptr< chromosome_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4644:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4720:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] variantAccession (::std::auto_ptr< variantAccession_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4796:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] variantNote (::std::auto_ptr< variantNote_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:5064:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] reversedDirection (::std::auto_ptr< reversedDirection_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:5589:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] name (::std::auto_ptr< name_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:22916:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - relationName (::std::auto_ptr< relationName_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:5798:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] className (::std::auto_ptr< className_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:5938:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] properties (::std::auto_ptr< properties_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: +In file included from BioXSD-1.1_xsd.cxx:41: BioXSD-1.1_xsd.hxx:6115:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] specificFeatureName (::std::auto_ptr< specificFeatureName_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:23505:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - canonicalVariant (::std::auto_ptr< canonicalVariant_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:6385:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + note (::std::auto_ptr< note_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3192,9 +3312,9 @@ template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:23645:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - missing (::std::auto_ptr< missing_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:6627:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + appliesToWholeSequence (::std::auto_ptr< appliesToWholeSequence_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3202,22 +3322,21 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6385:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - note (::std::auto_ptr< note_type > p); - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:6703:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + position (::std::auto_ptr< position_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:23787:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - position (::std::auto_ptr< position_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:6843:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + occurrenceName (::std::auto_ptr< occurrenceName_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3226,9 +3345,9 @@ template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:23961:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - alignmentOfReference (::std::auto_ptr< alignmentOfReference_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:6919:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + occurrenceNote (::std::auto_ptr< occurrenceNote_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3237,9 +3356,9 @@ template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24019:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - alignedSequence (::std::auto_ptr< alignedSequence_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:6995:32: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + featureTypeDetails (::std::auto_ptr< featureTypeDetails_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3247,9 +3366,43 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:22916:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + relationName (::std::auto_ptr< relationName_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24042:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - alignment (::std::auto_ptr< alignedSequence_type >); +BioXSD-1.1_xsd.hxx:7203:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + frame (::std::auto_ptr< frame_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:7279:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + phase (::std::auto_ptr< phase_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:7419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + alignment (::std::auto_ptr< alignment_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -3258,100 +3411,142 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6627:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - appliesToWholeSequence (::std::auto_ptr< appliesToWholeSequence_type > p); - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:23505:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + canonicalVariant (::std::auto_ptr< canonicalVariant_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6703:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - position (::std::auto_ptr< position_type > p); - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:7588:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + referenceSequence (::std::auto_ptr< referenceSequence_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6843:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - occurrenceName (::std::auto_ptr< occurrenceName_type > p); +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:23645:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + missing (::std::auto_ptr< missing_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:23787:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + position (::std::auto_ptr< position_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6919:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - occurrenceNote (::std::auto_ptr< occurrenceNote_type > p); +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:23961:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + alignmentOfReference (::std::auto_ptr< alignmentOfReference_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24019:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + alignedSequence (::std::auto_ptr< alignedSequence_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6995:32: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - featureTypeDetails (::std::auto_ptr< featureTypeDetails_type > p); - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24042:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + alignment (::std::auto_ptr< alignedSequence_type >); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:7742:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + FeatureRecord (::std::auto_ptr< referenceSequence_type >); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24200:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24276:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] sequenceReference (::std::auto_ptr< sequenceReference_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24352:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] sequenceName (::std::auto_ptr< sequenceName_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:7901:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + predicted (::std::auto_ptr< predicted_type > p); + ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24428:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] species (::std::auto_ptr< species_type > p); ^~~~~~~~ @@ -3362,53 +3557,145 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24504:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] genomeBuild (::std::auto_ptr< genomeBuild_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:7977:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + experimental (::std::auto_ptr< experimental_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24580:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] chromosome (::std::auto_ptr< chromosome_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24658:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24734:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] variantAccession (::std::auto_ptr< variantAccession_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24810:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + variantNote (::std::auto_ptr< variantNote_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24970:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + feature (::std::auto_ptr< feature_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:25046:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + condensedReferences (::std::auto_ptr< condensedReferences_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:25133:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + annotation (::std::auto_ptr< feature_type >); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:8130:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + method (::std::auto_ptr< method_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24810:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - variantNote (::std::auto_ptr< variantNote_type > p); +BioXSD-1.1_xsd.hxx:8217:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + MethodResult (::std::auto_ptr< method_type >); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:8357:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + methodIdRef (::std::auto_ptr< methodIdRef_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -3417,33 +3704,42 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7203:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - frame (::std::auto_ptr< frame_type > p); - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:8444:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + Result (::std::auto_ptr< methodIdRef_type >); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7279:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - phase (::std::auto_ptr< phase_type > p); - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:8602:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + method (::std::auto_ptr< method_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24970:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - feature (::std::auto_ptr< feature_type > p); +BioXSD-1.1_xsd.hxx:8678:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + methodIdRef (::std::auto_ptr< methodIdRef_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:8818:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + verdict (::std::auto_ptr< verdict_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -3453,9 +3749,9 @@ template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:25046:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - condensedReferences (::std::auto_ptr< condensedReferences_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:8973:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + dataReference (::std::auto_ptr< dataReference_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3463,22 +3759,43 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1507:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - sequence (::std::auto_ptr< sequence_type > p); - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9113:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + verdict (::std::auto_ptr< verdict_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9189:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + reliability (::std::auto_ptr< reliability_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9212:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ExperimentalEvidence (::std::auto_ptr< dataReference_type >); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1585:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - species (::std::auto_ptr< species_type > p); +BioXSD-1.1_xsd.hxx:25778:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + localId (::std::auto_ptr< localId_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -3489,9 +3806,9 @@ ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1665:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - reference (::std::auto_ptr< reference_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:25932:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + code (::std::auto_ptr< code_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -3499,22 +3816,22 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - alignment (::std::auto_ptr< alignment_type > p); +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:26122:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + aminoacid (::std::auto_ptr< aminoacid_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1741:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - name (::std::auto_ptr< name_type > p); +BioXSD-1.1_xsd.hxx:26253:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + note (::std::auto_ptr< note_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -3524,9 +3841,9 @@ template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:25133:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - annotation (::std::auto_ptr< feature_type >); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:9566:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + name (::std::auto_ptr< name_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3534,13 +3851,46 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1817:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9642:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + index (::std::auto_ptr< index_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9718:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + unit (::std::auto_ptr< unit_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9794:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] note (::std::auto_ptr< note_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:26781:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + method (::std::auto_ptr< method_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here @@ -3548,9 +3898,9 @@ ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1893:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - translationData (::std::auto_ptr< translationData_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:26857:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ontology (::std::auto_ptr< ontology_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -3560,9 +3910,9 @@ ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1969:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:26933:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + database (::std::auto_ptr< database_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -3572,9 +3922,9 @@ ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1992:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - BiosequenceRecord (::std::auto_ptr< sequence_type >); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27009:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + scoreType (::std::auto_ptr< scoreType_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -3582,23 +3932,44 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7588:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - referenceSequence (::std::auto_ptr< referenceSequence_type > p); - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9974:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + position (::std::auto_ptr< position_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10032:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + value (::std::auto_ptr< value_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10108:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:2105:45: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - GeneralNucleotideSequenceRecord (::std::auto_ptr< sequence_type >); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27164:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + localId (::std::auto_ptr< localId_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -3608,9 +3979,9 @@ ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:2186:44: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - GeneralAminoacidSequenceRecord (::std::auto_ptr< sequence_type >); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27316:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + localId (::std::auto_ptr< localId_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -3618,11 +3989,33 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10285:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + pos (::std::auto_ptr< pos_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10361:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + strand (::std::auto_ptr< strand_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:2267:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - NucleotideSequenceRecord (::std::auto_ptr< sequence_type >); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27468:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + localId (::std::auto_ptr< localId_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -3630,23 +4023,22 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7742:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - FeatureRecord (::std::auto_ptr< referenceSequence_type >); - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + certainty (::std::auto_ptr< certainty_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:2348:37: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - AminoacidSequenceRecord (::std::auto_ptr< sequence_type >); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27620:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + localId (::std::auto_ptr< localId_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -3654,35 +4046,56 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7901:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - predicted (::std::auto_ptr< predicted_type > p); +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10679:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + pos (::std::auto_ptr< pos_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10755:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + strand (::std::auto_ptr< strand_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10813:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + certainty (::std::auto_ptr< certainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7977:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - experimental (::std::auto_ptr< experimental_type > p); - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:27773:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + localId (::std::auto_ptr< localId_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:2611:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - note (::std::auto_ptr< note_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27925:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + feature (::std::auto_ptr< feature_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -3690,34 +4103,34 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8130:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - method (::std::auto_ptr< method_type > p); - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:28001:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + condensedReferences (::std::auto_ptr< condensedReferences_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8217:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - MethodResult (::std::auto_ptr< method_type >); - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:28088:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + annotation1 (::std::auto_ptr< feature_type >); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:25778:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - localId (::std::auto_ptr< localId_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:11072:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + pos (::std::auto_ptr< pos_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3726,21 +4139,20 @@ template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:25932:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - code (::std::auto_ptr< code_type > p); - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3051:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - pos (::std::auto_ptr< pos_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:11148:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + strand (::std::auto_ptr< strand_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11206:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + certainty (::std::auto_ptr< certainty_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3748,23 +4160,35 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8357:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:28471:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + method (::std::auto_ptr< method_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:28547:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] methodIdRef (::std::auto_ptr< methodIdRef_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3109:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - len (::std::auto_ptr< len_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28623:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ontology (::std::auto_ptr< ontology_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -3772,22 +4196,34 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8444:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - Result (::std::auto_ptr< methodIdRef_type >); - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:28699:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ontologyIdRef (::std::auto_ptr< ontologyIdRef_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:28775:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + database (::std::auto_ptr< database_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:26122:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - aminoacid (::std::auto_ptr< aminoacid_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:11465:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + min (::std::auto_ptr< min_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3796,9 +4232,20 @@ template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:26253:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - note (::std::auto_ptr< note_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:11544:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + max (::std::auto_ptr< max_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11620:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + strand (::std::auto_ptr< strand_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3808,9 +4255,9 @@ ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3287:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - min (::std::auto_ptr< min_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28851:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + databaseIdRef (::std::auto_ptr< databaseIdRef_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -3818,23 +4265,23 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8602:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - method (::std::auto_ptr< method_type > p); - ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:28927:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + scoreType (::std::auto_ptr< scoreType_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3366:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - max (::std::auto_ptr< max_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:29003:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -3842,23 +4289,33 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8678:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - methodIdRef (::std::auto_ptr< methodIdRef_type > p); - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11678:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + minCertainty (::std::auto_ptr< minCertainty_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11745:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + maxCertainty (::std::auto_ptr< maxCertainty_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3442:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - strand (::std::auto_ptr< strand_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:29244:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + localId (::std::auto_ptr< localId_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -3866,10 +4323,32 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12003:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + max (::std::auto_ptr< max_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12061:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + certainty (::std::auto_ptr< certainty_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3500:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - minCertainty (::std::auto_ptr< minCertainty_type > p); +BioXSD-1.1_xsd.hxx:29415:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + relationName (::std::auto_ptr< relationName_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -3880,9 +4359,9 @@ ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3567:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - maxCertainty (::std::auto_ptr< maxCertainty_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:29826:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + localIdRef (::std::auto_ptr< localIdRef_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -3890,22 +4369,21 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8818:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - verdict (::std::auto_ptr< verdict_type > p); - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12377:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + insertion (::std::auto_ptr< insertion_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:26781:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - method (::std::auto_ptr< method_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:12517:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + nextPoint (::std::auto_ptr< nextPoint_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3914,9 +4392,9 @@ template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:26857:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ontology (::std::auto_ptr< ontology_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:12593:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + nextPartition (::std::auto_ptr< nextPartition_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3925,9 +4403,9 @@ template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:26933:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - database (::std::auto_ptr< database_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:12669:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + samePoint (::std::auto_ptr< samePoint_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3935,15 +4413,21 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8973:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - dataReference (::std::auto_ptr< dataReference_type > p); +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12745:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + samePartition (::std::auto_ptr< samePartition_type > p); ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27009:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - scoreType (::std::auto_ptr< scoreType_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:12821:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + outside (::std::auto_ptr< outside_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -3951,18 +4435,32 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:13071:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + correspondance (::std::auto_ptr< correspondance_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3877:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - pos (::std::auto_ptr< pos_type > p); - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:13211:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + insertion (::std::auto_ptr< insertion_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_output_xsd.cxx:41: +freecontact_output_xsd.hxx:681:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::BioXSD::FeatureRecord > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -3970,23 +4468,21 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9113:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - verdict (::std::auto_ptr< verdict_type > p); - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:13351:39: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + explicitSequenceReference (::std::auto_ptr< explicitSequenceReference_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:3935:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - bases (::std::auto_ptr< bases_type > p); - ^~~~~~~~ +In file included from freecontact_output_xsd.cxx:41: +freecontact_output_xsd.hxx:697:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::BioXSD::FeatureRecord > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -3994,35 +4490,32 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9189:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - reliability (::std::auto_ptr< reliability_type > p); - ^~~~~~~~ +In file included from freecontact_output_xsd.cxx:41: +freecontact_output_xsd.hxx:715:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::BioXSD::FeatureRecord > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9212:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ExperimentalEvidence (::std::auto_ptr< dataReference_type >); - ^~~~~~~~ +In file included from freecontact_output_xsd.cxx:41: +freecontact_output_xsd.hxx:731:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::BioXSD::FeatureRecord > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4110:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - localAlignmentPosition (::std::auto_ptr< localAlignmentPosition_type > p); - ^~~~~~~~ +In file included from freecontact_output_xsd.cxx:41: +freecontact_output_xsd.hxx:747:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::BioXSD::FeatureRecord > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -4030,11 +4523,21 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, +In file included from freecontact_output_xsd.cxx:41: +freecontact_output_xsd.hxx:765:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::BioXSD::FeatureRecord > + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4186:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; ^~~~~~~~ +In file included from freecontact_output_xsd.cxx:41: +freecontact_output_xsd.hxx:785:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::BioXSD::FeatureRecord > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -4042,11 +4545,10 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4262:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - sequenceReference (::std::auto_ptr< sequenceReference_type > p); - ^~~~~~~~ +In file included from freecontact_output_xsd.cxx:41: +freecontact_output_xsd.hxx:807:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::BioXSD::FeatureRecord > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -4055,9 +4557,9 @@ template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27164:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - localId (::std::auto_ptr< localId_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:13597:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + reference (::std::auto_ptr< reference_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -4065,11 +4567,21 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, +In file included from freecontact_output_xsd.cxx:41: +freecontact_output_xsd.hxx:830:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::BioXSD::FeatureRecord > + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4338:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - sequenceName (::std::auto_ptr< sequenceName_type > p); - ^~~~~~~~ +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_output_xsd.cxx:41: +freecontact_output_xsd.hxx:847:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::BioXSD::FeatureRecord > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -4077,11 +4589,21 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, +In file included from freecontact_output_xsd.cxx:41: +freecontact_output_xsd.hxx:863:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::BioXSD::FeatureRecord > + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4414:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - species (::std::auto_ptr< species_type > p); - ^~~~~~~~ +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_output_xsd.cxx:41: +freecontact_output_xsd.hxx:881:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::BioXSD::FeatureRecord > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -4089,11 +4611,21 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, +In file included from freecontact_output_xsd.cxx:41: +freecontact_output_xsd.hxx:895:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::BioXSD::FeatureRecord > + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4490:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - genomeBuild (::std::auto_ptr< genomeBuild_type > p); - ^~~~~~~~ +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_output_xsd.cxx:41: +freecontact_output_xsd.hxx:912:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::BioXSD::FeatureRecord > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -4102,9 +4634,9 @@ template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27316:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - localId (::std::auto_ptr< localId_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:13832:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + geneticCode (::std::auto_ptr< geneticCode_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -4112,46 +4644,43 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4566:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - chromosome (::std::auto_ptr< chromosome_type > p); - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:13908:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + phase (::std::auto_ptr< phase_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4644:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:13984:42: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + reversedTranslationDirection (::std::auto_ptr< reversedTranslationDirection_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4720:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - variantAccession (::std::auto_ptr< variantAccession_type > p); - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:14226:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + dbName (::std::auto_ptr< dbName_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27468:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - localId (::std::auto_ptr< localId_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:14304:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + dbUri (::std::auto_ptr< dbUri_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -4159,22 +4688,43 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:4796:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - variantNote (::std::auto_ptr< variantNote_type > p); +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:14380:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + dbVersion (::std::auto_ptr< dbVersion_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:14511:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + wsdl (::std::auto_ptr< wsdl_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:14587:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + wsdlService (::std::auto_ptr< wsdlService_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27620:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - localId (::std::auto_ptr< localId_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:14663:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + wsdlPort (::std::auto_ptr< wsdlPort_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -4183,9 +4733,108 @@ template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27773:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - localId (::std::auto_ptr< localId_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:14739:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:14815:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:14894:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + webserviceDate (::std::auto_ptr< webserviceDate_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:15075:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + accession (::std::auto_ptr< accession_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:15151:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + entryUri (::std::auto_ptr< entryUri_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:15227:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + entryVersion (::std::auto_ptr< entryVersion_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:15305:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + date (::std::auto_ptr< date_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:15481:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ontologyName (::std::auto_ptr< ontologyName_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:15559:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ontologyUri (::std::auto_ptr< ontologyUri_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:15635:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ontologyVersion (::std::auto_ptr< ontologyVersion_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -4195,9 +4844,9 @@ ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9566:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - name (::std::auto_ptr< name_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1507:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + sequence (::std::auto_ptr< sequence_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -4207,9 +4856,9 @@ ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9642:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - index (::std::auto_ptr< index_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1585:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + species (::std::auto_ptr< species_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -4219,9 +4868,9 @@ ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9718:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - unit (::std::auto_ptr< unit_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1665:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + reference (::std::auto_ptr< reference_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -4230,9 +4879,31 @@ template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27925:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - feature (::std::auto_ptr< feature_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:15870:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + accession (::std::auto_ptr< accession_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:15946:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + conceptUri (::std::auto_ptr< conceptUri_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16028:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + term (::std::auto_ptr< term_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -4242,7 +4913,19 @@ ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9794:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.hxx:1741:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + name (::std::auto_ptr< name_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1817:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] note (::std::auto_ptr< note_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -4252,34 +4935,35 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28001:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - condensedReferences (::std::auto_ptr< condensedReferences_type > p); - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1893:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + translationData (::std::auto_ptr< translationData_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:5064:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - reversedDirection (::std::auto_ptr< reversedDirection_type > p); +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1969:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9974:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - position (::std::auto_ptr< position_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1992:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + BiosequenceRecord (::std::auto_ptr< sequence_type >); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -4288,8 +4972,8 @@ template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28088:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - annotation1 (::std::auto_ptr< feature_type >); +BioXSD-1.1_xsd.hxx:16207:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + speciesName (::std::auto_ptr< speciesName_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -4298,22 +4982,87 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10032:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - value (::std::auto_ptr< value_type > p); - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16283:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + speciesNote (::std::auto_ptr< speciesNote_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16459:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16538:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + supersequence (::std::auto_ptr< supersequence_type > p); + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10108:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); +BioXSD-1.1_xsd.hxx:2105:45: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + GeneralNucleotideSequenceRecord (::std::auto_ptr< sequence_type >); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16617:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + supersequenceName (::std::auto_ptr< supersequenceName_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16693:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + sequenceVersion (::std::auto_ptr< sequenceVersion_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16769:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + variantAccession (::std::auto_ptr< variantAccession_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16845:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + variantNote (::std::auto_ptr< variantNote_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -4324,9 +5073,9 @@ ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10285:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - pos (::std::auto_ptr< pos_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:2186:44: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + GeneralAminoacidSequenceRecord (::std::auto_ptr< sequence_type >); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -4336,9 +5085,9 @@ ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10361:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - strand (::std::auto_ptr< strand_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:2267:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + NucleotideSequenceRecord (::std::auto_ptr< sequence_type >); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -4348,9 +5097,9 @@ ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - certainty (::std::auto_ptr< certainty_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:2348:37: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + AminoacidSequenceRecord (::std::auto_ptr< sequence_type >); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -4359,9 +5108,9 @@ template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28471:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - method (::std::auto_ptr< method_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:17130:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + name (::std::auto_ptr< name_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -4370,9 +5119,14 @@ template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28547:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - methodIdRef (::std::auto_ptr< methodIdRef_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:17206:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + uri (::std::auto_ptr< uri_type > p); + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:2611:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + note (::std::auto_ptr< note_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -4380,11 +5134,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10679:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - pos (::std::auto_ptr< pos_type > p); - ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -4393,9 +5142,9 @@ template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28623:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ontology (::std::auto_ptr< ontology_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:17282:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + version (::std::auto_ptr< version_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -4403,22 +5152,21 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10755:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - strand (::std::auto_ptr< strand_type > p); - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17358:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + date (::std::auto_ptr< date_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28699:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ontologyIdRef (::std::auto_ptr< ontologyIdRef_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:17434:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + wsdl (::std::auto_ptr< wsdl_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -4426,21 +5174,20 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10813:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - certainty (::std::auto_ptr< certainty_type > p); - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17510:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + wsdlService (::std::auto_ptr< wsdlService_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28775:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - database (::std::auto_ptr< database_type > p); +BioXSD-1.1_xsd.hxx:17586:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + wsdlPort (::std::auto_ptr< wsdlPort_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -4450,9 +5197,9 @@ template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28851:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - databaseIdRef (::std::auto_ptr< databaseIdRef_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:17662:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -4461,9 +5208,9 @@ template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28927:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - scoreType (::std::auto_ptr< scoreType_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:17738:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -4472,8 +5219,8 @@ template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:29003:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); +BioXSD-1.1_xsd.hxx:17817:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + webserviceDate (::std::auto_ptr< webserviceDate_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -4484,7 +5231,7 @@ ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11072:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.hxx:3051:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] pos (::std::auto_ptr< pos_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -4496,9 +5243,9 @@ ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11148:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - strand (::std::auto_ptr< strand_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:3109:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + len (::std::auto_ptr< len_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -4508,9 +5255,9 @@ ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11206:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - certainty (::std::auto_ptr< certainty_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:3287:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + min (::std::auto_ptr< min_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -4518,45 +5265,47 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:5589:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - name (::std::auto_ptr< name_type > p); - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3366:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + max (::std::auto_ptr< max_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:29244:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - localId (::std::auto_ptr< localId_type > p); - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3442:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + strand (::std::auto_ptr< strand_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:29415:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - relationName (::std::auto_ptr< relationName_type > p); +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:3500:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + minCertainty (::std::auto_ptr< minCertainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11465:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - min (::std::auto_ptr< min_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:3567:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + maxCertainty (::std::auto_ptr< maxCertainty_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -4566,8 +5315,8 @@ ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11544:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - max (::std::auto_ptr< max_type > p); +BioXSD-1.1_xsd.hxx:3877:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + pos (::std::auto_ptr< pos_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -4578,9 +5327,9 @@ ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11620:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - strand (::std::auto_ptr< strand_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:3935:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + bases (::std::auto_ptr< bases_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -4590,9 +5339,9 @@ ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11678:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - minCertainty (::std::auto_ptr< minCertainty_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4110:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + localAlignmentPosition (::std::auto_ptr< localAlignmentPosition_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -4600,23 +5349,23 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:5798:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - className (::std::auto_ptr< className_type > p); - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:4186:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11745:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - maxCertainty (::std::auto_ptr< maxCertainty_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4262:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + sequenceReference (::std::auto_ptr< sequenceReference_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -4624,34 +5373,35 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:5938:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - properties (::std::auto_ptr< properties_type > p); - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:4338:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + sequenceName (::std::auto_ptr< sequenceName_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from BioXSD-1.1_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:29826:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - localIdRef (::std::auto_ptr< localIdRef_type > p); - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:4414:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + species (::std::auto_ptr< species_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12003:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - max (::std::auto_ptr< max_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4490:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + genomeBuild (::std::auto_ptr< genomeBuild_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -4661,9 +5411,9 @@ ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12061:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - certainty (::std::auto_ptr< certainty_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4566:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + chromosome (::std::auto_ptr< chromosome_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -4671,35 +5421,35 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6115:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - specificFeatureName (::std::auto_ptr< specificFeatureName_type > p); +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:4644:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6385:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - note (::std::auto_ptr< note_type > p); - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:4720:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + variantAccession (::std::auto_ptr< variantAccession_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12377:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - insertion (::std::auto_ptr< insertion_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4796:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + variantNote (::std::auto_ptr< variantNote_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -4707,34 +5457,34 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6627:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - appliesToWholeSequence (::std::auto_ptr< appliesToWholeSequence_type > p); - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:5064:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + reversedDirection (::std::auto_ptr< reversedDirection_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6703:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - position (::std::auto_ptr< position_type > p); - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:5589:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + name (::std::auto_ptr< name_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12517:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - nextPoint (::std::auto_ptr< nextPoint_type > p); +BioXSD-1.1_xsd.hxx:5798:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + className (::std::auto_ptr< className_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -4743,35 +5493,35 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6843:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - occurrenceName (::std::auto_ptr< occurrenceName_type > p); - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:5938:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + properties (::std::auto_ptr< properties_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6919:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - occurrenceNote (::std::auto_ptr< occurrenceNote_type > p); - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:6115:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + specificFeatureName (::std::auto_ptr< specificFeatureName_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12593:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - nextPartition (::std::auto_ptr< nextPartition_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:6385:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + note (::std::auto_ptr< note_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -4779,23 +5529,23 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:6995:32: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - featureTypeDetails (::std::auto_ptr< featureTypeDetails_type > p); - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:6627:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + appliesToWholeSequence (::std::auto_ptr< appliesToWholeSequence_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12669:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - samePoint (::std::auto_ptr< samePoint_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:6703:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + position (::std::auto_ptr< position_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -4805,9 +5555,9 @@ ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12745:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - samePartition (::std::auto_ptr< samePartition_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:6843:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + occurrenceName (::std::auto_ptr< occurrenceName_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -4817,9 +5567,9 @@ ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12821:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - outside (::std::auto_ptr< outside_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:6919:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + occurrenceNote (::std::auto_ptr< occurrenceNote_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -4827,35 +5577,35 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7203:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - frame (::std::auto_ptr< frame_type > p); - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:6995:32: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + featureTypeDetails (::std::auto_ptr< featureTypeDetails_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7279:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - phase (::std::auto_ptr< phase_type > p); +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:7203:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + frame (::std::auto_ptr< frame_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13071:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - correspondance (::std::auto_ptr< correspondance_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:7279:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + phase (::std::auto_ptr< phase_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -4863,22 +5613,10 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:7419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - alignment (::std::auto_ptr< alignment_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13211:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - insertion (::std::auto_ptr< insertion_type > p); +BioXSD-1.1_xsd.hxx:7419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + alignment (::std::auto_ptr< alignment_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -4887,140 +5625,118 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:7588:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] referenceSequence (::std::auto_ptr< referenceSequence_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:7742:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] FeatureRecord (::std::auto_ptr< referenceSequence_type >); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13351:39: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - explicitSequenceReference (::std::auto_ptr< explicitSequenceReference_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:7901:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] predicted (::std::auto_ptr< predicted_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:7977:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] experimental (::std::auto_ptr< experimental_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8130:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] method (::std::auto_ptr< method_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8217:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] MethodResult (::std::auto_ptr< method_type >); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13597:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - reference (::std::auto_ptr< reference_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8357:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] methodIdRef (::std::auto_ptr< methodIdRef_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8444:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] Result (::std::auto_ptr< methodIdRef_type >); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:110:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - sequence (::std::auto_ptr< sequence_type > x) +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:8602:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + method (::std::auto_ptr< method_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13832:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - geneticCode (::std::auto_ptr< geneticCode_type > p); +BioXSD-1.1_xsd.hxx:8678:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + methodIdRef (::std::auto_ptr< methodIdRef_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -5031,9 +5747,9 @@ ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13908:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - phase (::std::auto_ptr< phase_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:8818:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + verdict (::std::auto_ptr< verdict_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -5041,26 +5757,11 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8602:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - method (::std::auto_ptr< method_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13984:42: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - reversedTranslationDirection (::std::auto_ptr< reversedTranslationDirection_type > p); - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:140:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - species (::std::auto_ptr< species_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:8973:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + dataReference (::std::auto_ptr< dataReference_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -5068,40 +5769,46 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9113:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + verdict (::std::auto_ptr< verdict_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8678:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - methodIdRef (::std::auto_ptr< methodIdRef_type > p); +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9189:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + reliability (::std::auto_ptr< reliability_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8818:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - verdict (::std::auto_ptr< verdict_type > p); - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9212:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ExperimentalEvidence (::std::auto_ptr< dataReference_type >); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:170:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - reference (::std::auto_ptr< reference_type > x) - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:22916:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + relationName (::std::auto_ptr< relationName_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -5111,9 +5818,9 @@ ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14226:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - dbName (::std::auto_ptr< dbName_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:9566:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + name (::std::auto_ptr< name_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -5123,8 +5830,8 @@ ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14304:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - dbUri (::std::auto_ptr< dbUri_type > p); +BioXSD-1.1_xsd.hxx:9642:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + index (::std::auto_ptr< index_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -5135,9 +5842,9 @@ ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14380:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - dbVersion (::std::auto_ptr< dbVersion_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:9718:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + unit (::std::auto_ptr< unit_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -5145,21 +5852,23 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:200:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - name (::std::auto_ptr< name_type > x) - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:9794:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + note (::std::auto_ptr< note_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14511:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - wsdl (::std::auto_ptr< wsdl_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:9974:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + position (::std::auto_ptr< position_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -5167,23 +5876,23 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:8973:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - dataReference (::std::auto_ptr< dataReference_type > p); - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10032:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + value (::std::auto_ptr< value_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14587:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - wsdlService (::std::auto_ptr< wsdlService_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:10108:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -5191,23 +5900,22 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9113:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - verdict (::std::auto_ptr< verdict_type > p); - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:23505:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + canonicalVariant (::std::auto_ptr< canonicalVariant_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14663:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - wsdlPort (::std::auto_ptr< wsdlPort_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:10285:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + pos (::std::auto_ptr< pos_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -5215,35 +5923,35 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9189:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - reliability (::std::auto_ptr< reliability_type > p); - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10361:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + strand (::std::auto_ptr< strand_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14739:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9212:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ExperimentalEvidence (::std::auto_ptr< dataReference_type >); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:10419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + certainty (::std::auto_ptr< certainty_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10679:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + pos (::std::auto_ptr< pos_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -5253,9 +5961,9 @@ ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14815:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:10755:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + strand (::std::auto_ptr< strand_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -5263,21 +5971,35 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:230:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - note (::std::auto_ptr< note_type > x) - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:10813:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + certainty (::std::auto_ptr< certainty_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14894:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - webserviceDate (::std::auto_ptr< webserviceDate_type > p); +BioXSD-1.1_xsd.hxx:11072:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + pos (::std::auto_ptr< pos_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11148:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + strand (::std::auto_ptr< strand_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -5285,9 +6007,22 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:260:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - translationData (::std::auto_ptr< translationData_type > x) - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11206:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + certainty (::std::auto_ptr< certainty_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:23645:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + missing (::std::auto_ptr< missing_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -5295,9 +6030,10 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:290:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > x) - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:23787:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + position (::std::auto_ptr< position_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -5307,9 +6043,9 @@ ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15075:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - accession (::std::auto_ptr< accession_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:11465:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + min (::std::auto_ptr< min_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -5319,9 +6055,9 @@ ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15151:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - entryUri (::std::auto_ptr< entryUri_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:11544:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + max (::std::auto_ptr< max_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -5329,28 +6065,23 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9566:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - name (::std::auto_ptr< name_type > p); - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:11620:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + strand (::std::auto_ptr< strand_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15227:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - entryVersion (::std::auto_ptr< entryVersion_type > p); +BioXSD-1.1_xsd.hxx:11678:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + minCertainty (::std::auto_ptr< minCertainty_type > p); ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9642:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - index (::std::auto_ptr< index_type > p); - ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -5358,30 +6089,11 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9718:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - unit (::std::auto_ptr< unit_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15305:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - date (::std::auto_ptr< date_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:11745:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + maxCertainty (::std::auto_ptr< maxCertainty_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -5389,21 +6101,21 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9794:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - note (::std::auto_ptr< note_type > p); - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:23961:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + alignmentOfReference (::std::auto_ptr< alignmentOfReference_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:376:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - note (::std::auto_ptr< note_type > x) - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24019:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + alignedSequence (::std::auto_ptr< alignedSequence_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -5411,23 +6123,22 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15481:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ontologyName (::std::auto_ptr< ontologyName_type > p); - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24042:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + alignment (::std::auto_ptr< alignedSequence_type >); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15559:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ontologyUri (::std::auto_ptr< ontologyUri_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:12003:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + max (::std::auto_ptr< max_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -5437,9 +6148,9 @@ ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15635:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ontologyVersion (::std::auto_ptr< ontologyVersion_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:12061:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + certainty (::std::auto_ptr< certainty_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -5447,9 +6158,10 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:420:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - pos (::std::auto_ptr< pos_type > x) - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24200:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -5457,49 +6169,43 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:9974:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - position (::std::auto_ptr< position_type > p); - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24276:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + sequenceReference (::std::auto_ptr< sequenceReference_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10032:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - value (::std::auto_ptr< value_type > p); - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24352:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + sequenceName (::std::auto_ptr< sequenceName_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10108:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24428:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + species (::std::auto_ptr< species_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:444:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - len (::std::auto_ptr< len_type > x) - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15870:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - accession (::std::auto_ptr< accession_type > p); +BioXSD-1.1_xsd.hxx:12377:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + insertion (::std::auto_ptr< insertion_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -5508,18 +6214,23 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12517:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + nextPoint (::std::auto_ptr< nextPoint_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15946:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - conceptUri (::std::auto_ptr< conceptUri_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:12593:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + nextPartition (::std::auto_ptr< nextPartition_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -5527,23 +6238,23 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10285:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - pos (::std::auto_ptr< pos_type > p); - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12669:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + samePoint (::std::auto_ptr< samePoint_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16028:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - term (::std::auto_ptr< term_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:12745:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + samePartition (::std::auto_ptr< samePartition_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -5551,33 +6262,33 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10361:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - strand (::std::auto_ptr< strand_type > p); - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:12821:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + outside (::std::auto_ptr< outside_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - certainty (::std::auto_ptr< certainty_type > p); - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24504:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + genomeBuild (::std::auto_ptr< genomeBuild_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:478:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - min (::std::auto_ptr< min_type > x) - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24580:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + chromosome (::std::auto_ptr< chromosome_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -5585,45 +6296,43 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16207:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - speciesName (::std::auto_ptr< speciesName_type > p); - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24658:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16283:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - speciesNote (::std::auto_ptr< speciesNote_type > p); - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24734:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + variantAccession (::std::auto_ptr< variantAccession_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10679:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - pos (::std::auto_ptr< pos_type > p); - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24810:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + variantNote (::std::auto_ptr< variantNote_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:508:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - max (::std::auto_ptr< max_type > x) - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:24970:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + feature (::std::auto_ptr< feature_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -5631,23 +6340,22 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10755:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - strand (::std::auto_ptr< strand_type > p); - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:25046:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + condensedReferences (::std::auto_ptr< condensedReferences_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16459:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:13071:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + correspondance (::std::auto_ptr< correspondance_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -5655,23 +6363,34 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:10813:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - certainty (::std::auto_ptr< certainty_type > p); +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:25133:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + annotation (::std::auto_ptr< feature_type >); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:13211:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + insertion (::std::auto_ptr< insertion_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16538:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - supersequence (::std::auto_ptr< supersequence_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:13351:39: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + explicitSequenceReference (::std::auto_ptr< explicitSequenceReference_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -5681,9 +6400,9 @@ ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16617:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - supersequenceName (::std::auto_ptr< supersequenceName_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:13597:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + reference (::std::auto_ptr< reference_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -5693,9 +6412,9 @@ ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16693:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - sequenceVersion (::std::auto_ptr< sequenceVersion_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:13832:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + geneticCode (::std::auto_ptr< geneticCode_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -5705,9 +6424,9 @@ ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16769:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - variantAccession (::std::auto_ptr< variantAccession_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:13908:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + phase (::std::auto_ptr< phase_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -5715,21 +6434,23 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:538:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - strand (::std::auto_ptr< strand_type > x) - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:13984:42: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + reversedTranslationDirection (::std::auto_ptr< reversedTranslationDirection_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16845:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - variantNote (::std::auto_ptr< variantNote_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:14226:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + dbName (::std::auto_ptr< dbName_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -5737,33 +6458,34 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11072:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - pos (::std::auto_ptr< pos_type > p); - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:14304:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + dbUri (::std::auto_ptr< dbUri_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11148:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - strand (::std::auto_ptr< strand_type > p); - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:14380:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + dbVersion (::std::auto_ptr< dbVersion_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:562:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - minCertainty (::std::auto_ptr< minCertainty_type > x) - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:25778:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + localId (::std::auto_ptr< localId_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -5771,25 +6493,36 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11206:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - certainty (::std::auto_ptr< certainty_type > p); - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:14511:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + wsdl (::std::auto_ptr< wsdl_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17130:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - name (::std::auto_ptr< name_type > p); +BioXSD-1.1_xsd.hxx:14587:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + wsdlService (::std::auto_ptr< wsdlService_type > p); + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:25932:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + code (::std::auto_ptr< code_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here @@ -5797,9 +6530,9 @@ ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17206:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - uri (::std::auto_ptr< uri_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:14663:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + wsdlPort (::std::auto_ptr< wsdlPort_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -5807,9 +6540,10 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:592:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - maxCertainty (::std::auto_ptr< maxCertainty_type > x) - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:26122:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + aminoacid (::std::auto_ptr< aminoacid_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -5819,9 +6553,9 @@ ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17282:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - version (::std::auto_ptr< version_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:14739:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -5831,9 +6565,9 @@ ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17358:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - date (::std::auto_ptr< date_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:14815:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -5841,9 +6575,10 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:634:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - pos (::std::auto_ptr< pos_type > x) - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:26253:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + note (::std::auto_ptr< note_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -5853,9 +6588,9 @@ ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17434:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - wsdl (::std::auto_ptr< wsdl_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:14894:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + webserviceDate (::std::auto_ptr< webserviceDate_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -5863,23 +6598,35 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11465:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - min (::std::auto_ptr< min_type > p); - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17510:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - wsdlService (::std::auto_ptr< wsdlService_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:15075:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + accession (::std::auto_ptr< accession_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:15151:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + entryUri (::std::auto_ptr< entryUri_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:15227:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + entryVersion (::std::auto_ptr< entryVersion_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -5887,23 +6634,23 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11544:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - max (::std::auto_ptr< max_type > p); - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17586:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - wsdlPort (::std::auto_ptr< wsdlPort_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:15305:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + date (::std::auto_ptr< date_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:15481:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ontologyName (::std::auto_ptr< ontologyName_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -5911,23 +6658,23 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11620:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - strand (::std::auto_ptr< strand_type > p); - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:15559:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ontologyUri (::std::auto_ptr< ontologyUri_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17662:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:15635:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ontologyVersion (::std::auto_ptr< ontologyVersion_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -5935,21 +6682,43 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11678:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - minCertainty (::std::auto_ptr< minCertainty_type > p); - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:26781:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + method (::std::auto_ptr< method_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:658:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - bases (::std::auto_ptr< bases_type > x) - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:26857:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ontology (::std::auto_ptr< ontology_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:26933:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + database (::std::auto_ptr< database_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:27009:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + scoreType (::std::auto_ptr< scoreType_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -5959,9 +6728,9 @@ ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17738:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:15870:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + accession (::std::auto_ptr< accession_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -5969,23 +6738,23 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:11745:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - maxCertainty (::std::auto_ptr< maxCertainty_type > p); - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:15946:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + conceptUri (::std::auto_ptr< conceptUri_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17817:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - webserviceDate (::std::auto_ptr< webserviceDate_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:16028:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + term (::std::auto_ptr< term_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -5993,14 +6762,10 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:692:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - localAlignmentPosition (::std::auto_ptr< localAlignmentPosition_type > x) - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12003:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - max (::std::auto_ptr< max_type > p); - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:27164:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + localId (::std::auto_ptr< localId_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6008,60 +6773,70 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16207:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + speciesName (::std::auto_ptr< speciesName_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12061:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - certainty (::std::auto_ptr< certainty_type > p); - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16283:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + speciesNote (::std::auto_ptr< speciesNote_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:722:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - sequenceRecord (::std::auto_ptr< sequenceRecord_type > x) - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16459:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:752:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - sequenceReference (::std::auto_ptr< sequenceReference_type > x) - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16538:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + supersequence (::std::auto_ptr< supersequence_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12377:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - insertion (::std::auto_ptr< insertion_type > p); - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16617:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + supersequenceName (::std::auto_ptr< supersequenceName_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:782:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - sequenceName (::std::auto_ptr< sequenceName_type > x) - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:27316:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + localId (::std::auto_ptr< localId_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6069,9 +6844,10 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:812:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - species (::std::auto_ptr< species_type > x) - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:27468:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + localId (::std::auto_ptr< localId_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6079,21 +6855,10 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12517:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - nextPoint (::std::auto_ptr< nextPoint_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:842:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - genomeBuild (::std::auto_ptr< genomeBuild_type > x) - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:27620:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + localId (::std::auto_ptr< localId_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6101,57 +6866,57 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12593:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - nextPartition (::std::auto_ptr< nextPartition_type > p); - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16693:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + sequenceVersion (::std::auto_ptr< sequenceVersion_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12669:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - samePoint (::std::auto_ptr< samePoint_type > p); - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16769:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + variantAccession (::std::auto_ptr< variantAccession_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12745:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - samePartition (::std::auto_ptr< samePartition_type > p); - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:16845:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + variantNote (::std::auto_ptr< variantNote_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:12821:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - outside (::std::auto_ptr< outside_type > p); +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:27773:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + localId (::std::auto_ptr< localId_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:872:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - chromosome (::std::auto_ptr< chromosome_type > x) - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:27925:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + feature (::std::auto_ptr< feature_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6159,9 +6924,10 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:902:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - subsequencePosition (::std::auto_ptr< subsequencePosition_type > x) - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:28001:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + condensedReferences (::std::auto_ptr< condensedReferences_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6169,63 +6935,70 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:932:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - variantAccession (::std::auto_ptr< variantAccession_type > x) - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17130:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + name (::std::auto_ptr< name_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:962:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - variantNote (::std::auto_ptr< variantNote_type > x) - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13071:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - correspondance (::std::auto_ptr< correspondance_type > p); - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17206:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + uri (::std::auto_ptr< uri_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17282:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + version (::std::auto_ptr< version_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13211:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - insertion (::std::auto_ptr< insertion_type > p); - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17358:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + date (::std::auto_ptr< date_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1046:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - reversedDirection (::std::auto_ptr< reversedDirection_type > x) - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17434:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + wsdl (::std::auto_ptr< wsdl_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1114:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - name (::std::auto_ptr< name_type > x) - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:28088:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + annotation1 (::std::auto_ptr< feature_type >); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6233,61 +7006,80 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1180:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - className (::std::auto_ptr< className_type > x) - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17510:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + wsdlService (::std::auto_ptr< wsdlService_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1228:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - properties (::std::auto_ptr< properties_type > x) +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17586:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + wsdlPort (::std::auto_ptr< wsdlPort_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13351:39: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - explicitSequenceReference (::std::auto_ptr< explicitSequenceReference_type > p); - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17662:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1262:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - specificFeatureName (::std::auto_ptr< specificFeatureName_type > x) +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17738:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1346:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - note (::std::auto_ptr< note_type > x) - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:17817:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + webserviceDate (::std::auto_ptr< webserviceDate_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1398:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - appliesToWholeSequence (::std::auto_ptr< appliesToWholeSequence_type > x) - ^~~~~~~~ +freecontact_output_xsd.cxx:68:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::BioXSD::FeatureRecord > + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:28471:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + method (::std::auto_ptr< method_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6295,21 +7087,21 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13597:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - reference (::std::auto_ptr< reference_type > p); - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:28547:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + methodIdRef (::std::auto_ptr< methodIdRef_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1428:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - position (::std::auto_ptr< position_type > x) - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:28623:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ontology (::std::auto_ptr< ontology_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6317,9 +7109,10 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1476:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - occurrenceName (::std::auto_ptr< occurrenceName_type > x) - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:28699:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ontologyIdRef (::std::auto_ptr< ontologyIdRef_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6327,33 +7120,32 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13832:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - geneticCode (::std::auto_ptr< geneticCode_type > p); - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:28775:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + database (::std::auto_ptr< database_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13908:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - phase (::std::auto_ptr< phase_type > p); - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:28851:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + databaseIdRef (::std::auto_ptr< databaseIdRef_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1506:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - occurrenceNote (::std::auto_ptr< occurrenceNote_type > x) - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:28927:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + scoreType (::std::auto_ptr< scoreType_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6361,21 +7153,21 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:13984:42: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - reversedTranslationDirection (::std::auto_ptr< reversedTranslationDirection_type > p); - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:29003:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1536:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - featureTypeDetails (::std::auto_ptr< featureTypeDetails_type > x) - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:29244:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + localId (::std::auto_ptr< localId_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6383,11 +7175,10 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14226:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - dbName (::std::auto_ptr< dbName_type > p); - ^~~~~~~~ +freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(const string&, xml_schema::flags, const properties&)': +freecontact_output_xsd.cxx:85:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6395,11 +7186,10 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14304:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - dbUri (::std::auto_ptr< dbUri_type > p); - ^~~~~~~~ +freecontact_output_xsd.cxx: At global scope: +freecontact_output_xsd.cxx:90:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::BioXSD::FeatureRecord > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6407,14 +7197,10 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1602:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - frame (::std::auto_ptr< frame_type > x) - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14380:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - dbVersion (::std::auto_ptr< dbVersion_type > p); - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:29415:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + relationName (::std::auto_ptr< relationName_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6422,6 +7208,10 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(const string&, xml_schema::error_handler&, xml_schema::flags, const properties&)': +freecontact_output_xsd.cxx:107:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6429,11 +7219,10 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14511:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - wsdl (::std::auto_ptr< wsdl_type > p); - ^~~~~~~~ +freecontact_output_xsd.cxx: At global scope: +freecontact_output_xsd.cxx:112:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::BioXSD::FeatureRecord > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6441,23 +7230,21 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14587:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - wsdlService (::std::auto_ptr< wsdlService_type > p); - ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:29826:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + localIdRef (::std::auto_ptr< localIdRef_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14663:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - wsdlPort (::std::auto_ptr< wsdlPort_type > p); - ^~~~~~~~ +freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(const string&, xercesc_3_2::DOMErrorHandler&, xml_schema::flags, const properties&)': +freecontact_output_xsd.cxx:125:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6465,11 +7252,10 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14739:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); - ^~~~~~~~ +freecontact_output_xsd.cxx: At global scope: +freecontact_output_xsd.cxx:130:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::BioXSD::FeatureRecord > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6477,11 +7263,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14815:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); - ^~~~~~~~ +freecontact_output_xsd.cxx:143:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::BioXSD::FeatureRecord > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6489,21 +7273,29 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1632:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - phase (::std::auto_ptr< phase_type > x) - ^~~~~~~~ +freecontact_output_xsd.cxx:157:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::BioXSD::FeatureRecord > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, +freecontact_output_xsd.cxx:167:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::BioXSD::FeatureRecord > + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:14894:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - webserviceDate (::std::auto_ptr< webserviceDate_type > p); +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; ^~~~~~~~ +freecontact_output_xsd.cxx:181:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::BioXSD::FeatureRecord > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6511,31 +7303,30 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1680:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - alignment (::std::auto_ptr< alignment_type > x) - ^~~~~~~~ +freecontact_output_xsd.cxx:196:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::BioXSD::FeatureRecord > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1708:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - referenceSequence (::std::auto_ptr< referenceSequence_type > x) - ^~~~~~~~ +freecontact_output_xsd.cxx:207:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::BioXSD::FeatureRecord > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15075:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - accession (::std::auto_ptr< accession_type > p); - ^~~~~~~~ +freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(xercesc_3_2::InputSource&, xml_schema::flags, const properties&)': +freecontact_output_xsd.cxx:220:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6543,11 +7334,10 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15151:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - entryUri (::std::auto_ptr< entryUri_type > p); - ^~~~~~~~ +freecontact_output_xsd.cxx: At global scope: +freecontact_output_xsd.cxx:225:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::BioXSD::FeatureRecord > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6555,11 +7345,10 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15227:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - entryVersion (::std::auto_ptr< entryVersion_type > p); - ^~~~~~~~ +freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(xercesc_3_2::InputSource&, xml_schema::error_handler&, xml_schema::flags, const properties&)': +freecontact_output_xsd.cxx:238:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6567,11 +7356,10 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15305:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - date (::std::auto_ptr< date_type > p); - ^~~~~~~~ +freecontact_output_xsd.cxx: At global scope: +freecontact_output_xsd.cxx:243:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::BioXSD::FeatureRecord > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6579,21 +7367,21 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1778:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - predicted (::std::auto_ptr< predicted_type > x) - ^~~~~~~~ +freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(xercesc_3_2::InputSource&, xercesc_3_2::DOMErrorHandler&, xml_schema::flags, const properties&)': +freecontact_output_xsd.cxx:256:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15481:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ontologyName (::std::auto_ptr< ontologyName_type > p); - ^~~~~~~~ +freecontact_output_xsd.cxx: At global scope: +freecontact_output_xsd.cxx:261:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::BioXSD::FeatureRecord > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6601,11 +7389,10 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15559:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ontologyUri (::std::auto_ptr< ontologyUri_type > p); - ^~~~~~~~ +freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(const xercesc_3_2::DOMDocument&, xml_schema::flags, const properties&)': +freecontact_output_xsd.cxx:271:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6613,11 +7400,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15635:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ontologyVersion (::std::auto_ptr< ontologyVersion_type > p); - ^~~~~~~~ +freecontact_output_xsd.cxx:280:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6625,9 +7410,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1808:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - experimental (::std::auto_ptr< experimental_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:110:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + sequence (::std::auto_ptr< sequence_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6635,9 +7420,19 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1836:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - method (::std::auto_ptr< method_type > x) - ^~~~~~~~ +freecontact_output_xsd.cxx:289:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::BioXSD::FeatureRecord > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66, + from freecontact_output_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:140:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + species (::std::auto_ptr< species_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6645,11 +7440,10 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15870:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - accession (::std::auto_ptr< accession_type > p); - ^~~~~~~~ +freecontact_output_xsd.cxx: At global scope: +freecontact_output_xsd.cxx:307:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::BioXSD::FeatureRecord > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6657,11 +7451,10 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:15946:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - conceptUri (::std::auto_ptr< conceptUri_type > p); - ^~~~~~~~ +freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(xsd::cxx::xml::dom::auto_ptr, xml_schema::flags, const properties&)': +freecontact_output_xsd.cxx:329:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6669,11 +7462,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16028:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - term (::std::auto_ptr< term_type > p); - ^~~~~~~~ +freecontact_output_xsd.cxx:339:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::BioXSD::FeatureRecord > r ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, @@ -6681,21 +7472,19 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16207:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - speciesName (::std::auto_ptr< speciesName_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:170:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + reference (::std::auto_ptr< reference_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1882:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - methodIdRef (::std::auto_ptr< methodIdRef_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:200:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + name (::std::auto_ptr< name_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6703,69 +7492,59 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16283:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - speciesNote (::std::auto_ptr< speciesNote_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:230:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + note (::std::auto_ptr< note_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:22916:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - relationName (::std::auto_ptr< relationName_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:260:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + translationData (::std::auto_ptr< translationData_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16459:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:290:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16538:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - supersequence (::std::auto_ptr< supersequence_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:376:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + note (::std::auto_ptr< note_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16617:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - supersequenceName (::std::auto_ptr< supersequenceName_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:420:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + pos (::std::auto_ptr< pos_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1934:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - method (::std::auto_ptr< method_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:444:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + len (::std::auto_ptr< len_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6773,45 +7552,39 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16693:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - sequenceVersion (::std::auto_ptr< sequenceVersion_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:478:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + min (::std::auto_ptr< min_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16769:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - variantAccession (::std::auto_ptr< variantAccession_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:508:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + max (::std::auto_ptr< max_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:16845:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - variantNote (::std::auto_ptr< variantNote_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:538:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + strand (::std::auto_ptr< strand_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1964:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - methodIdRef (::std::auto_ptr< methodIdRef_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:562:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + minCertainty (::std::auto_ptr< minCertainty_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6819,9 +7592,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2012:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - verdict (::std::auto_ptr< verdict_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:592:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + maxCertainty (::std::auto_ptr< maxCertainty_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6829,45 +7602,39 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17130:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - name (::std::auto_ptr< name_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:634:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + pos (::std::auto_ptr< pos_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17206:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - uri (::std::auto_ptr< uri_type > p); +BioXSD-1.1_xsd.cxx:658:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + bases (::std::auto_ptr< bases_type > x) ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17282:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - version (::std::auto_ptr< version_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:692:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + localAlignmentPosition (::std::auto_ptr< localAlignmentPosition_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2040:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - dataReference (::std::auto_ptr< dataReference_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:722:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + sequenceRecord (::std::auto_ptr< sequenceRecord_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6875,52 +7642,41 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17358:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - date (::std::auto_ptr< date_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:752:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + sequenceReference (::std::auto_ptr< sequenceReference_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17434:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - wsdl (::std::auto_ptr< wsdl_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:782:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + sequenceName (::std::auto_ptr< sequenceName_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17510:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - wsdlService (::std::auto_ptr< wsdlService_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:812:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + species (::std::auto_ptr< species_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:23505:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - canonicalVariant (::std::auto_ptr< canonicalVariant_type > p); - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17586:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - wsdlPort (::std::auto_ptr< wsdlPort_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:22916:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + relationName (::std::auto_ptr< relationName_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -6928,16 +7684,19 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:842:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + genomeBuild (::std::auto_ptr< genomeBuild_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2088:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - verdict (::std::auto_ptr< verdict_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:872:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + chromosome (::std::auto_ptr< chromosome_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -6945,44 +7704,40 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17662:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:902:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + subsequencePosition (::std::auto_ptr< subsequencePosition_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17738:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:932:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + variantAccession (::std::auto_ptr< variantAccession_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:17817:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - webserviceDate (::std::auto_ptr< webserviceDate_type > p); + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:23505:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + canonicalVariant (::std::auto_ptr< canonicalVariant_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2118:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - reliability (::std::auto_ptr< reliability_type > x) +BioXSD-1.1_xsd.cxx:962:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + variantNote (::std::auto_ptr< variantNote_type > x) ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -7051,29 +7806,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2206:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - name (::std::auto_ptr< name_type > x) - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2236:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - index (::std::auto_ptr< index_type > x) - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2266:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - unit (::std::auto_ptr< unit_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1046:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + reversedDirection (::std::auto_ptr< reversedDirection_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7081,8 +7816,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2296:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - note (::std::auto_ptr< note_type > x) +BioXSD-1.1_xsd.cxx:1114:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + name (::std::auto_ptr< name_type > x) ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -7103,9 +7838,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2330:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - position (::std::auto_ptr< position_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1180:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + className (::std::auto_ptr< className_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7161,16 +7896,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2354:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - value (::std::auto_ptr< value_type > x) - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24580:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -7195,6 +7920,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1228:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + properties (::std::auto_ptr< properties_type > x) + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24734:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -7202,14 +7930,18 @@ ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2384:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > x) - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24810:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -7222,16 +7954,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2418:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - pos (::std::auto_ptr< pos_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1262:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + specificFeatureName (::std::auto_ptr< specificFeatureName_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7256,9 +7981,6 @@ BioXSD-1.1_xsd.hxx:25046:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] condensedReferences (::std::auto_ptr< condensedReferences_type > p); ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2448:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - strand (::std::auto_ptr< strand_type > x) - ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -7266,26 +7988,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2472:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - certainty (::std::auto_ptr< certainty_type > x) - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2516:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - pos (::std::auto_ptr< pos_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1346:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + note (::std::auto_ptr< note_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7305,39 +8010,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2546:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - strand (::std::auto_ptr< strand_type > x) - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2570:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - certainty (::std::auto_ptr< certainty_type > x) - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2614:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - pos (::std::auto_ptr< pos_type > x) - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2644:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - strand (::std::auto_ptr< strand_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1398:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + appliesToWholeSequence (::std::auto_ptr< appliesToWholeSequence_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7345,9 +8020,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2668:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - certainty (::std::auto_ptr< certainty_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1428:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + position (::std::auto_ptr< position_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7355,9 +8030,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2712:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - min (::std::auto_ptr< min_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1476:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + occurrenceName (::std::auto_ptr< occurrenceName_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7365,9 +8040,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2742:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - max (::std::auto_ptr< max_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1506:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + occurrenceNote (::std::auto_ptr< occurrenceNote_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7375,9 +8050,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2772:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - strand (::std::auto_ptr< strand_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1536:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + featureTypeDetails (::std::auto_ptr< featureTypeDetails_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7385,9 +8060,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2796:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - minCertainty (::std::auto_ptr< minCertainty_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1602:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + frame (::std::auto_ptr< frame_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7395,9 +8070,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2826:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - maxCertainty (::std::auto_ptr< maxCertainty_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1632:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + phase (::std::auto_ptr< phase_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7405,9 +8080,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2870:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - max (::std::auto_ptr< max_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1680:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + alignment (::std::auto_ptr< alignment_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7415,9 +8090,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2894:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - certainty (::std::auto_ptr< certainty_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1708:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + referenceSequence (::std::auto_ptr< referenceSequence_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7425,8 +8100,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2956:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - insertion (::std::auto_ptr< insertion_type > x) +BioXSD-1.1_xsd.cxx:1778:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + predicted (::std::auto_ptr< predicted_type > x) ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -7447,16 +8122,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3004:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - nextPoint (::std::auto_ptr< nextPoint_type > x) - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:25932:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -7469,6 +8134,16 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1808:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + experimental (::std::auto_ptr< experimental_type > x) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:26122:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -7481,16 +8156,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3034:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - nextPartition (::std::auto_ptr< nextPartition_type > x) - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:26253:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -7503,9 +8168,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3064:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - samePoint (::std::auto_ptr< samePoint_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1836:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + method (::std::auto_ptr< method_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7513,9 +8178,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3094:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - samePartition (::std::auto_ptr< samePartition_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1882:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + methodIdRef (::std::auto_ptr< methodIdRef_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7523,9 +8188,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3124:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - outside (::std::auto_ptr< outside_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1934:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + method (::std::auto_ptr< method_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7557,16 +8222,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3162:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - correspondance (::std::auto_ptr< correspondance_type > x) - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:26933:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -7591,9 +8246,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3210:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - insertion (::std::auto_ptr< insertion_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1964:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + methodIdRef (::std::auto_ptr< methodIdRef_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7601,9 +8256,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3258:37: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - explicitSequenceReference (::std::auto_ptr< explicitSequenceReference_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2012:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + verdict (::std::auto_ptr< verdict_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7611,21 +8266,29 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27164:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - localId (::std::auto_ptr< localId_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2040:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + dataReference (::std::auto_ptr< dataReference_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3296:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - reference (::std::auto_ptr< reference_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2088:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + verdict (::std::auto_ptr< verdict_type > x) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2118:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + reliability (::std::auto_ptr< reliability_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7635,6 +8298,18 @@ ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:27164:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + localId (::std::auto_ptr< localId_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:27316:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] localId (::std::auto_ptr< localId_type > p); ^~~~~~~~ @@ -7657,9 +8332,39 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3348:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - geneticCode (::std::auto_ptr< geneticCode_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2206:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + name (::std::auto_ptr< name_type > x) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2236:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + index (::std::auto_ptr< index_type > x) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2266:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + unit (::std::auto_ptr< unit_type > x) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2296:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + note (::std::auto_ptr< note_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7679,9 +8384,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3378:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - phase (::std::auto_ptr< phase_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2330:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + position (::std::auto_ptr< position_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7701,9 +8406,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3408:40: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - reversedTranslationDirection (::std::auto_ptr< reversedTranslationDirection_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2354:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + value (::std::auto_ptr< value_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7723,6 +8428,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2384:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > x) + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:28001:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -7730,13 +8438,30 @@ ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3446:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - dbName (::std::auto_ptr< dbName_type > x) +BioXSD-1.1_xsd.cxx:2418:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + pos (::std::auto_ptr< pos_type > x) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2448:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + strand (::std::auto_ptr< strand_type > x) ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -7757,9 +8482,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3476:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - dbUri (::std::auto_ptr< dbUri_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2472:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + certainty (::std::auto_ptr< certainty_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7767,21 +8492,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:22916:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - relationName (::std::auto_ptr< relationName_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3506:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - dbVersion (::std::auto_ptr< dbVersion_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2516:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + pos (::std::auto_ptr< pos_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7789,9 +8502,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3560:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - wsdl (::std::auto_ptr< wsdl_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2546:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + strand (::std::auto_ptr< strand_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7823,6 +8536,29 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2570:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + certainty (::std::auto_ptr< certainty_type > x) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2614:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + pos (::std::auto_ptr< pos_type > x) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2644:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + strand (::std::auto_ptr< strand_type > x) + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:28623:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -7830,6 +8566,13 @@ ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here @@ -7859,6 +8602,16 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2668:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + certainty (::std::auto_ptr< certainty_type > x) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:28851:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -7895,31 +8648,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:23505:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - canonicalVariant (::std::auto_ptr< canonicalVariant_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3590:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - wsdlService (::std::auto_ptr< wsdlService_type > x) - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3620:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - wsdlPort (::std::auto_ptr< wsdlPort_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2712:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + min (::std::auto_ptr< min_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7927,21 +8658,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:23645:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - missing (::std::auto_ptr< missing_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3650:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - webserviceOperation (::std::auto_ptr< webserviceOperation_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2742:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + max (::std::auto_ptr< max_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7949,18 +8668,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:23787:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - position (::std::auto_ptr< position_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:29244:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -7973,9 +8680,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3680:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - webserviceVersion (::std::auto_ptr< webserviceVersion_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2772:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + strand (::std::auto_ptr< strand_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -7983,57 +8690,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:23961:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - alignmentOfReference (::std::auto_ptr< alignmentOfReference_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24019:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - alignedSequence (::std::auto_ptr< alignedSequence_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:29415:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - relationName (::std::auto_ptr< relationName_type > p); - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24042:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - alignment (::std::auto_ptr< alignedSequence_type >); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3710:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - webserviceDate (::std::auto_ptr< webserviceDate_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2796:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + minCertainty (::std::auto_ptr< minCertainty_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8041,9 +8700,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3744:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - accession (::std::auto_ptr< accession_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2826:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + maxCertainty (::std::auto_ptr< maxCertainty_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8053,9 +8712,9 @@ ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:29826:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - localIdRef (::std::auto_ptr< localIdRef_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:29415:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + relationName (::std::auto_ptr< relationName_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -8063,55 +8722,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3774:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - entryUri (::std::auto_ptr< entryUri_type > x) - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24200:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24276:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - sequenceReference (::std::auto_ptr< sequenceReference_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24352:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - sequenceName (::std::auto_ptr< sequenceName_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3804:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - entryVersion (::std::auto_ptr< entryVersion_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2870:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + max (::std::auto_ptr< max_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8119,135 +8732,29 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24428:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - species (::std::auto_ptr< species_type > p); +BioXSD-1.1_xsd.cxx:2894:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + certainty (::std::auto_ptr< certainty_type > x) ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24504:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - genomeBuild (::std::auto_ptr< genomeBuild_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24580:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - chromosome (::std::auto_ptr< chromosome_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3834:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - date (::std::auto_ptr< date_type > x) - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24658:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24734:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - variantAccession (::std::auto_ptr< variantAccession_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24810:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - variantNote (::std::auto_ptr< variantNote_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3868:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ontologyName (::std::auto_ptr< ontologyName_type > x) - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:24970:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - feature (::std::auto_ptr< feature_type > p); +BioXSD-1.1_xsd.cxx:2956:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + insertion (::std::auto_ptr< insertion_type > x) ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:25046:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - condensedReferences (::std::auto_ptr< condensedReferences_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3898:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ontologyUri (::std::auto_ptr< ontologyUri_type > x) - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3928:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ontologyVersion (::std::auto_ptr< ontologyVersion_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3004:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + nextPoint (::std::auto_ptr< nextPoint_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8255,21 +8762,21 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:25133:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - annotation (::std::auto_ptr< feature_type >); +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:29826:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + localIdRef (::std::auto_ptr< localIdRef_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3986:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - accession (::std::auto_ptr< accession_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3034:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + nextPartition (::std::auto_ptr< nextPartition_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8277,9 +8784,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4016:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - conceptUri (::std::auto_ptr< conceptUri_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3064:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + samePoint (::std::auto_ptr< samePoint_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8287,9 +8794,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4046:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - term (::std::auto_ptr< term_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3094:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + samePartition (::std::auto_ptr< samePartition_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8297,9 +8804,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4080:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - speciesName (::std::auto_ptr< speciesName_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3124:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + outside (::std::auto_ptr< outside_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8307,9 +8814,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4110:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - speciesNote (::std::auto_ptr< speciesNote_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3162:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + correspondance (::std::auto_ptr< correspondance_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8317,9 +8824,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4144:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - subsequencePosition (::std::auto_ptr< subsequencePosition_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3210:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + insertion (::std::auto_ptr< insertion_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8327,9 +8834,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4174:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - supersequence (::std::auto_ptr< supersequence_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3258:37: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + explicitSequenceReference (::std::auto_ptr< explicitSequenceReference_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8337,9 +8844,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4204:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - supersequenceName (::std::auto_ptr< supersequenceName_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3296:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + reference (::std::auto_ptr< reference_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8347,9 +8854,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4234:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - sequenceVersion (::std::auto_ptr< sequenceVersion_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3348:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + geneticCode (::std::auto_ptr< geneticCode_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8357,9 +8864,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4264:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - variantAccession (::std::auto_ptr< variantAccession_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3378:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + phase (::std::auto_ptr< phase_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8367,9 +8874,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4294:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - variantNote (::std::auto_ptr< variantNote_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3408:40: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + reversedTranslationDirection (::std::auto_ptr< reversedTranslationDirection_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8377,9 +8884,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4358:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - name (::std::auto_ptr< name_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3446:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + dbName (::std::auto_ptr< dbName_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8387,9 +8894,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4388:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - uri (::std::auto_ptr< uri_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3476:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + dbUri (::std::auto_ptr< dbUri_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8397,9 +8904,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4418:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - version (::std::auto_ptr< version_type > x) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3506:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + dbVersion (::std::auto_ptr< dbVersion_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8407,20 +8914,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:25778:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - localId (::std::auto_ptr< localId_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4448:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - date (::std::auto_ptr< date_type > x) +BioXSD-1.1_xsd.cxx:3560:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + wsdl (::std::auto_ptr< wsdl_type > x) ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -8429,18 +8924,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:25932:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - code (::std::auto_ptr< code_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.cxx:41: freecontact_input_xsd.hxx:723:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] flat (::std::auto_ptr< flat_type > p); @@ -8456,9 +8939,6 @@ freecontact_input_xsd.hxx:746:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] FcAlignment (::std::auto_ptr< flat_type >); ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4478:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - wsdl (::std::auto_ptr< wsdl_type > x) - ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, @@ -8466,6 +8946,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3590:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + wsdlService (::std::auto_ptr< wsdlService_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8473,42 +8956,40 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:26122:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - aminoacid (::std::auto_ptr< aminoacid_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3620:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + wsdlPort (::std::auto_ptr< wsdlPort_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:26253:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - note (::std::auto_ptr< note_type > p); - ^~~~~~~~ +In file included from freecontact_input_xsd.cxx:41: +freecontact_input_xsd.hxx:847:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4508:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - wsdlService (::std::auto_ptr< wsdlService_type > x) - ^~~~~~~~ +In file included from freecontact_input_xsd.cxx:41: +freecontact_input_xsd.hxx:863:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:847:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +freecontact_input_xsd.hxx:881:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -8518,28 +8999,30 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4538:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - wsdlPort (::std::auto_ptr< wsdlPort_type > x) - ^~~~~~~~ +In file included from freecontact_input_xsd.cxx:41: +freecontact_input_xsd.hxx:897:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4568:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - webserviceOperation (::std::auto_ptr< webserviceOperation_type > x) - ^~~~~~~~ +In file included from freecontact_input_xsd.cxx:41: +freecontact_input_xsd.hxx:913:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:863:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +freecontact_input_xsd.hxx:931:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -8549,11 +9032,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4598:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - webserviceVersion (::std::auto_ptr< webserviceVersion_type > x) - ^~~~~~~~ In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:881:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +freecontact_input_xsd.hxx:951:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -8563,6 +9043,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3650:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + webserviceOperation (::std::auto_ptr< webserviceOperation_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8571,7 +9054,7 @@ template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:897:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +freecontact_input_xsd.hxx:973:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -8582,7 +9065,7 @@ template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:913:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +freecontact_input_xsd.hxx:996:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -8593,7 +9076,7 @@ template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:931:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +freecontact_input_xsd.hxx:1013:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -8603,9 +9086,20 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4628:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - webserviceDate (::std::auto_ptr< webserviceDate_type > x) - ^~~~~~~~ +In file included from freecontact_input_xsd.cxx:41: +freecontact_input_xsd.hxx:1029:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66, + from freecontact_input_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3680:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + webserviceVersion (::std::auto_ptr< webserviceVersion_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -8614,7 +9108,7 @@ template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:951:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +freecontact_input_xsd.hxx:1047:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -8625,7 +9119,7 @@ template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:973:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +freecontact_input_xsd.hxx:1061:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -8636,7 +9130,7 @@ template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:996:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +freecontact_input_xsd.hxx:1078:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -8646,322 +9140,293 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:26781:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - method (::std::auto_ptr< method_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3710:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + webserviceDate (::std::auto_ptr< webserviceDate_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:1013:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3744:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + accession (::std::auto_ptr< accession_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:26857:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ontology (::std::auto_ptr< ontology_type > p); - ^~~~~~~~ -In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:1029:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3774:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + entryUri (::std::auto_ptr< entryUri_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3804:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + entryVersion (::std::auto_ptr< entryVersion_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:1047:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3834:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + date (::std::auto_ptr< date_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:26933:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - database (::std::auto_ptr< database_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3868:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ontologyName (::std::auto_ptr< ontologyName_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:1061:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3898:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ontologyUri (::std::auto_ptr< ontologyUri_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.cxx:41: -freecontact_input_xsd.hxx:1078:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3928:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ontologyVersion (::std::auto_ptr< ontologyVersion_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66, - from freecontact_input_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27009:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - scoreType (::std::auto_ptr< scoreType_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3986:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + accession (::std::auto_ptr< accession_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27164:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - localId (::std::auto_ptr< localId_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4016:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + conceptUri (::std::auto_ptr< conceptUri_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27316:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - localId (::std::auto_ptr< localId_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4046:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + term (::std::auto_ptr< term_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27468:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - localId (::std::auto_ptr< localId_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4080:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + speciesName (::std::auto_ptr< speciesName_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27620:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - localId (::std::auto_ptr< localId_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4110:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + speciesNote (::std::auto_ptr< speciesNote_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27773:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - localId (::std::auto_ptr< localId_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4144:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + subsequencePosition (::std::auto_ptr< subsequencePosition_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:27925:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - feature (::std::auto_ptr< feature_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4174:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + supersequence (::std::auto_ptr< supersequence_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28001:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - condensedReferences (::std::auto_ptr< condensedReferences_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4204:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + supersequenceName (::std::auto_ptr< supersequenceName_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28088:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - annotation1 (::std::auto_ptr< feature_type >); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4234:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + sequenceVersion (::std::auto_ptr< sequenceVersion_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28471:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - method (::std::auto_ptr< method_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4264:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + variantAccession (::std::auto_ptr< variantAccession_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28547:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - methodIdRef (::std::auto_ptr< methodIdRef_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4294:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + variantNote (::std::auto_ptr< variantNote_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28623:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ontology (::std::auto_ptr< ontology_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4358:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + name (::std::auto_ptr< name_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28699:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ontologyIdRef (::std::auto_ptr< ontologyIdRef_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4388:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + uri (::std::auto_ptr< uri_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28775:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - database (::std::auto_ptr< database_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4418:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + version (::std::auto_ptr< version_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28851:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - databaseIdRef (::std::auto_ptr< databaseIdRef_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4448:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + date (::std::auto_ptr< date_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:28927:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - scoreType (::std::auto_ptr< scoreType_type > p); +BioXSD-1.1_xsd.cxx:4478:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + wsdl (::std::auto_ptr< wsdl_type > x) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4508:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + wsdlService (::std::auto_ptr< wsdlService_type > x) ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:29003:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); +BioXSD-1.1_xsd.cxx:4538:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + wsdlPort (::std::auto_ptr< wsdlPort_type > x) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4568:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + webserviceOperation (::std::auto_ptr< webserviceOperation_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:29244:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - localId (::std::auto_ptr< localId_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4598:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + webserviceVersion (::std::auto_ptr< webserviceVersion_type > x) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:29415:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - relationName (::std::auto_ptr< relationName_type > p); +BioXSD-1.1_xsd.cxx:4628:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + webserviceDate (::std::auto_ptr< webserviceDate_type > x) ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ @@ -8975,18 +9440,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:29826:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - localIdRef (::std::auto_ptr< localIdRef_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ BioXSD-1.1_xsd.cxx:5311:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] relationName (::std::auto_ptr< relationName_type > x) ^~~~~~~~ @@ -9117,17 +9570,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.cxx:41: -freecontact_output_xsd.hxx:681:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::BioXSD::FeatureRecord > - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ BioXSD-1.1_xsd.cxx:5837:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] variantAccession (::std::auto_ptr< variantAccession_type > x) ^~~~~~~~ @@ -9148,50 +9590,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.cxx:41: -freecontact_output_xsd.hxx:697:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::BioXSD::FeatureRecord > - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.cxx:41: -freecontact_output_xsd.hxx:715:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::BioXSD::FeatureRecord > - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.cxx:41: -freecontact_output_xsd.hxx:731:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::BioXSD::FeatureRecord > - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.cxx:41: -freecontact_output_xsd.hxx:747:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::BioXSD::FeatureRecord > - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ BioXSD-1.1_xsd.cxx:5895:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] feature (::std::auto_ptr< feature_type > x) ^~~~~~~~ @@ -9202,94 +9600,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.cxx:41: -freecontact_output_xsd.hxx:765:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::BioXSD::FeatureRecord > - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.cxx:41: -freecontact_output_xsd.hxx:785:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::BioXSD::FeatureRecord > - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.cxx:41: -freecontact_output_xsd.hxx:807:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::BioXSD::FeatureRecord > - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.cxx:41: -freecontact_output_xsd.hxx:830:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::BioXSD::FeatureRecord > - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.cxx:41: -freecontact_output_xsd.hxx:847:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::BioXSD::FeatureRecord > - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.cxx:41: -freecontact_output_xsd.hxx:863:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::BioXSD::FeatureRecord > - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.cxx:41: -freecontact_output_xsd.hxx:881:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::BioXSD::FeatureRecord > - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -In file included from freecontact_output_xsd.cxx:41: -freecontact_output_xsd.hxx:895:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::BioXSD::FeatureRecord > - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ BioXSD-1.1_xsd.cxx:5925:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] condensedReferences (::std::auto_ptr< condensedReferences_type > x) ^~~~~~~~ @@ -9300,17 +9610,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_output_xsd.cxx:41: -freecontact_output_xsd.hxx:912:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::BioXSD::FeatureRecord > - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ BioXSD-1.1_xsd.cxx:6089:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] localId (::std::auto_ptr< localId_type > x) ^~~~~~~~ @@ -9794,16 +10093,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_output_xsd.cxx:68:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::BioXSD::FeatureRecord > - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ freecontact_input_xsd.cxx: At global scope: freecontact_input_xsd.cxx:405:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > @@ -9974,72 +10263,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(const string&, xml_schema::flags, const properties&)': -freecontact_output_xsd.cxx:85:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -freecontact_output_xsd.cxx: At global scope: -freecontact_output_xsd.cxx:90:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::BioXSD::FeatureRecord > - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(const string&, xml_schema::error_handler&, xml_schema::flags, const properties&)': -freecontact_output_xsd.cxx:107:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -freecontact_output_xsd.cxx: At global scope: -freecontact_output_xsd.cxx:112:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::BioXSD::FeatureRecord > - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(const string&, xercesc_3_2::DOMErrorHandler&, xml_schema::flags, const properties&)': -freecontact_output_xsd.cxx:125:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -freecontact_output_xsd.cxx: At global scope: -freecontact_output_xsd.cxx:130:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::BioXSD::FeatureRecord > - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:2105:45: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -10052,16 +10275,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_output_xsd.cxx:143:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::BioXSD::FeatureRecord > - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:2186:44: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -10074,16 +10287,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_output_xsd.cxx:157:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::BioXSD::FeatureRecord > - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:2267:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -10096,13 +10299,13 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_output_xsd.cxx:167:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::BioXSD::FeatureRecord > - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:7570:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + BiosequenceRecord (::std::auto_ptr< sequence_type > sequence) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ @@ -10118,69 +10321,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_output_xsd.cxx:181:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::BioXSD::FeatureRecord > - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -freecontact_output_xsd.cxx:196:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::BioXSD::FeatureRecord > - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -freecontact_output_xsd.cxx:207:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::BioXSD::FeatureRecord > - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(xercesc_3_2::InputSource&, xml_schema::flags, const properties&)': -freecontact_output_xsd.cxx:220:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -freecontact_output_xsd.cxx: At global scope: -freecontact_output_xsd.cxx:225:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::BioXSD::FeatureRecord > - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(xercesc_3_2::InputSource&, xml_schema::error_handler&, xml_schema::flags, const properties&)': -freecontact_output_xsd.cxx:238:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:2611:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -10193,47 +10333,14 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_output_xsd.cxx: At global scope: -freecontact_output_xsd.cxx:243:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::BioXSD::FeatureRecord > - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(xercesc_3_2::InputSource&, xercesc_3_2::DOMErrorHandler&, xml_schema::flags, const properties&)': -freecontact_output_xsd.cxx:256:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -freecontact_output_xsd.cxx: At global scope: -freecontact_output_xsd.cxx:261:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::BioXSD::FeatureRecord > - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(const xercesc_3_2::DOMDocument&, xml_schema::flags, const properties&)': -freecontact_output_xsd.cxx:271:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( - ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::BiosequenceRecord::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:7630:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ @@ -10261,16 +10368,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_output_xsd.cxx:280:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:3287:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -10331,16 +10428,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:7570:29: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - BiosequenceRecord (::std::auto_ptr< sequence_type > sequence) - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:3877:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -10365,17 +10452,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::BiosequenceRecord::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:7630:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:4110:36: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -10508,27 +10584,39 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_output_xsd.cxx:289:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::BioXSD::FeatureRecord > r ( - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:7641:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< sequence_type > r ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_output_xsd.cxx: At global scope: -freecontact_output_xsd.cxx:307:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::BioXSD::FeatureRecord > - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:7658:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:7669:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< species_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:7686:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:5589:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -10541,24 +10629,40 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(xsd::cxx::xml::dom::auto_ptr, xml_schema::flags, const properties&)': -freecontact_output_xsd.cxx:329:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact_output_xsd.cxx:339:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::BioXSD::FeatureRecord > r ( - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:7697:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< reference_type > r ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66, - from freecontact_output_xsd.cxx:41: + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:7714:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:7725:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< name_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ @@ -10586,20 +10690,18 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:6115:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - specificFeatureName (::std::auto_ptr< specificFeatureName_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/bits/locale_conv.h:41, - from /usr/include/c++/8/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: +BioXSD-1.1_xsd.cxx:7742:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:7641:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< sequence_type > r ( +BioXSD-1.1_xsd.cxx:7753:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< note_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -10608,19 +10710,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:6385:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - note (::std::auto_ptr< note_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/bits/locale_conv.h:41, - from /usr/include/c++/8/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:7658:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:7770:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -10630,8 +10720,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:7669:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< species_type > r ( +BioXSD-1.1_xsd.cxx:7781:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< translationData_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -10640,7 +10730,19 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:7686:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:6115:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + specificFeatureName (::std::auto_ptr< specificFeatureName_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/bits/locale_conv.h:41, + from /usr/include/c++/8/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:7798:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -10650,8 +10752,20 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:7697:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< reference_type > r ( +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:6385:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + note (::std::auto_ptr< note_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/bits/locale_conv.h:41, + from /usr/include/c++/8/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:7809:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< inlineBaseQuality_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -10672,16 +10786,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:7714:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:6703:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -10699,9 +10803,6 @@ BioXSD-1.1_xsd.hxx:6843:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] occurrenceName (::std::auto_ptr< occurrenceName_type > p); ^~~~~~~~ -BioXSD-1.1_xsd.cxx:7725:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< name_type > r ( - ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/boost/format.hpp:23, @@ -10709,13 +10810,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:6919:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -10728,16 +10822,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:7742:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:6995:32: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -10750,56 +10834,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:7753:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< note_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:7770:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:7781:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< translationData_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:7798:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:7809:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< inlineBaseQuality_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:7203:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -10824,6 +10858,17 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx: At global scope: +BioXSD-1.1_xsd.cxx:7880:43: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + GeneralNucleotideSequenceRecord (::std::auto_ptr< sequence_type > sequence) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:7419:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -10836,17 +10881,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx: At global scope: -BioXSD-1.1_xsd.cxx:7880:43: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - GeneralNucleotideSequenceRecord (::std::auto_ptr< sequence_type > sequence) - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ BioXSD-1.1_xsd.cxx:7929:42: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] GeneralAminoacidSequenceRecord (::std::auto_ptr< sequence_type > sequence) ^~~~~~~~ @@ -10867,16 +10901,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:8027:35: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - AminoacidSequenceRecord (::std::auto_ptr< sequence_type > sequence) - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:7588:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -10889,10 +10913,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::BiosequenceAlignment::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:8118:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:8027:35: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + AminoacidSequenceRecord (::std::auto_ptr< sequence_type > sequence) + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -10905,9 +10928,6 @@ BioXSD-1.1_xsd.hxx:7742:27: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] FeatureRecord (::std::auto_ptr< referenceSequence_type >); ^~~~~~~~ -BioXSD-1.1_xsd.cxx:8127:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< alignedBy_type > r ( - ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/boost/format.hpp:23, @@ -10915,33 +10935,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:8143:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:8152:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< alignedSequence_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:7901:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -10966,26 +10959,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:8168:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:8179:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< note_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:8130:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -11010,6 +10983,47 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::BiosequenceAlignment::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:8118:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:8127:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< alignedBy_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:8143:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:8152:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< alignedSequence_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:8357:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -11118,6 +11132,26 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:8168:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:8179:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< note_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:9566:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -11466,37 +11500,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::AlignedBiosequence::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:8924:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:8935:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< localAlignmentPosition_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:8952:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:13071:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -11509,46 +11512,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:8963:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< sequenceRecord_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:8980:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:8991:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< sequenceReference_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9008:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:13211:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -11561,36 +11524,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9019:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< sequenceName_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9036:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9047:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< species_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:13351:39: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -11603,74 +11536,11 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9064:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9075:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< genomeBuild_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9092:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9103:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< chromosome_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9120:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9131:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< subsequencePosition_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:13597:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] reference (::std::auto_ptr< reference_type > p); ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9148:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/boost/format.hpp:23, @@ -11678,63 +11548,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9159:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< variantAccession_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9176:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9187:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< variantNote_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9204:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9213:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< gap_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:13832:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -11771,36 +11584,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9229:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9238:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< insert_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9254:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:14226:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -11813,16 +11596,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9263:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< frameshift_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:14304:19: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -11859,16 +11632,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9279:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:14587:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -11893,9 +11656,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9290:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< reversedDirection_type > r ( - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:14739:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -11908,13 +11668,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:14815:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -11927,16 +11680,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9307:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:14894:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -11949,16 +11692,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9316:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< sequenceScore_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:15075:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -12199,17 +11932,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::FeatureType::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:9610:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:17282:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -12234,9 +11956,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9621:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< name_type > r ( - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:17434:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -12249,13 +11968,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:17510:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -12268,16 +11980,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9638:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:17586:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -12302,16 +12004,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9647:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< equalConcept_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:17738:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -12336,27 +12028,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9663:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9672:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< equalAlias_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9688:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::AlignedBiosequence::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:8924:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -12366,8 +12039,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9699:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< className_type > r ( +BioXSD-1.1_xsd.cxx:8935:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< localAlignmentPosition_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -12376,27 +12049,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9716:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9725:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< classConcept_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9741:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:8952:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -12406,8 +12059,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9752:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< properties_type > r ( +BioXSD-1.1_xsd.cxx:8963:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< sequenceRecord_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -12416,8 +12069,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::FeatureTypeDetails::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:9866:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:8980:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -12427,8 +12079,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9877:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< specificFeatureName_type > r ( +BioXSD-1.1_xsd.cxx:8991:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< sequenceReference_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -12437,47 +12089,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9894:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9903:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< specificFeatureConcept_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9919:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9928:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< specificFeatureAlias_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9944:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:9008:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -12487,9 +12099,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9953:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< databaseEntry_type > r ( - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9019:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< sequenceName_type > r ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -12497,7 +12109,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9969:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:9036:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -12507,8 +12119,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9980:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< note_type > r ( +BioXSD-1.1_xsd.cxx:9047:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< species_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -12517,18 +12129,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9998:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< association_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::FeatureOccurrenceData::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:10123:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:9064:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -12538,8 +12139,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10134:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< appliesToWholeSequence_type > r ( +BioXSD-1.1_xsd.cxx:9075:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< genomeBuild_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -12548,7 +12149,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10151:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:9092:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -12558,8 +12159,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10162:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< position_type > r ( +BioXSD-1.1_xsd.cxx:9103:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< chromosome_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -12568,7 +12169,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10179:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:9120:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -12578,9 +12179,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10188:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< occurrenceEntryReference_type > r ( - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9131:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< subsequencePosition_type > r ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -12588,7 +12189,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10204:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:9148:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -12598,8 +12199,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10215:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< occurrenceName_type > r ( +BioXSD-1.1_xsd.cxx:9159:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< variantAccession_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -12608,7 +12209,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10232:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:9176:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -12618,8 +12219,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10243:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< occurrenceNote_type > r ( +BioXSD-1.1_xsd.cxx:9187:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< variantNote_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -12628,7 +12229,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10260:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:9204:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -12638,9 +12239,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10271:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< featureTypeDetails_type > r ( - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9213:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< gap_type > r ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -12648,7 +12249,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10288:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:9229:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -12658,8 +12259,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10297:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< score_type > r ( +BioXSD-1.1_xsd.cxx:9238:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< insert_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -12668,7 +12269,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10313:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:9254:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -12678,8 +12279,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10322:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< evidence_type > r ( +BioXSD-1.1_xsd.cxx:9263:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< frameshift_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -12688,17 +12289,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10339:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< frame_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10352:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:9279:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -12708,8 +12299,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10363:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< phase_type > r ( +BioXSD-1.1_xsd.cxx:9290:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< reversedDirection_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -12718,8 +12309,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10381:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< variation_type > r ( +BioXSD-1.1_xsd.cxx:9307:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -12728,9 +12319,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10392:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< alignment_type > r ( - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9316:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< sequenceScore_type > r ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -12750,28 +12341,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx: At global scope: -BioXSD-1.1_xsd.cxx:10460:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - FeatureRecord (::std::auto_ptr< referenceSequence_type > referenceSequence) - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::FeatureRecord::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:10509:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< referenceSequence_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:23505:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -12784,16 +12353,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10523:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< annotation_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:23645:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -12818,16 +12377,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10534:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< blockWithOccurrenceReferences_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:23961:34: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -12948,22 +12497,11 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::Evidence::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:10633:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:24734:30: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] variantAccession (::std::auto_ptr< variantAccession_type > p); ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/boost/format.hpp:23, @@ -12983,26 +12521,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10644:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< predicted_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10661:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:24970:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -13015,16 +12533,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10672:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< experimental_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:25046:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -13049,10 +12557,10 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx: At global scope: -BioXSD-1.1_xsd.cxx:10733:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - MethodResult (::std::auto_ptr< method_type > method) - ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::FeatureType::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:9610:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -13060,10 +12568,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::MethodResult::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:10779:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< method_type > r ( - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9621:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< name_type > r ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -13071,7 +12578,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10792:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:9638:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -13081,8 +12588,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10801:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< score_type > r ( +BioXSD-1.1_xsd.cxx:9647:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< equalConcept_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -13091,9 +12598,18 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx: At global scope: -BioXSD-1.1_xsd.cxx:10868:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - Result (::std::auto_ptr< methodIdRef_type > methodIdRef) +BioXSD-1.1_xsd.cxx:9663:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9672:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< equalAlias_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -13102,8 +12618,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::Result::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:10913:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:9688:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -13113,8 +12628,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10924:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< methodIdRef_type > r ( +BioXSD-1.1_xsd.cxx:9699:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< className_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -13123,7 +12638,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10941:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:9716:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -13133,8 +12648,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10950:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< score_type > r ( +BioXSD-1.1_xsd.cxx:9725:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< classConcept_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -13143,56 +12658,48 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:25778:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - localId (::std::auto_ptr< localId_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/bits/locale_conv.h:41, - from /usr/include/c++/8/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: +BioXSD-1.1_xsd.cxx:9741:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:25932:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - code (::std::auto_ptr< code_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/bits/locale_conv.h:41, - from /usr/include/c++/8/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: +BioXSD-1.1_xsd.cxx:9752:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< properties_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:26122:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - aminoacid (::std::auto_ptr< aminoacid_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/bits/locale_conv.h:41, - from /usr/include/c++/8/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::FeatureTypeDetails::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:9866:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:26253:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - note (::std::auto_ptr< note_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/bits/locale_conv.h:41, - from /usr/include/c++/8/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: +BioXSD-1.1_xsd.cxx:9877:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< specificFeatureName_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::PredictionResult::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:11060:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:9894:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -13202,9 +12709,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11071:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< method_type > r ( - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9903:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< specificFeatureConcept_type > r ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -13212,7 +12719,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11088:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:9919:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -13222,9 +12729,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11099:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< methodIdRef_type > r ( - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9928:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< specificFeatureAlias_type > r ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -13232,7 +12739,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11116:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:9944:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -13242,8 +12749,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11125:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< score_type > r ( +BioXSD-1.1_xsd.cxx:9953:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< databaseEntry_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -13252,11 +12759,21 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9969:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:26781:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - method (::std::auto_ptr< method_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:25778:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + localId (::std::auto_ptr< localId_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/boost/format.hpp:23, @@ -13264,8 +12781,30 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11141:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:25932:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + code (::std::auto_ptr< code_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/bits/locale_conv.h:41, + from /usr/include/c++/8/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9980:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< note_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9998:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< association_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -13276,6 +12815,42 @@ ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:26122:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + aminoacid (::std::auto_ptr< aminoacid_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/bits/locale_conv.h:41, + from /usr/include/c++/8/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:26253:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + note (::std::auto_ptr< note_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/bits/locale_conv.h:41, + from /usr/include/c++/8/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:26781:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + method (::std::auto_ptr< method_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/bits/locale_conv.h:41, + from /usr/include/c++/8/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:26857:22: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ontology (::std::auto_ptr< ontology_type > p); ^~~~~~~~ @@ -13298,16 +12873,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11152:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< verdict_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:27009:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -13320,17 +12885,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx: At global scope: -BioXSD-1.1_xsd.cxx:11217:32: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ExperimentalEvidence (::std::auto_ptr< dataReference_type > dataReference) - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:27164:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -13367,20 +12921,21 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::ExperimentalEvidence::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:11268:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:27620:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + localId (::std::auto_ptr< localId_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/bits/locale_conv.h:41, + from /usr/include/c++/8/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:27620:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.hxx:27773:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] localId (::std::auto_ptr< localId_type > p); ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, @@ -13390,9 +12945,34 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11279:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< dataReference_type > r ( - ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:27925:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + feature (::std::auto_ptr< feature_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/bits/locale_conv.h:41, + from /usr/include/c++/8/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:28001:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + condensedReferences (::std::auto_ptr< condensedReferences_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/bits/locale_conv.h:41, + from /usr/include/c++/8/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::FeatureOccurrenceData::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:10123:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -13400,9 +12980,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11296:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10134:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< appliesToWholeSequence_type > r ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -13410,21 +12990,19 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:27773:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - localId (::std::auto_ptr< localId_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/bits/locale_conv.h:41, - from /usr/include/c++/8/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: +BioXSD-1.1_xsd.cxx:10151:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11305:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< citation_type > r ( - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10162:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< position_type > r ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -13432,7 +13010,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11321:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:10179:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -13444,9 +13022,9 @@ ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:27925:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - feature (::std::auto_ptr< feature_type > p); - ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28088:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + annotation1 (::std::auto_ptr< feature_type >); + ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/boost/format.hpp:23, @@ -13454,9 +13032,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11332:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< verdict_type > r ( - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10188:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< occurrenceEntryReference_type > r ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -13464,19 +13042,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:28001:33: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - condensedReferences (::std::auto_ptr< condensedReferences_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/bits/locale_conv.h:41, - from /usr/include/c++/8/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11349:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:10204:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -13486,8 +13052,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11360:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< reliability_type > r ( +BioXSD-1.1_xsd.cxx:10215:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< occurrenceName_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -13496,15 +13062,23 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:28088:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - annotation1 (::std::auto_ptr< feature_type >); - ^~~~~~~~ -In file included from /usr/include/c++/8/bits/locale_conv.h:41, - from /usr/include/c++/8/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: +BioXSD-1.1_xsd.cxx:10232:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10243:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< occurrenceNote_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ @@ -13580,8 +13154,27 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::ScoreType::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:11482:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:10260:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10271:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< featureTypeDetails_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10288:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -13591,6 +13184,16 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10297:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< score_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:28927:23: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] @@ -13603,21 +13206,23 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11491:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< concept_type > r ( - ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:29003:28: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: +In file included from /usr/include/c++/8/bits/locale_conv.h:41, + from /usr/include/c++/8/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:29244:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + localId (::std::auto_ptr< localId_type > p); + ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/boost/format.hpp:23, @@ -13625,7 +13230,19 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11507:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:29415:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + relationName (::std::auto_ptr< relationName_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/bits/locale_conv.h:41, + from /usr/include/c++/8/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10313:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -13635,8 +13252,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11516:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< method_type > r ( +BioXSD-1.1_xsd.cxx:10322:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< evidence_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -13645,7 +13262,29 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11532:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:29826:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + localIdRef (::std::auto_ptr< localIdRef_type > p); + ^~~~~~~~ +In file included from /usr/include/c++/8/bits/locale_conv.h:41, + from /usr/include/c++/8/locale:43, + from /usr/include/boost/format.hpp:23, + from _write_bioxsd.cpp:17: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10339:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< frame_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10352:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -13655,9 +13294,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11541:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< methodIdRef_type > r ( - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10363:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< phase_type > r ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -13665,45 +13304,40 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:29244:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - localId (::std::auto_ptr< localId_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/bits/locale_conv.h:41, - from /usr/include/c++/8/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: +BioXSD-1.1_xsd.cxx:10381:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< variation_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:29415:26: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - relationName (::std::auto_ptr< relationName_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/bits/locale_conv.h:41, - from /usr/include/c++/8/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: +BioXSD-1.1_xsd.cxx:10392:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< alignment_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:29826:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - localIdRef (::std::auto_ptr< localIdRef_type > p); - ^~~~~~~~ -In file included from /usr/include/c++/8/bits/locale_conv.h:41, - from /usr/include/c++/8/locale:43, - from /usr/include/boost/format.hpp:23, - from _write_bioxsd.cpp:17: +BioXSD-1.1_xsd.cxx: At global scope: +BioXSD-1.1_xsd.cxx:10460:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + FeatureRecord (::std::auto_ptr< referenceSequence_type > referenceSequence) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::Score::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:11679:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::FeatureRecord::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:10509:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< referenceSequence_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -13712,9 +13346,19 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11690:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< position_type > r ( - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10523:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< annotation_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10534:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< blockWithOccurrenceReferences_type > r ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -13744,6 +13388,10 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::Evidence::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:10633:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ In file included from _write_bioxsd.cpp:20: freecontact_input_xsd.hxx:847:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > @@ -13755,6 +13403,23 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10644:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< predicted_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from _write_bioxsd.cpp:20: freecontact_input_xsd.hxx:863:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > @@ -13777,6 +13442,16 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10661:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from _write_bioxsd.cpp:20: freecontact_input_xsd.hxx:897:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > @@ -13810,6 +13485,16 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10672:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< experimental_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from _write_bioxsd.cpp:20: freecontact_input_xsd.hxx:951:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > @@ -13898,6 +13583,243 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx: At global scope: +BioXSD-1.1_xsd.cxx:10733:24: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + MethodResult (::std::auto_ptr< method_type > method) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::MethodResult::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:10779:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< method_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10792:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10801:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< score_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx: At global scope: +BioXSD-1.1_xsd.cxx:10868:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + Result (::std::auto_ptr< methodIdRef_type > methodIdRef) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::Result::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:10913:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10924:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< methodIdRef_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10941:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10950:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< score_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::PredictionResult::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:11060:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11071:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< method_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11088:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11099:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< methodIdRef_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11116:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11125:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< score_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11141:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11152:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< verdict_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx: At global scope: +BioXSD-1.1_xsd.cxx:11217:32: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ExperimentalEvidence (::std::auto_ptr< dataReference_type > dataReference) + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::ExperimentalEvidence::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:11268:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11279:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< dataReference_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11296:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11305:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< citation_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11321:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from _write_bioxsd.cpp:21: freecontact_output_xsd.hxx:681:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > @@ -13924,6 +13846,36 @@ freecontact_output_xsd.hxx:715:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11332:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< verdict_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11349:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11360:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< reliability_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/boost/format.hpp:23, @@ -13942,17 +13894,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::GeneralSequencePosition::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:12613:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from _write_bioxsd.cpp:21: freecontact_output_xsd.hxx:747:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > @@ -13986,16 +13927,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12622:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< point_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from _write_bioxsd.cpp:21: freecontact_output_xsd.hxx:807:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > @@ -14062,16 +13993,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12638:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ In file included from _write_bioxsd.cpp:21: freecontact_output_xsd.hxx:912:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > @@ -14083,17 +14004,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12649:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< insertion_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12666:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::ScoreType::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:11482:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -14103,8 +14015,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12675:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< segment_type > r ( +BioXSD-1.1_xsd.cxx:11491:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< concept_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -14113,7 +14025,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12691:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:11507:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -14123,9 +14035,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12702:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< nextPoint_type > r ( - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11516:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< method_type > r ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -14133,7 +14045,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12719:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:11532:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -14143,9 +14055,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12730:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< nextPartition_type > r ( - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11541:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< methodIdRef_type > r ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -14153,7 +14065,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12747:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::Score::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:11679:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -14163,8 +14076,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12758:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< samePoint_type > r ( +BioXSD-1.1_xsd.cxx:11690:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< position_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -14173,7 +14086,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12775:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::GeneralSequencePosition::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:12613:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -14183,9 +14097,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12786:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< samePartition_type > r ( - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:12622:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< point_type > r ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -14193,7 +14107,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12803:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:12638:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -14203,8 +14117,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12814:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< outside_type > r ( +BioXSD-1.1_xsd.cxx:12649:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< insertion_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -14213,8 +14127,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::GeneralOutsideSequencePosition::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:12970:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:12666:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -14224,9 +14137,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12981:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< correspondance_type > r ( - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:12675:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< segment_type > r ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -14234,7 +14147,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12998:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:12691:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -14244,9 +14157,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13007:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< point_type > r ( - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:12702:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< nextPoint_type > r ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -14254,7 +14167,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13023:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:12719:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -14264,8 +14177,12 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13034:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< insertion_type > r ( +In file included from _write_bioxsd.cpp:22: +../lib/freecontact.h:69:54: warning: ignoring attributes on template argument 'freecontact::__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes] + class LIBFREEC_API ali_t : public std::vector<__m128i> + ^ +BioXSD-1.1_xsd.cxx:12730:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< nextPartition_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -14274,7 +14191,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13051:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:12747:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -14284,9 +14201,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13060:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< segment_type > r ( - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:12758:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< samePoint_type > r ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -14294,7 +14211,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13076:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:12775:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -14304,8 +14221,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13087:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< explicitSequenceReference_type > r ( +BioXSD-1.1_xsd.cxx:12786:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< samePartition_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -14314,8 +14231,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::GeneticCode::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:13231:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:12803:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -14325,8 +14241,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13242:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< reference_type > r ( +BioXSD-1.1_xsd.cxx:12814:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< outside_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -14335,18 +14251,20 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13260:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< codon_type > r ( - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66, - from BioXSD-1.1_xsd.cxx:41: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::TranslationData::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:13354:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +In file included from _write_bioxsd.cpp:22: +../lib/freecontact.h:113:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + ali_t& push(const std::vector& __al) throw (alilen_error); + ^~~~~ +../lib/freecontact.h:116:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + inline ali_t& push(const std::string& __l) throw (alilen_error) + ^~~~~ +In file included from _write_bioxsd.cpp:22: +../lib/freecontact.h: In constructor 'freecontact::ali_t::ali_t(uint16_t)': +../lib/freecontact.h:80:79: warning: ignoring attributes on template argument 'freecontact::__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes] + ali_t( const uint16_t __alilen = 0 ) : std::vector<__m128i>(), seqcnt(0), alilen(__alilen), alilen16(( alilen-1 )/16 + 1), alilenpad( 16 * alilen16 ) + ^ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::GeneralOutsideSequencePosition::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:12970:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -14356,8 +14274,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13365:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< geneticCode_type > r ( +BioXSD-1.1_xsd.cxx:12981:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< correspondance_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -14366,7 +14284,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13382:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:12998:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -14376,9 +14294,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13393:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< phase_type > r ( - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:13007:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< point_type > r ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -14386,7 +14304,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13410:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:13023:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -14396,8 +14314,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13421:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< reversedTranslationDirection_type > r ( +BioXSD-1.1_xsd.cxx:13034:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< insertion_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -14406,24 +14324,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from _write_bioxsd.cpp:22: -../lib/freecontact.h:69:54: warning: ignoring attributes on template argument 'freecontact::__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes] - class LIBFREEC_API ali_t : public std::vector<__m128i> - ^ -In file included from _write_bioxsd.cpp:22: -../lib/freecontact.h:113:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - ali_t& push(const std::vector& __al) throw (alilen_error); - ^~~~~ -../lib/freecontact.h:116:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - inline ali_t& push(const std::string& __l) throw (alilen_error) - ^~~~~ -In file included from _write_bioxsd.cpp:22: -../lib/freecontact.h: In constructor 'freecontact::ali_t::ali_t(uint16_t)': -../lib/freecontact.h:80:79: warning: ignoring attributes on template argument 'freecontact::__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes] - ali_t( const uint16_t __alilen = 0 ) : std::vector<__m128i>(), seqcnt(0), alilen(__alilen), alilen16(( alilen-1 )/16 + 1), alilenpad( 16 * alilen16 ) - ^ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::SequenceReference::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:14184:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:13051:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -14433,9 +14334,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:14195:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< subsequencePosition_type > r ( - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:13060:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< segment_type > r ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -14443,7 +14344,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:14212:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:13076:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -14453,8 +14354,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:14223:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< supersequence_type > r ( +BioXSD-1.1_xsd.cxx:13087:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< explicitSequenceReference_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -14463,7 +14364,22 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:14240:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +In file included from _write_bioxsd.cpp:22: +../lib/freecontact.h: At global scope: +../lib/freecontact.h:185:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error); + ^~~~~ +../lib/freecontact.h:219:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error); + ^~~~~ +../lib/freecontact.h:227:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error); + ^~~~~ +../lib/freecontact.h:234:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error) + ^~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::GeneticCode::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:13231:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -14473,8 +14389,8 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:14251:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< supersequenceName_type > r ( +BioXSD-1.1_xsd.cxx:13242:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< reference_type > r ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, @@ -14483,22 +14399,18 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from _write_bioxsd.cpp:22: -../lib/freecontact.h: At global scope: -../lib/freecontact.h:185:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error); - ^~~~~ -../lib/freecontact.h:219:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error); - ^~~~~ -../lib/freecontact.h:227:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error); - ^~~~~ -../lib/freecontact.h:234:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error) - ^~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::Method::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:14410:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:13260:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< codon_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::TranslationData::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:13354:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -14508,9 +14420,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:14419:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< categoryConcept_type > r ( - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:13365:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< geneticCode_type > r ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -14518,7 +14430,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:14435:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] +BioXSD-1.1_xsd.cxx:13382:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, @@ -14528,9 +14440,9 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -BioXSD-1.1_xsd.cxx:14444:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ::std::auto_ptr< citation_type > r ( - ^~~~~~~~ +BioXSD-1.1_xsd.cxx:13393:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< phase_type > r ( + ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, @@ -14559,6 +14471,26 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx:13410:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:13421:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< reversedTranslationDirection_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ _write_bioxsd.cpp: In function 'void _write_bioxsd(const freecontact::ali_t&, const resn_mapper_t&, const std::map, std::vector >&, bool)': _write_bioxsd.cpp:53:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr seqSeg_p(new BioXSD::SequenceSegment()); @@ -14800,6 +14732,67 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::SequenceReference::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:14184:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:14195:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< subsequencePosition_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:14212:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:14223:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< supersequence_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:14240:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:14251:20: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< supersequenceName_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ _write_bioxsd.cpp:165:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr occ_p(new BioXSD::occurrence()); ^~~~~~~~ @@ -14820,6 +14813,47 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::Method::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:14410:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:14419:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< categoryConcept_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:14435:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +BioXSD-1.1_xsd.cxx:14444:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ::std::auto_ptr< citation_type > r ( + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66, + from BioXSD-1.1_xsd.cxx:41: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ _write_bioxsd.cpp: At global scope: _write_bioxsd.cpp:199:1: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr _get_bxScore( const fc::contact_t& __ct, const std::string& __scid ) @@ -14846,6 +14880,32 @@ ../lib/freecontact.h:69:54: warning: ignoring attributes on template argument 'freecontact::__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes] class LIBFREEC_API ali_t : public std::vector<__m128i> ^ +In file included from freecontact.cpp:25: +../lib/freecontact.h:113:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + ali_t& push(const std::vector& __al) throw (alilen_error); + ^~~~~ +../lib/freecontact.h:116:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + inline ali_t& push(const std::string& __l) throw (alilen_error) + ^~~~~ +In file included from freecontact.cpp:25: +../lib/freecontact.h: In constructor 'freecontact::ali_t::ali_t(uint16_t)': +../lib/freecontact.h:80:79: warning: ignoring attributes on template argument 'freecontact::__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes] + ali_t( const uint16_t __alilen = 0 ) : std::vector<__m128i>(), seqcnt(0), alilen(__alilen), alilen16(( alilen-1 )/16 + 1), alilenpad( 16 * alilen16 ) + ^ +In file included from freecontact.cpp:25: +../lib/freecontact.h: At global scope: +../lib/freecontact.h:185:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error); + ^~~~~ +../lib/freecontact.h:219:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error); + ^~~~~ +../lib/freecontact.h:227:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error); + ^~~~~ +../lib/freecontact.h:234:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] + ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error) + ^~~~~ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::association::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:17632:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( @@ -14967,18 +15027,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact.cpp:25: -../lib/freecontact.h:113:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - ali_t& push(const std::vector& __al) throw (alilen_error); - ^~~~~ -../lib/freecontact.h:116:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - inline ali_t& push(const std::string& __l) throw (alilen_error) - ^~~~~ -In file included from freecontact.cpp:25: -../lib/freecontact.h: In constructor 'freecontact::ali_t::ali_t(uint16_t)': -../lib/freecontact.h:80:79: warning: ignoring attributes on template argument 'freecontact::__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes] - ali_t( const uint16_t __alilen = 0 ) : std::vector<__m128i>(), seqcnt(0), alilen(__alilen), alilen16(( alilen-1 )/16 + 1), alilenpad( 16 * alilen16 ) - ^ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::variation::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:17927:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( @@ -15010,6 +15058,39 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ +freecontact.cpp: In function 'int main(int, char**)': +freecontact.cpp:165:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + auto_ptr ali_ifs_p; + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/boost/container_hash/extensions.hpp:36, + from /usr/include/boost/container_hash/hash.hpp:760, + from /usr/include/boost/type_index/stl_type_index.hpp:43, + from /usr/include/boost/type_index.hpp:29, + from /usr/include/boost/any.hpp:20, + from /usr/include/boost/program_options/value_semantic.hpp:12, + from /usr/include/boost/program_options/options_description.hpp:13, + from /usr/include/boost/program_options.hpp:15, + from freecontact.cpp:17: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ +freecontact.cpp:169:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] + ali_ifs_p = auto_ptr(new std::ifstream(vm["ali"].as().c_str())); + ^~~~~~~~ +In file included from /usr/include/c++/8/memory:80, + from /usr/include/boost/container_hash/extensions.hpp:36, + from /usr/include/boost/container_hash/hash.hpp:760, + from /usr/include/boost/type_index/stl_type_index.hpp:43, + from /usr/include/boost/type_index.hpp:29, + from /usr/include/boost/any.hpp:20, + from /usr/include/boost/program_options/value_semantic.hpp:12, + from /usr/include/boost/program_options/options_description.hpp:13, + from /usr/include/boost/program_options.hpp:15, + from freecontact.cpp:17: +/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here + template class auto_ptr; + ^~~~~~~~ BioXSD-1.1_xsd.cxx:17964:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< variant_type > r ( ^~~~~~~~ @@ -15080,20 +15161,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from freecontact.cpp:25: -../lib/freecontact.h: At global scope: -../lib/freecontact.h:185:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error); - ^~~~~ -../lib/freecontact.h:219:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error); - ^~~~~ -../lib/freecontact.h:227:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error); - ^~~~~ -../lib/freecontact.h:234:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] - ) throw (alilen_error, icme_timeout_error, std::range_error, std::runtime_error) - ^~~~~ BioXSD-1.1_xsd.cxx: At global scope: BioXSD-1.1_xsd.cxx:18102:21: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] alignment (::std::auto_ptr< alignedSequence_type > alignedSequence) @@ -15501,10 +15568,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact.cpp: In function 'int main(int, char**)': -freecontact.cpp:165:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - auto_ptr ali_ifs_p; - ^~~~~~~~ BioXSD-1.1_xsd.cxx:19252:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ @@ -15515,19 +15578,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/boost/container_hash/extensions.hpp:36, - from /usr/include/boost/container_hash/hash.hpp:760, - from /usr/include/boost/type_index/stl_type_index.hpp:43, - from /usr/include/boost/type_index.hpp:29, - from /usr/include/boost/any.hpp:20, - from /usr/include/boost/program_options/value_semantic.hpp:12, - from /usr/include/boost/program_options/options_description.hpp:13, - from /usr/include/boost/program_options.hpp:15, - from freecontact.cpp:17: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ BioXSD-1.1_xsd.cxx:19261:18: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< sequenceScore_type > r ( ^~~~~~~~ @@ -15538,22 +15588,6 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -freecontact.cpp:169:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] - ali_ifs_p = auto_ptr(new std::ifstream(vm["ali"].as().c_str())); - ^~~~~~~~ -In file included from /usr/include/c++/8/memory:80, - from /usr/include/boost/container_hash/extensions.hpp:36, - from /usr/include/boost/container_hash/hash.hpp:760, - from /usr/include/boost/type_index/stl_type_index.hpp:43, - from /usr/include/boost/type_index.hpp:29, - from /usr/include/boost/any.hpp:20, - from /usr/include/boost/program_options/value_semantic.hpp:12, - from /usr/include/boost/program_options/options_description.hpp:13, - from /usr/include/boost/program_options.hpp:15, - from freecontact.cpp:17: -/usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here - template class auto_ptr; - ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::condensedReferences::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:19360:16: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( @@ -15951,7 +15985,7 @@ /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=link g++ -fopenmp -g -O2 -ffile-prefix-map=/build/freecontact-1.0.21=. -fstack-protector-strong -Wformat -Werror=format-security -L/usr/lib -Wl,-z,relro -Wl,-z,now -o freecontact freecontact-freecontact.o freecontact-_write_bioxsd.o freecontact-freecontact_input_xsd.o freecontact-freecontact_output_xsd.o freecontact-BioXSD-1.1_xsd.o -lboost_program_options -lxerces-c ../lib/libfreecontact.la +/bin/sh ../libtool --tag=CXX --mode=link g++ -fopenmp -g -O2 -ffile-prefix-map=/build/freecontact-1.0.21=. -fstack-protector-strong -Wformat -Werror=format-security -L/usr/lib -Wl,-z,relro -Wl,-z,now -o freecontact freecontact-freecontact.o freecontact-_write_bioxsd.o freecontact-freecontact_input_xsd.o freecontact-freecontact_output_xsd.o freecontact-BioXSD-1.1_xsd.o -lboost_program_options -lxerces-c ../lib/libfreecontact.la libtool: link: g++ -fopenmp -g -O2 -ffile-prefix-map=/build/freecontact-1.0.21=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/freecontact freecontact-freecontact.o freecontact-_write_bioxsd.o freecontact-freecontact_input_xsd.o freecontact-freecontact_output_xsd.o freecontact-BioXSD-1.1_xsd.o -L/usr/lib -lboost_program_options -lxerces-c ../lib/.libs/libfreecontact.so -pthread -fopenmp make[2]: Leaving directory '/build/freecontact-1.0.21/src' make[2]: Entering directory '/build/freecontact-1.0.21' @@ -16004,7 +16038,7 @@ make[2]: Entering directory '/build/freecontact-1.0.21/lib' make[3]: Entering directory '/build/freecontact-1.0.21/lib' /bin/mkdir -p '/build/freecontact-1.0.21/debian/tmp/usr/lib/aarch64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libfreecontact.la '/build/freecontact-1.0.21/debian/tmp/usr/lib/aarch64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libfreecontact.la '/build/freecontact-1.0.21/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libfreecontact.so.0.0.0 /build/freecontact-1.0.21/debian/tmp/usr/lib/aarch64-linux-gnu/libfreecontact.so.0.0.0 libtool: install: (cd /build/freecontact-1.0.21/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libfreecontact.so.0.0.0 libfreecontact.so.0 || { rm -f libfreecontact.so.0 && ln -s libfreecontact.so.0.0.0 libfreecontact.so.0; }; }) libtool: install: (cd /build/freecontact-1.0.21/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libfreecontact.so.0.0.0 libfreecontact.so || { rm -f libfreecontact.so && ln -s libfreecontact.so.0.0.0 libfreecontact.so; }; }) @@ -16021,7 +16055,7 @@ make[2]: Entering directory '/build/freecontact-1.0.21/src' make[3]: Entering directory '/build/freecontact-1.0.21/src' /bin/mkdir -p '/build/freecontact-1.0.21/debian/tmp/usr/bin' - /bin/bash ../libtool --mode=install /usr/bin/install -c freecontact '/build/freecontact-1.0.21/debian/tmp/usr/bin' + /bin/sh ../libtool --mode=install /usr/bin/install -c freecontact '/build/freecontact-1.0.21/debian/tmp/usr/bin' libtool: warning: '../lib/libfreecontact.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/freecontact /build/freecontact-1.0.21/debian/tmp/usr/bin/freecontact /bin/mkdir -p '/build/freecontact-1.0.21/debian/tmp/usr/share/doc/freecontact/examples' @@ -16106,24 +16140,26 @@ make[1]: Leaving directory '/build/freecontact-1.0.21' dh_md5sums dh_builddeb -dpkg-deb: building package 'libfreecontact-doc' in '../libfreecontact-doc_1.0.21-7_all.deb'. -dpkg-deb: building package 'libfreecontact0v5-dbgsym' in '../libfreecontact0v5-dbgsym_1.0.21-7_arm64.deb'. -dpkg-deb: building package 'freecontact-dbgsym' in '../freecontact-dbgsym_1.0.21-7_arm64.deb'. dpkg-deb: building package 'libfreecontact0v5' in '../libfreecontact0v5_1.0.21-7_arm64.deb'. -dpkg-deb: building package 'libfreecontact-dev' in '../libfreecontact-dev_1.0.21-7_arm64.deb'. +dpkg-deb: building package 'freecontact-dbgsym' in '../freecontact-dbgsym_1.0.21-7_arm64.deb'. dpkg-deb: building package 'freecontact' in '../freecontact_1.0.21-7_arm64.deb'. +dpkg-deb: building package 'libfreecontact0v5-dbgsym' in '../libfreecontact0v5-dbgsym_1.0.21-7_arm64.deb'. +dpkg-deb: building package 'libfreecontact-doc' in '../libfreecontact-doc_1.0.21-7_all.deb'. +dpkg-deb: building package 'libfreecontact-dev' in '../libfreecontact-dev_1.0.21-7_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../freecontact_1.0.21-7_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/7982/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/7982/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/25314 and its subdirectories -I: Current time: Thu Aug 6 12:38:56 -12 2020 -I: pbuilder-time-stamp: 1596760736 +I: removing directory /srv/workspace/pbuilder/7982 and its subdirectories +I: Current time: Thu Sep 9 21:11:16 +14 2021 +I: pbuilder-time-stamp: 1631171476