Diff of the two buildlogs: -- --- b1/build.log 2020-07-25 04:55:56.750512904 +0000 +++ b2/build.log 2020-07-25 05:16:58.459409620 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Aug 26 23:08:41 -12 2021 -I: pbuilder-time-stamp: 1630062521 +I: Current time: Sat Jul 25 18:56:41 +14 2020 +I: pbuilder-time-stamp: 1595653001 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/var/lib/jenkins/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Thu Aug 8 05:11:47 2013 -12 +gpgv: Signature made Fri Aug 9 07:11:47 2013 +14 gpgv: using DSA key 9B46F1FB088F6B8C gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./apbs_1.4-1.dsc @@ -29,136 +29,170 @@ dpkg-source: info: applying debian_make.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3806/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/12433/tmp/hooks/D01_modify_environment starting +debug: Running on codethink-sled14-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/12433/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/12433/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.0.3(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' - DISTRIBUTION='' - HOME='/var/lib/jenkins' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/var/lib/jenkins + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3806' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=12433 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.8DnoUtxvSp/pbuilderrc_kAXo --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.8DnoUtxvSp/b1 --logfile b1/build.log apbs_1.4-1.dsc' - SUDO_GID='117' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - USERNAME='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.16:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.8DnoUtxvSp/pbuilderrc_Q3xz --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.8DnoUtxvSp/b2 --logfile b2/build.log apbs_1.4-1.dsc' + SUDO_GID=117 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + USERNAME=root + _='I: set' + http_proxy=http://192.168.101.16:3128 I: uname -a - Linux codethink-sled13-arm64 4.4.0-186-generic #216-Ubuntu SMP Wed Jul 1 05:35:21 UTC 2020 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.4.0-186-generic #216-Ubuntu SMP Wed Jul 1 05:35:21 UTC 2020 aarch64 GNU/Linux I: ls -l /bin total 4928 - -rwxr-xr-x 1 root root 1216928 Apr 17 2019 bash - -rwxr-xr-x 3 root root 34808 Jul 10 2019 bunzip2 - -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzcat - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep - -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzip2 - -rwxr-xr-x 1 root root 14264 Jul 10 2019 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore - -rwxr-xr-x 1 root root 35576 Feb 28 2019 cat - -rwxr-xr-x 1 root root 60256 Feb 28 2019 chgrp - -rwxr-xr-x 1 root root 56096 Feb 28 2019 chmod - -rwxr-xr-x 1 root root 64368 Feb 28 2019 chown - -rwxr-xr-x 1 root root 134632 Feb 28 2019 cp - -rwxr-xr-x 1 root root 129536 Jan 17 2019 dash - -rwxr-xr-x 1 root root 97136 Feb 28 2019 date - -rwxr-xr-x 1 root root 76736 Feb 28 2019 dd - -rwxr-xr-x 1 root root 93752 Feb 28 2019 df - -rwxr-xr-x 1 root root 138848 Feb 28 2019 dir - -rwxr-xr-x 1 root root 75984 Jan 9 2019 dmesg - lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname - -rwxr-xr-x 1 root root 31368 Feb 28 2019 echo - -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep - -rwxr-xr-x 1 root root 27256 Feb 28 2019 false - -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep - -rwxr-xr-x 1 root root 68792 Jan 9 2019 findmnt - -rwsr-xr-x 1 root root 34824 Apr 22 2020 fusermount - -rwxr-xr-x 1 root root 174304 Jan 7 2019 grep - -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip - -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe - -rwxr-xr-x 1 root root 89656 Jan 5 2019 gzip - -rwxr-xr-x 1 root root 18440 Sep 26 2018 hostname - -rwxr-xr-x 1 root root 64472 Feb 28 2019 ln - -rwxr-xr-x 1 root root 52544 Jul 26 2018 login - -rwxr-xr-x 1 root root 138848 Feb 28 2019 ls - -rwxr-xr-x 1 root root 108552 Jan 9 2019 lsblk - -rwxr-xr-x 1 root root 76840 Feb 28 2019 mkdir - -rwxr-xr-x 1 root root 64480 Feb 28 2019 mknod - -rwxr-xr-x 1 root root 39736 Feb 28 2019 mktemp - -rwxr-xr-x 1 root root 38840 Jan 9 2019 more - -rwsr-xr-x 1 root root 47112 Jan 9 2019 mount - -rwxr-xr-x 1 root root 14344 Jan 9 2019 mountpoint - -rwxr-xr-x 1 root root 138736 Feb 28 2019 mv - lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 35560 Feb 28 2019 pwd - lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash - -rwxr-xr-x 1 root root 43712 Feb 28 2019 readlink - -rwxr-xr-x 1 root root 68440 Feb 28 2019 rm - -rwxr-xr-x 1 root root 39624 Feb 28 2019 rmdir - -rwxr-xr-x 1 root root 19144 Jan 21 2019 run-parts - -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Aug 26 02:49 sh -> dash - -rwxr-xr-x 1 root root 31384 Feb 28 2019 sleep - -rwxr-xr-x 1 root root 72480 Feb 28 2019 stty - -rwsr-xr-x 1 root root 59424 Jan 9 2019 su - -rwxr-xr-x 1 root root 31416 Feb 28 2019 sync - -rwxr-xr-x 1 root root 449416 Apr 23 2019 tar - -rwxr-xr-x 1 root root 10560 Jan 21 2019 tempfile - -rwxr-xr-x 1 root root 88968 Feb 28 2019 touch - -rwxr-xr-x 1 root root 27256 Feb 28 2019 true - -rwxr-xr-x 1 root root 14264 Apr 22 2020 ulockmgr_server - -rwsr-xr-x 1 root root 30728 Jan 9 2019 umount - -rwxr-xr-x 1 root root 31384 Feb 28 2019 uname - -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress - -rwxr-xr-x 1 root root 138848 Feb 28 2019 vdir - -rwxr-xr-x 1 root root 34824 Jan 9 2019 wdctl - -rwxr-xr-x 1 root root 946 Jan 21 2019 which - lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat - -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp - -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff - -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep - -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep - -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce - -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep - -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless - -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore - -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew -I: user script /srv/workspace/pbuilder/3806/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1216928 Apr 18 2019 bash + -rwxr-xr-x 3 root root 34808 Jul 11 2019 bunzip2 + -rwxr-xr-x 3 root root 34808 Jul 11 2019 bzcat + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep + -rwxr-xr-x 3 root root 34808 Jul 11 2019 bzip2 + -rwxr-xr-x 1 root root 14264 Jul 11 2019 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore + -rwxr-xr-x 1 root root 35576 Mar 1 2019 cat + -rwxr-xr-x 1 root root 60256 Mar 1 2019 chgrp + -rwxr-xr-x 1 root root 56096 Mar 1 2019 chmod + -rwxr-xr-x 1 root root 64368 Mar 1 2019 chown + -rwxr-xr-x 1 root root 134632 Mar 1 2019 cp + -rwxr-xr-x 1 root root 129536 Jan 18 2019 dash + -rwxr-xr-x 1 root root 97136 Mar 1 2019 date + -rwxr-xr-x 1 root root 76736 Mar 1 2019 dd + -rwxr-xr-x 1 root root 93752 Mar 1 2019 df + -rwxr-xr-x 1 root root 138848 Mar 1 2019 dir + -rwxr-xr-x 1 root root 75984 Jan 10 2019 dmesg + lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname + -rwxr-xr-x 1 root root 31368 Mar 1 2019 echo + -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep + -rwxr-xr-x 1 root root 27256 Mar 1 2019 false + -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep + -rwxr-xr-x 1 root root 68792 Jan 10 2019 findmnt + -rwsr-xr-x 1 root root 34824 Apr 23 09:38 fusermount + -rwxr-xr-x 1 root root 174304 Jan 8 2019 grep + -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip + -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe + -rwxr-xr-x 1 root root 89656 Jan 6 2019 gzip + -rwxr-xr-x 1 root root 18440 Sep 27 2018 hostname + -rwxr-xr-x 1 root root 64472 Mar 1 2019 ln + -rwxr-xr-x 1 root root 52544 Jul 27 2018 login + -rwxr-xr-x 1 root root 138848 Mar 1 2019 ls + -rwxr-xr-x 1 root root 108552 Jan 10 2019 lsblk + -rwxr-xr-x 1 root root 76840 Mar 1 2019 mkdir + -rwxr-xr-x 1 root root 64480 Mar 1 2019 mknod + -rwxr-xr-x 1 root root 39736 Mar 1 2019 mktemp + -rwxr-xr-x 1 root root 38840 Jan 10 2019 more + -rwsr-xr-x 1 root root 47112 Jan 10 2019 mount + -rwxr-xr-x 1 root root 14344 Jan 10 2019 mountpoint + -rwxr-xr-x 1 root root 138736 Mar 1 2019 mv + lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 35560 Mar 1 2019 pwd + lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash + -rwxr-xr-x 1 root root 43712 Mar 1 2019 readlink + -rwxr-xr-x 1 root root 68440 Mar 1 2019 rm + -rwxr-xr-x 1 root root 39624 Mar 1 2019 rmdir + -rwxr-xr-x 1 root root 19144 Jan 22 2019 run-parts + -rwxr-xr-x 1 root root 114016 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Jul 25 18:56 sh -> bash + lrwxrwxrwx 1 root root 4 Jul 24 22:27 sh.distrib -> dash + -rwxr-xr-x 1 root root 31384 Mar 1 2019 sleep + -rwxr-xr-x 1 root root 72480 Mar 1 2019 stty + -rwsr-xr-x 1 root root 59424 Jan 10 2019 su + -rwxr-xr-x 1 root root 31416 Mar 1 2019 sync + -rwxr-xr-x 1 root root 449416 Apr 24 2019 tar + -rwxr-xr-x 1 root root 10560 Jan 22 2019 tempfile + -rwxr-xr-x 1 root root 88968 Mar 1 2019 touch + -rwxr-xr-x 1 root root 27256 Mar 1 2019 true + -rwxr-xr-x 1 root root 14264 Apr 23 09:38 ulockmgr_server + -rwsr-xr-x 1 root root 30728 Jan 10 2019 umount + -rwxr-xr-x 1 root root 31384 Mar 1 2019 uname + -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress + -rwxr-xr-x 1 root root 138848 Mar 1 2019 vdir + -rwxr-xr-x 1 root root 34824 Jan 10 2019 wdctl + -rwxr-xr-x 1 root root 946 Jan 22 2019 which + lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat + -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp + -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff + -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep + -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep + -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce + -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep + -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless + -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore + -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew +I: user script /srv/workspace/pbuilder/12433/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -317,7 +351,7 @@ Get: 107 http://deb.debian.org/debian buster/main arm64 python-pkg-resources all 40.8.0-1 [182 kB] Get: 108 http://deb.debian.org/debian buster/main arm64 python-setuptools all 40.8.0-1 [382 kB] Get: 109 http://deb.debian.org/debian buster/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-1 [210 kB] -Fetched 72.4 MB in 3s (21.2 MB/s) +Fetched 72.4 MB in 4s (19.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19168 files and directories currently installed.) @@ -782,7 +816,7 @@ fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/apbs-1.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/apbs-1.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package apbs dpkg-buildpackage: info: source version 1.4-1 dpkg-buildpackage: info: source distribution unstable @@ -930,80 +964,80 @@ Scanning dependencies of target apbs_generic make[3]: Leaving directory '/build/apbs-1.4/obj-aarch64-linux-gnu' make -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/build -make[3]: Entering directory '/build/apbs-1.4/obj-aarch64-linux-gnu' Scanning dependencies of target apbs_pmgc make[3]: Leaving directory '/build/apbs-1.4/obj-aarch64-linux-gnu' make -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/build make[3]: Entering directory '/build/apbs-1.4/obj-aarch64-linux-gnu' -[ 6%] Building C object src/generic/CMakeFiles/apbs_generic.dir/apolparm.c.o +make[3]: Entering directory '/build/apbs-1.4/obj-aarch64-linux-gnu' +[ 2%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o +[ 4%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o [ 6%] Building C object src/generic/CMakeFiles/apbs_generic.dir/nosh.c.o -[ 6%] Building C object src/generic/CMakeFiles/apbs_generic.dir/femparm.c.o -[ 9%] Building C object src/generic/CMakeFiles/apbs_generic.dir/mgparm.c.o -[ 13%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbeparm.c.o -[ 13%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vacc.c.o cd /build/apbs-1.4/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_generic.dir/nosh.c.o -c /build/apbs-1.4/src/generic/nosh.c +[ 9%] Building C object src/generic/CMakeFiles/apbs_generic.dir/mgparm.c.o cd /build/apbs-1.4/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_generic.dir/mgparm.c.o -c /build/apbs-1.4/src/generic/mgparm.c +cd /build/apbs-1.4/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_pmgc.dir/buildAd.c.o -c /build/apbs-1.4/src/pmgc/buildAd.c +cd /build/apbs-1.4/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_pmgc.dir/buildBd.c.o -c /build/apbs-1.4/src/pmgc/buildBd.c +[ 11%] Building C object src/generic/CMakeFiles/apbs_generic.dir/femparm.c.o cd /build/apbs-1.4/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_generic.dir/femparm.c.o -c /build/apbs-1.4/src/generic/femparm.c +[ 13%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildGd.c.o +[ 16%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildPd.c.o +cd /build/apbs-1.4/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_pmgc.dir/buildGd.c.o -c /build/apbs-1.4/src/pmgc/buildGd.c +cd /build/apbs-1.4/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_pmgc.dir/buildPd.c.o -c /build/apbs-1.4/src/pmgc/buildPd.c +[ 18%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbeparm.c.o cd /build/apbs-1.4/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_generic.dir/pbeparm.c.o -c /build/apbs-1.4/src/generic/pbeparm.c +[ 20%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o +cd /build/apbs-1.4/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_pmgc.dir/cgd.c.o -c /build/apbs-1.4/src/pmgc/cgd.c +[ 23%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o +cd /build/apbs-1.4/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_pmgc.dir/gsd.c.o -c /build/apbs-1.4/src/pmgc/gsd.c +[ 25%] Building C object src/generic/CMakeFiles/apbs_generic.dir/apolparm.c.o cd /build/apbs-1.4/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_generic.dir/apolparm.c.o -c /build/apbs-1.4/src/generic/apolparm.c +[ 27%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o +cd /build/apbs-1.4/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_pmgc.dir/matvecd.c.o -c /build/apbs-1.4/src/pmgc/matvecd.c +[ 30%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vacc.c.o cd /build/apbs-1.4/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_generic.dir/vacc.c.o -c /build/apbs-1.4/src/generic/vacc.c -[ 16%] Building C object src/generic/CMakeFiles/apbs_generic.dir/valist.c.o +[ 32%] Building C object src/generic/CMakeFiles/apbs_generic.dir/valist.c.o cd /build/apbs-1.4/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_generic.dir/valist.c.o -c /build/apbs-1.4/src/generic/valist.c -[ 18%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o -cd /build/apbs-1.4/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_pmgc.dir/buildAd.c.o -c /build/apbs-1.4/src/pmgc/buildAd.c -[ 20%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o -cd /build/apbs-1.4/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_pmgc.dir/buildBd.c.o -c /build/apbs-1.4/src/pmgc/buildBd.c -[ 23%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vatom.c.o +[ 34%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vatom.c.o cd /build/apbs-1.4/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_generic.dir/vatom.c.o -c 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CMakeFiles/apbs_generic.dir/vpbe.c.o -c /build/apbs-1.4/src/generic/vpbe.c -[ 27%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vcap.c.o +[ 41%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o +cd /build/apbs-1.4/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o -c /build/apbs-1.4/src/pmgc/mgdrvd.c +[ 44%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vcap.c.o cd /build/apbs-1.4/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_pmgc.dir/mgsubd.c.o -c /build/apbs-1.4/src/pmgc/mgsubd.c -[ 58%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mikpckd.c.o +[ 53%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mikpckd.c.o cd /build/apbs-1.4/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_pmgc.dir/mikpckd.c.o -c /build/apbs-1.4/src/pmgc/mikpckd.c +[ 55%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vparam.c.o +cd /build/apbs-1.4/obj-aarch64-linux-gnu/src/generic && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. 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../../../lib/libapbs_generic.a CMakeFiles/apbs_generic.dir/nosh.c.o CMakeFiles/apbs_generic.dir/mgparm.c.o CMakeFiles/apbs_generic.dir/femparm.c.o CMakeFiles/apbs_generic.dir/pbeparm.c.o CMakeFiles/apbs_generic.dir/apolparm.c.o CMakeFiles/apbs_generic.dir/vacc.c.o CMakeFiles/apbs_generic.dir/valist.c.o CMakeFiles/apbs_generic.dir/vatom.c.o CMakeFiles/apbs_generic.dir/vpbe.c.o CMakeFiles/apbs_generic.dir/vcap.c.o CMakeFiles/apbs_generic.dir/vclist.c.o CMakeFiles/apbs_generic.dir/vstring.c.o CMakeFiles/apbs_generic.dir/vparam.c.o CMakeFiles/apbs_generic.dir/vgreen.c.o -/usr/bin/ranlib ../../../lib/libapbs_generic.a -make[3]: Leaving directory '/build/apbs-1.4/obj-aarch64-linux-gnu' -[ 65%] Built target apbs_generic -[ 67%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/newtond.c.o +[ 65%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/newtond.c.o cd /build/apbs-1.4/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi 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/build/apbs-1.4/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_pmgc.dir/powerd.c.o -c /build/apbs-1.4/src/pmgc/powerd.c +[ 72%] Linking C static library ../../../lib/libapbs_generic.a +cd /build/apbs-1.4/obj-aarch64-linux-gnu/src/generic && /usr/bin/cmake -P CMakeFiles/apbs_generic.dir/cmake_clean_target.cmake +cd /build/apbs-1.4/obj-aarch64-linux-gnu/src/generic && /usr/bin/cmake -E cmake_link_script CMakeFiles/apbs_generic.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../../lib/libapbs_generic.a CMakeFiles/apbs_generic.dir/nosh.c.o CMakeFiles/apbs_generic.dir/mgparm.c.o CMakeFiles/apbs_generic.dir/femparm.c.o CMakeFiles/apbs_generic.dir/pbeparm.c.o CMakeFiles/apbs_generic.dir/apolparm.c.o CMakeFiles/apbs_generic.dir/vacc.c.o CMakeFiles/apbs_generic.dir/valist.c.o CMakeFiles/apbs_generic.dir/vatom.c.o CMakeFiles/apbs_generic.dir/vpbe.c.o CMakeFiles/apbs_generic.dir/vcap.c.o CMakeFiles/apbs_generic.dir/vclist.c.o CMakeFiles/apbs_generic.dir/vstring.c.o CMakeFiles/apbs_generic.dir/vparam.c.o CMakeFiles/apbs_generic.dir/vgreen.c.o [ 74%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/smoothd.c.o cd /build/apbs-1.4/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_pmgc.dir/smoothd.c.o -c /build/apbs-1.4/src/pmgc/smoothd.c +/usr/bin/ranlib ../../../lib/libapbs_generic.a +make[3]: Leaving directory '/build/apbs-1.4/obj-aarch64-linux-gnu' +[ 74%] Built target apbs_generic [ 76%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgfasd.c.o cd /build/apbs-1.4/obj-aarch64-linux-gnu/src/pmgc && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_pmgc.dir/mgfasd.c.o -c /build/apbs-1.4/src/pmgc/mgfasd.c [ 79%] Linking C static library ../../../lib/libapbs_pmgc.a @@ -1020,15 +1054,15 @@ make[3]: Leaving directory '/build/apbs-1.4/obj-aarch64-linux-gnu' make -f src/mg/CMakeFiles/apbs_mg.dir/build.make src/mg/CMakeFiles/apbs_mg.dir/build make[3]: Entering directory '/build/apbs-1.4/obj-aarch64-linux-gnu' -[ 81%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vopot.c.o -[ 83%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vmgrid.c.o -cd /build/apbs-1.4/obj-aarch64-linux-gnu/src/mg && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_mg.dir/vopot.c.o -c /build/apbs-1.4/src/mg/vopot.c +[ 81%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vmgrid.c.o cd /build/apbs-1.4/obj-aarch64-linux-gnu/src/mg && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_mg.dir/vmgrid.c.o -c /build/apbs-1.4/src/mg/vmgrid.c -[ 86%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vgrid.c.o -[ 88%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmgp.c.o -[ 90%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmg.c.o +[ 83%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vgrid.c.o cd /build/apbs-1.4/obj-aarch64-linux-gnu/src/mg && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_mg.dir/vgrid.c.o -c /build/apbs-1.4/src/mg/vgrid.c +[ 86%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmgp.c.o cd /build/apbs-1.4/obj-aarch64-linux-gnu/src/mg && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_mg.dir/vpmgp.c.o -c /build/apbs-1.4/src/mg/vpmgp.c +[ 88%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vopot.c.o +cd /build/apbs-1.4/obj-aarch64-linux-gnu/src/mg && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_mg.dir/vopot.c.o -c /build/apbs-1.4/src/mg/vopot.c +[ 90%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmg.c.o cd /build/apbs-1.4/obj-aarch64-linux-gnu/src/mg && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs_mg.dir/vpmg.c.o -c /build/apbs-1.4/src/mg/vpmg.c [ 93%] Linking C static library ../../../lib/libapbs_mg.a cd /build/apbs-1.4/obj-aarch64-linux-gnu/src/mg && /usr/bin/cmake -P CMakeFiles/apbs_mg.dir/cmake_clean_target.cmake @@ -1044,9 +1078,9 @@ make[3]: Leaving directory '/build/apbs-1.4/obj-aarch64-linux-gnu' make -f src/CMakeFiles/apbs.dir/build.make src/CMakeFiles/apbs.dir/build make[3]: Entering directory '/build/apbs-1.4/obj-aarch64-linux-gnu' -[ 97%] Building C object src/CMakeFiles/apbs.dir/main.c.o -[ 97%] Building C object src/CMakeFiles/apbs.dir/routines.c.o +[ 95%] Building C object src/CMakeFiles/apbs.dir/main.c.o cd /build/apbs-1.4/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs.dir/main.c.o -c /build/apbs-1.4/src/main.c +[ 97%] Building C object src/CMakeFiles/apbs.dir/routines.c.o cd /build/apbs-1.4/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/build/apbs-1.4/src -g -O2 -ffile-prefix-map=/build/apbs-1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/apbs.dir/routines.c.o -c /build/apbs-1.4/src/routines.c /build/apbs-1.4/src/main.c: In function 'main': /build/apbs-1.4/src/main.c:277:64: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -1408,7 +1442,7 @@ Checking forces for input file apbs-forces.in Checking Polar Forces Checking Apolar Forces -Elapsed time: 0.003920 seconds +Elapsed time: 0.008598 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-mol-auto.in @@ -1417,14 +1451,14 @@ *** FAILED *** APBS returned -2.297736000000e+02 Expected result is -2.297735000000e+02 (0.005% error) -Elapsed time: 5.293082 seconds +Elapsed time: 18.457849 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-smol-auto.in Testing computed result -2.290124252387E+02 against expected result -2.290124E+02 *** PASSED *** -Elapsed time: 4.377443 seconds +Elapsed time: 14.934074 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-mol-parallel.in @@ -1445,7 +1479,7 @@ Testing computed result -2.304918486746E+02 against expected result -2.304918E+02 *** PASSED *** -Elapsed time: 20.915108 seconds +Elapsed time: 80.027283 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-smol-parallel.in @@ -1466,9 +1500,9 @@ Testing computed result -2.293871439560E+02 against expected result -2.293871E+02 *** PASSED *** -Elapsed time: 20.662134 seconds +Elapsed time: 77.299815 seconds -------------------------------------------------------------------------------- -Total elapsed time: 51.251687 seconds +Total elapsed time: 190.727619 seconds Test results have been logged -------------------------------------------------------------------------------- Running tests for alkanes section @@ -1497,12 +1531,12 @@ *** PASSED *** Testing computed result 1.192358496286E+01 against expected result 1.192358E+01 *** PASSED *** -Elapsed time: 61.885936 seconds +Elapsed time: 65.633512 seconds -------------------------------------------------------------------------------- -Total elapsed time: 61.885936 seconds +Total elapsed time: 65.633512 seconds Test results have been logged -------------------------------------------------------------------------------- -Running Vio_ctor2: Gethostbyname fail INET sock <> dueto +RunniVio_ctor2: Gethostbyname fail INET sock <> dueto Vio_ctor2: Gethostbyname fail INET sock <> dueto asc_getToken: Error occurred (bailing out). Vio_scanf: Format problem with input. @@ -1715,7 +1749,7 @@ detected on the focusing boundary! Convergence not guaranteed for NPBE/NRPBE calculations! -tests for FKBP section +ng tests for FKBP section -------------------------------------------------------------------------------- Testing input file 1d7h-dmso-mol.in @@ -1723,7 +1757,7 @@ *** FAILED *** APBS returned 1.656346000000e+01 Expected result is 1.500769000000e+01 (77.7885% error) -Elapsed time: 36.918616 seconds +Elapsed time: 70.998817 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file 1d7h-dmso-smol.in @@ -1732,7 +1766,7 @@ *** FAILED *** APBS returned 1.624454000000e+01 Expected result is 1.624455000000e+01 (0.0005% error) -Elapsed time: 36.950161 seconds +Elapsed time: 62.479965 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file 1d7i-dss-mol.in @@ -1741,7 +1775,7 @@ *** FAILED *** APBS returned 1.442500000000e+01 Expected result is 1.442501000000e+01 (0.0005% error) -Elapsed time: 35.872365 seconds +Elapsed time: 68.785347 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file 1d7i-dss-smol.in @@ -1750,9 +1784,9 @@ *** FAILED *** APBS returned 1.545151000000e+01 Expected result is 1.545150000000e+01 (0.0005% error) -Elapsed time: 29.642648 seconds +Elapsed time: 54.760916 seconds -------------------------------------------------------------------------------- -Total elapsed time: 139.383790 seconds +Total elapsed time: 257.025045 seconds Test results have been logged -------------------------------------------------------------------------------- Running tests for hca-bind section @@ -1763,7 +1797,7 @@ *** FAILED *** APBS returned -5.246476000000e+01 Expected result is -5.246468000000e+01 (0.004% error) -Elapsed time: 30.080457 seconds +Elapsed time: 57.994151 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-smol.in @@ -1772,9 +1806,9 @@ *** FAILED *** APBS returned -5.405979000000e+01 Expected result is -5.405978000000e+01 (0.0005% error) -Elapsed time: 27.507181 seconds +Elapsed time: 45.165891 seconds -------------------------------------------------------------------------------- -Total elapsed time: 57.587638 seconds +Total elapsed time: 103.160042 seconds Test results have been logged -------------------------------------------------------------------------------- Running tests for ionize section @@ -1789,7 +1823,7 @@ *** PASSED *** Testing computed result -4.745272838398E+02 against expected result -4.745273E+02 *** PASSED *** -Elapsed time: 8.984653 seconds +Elapsed time: 35.266726 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-smol.in @@ -1802,7 +1836,7 @@ *** PASSED *** Testing computed result -2.959668753288E+02 against expected result -2.959669E+02 *** PASSED *** -Testing computed result -4.721246714829E+02 agVio_ctor2: Gethostbyname fail INET sock <> dueto +Testing computed result -4.721246714829E+Vio_ctor2: Gethostbyname fail INET sock <> dueto Vio_ctor2: Gethostbyname fail INET sock <> dueto asc_getToken: Error occurred (bailing out). Vio_scanf: Format problem with input. @@ -1933,11 +1967,11 @@ Vio_ctor2: Gethostbyname fail INET sock <> dueto asc_getToken: Error occurred (bailing out). Vio_scanf: Format problem with input. -ainst expected result -4.721247E+02 +02 against expected result -4.721247E+02 *** PASSED *** -Elapsed time: 8.396643 seconds +Elapsed time: 33.622356 seconds -------------------------------------------------------------------------------- -Total elapsed time: 17.381296 seconds +Total elapsed time: 68.889082 seconds Test results have been logged -------------------------------------------------------------------------------- Running tests for ion-pmf section @@ -1946,9 +1980,9 @@ Testing computed result -1.125191605614E+03 against expected result -1.125192E+03 *** PASSED *** -Elapsed time: 35.296104 seconds +Elapsed time: 41.800784 seconds -------------------------------------------------------------------------------- -Total elapsed time: 35.296104 seconds +Total elapsed time: 41.800784 seconds Test results have been logged -------------------------------------------------------------------------------- Running tests for pka-lig section @@ -1959,7 +1993,7 @@ *** FAILED *** APBS returned 8.083516000000e+00 Expected result is 8.083540000000e+00 (0.0012% error) -Elapsed time: 46.108788 seconds +Elapsed time: 93.490539 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-smol-vdw.in @@ -1968,14 +2002,14 @@ *** FAILED *** APBS returned 2.096300000000e+01 Expected result is 2.096296000000e+01 (0.002% error) -Elapsed time: 41.098975 seconds +Elapsed time: 65.716455 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-mol-surf.in Testing computed result 1.192607686582E+02 against expected result 1.192608E+02 *** PASSED *** -Elapsed time: 36.987364 seconds +Elapsed time: 76.332174 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-smol-surf.in @@ -1984,9 +2018,9 @@ *** FAILED *** APBS returned 1.088773000000e+02 Expected result is 1.088748000000e+02 (0.125% error) -Elapsed time: 32.209530 seconds +Elapsed time: 59.285797 seconds -------------------------------------------------------------------------------- -Total elapsed time: 156.404657 seconds +Total elapsed time: 294.824965 seconds Test results have been logged -------------------------------------------------------------------------------- Running tests for point-pmf section @@ -1995,33 +2029,33 @@ Testing computed result 1.830820799027E+01 against expected result 1.830821E+01 *** PASSED *** -Elapsed time: 1.845804 seconds +Elapsed time: 6.946572 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file complex-0_2.in Testing computed result 8.906694086751E+00 against expected result 8.906694E+00 *** PASSED *** -Elapsed time: 1.851851 seconds +Elapsed time: 6.782852 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file complex-0_3.in Testing computed result 5.909599816984E+00 against expected result 5.909600E+00 *** PASSED *** -Elapsed time: 1.849069 seconds +Elapsed time: 6.698724 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file complex-0_4.in Testing computed result 4.430144947418E+00 against expected result 4.430145E+00 *** PASSED *** -Elapsed time: 1.852820 seconds +Elapsed time: 6.897486 seconds -------------------------------------------------------------------------------- -Total elapsed time: 7.399544 seconds +Total elapsed time: 27.325634 seconds Test results have been logged -------------------------------------------------------------------------------- -Running tests for solv Vio_ctor2: Gethostbyname fail INET sock <> dueto +Running tests foVio_ctor2: Gethostbyname fail INET sock <> dueto Vio_ctor2: Gethostbyname fail INET sock <> dueto asc_getToken: Error occurred (bailing out). Vio_scanf: Format problem with input. @@ -2035,7 +2069,7 @@ Vio_ctor2: Gethostbyname fail INET sock <> dueto asc_getToken: Error occurred (bailing out). Vio_scanf: Format problem with input. -section +r solv section -------------------------------------------------------------------------------- Testing input file apbs-mol.in @@ -2047,7 +2081,7 @@ Expected result is -3.904121000000e+02 (0.005% error) Testing computed result -3.541635359318E+02 against expected result -3.541635E+02 *** PASSED *** -Elapsed time: 3.005320 seconds +Elapsed time: 10.827333 seconds -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Testing input file apbs-smol.in @@ -2060,9 +2094,9 @@ Expected result is -3.912388000000e+02 (0.005% error) Testing computed result -3.536629226599E+02 against expected result -3.536629E+02 *** PASSED *** -Elapsed time: 2.996934 seconds +Elapsed time: 9.800069 seconds -------------------------------------------------------------------------------- -Total elapsed time: 6.002254 seconds +Total elapsed time: 20.627402 seconds Test results have been logged -------------------------------------------------------------------------------- make[1]: Leaving directory '/build/apbs-1.4' @@ -2081,9 +2115,9 @@ make -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/depend make -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/depend make[4]: Entering directory '/build/apbs-1.4/obj-aarch64-linux-gnu' -cd /build/apbs-1.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-1.4 /build/apbs-1.4/src/generic /build/apbs-1.4/obj-aarch64-linux-gnu /build/apbs-1.4/obj-aarch64-linux-gnu/src/generic /build/apbs-1.4/obj-aarch64-linux-gnu/src/generic/CMakeFiles/apbs_generic.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/apbs-1.4/obj-aarch64-linux-gnu' cd /build/apbs-1.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-1.4 /build/apbs-1.4/src/pmgc /build/apbs-1.4/obj-aarch64-linux-gnu /build/apbs-1.4/obj-aarch64-linux-gnu/src/pmgc /build/apbs-1.4/obj-aarch64-linux-gnu/src/pmgc/CMakeFiles/apbs_pmgc.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/apbs-1.4/obj-aarch64-linux-gnu' +cd /build/apbs-1.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-1.4 /build/apbs-1.4/src/generic /build/apbs-1.4/obj-aarch64-linux-gnu /build/apbs-1.4/obj-aarch64-linux-gnu/src/generic /build/apbs-1.4/obj-aarch64-linux-gnu/src/generic/CMakeFiles/apbs_generic.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/apbs-1.4/obj-aarch64-linux-gnu' make -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/build make[4]: Leaving directory '/build/apbs-1.4/obj-aarch64-linux-gnu' @@ -3454,20 +3488,22 @@ dh_gencontrol -O--parallel dh_md5sums -O--parallel dh_builddeb -O--parallel -dpkg-deb: building package 'apbs-dbgsym' in '../apbs-dbgsym_1.4-1_arm64.deb'. dpkg-deb: building package 'apbs' in '../apbs_1.4-1_arm64.deb'. +dpkg-deb: building package 'apbs-dbgsym' in '../apbs-dbgsym_1.4-1_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../apbs_1.4-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/12433/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/12433/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3806 and its subdirectories -I: Current time: Thu Aug 26 23:18:54 -12 2021 -I: pbuilder-time-stamp: 1630063134 +I: removing directory /srv/workspace/pbuilder/12433 and its subdirectories +I: Current time: Sat Jul 25 19:16:56 +14 2020 +I: pbuilder-time-stamp: 1595654216